Multiple sequence alignment - TraesCS1D01G055600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G055600 chr1D 100.000 5281 0 0 1 5281 36836385 36831105 0.000000e+00 9753.0
1 TraesCS1D01G055600 chr1D 84.444 135 21 0 3398 3532 36613153 36613019 3.320000e-27 134.0
2 TraesCS1D01G055600 chr1B 94.331 4692 173 46 1 4668 56883805 56879183 0.000000e+00 7105.0
3 TraesCS1D01G055600 chr1B 95.222 293 14 0 4989 5281 659525951 659526243 1.040000e-126 464.0
4 TraesCS1D01G055600 chr1B 82.595 316 20 5 4672 4955 56878069 56877757 4.080000e-61 246.0
5 TraesCS1D01G055600 chr1B 88.496 113 9 4 1734 1844 484057158 484057048 3.320000e-27 134.0
6 TraesCS1D01G055600 chr1A 93.529 2210 75 19 2834 4989 36268987 36266792 0.000000e+00 3227.0
7 TraesCS1D01G055600 chr1A 95.894 1583 54 6 1259 2831 36270605 36269024 0.000000e+00 2553.0
8 TraesCS1D01G055600 chr1A 92.590 1201 54 20 1 1191 36271811 36270636 0.000000e+00 1692.0
9 TraesCS1D01G055600 chr1A 83.696 184 30 0 3349 3532 36169012 36168829 1.950000e-39 174.0
10 TraesCS1D01G055600 chr1A 88.679 106 8 2 2349 2452 36269397 36269500 5.550000e-25 126.0
11 TraesCS1D01G055600 chr7D 94.521 292 16 0 4990 5281 423694610 423694901 8.060000e-123 451.0
12 TraesCS1D01G055600 chr5D 94.521 292 16 0 4990 5281 421146384 421146093 8.060000e-123 451.0
13 TraesCS1D01G055600 chr5D 94.198 293 17 0 4989 5281 246019655 246019363 1.040000e-121 448.0
14 TraesCS1D01G055600 chr5D 88.350 103 9 3 2352 2452 538010578 538010477 2.580000e-23 121.0
15 TraesCS1D01G055600 chr6D 94.178 292 17 0 4990 5281 97240847 97240556 3.750000e-121 446.0
16 TraesCS1D01G055600 chr2D 94.178 292 17 0 4990 5281 552731418 552731709 3.750000e-121 446.0
17 TraesCS1D01G055600 chr2D 94.178 292 17 0 4990 5281 586127789 586128080 3.750000e-121 446.0
18 TraesCS1D01G055600 chr2D 93.836 292 18 0 4990 5281 593406156 593406447 1.750000e-119 440.0
19 TraesCS1D01G055600 chr2D 93.515 293 19 0 4989 5281 60087114 60086822 2.260000e-118 436.0
20 TraesCS1D01G055600 chr3B 81.407 199 28 7 1474 1670 522279088 522278897 2.550000e-33 154.0
21 TraesCS1D01G055600 chr3B 88.679 106 10 2 2349 2452 556503411 556503306 1.540000e-25 128.0
22 TraesCS1D01G055600 chr6B 91.150 113 7 3 1734 1844 492780204 492780093 3.290000e-32 150.0
23 TraesCS1D01G055600 chr6B 88.182 110 8 4 2345 2452 292665145 292665251 5.550000e-25 126.0
24 TraesCS1D01G055600 chr6B 94.828 58 3 0 1734 1791 401021572 401021515 2.030000e-14 91.6
25 TraesCS1D01G055600 chr5A 91.150 113 7 3 1734 1844 130251631 130251520 3.290000e-32 150.0
26 TraesCS1D01G055600 chr5A 92.784 97 6 1 2352 2447 223139315 223139219 7.130000e-29 139.0
27 TraesCS1D01G055600 chr6A 90.265 113 8 3 1734 1844 341433058 341433169 1.530000e-30 145.0
28 TraesCS1D01G055600 chr7B 89.216 102 5 3 2352 2452 442376163 442376259 7.180000e-24 122.0
29 TraesCS1D01G055600 chr7B 88.350 103 9 3 2352 2452 6079545 6079444 2.580000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G055600 chr1D 36831105 36836385 5280 True 9753.000000 9753 100.000000 1 5281 1 chr1D.!!$R2 5280
1 TraesCS1D01G055600 chr1B 56877757 56883805 6048 True 3675.500000 7105 88.463000 1 4955 2 chr1B.!!$R2 4954
2 TraesCS1D01G055600 chr1A 36266792 36271811 5019 True 2490.666667 3227 94.004333 1 4989 3 chr1A.!!$R2 4988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 212 0.467290 TGGGGCTTCACAGTTTCCAC 60.467 55.000 0.00 0.00 0.00 4.02 F
1021 1040 0.397254 GGGAGAAGGAGATCCCGACA 60.397 60.000 0.00 0.00 45.63 4.35 F
1602 1622 0.248094 GAGCAAAATAAGCGCCGACC 60.248 55.000 2.29 0.00 37.01 4.79 F
1708 1730 2.073816 AGCGTGCTTGTTGTATGGTAC 58.926 47.619 0.00 0.00 0.00 3.34 F
1964 1986 2.477845 TTGAAGCTACTGCATGCTCA 57.522 45.000 20.33 9.38 42.74 4.26 F
3381 3451 0.984995 GAGGCTAACTGTGGGAAGGT 59.015 55.000 0.00 0.00 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1545 0.238817 TGCGCCAACAATACGGAAAC 59.761 50.000 4.18 0.00 0.00 2.78 R
1917 1939 1.277842 AGGGTGCATCACATGTAACGA 59.722 47.619 0.00 0.00 35.86 3.85 R
3130 3200 2.291741 GGGTCTCTGCAACAGTTTTGAG 59.708 50.000 0.00 0.00 32.61 3.02 R
3229 3299 3.016736 AGGGCACATGAATAGTTTTCCG 58.983 45.455 0.00 0.00 0.00 4.30 R
3819 3889 9.598517 AAACAGAGCAGTTTTGAAATTTATTGA 57.401 25.926 0.00 0.00 38.49 2.57 R
5134 6380 0.458543 CTCGTTCATGTGCTAGCCGT 60.459 55.000 13.29 1.98 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 196 5.128919 AGCAACTCTAATTAAGCTCATGGG 58.871 41.667 0.00 0.00 0.00 4.00
189 203 2.128771 TTAAGCTCATGGGGCTTCAC 57.871 50.000 23.00 0.00 45.45 3.18
192 206 1.001641 GCTCATGGGGCTTCACAGT 60.002 57.895 0.00 0.00 0.00 3.55
198 212 0.467290 TGGGGCTTCACAGTTTCCAC 60.467 55.000 0.00 0.00 0.00 4.02
200 214 1.515521 GGGCTTCACAGTTTCCACCG 61.516 60.000 0.00 0.00 0.00 4.94
203 217 1.002792 GCTTCACAGTTTCCACCGAAC 60.003 52.381 0.00 0.00 0.00 3.95
204 218 2.561569 CTTCACAGTTTCCACCGAACT 58.438 47.619 0.00 0.00 37.82 3.01
206 220 1.760613 TCACAGTTTCCACCGAACTCT 59.239 47.619 0.00 0.00 35.26 3.24
208 222 3.385433 TCACAGTTTCCACCGAACTCTAA 59.615 43.478 0.00 0.00 35.26 2.10
209 223 4.039973 TCACAGTTTCCACCGAACTCTAAT 59.960 41.667 0.00 0.00 35.26 1.73
210 224 4.755123 CACAGTTTCCACCGAACTCTAATT 59.245 41.667 0.00 0.00 35.26 1.40
211 225 5.929992 CACAGTTTCCACCGAACTCTAATTA 59.070 40.000 0.00 0.00 35.26 1.40
215 231 3.777478 TCCACCGAACTCTAATTAAGCG 58.223 45.455 0.00 0.00 0.00 4.68
235 251 1.142097 GGAGGACGCTTGGAGCTAC 59.858 63.158 0.00 0.00 39.60 3.58
659 677 1.360393 AAAGCCCAGGAAGACCCACA 61.360 55.000 0.00 0.00 37.41 4.17
774 792 1.411787 CCTCCTCCTCATTCGGGTAGT 60.412 57.143 0.00 0.00 0.00 2.73
775 793 1.683917 CTCCTCCTCATTCGGGTAGTG 59.316 57.143 0.00 0.00 0.00 2.74
776 794 1.006758 TCCTCCTCATTCGGGTAGTGT 59.993 52.381 0.00 0.00 0.00 3.55
777 795 1.137086 CCTCCTCATTCGGGTAGTGTG 59.863 57.143 0.00 0.00 0.00 3.82
778 796 0.535335 TCCTCATTCGGGTAGTGTGC 59.465 55.000 0.00 0.00 0.00 4.57
806 824 0.547954 AGGGTTCCTCTTCCTCCACC 60.548 60.000 0.00 0.00 0.00 4.61
886 905 1.129326 CACGATCCGAGGTAATTCGC 58.871 55.000 0.00 0.00 39.19 4.70
1020 1039 2.432119 GGGAGAAGGAGATCCCGAC 58.568 63.158 0.00 0.00 45.63 4.79
1021 1040 0.397254 GGGAGAAGGAGATCCCGACA 60.397 60.000 0.00 0.00 45.63 4.35
1027 1046 2.105128 GAGATCCCGACAGTGGCG 59.895 66.667 12.68 12.68 0.00 5.69
1066 1085 2.125229 CCTCGACCTCGACCTCGA 60.125 66.667 8.88 8.88 44.22 4.04
1069 1088 2.436292 CGACCTCGACCTCGACCT 60.436 66.667 1.47 0.00 44.22 3.85
1070 1089 2.462782 CGACCTCGACCTCGACCTC 61.463 68.421 1.47 0.00 44.22 3.85
1071 1090 2.436292 ACCTCGACCTCGACCTCG 60.436 66.667 0.00 1.30 44.22 4.63
1072 1091 3.878519 CCTCGACCTCGACCTCGC 61.879 72.222 2.68 0.00 44.22 5.03
1073 1092 3.878519 CTCGACCTCGACCTCGCC 61.879 72.222 2.68 0.00 44.22 5.54
1199 1218 2.203015 CCATAAGGTGGGGTCGCG 60.203 66.667 0.00 0.00 44.79 5.87
1201 1220 3.081409 ATAAGGTGGGGTCGCGCT 61.081 61.111 5.56 0.00 0.00 5.92
1202 1221 3.090219 ATAAGGTGGGGTCGCGCTC 62.090 63.158 5.56 0.00 0.00 5.03
1315 1334 1.765904 TGTGGGTGAGCTGAAGTGTTA 59.234 47.619 0.00 0.00 0.00 2.41
1478 1497 2.505405 CAGCATATGCAGAGCCATTCT 58.495 47.619 28.62 1.58 45.16 2.40
1525 1545 4.404394 AGTTTTAGTTTTGTGTTCAGGGGG 59.596 41.667 0.00 0.00 0.00 5.40
1602 1622 0.248094 GAGCAAAATAAGCGCCGACC 60.248 55.000 2.29 0.00 37.01 4.79
1633 1653 3.817709 AGTGGTGTTTGAAACCCATTG 57.182 42.857 17.21 0.00 36.83 2.82
1650 1670 4.142315 CCCATTGCTTAACAGTGATGGAAG 60.142 45.833 0.00 0.00 38.22 3.46
1674 1696 5.277250 GCTGTAGATGATTAAGAGTTGCTGC 60.277 44.000 0.00 0.00 0.00 5.25
1708 1730 2.073816 AGCGTGCTTGTTGTATGGTAC 58.926 47.619 0.00 0.00 0.00 3.34
1754 1776 6.368516 TGACTTTTTGCAGGCTATTTAATTGC 59.631 34.615 2.91 2.91 35.42 3.56
1885 1907 4.344978 GCCCTTCTTCAGGTTATTCCTTT 58.655 43.478 0.00 0.00 45.67 3.11
1917 1939 7.715249 TCAAACTACTTGCTGTTAGTTCTTGAT 59.285 33.333 5.32 0.00 34.76 2.57
1940 1962 3.309682 CGTTACATGTGATGCACCCTTAG 59.690 47.826 9.11 0.00 32.73 2.18
1946 1968 5.951747 ACATGTGATGCACCCTTAGTATTTT 59.048 36.000 0.00 0.00 32.73 1.82
1947 1969 5.895636 TGTGATGCACCCTTAGTATTTTG 57.104 39.130 0.00 0.00 32.73 2.44
1964 1986 2.477845 TTGAAGCTACTGCATGCTCA 57.522 45.000 20.33 9.38 42.74 4.26
2152 2177 7.683437 AGGATGTGCACATGATAAGATAATG 57.317 36.000 35.92 0.00 36.57 1.90
2209 2234 4.042809 TGATGGTTATTGTGTTCCCTGAGT 59.957 41.667 0.00 0.00 0.00 3.41
2437 2462 5.774630 AGCTAGTACAAAGTTGAGTCACTC 58.225 41.667 0.00 0.00 0.00 3.51
2443 2468 7.697691 AGTACAAAGTTGAGTCACTCATTTTG 58.302 34.615 27.57 27.57 43.24 2.44
2444 2469 5.894807 ACAAAGTTGAGTCACTCATTTTGG 58.105 37.500 29.98 19.58 42.67 3.28
2445 2470 5.163519 ACAAAGTTGAGTCACTCATTTTGGG 60.164 40.000 29.98 17.60 42.67 4.12
2446 2471 4.437682 AGTTGAGTCACTCATTTTGGGA 57.562 40.909 8.74 0.00 40.39 4.37
2447 2472 4.990526 AGTTGAGTCACTCATTTTGGGAT 58.009 39.130 8.74 0.00 40.39 3.85
2448 2473 4.763793 AGTTGAGTCACTCATTTTGGGATG 59.236 41.667 8.74 0.00 40.39 3.51
2879 2948 3.164026 TGCAGTCTTAGCATGCAGG 57.836 52.632 21.98 9.29 44.56 4.85
2983 3053 5.222631 GTCTTGCACCCAAATAGTTCTTTG 58.777 41.667 0.00 0.00 36.17 2.77
3003 3073 9.715121 TTCTTTGTTAGATAGTACGTCCAAATT 57.285 29.630 0.00 0.00 31.54 1.82
3027 3097 7.579589 TGTTTAAGCATGTGCACAATAATTC 57.420 32.000 25.72 15.05 45.16 2.17
3104 3174 7.092716 CCAAGTGAACTTTTCTTTGGATATGG 58.907 38.462 13.22 0.00 42.48 2.74
3229 3299 1.863454 CGCCATCTGCTTACTCATCAC 59.137 52.381 0.00 0.00 38.05 3.06
3381 3451 0.984995 GAGGCTAACTGTGGGAAGGT 59.015 55.000 0.00 0.00 0.00 3.50
3811 3881 6.649973 TCACATGTTGCCTTTTTATGGATTTG 59.350 34.615 0.00 0.00 0.00 2.32
3819 3889 7.734942 TGCCTTTTTATGGATTTGTTTCTCTT 58.265 30.769 0.00 0.00 0.00 2.85
4098 4169 2.480845 AGGAACTTATAATCCGCACGC 58.519 47.619 0.43 0.00 40.78 5.34
4237 4321 2.437180 TGATGCTCCGCCTGCTTG 60.437 61.111 0.00 0.00 0.00 4.01
4302 4386 4.453480 TTTGTCCTGAACTGGAGGAAAT 57.547 40.909 0.00 0.00 41.42 2.17
4389 4474 7.847096 TGTCAATGTTATGTATGTAGGAGTGT 58.153 34.615 0.00 0.00 0.00 3.55
4390 4475 7.763985 TGTCAATGTTATGTATGTAGGAGTGTG 59.236 37.037 0.00 0.00 0.00 3.82
4391 4476 6.761242 TCAATGTTATGTATGTAGGAGTGTGC 59.239 38.462 0.00 0.00 0.00 4.57
4392 4477 5.669164 TGTTATGTATGTAGGAGTGTGCA 57.331 39.130 0.00 0.00 0.00 4.57
4492 4581 2.888834 TGGCAAGCAAGTCCTTTTTC 57.111 45.000 0.00 0.00 0.00 2.29
4539 4628 1.838112 AAATGAAGATGCGGCTTCCA 58.162 45.000 11.77 5.03 42.79 3.53
4669 4759 9.840427 AAAATATGGCAGCGAATATGTTTATAC 57.160 29.630 0.00 0.00 0.00 1.47
4670 4760 8.560355 AATATGGCAGCGAATATGTTTATACA 57.440 30.769 0.00 0.00 38.95 2.29
4747 5947 4.309099 TCAAGATGTTGAAAAATGCAGCC 58.691 39.130 2.20 0.00 39.85 4.85
4759 5978 1.531423 ATGCAGCCGGATCATTCATC 58.469 50.000 5.05 0.00 0.00 2.92
4781 6001 3.074390 CCCTTGGGCATACTATGATCCAA 59.926 47.826 16.75 16.75 40.34 3.53
4799 6019 2.744202 CCAAATCTAGCAACAACTCGCT 59.256 45.455 0.00 0.00 42.34 4.93
4846 6069 1.372499 CCGCCCCATATACACGTCG 60.372 63.158 0.00 0.00 0.00 5.12
4847 6070 1.361271 CGCCCCATATACACGTCGT 59.639 57.895 0.00 0.00 0.00 4.34
4848 6071 0.662374 CGCCCCATATACACGTCGTC 60.662 60.000 0.00 0.00 0.00 4.20
4849 6072 0.386476 GCCCCATATACACGTCGTCA 59.614 55.000 0.00 0.00 0.00 4.35
4850 6073 1.202440 GCCCCATATACACGTCGTCAA 60.202 52.381 0.00 0.00 0.00 3.18
4851 6074 2.739287 GCCCCATATACACGTCGTCAAA 60.739 50.000 0.00 0.00 0.00 2.69
4873 6105 0.594602 GTTACGAAACCCCACAAGCC 59.405 55.000 0.00 0.00 0.00 4.35
4874 6106 0.183014 TTACGAAACCCCACAAGCCA 59.817 50.000 0.00 0.00 0.00 4.75
4875 6107 0.535553 TACGAAACCCCACAAGCCAC 60.536 55.000 0.00 0.00 0.00 5.01
4876 6108 1.528309 CGAAACCCCACAAGCCACT 60.528 57.895 0.00 0.00 0.00 4.00
4882 6114 1.601759 CCCACAAGCCACTCACTGG 60.602 63.158 0.00 0.00 44.08 4.00
4910 6152 0.738389 AAGTTGGCACCAAGAACACG 59.262 50.000 1.39 0.00 36.52 4.49
4970 6216 6.003950 ACTATTGGGAATCGGTGATTAATGG 58.996 40.000 0.00 0.00 31.89 3.16
4971 6217 3.943671 TGGGAATCGGTGATTAATGGT 57.056 42.857 0.00 0.00 31.89 3.55
4981 6227 7.548196 TCGGTGATTAATGGTAAGACAATTC 57.452 36.000 0.00 0.00 0.00 2.17
4989 6235 6.994421 AATGGTAAGACAATTCAAAAGGGT 57.006 33.333 0.00 0.00 0.00 4.34
4990 6236 5.782893 TGGTAAGACAATTCAAAAGGGTG 57.217 39.130 0.00 0.00 0.00 4.61
4991 6237 5.205056 TGGTAAGACAATTCAAAAGGGTGT 58.795 37.500 0.00 0.00 0.00 4.16
4992 6238 5.659079 TGGTAAGACAATTCAAAAGGGTGTT 59.341 36.000 0.00 0.00 0.00 3.32
4993 6239 5.983118 GGTAAGACAATTCAAAAGGGTGTTG 59.017 40.000 0.00 0.00 0.00 3.33
4994 6240 4.670896 AGACAATTCAAAAGGGTGTTGG 57.329 40.909 0.00 0.00 0.00 3.77
4995 6241 4.285863 AGACAATTCAAAAGGGTGTTGGA 58.714 39.130 0.00 0.00 0.00 3.53
4996 6242 4.714308 AGACAATTCAAAAGGGTGTTGGAA 59.286 37.500 0.00 0.00 0.00 3.53
4997 6243 5.188751 AGACAATTCAAAAGGGTGTTGGAAA 59.811 36.000 0.00 0.00 0.00 3.13
4998 6244 6.000246 ACAATTCAAAAGGGTGTTGGAAAT 58.000 33.333 0.00 0.00 0.00 2.17
4999 6245 7.070571 AGACAATTCAAAAGGGTGTTGGAAATA 59.929 33.333 0.00 0.00 0.00 1.40
5000 6246 7.744733 ACAATTCAAAAGGGTGTTGGAAATAT 58.255 30.769 0.00 0.00 0.00 1.28
5001 6247 8.217111 ACAATTCAAAAGGGTGTTGGAAATATT 58.783 29.630 0.00 0.00 0.00 1.28
5002 6248 9.717942 CAATTCAAAAGGGTGTTGGAAATATTA 57.282 29.630 0.00 0.00 0.00 0.98
5003 6249 9.942850 AATTCAAAAGGGTGTTGGAAATATTAG 57.057 29.630 0.00 0.00 0.00 1.73
5004 6250 6.930731 TCAAAAGGGTGTTGGAAATATTAGC 58.069 36.000 0.00 0.00 0.00 3.09
5005 6251 6.495181 TCAAAAGGGTGTTGGAAATATTAGCA 59.505 34.615 0.00 0.00 0.00 3.49
5006 6252 5.914898 AAGGGTGTTGGAAATATTAGCAC 57.085 39.130 0.00 0.00 0.00 4.40
5007 6253 5.193099 AGGGTGTTGGAAATATTAGCACT 57.807 39.130 4.38 0.00 0.00 4.40
5008 6254 5.580022 AGGGTGTTGGAAATATTAGCACTT 58.420 37.500 4.38 0.00 0.00 3.16
5009 6255 6.016555 AGGGTGTTGGAAATATTAGCACTTT 58.983 36.000 4.38 0.00 0.00 2.66
5010 6256 6.496911 AGGGTGTTGGAAATATTAGCACTTTT 59.503 34.615 4.38 0.00 0.00 2.27
5011 6257 6.811665 GGGTGTTGGAAATATTAGCACTTTTC 59.188 38.462 4.38 0.00 0.00 2.29
5012 6258 7.309805 GGGTGTTGGAAATATTAGCACTTTTCT 60.310 37.037 4.38 0.00 0.00 2.52
5013 6259 7.542130 GGTGTTGGAAATATTAGCACTTTTCTG 59.458 37.037 4.38 0.00 0.00 3.02
5014 6260 8.296713 GTGTTGGAAATATTAGCACTTTTCTGA 58.703 33.333 0.00 0.00 0.00 3.27
5015 6261 8.296713 TGTTGGAAATATTAGCACTTTTCTGAC 58.703 33.333 0.00 0.00 0.00 3.51
5016 6262 8.515414 GTTGGAAATATTAGCACTTTTCTGACT 58.485 33.333 0.00 0.00 0.00 3.41
5017 6263 9.733556 TTGGAAATATTAGCACTTTTCTGACTA 57.266 29.630 0.00 0.00 0.00 2.59
5018 6264 9.733556 TGGAAATATTAGCACTTTTCTGACTAA 57.266 29.630 0.00 0.00 0.00 2.24
5026 6272 9.601217 TTAGCACTTTTCTGACTAATCTAATCC 57.399 33.333 0.00 0.00 0.00 3.01
5027 6273 7.624549 AGCACTTTTCTGACTAATCTAATCCA 58.375 34.615 0.00 0.00 0.00 3.41
5028 6274 7.550906 AGCACTTTTCTGACTAATCTAATCCAC 59.449 37.037 0.00 0.00 0.00 4.02
5029 6275 7.464710 GCACTTTTCTGACTAATCTAATCCACG 60.465 40.741 0.00 0.00 0.00 4.94
5030 6276 7.759886 CACTTTTCTGACTAATCTAATCCACGA 59.240 37.037 0.00 0.00 0.00 4.35
5031 6277 7.976734 ACTTTTCTGACTAATCTAATCCACGAG 59.023 37.037 0.00 0.00 0.00 4.18
5032 6278 7.406031 TTTCTGACTAATCTAATCCACGAGT 57.594 36.000 0.00 0.00 0.00 4.18
5033 6279 8.515695 TTTCTGACTAATCTAATCCACGAGTA 57.484 34.615 0.00 0.00 0.00 2.59
5034 6280 8.515695 TTCTGACTAATCTAATCCACGAGTAA 57.484 34.615 0.00 0.00 0.00 2.24
5035 6281 8.515695 TCTGACTAATCTAATCCACGAGTAAA 57.484 34.615 0.00 0.00 0.00 2.01
5036 6282 8.404000 TCTGACTAATCTAATCCACGAGTAAAC 58.596 37.037 0.00 0.00 0.00 2.01
5037 6283 8.058667 TGACTAATCTAATCCACGAGTAAACA 57.941 34.615 0.00 0.00 0.00 2.83
5038 6284 8.188799 TGACTAATCTAATCCACGAGTAAACAG 58.811 37.037 0.00 0.00 0.00 3.16
5039 6285 8.064336 ACTAATCTAATCCACGAGTAAACAGT 57.936 34.615 0.00 0.00 0.00 3.55
5040 6286 9.182214 ACTAATCTAATCCACGAGTAAACAGTA 57.818 33.333 0.00 0.00 0.00 2.74
5042 6288 8.928270 AATCTAATCCACGAGTAAACAGTAAG 57.072 34.615 0.00 0.00 0.00 2.34
5043 6289 6.327934 TCTAATCCACGAGTAAACAGTAAGC 58.672 40.000 0.00 0.00 0.00 3.09
5044 6290 4.530710 ATCCACGAGTAAACAGTAAGCA 57.469 40.909 0.00 0.00 0.00 3.91
5045 6291 4.530710 TCCACGAGTAAACAGTAAGCAT 57.469 40.909 0.00 0.00 0.00 3.79
5046 6292 4.242475 TCCACGAGTAAACAGTAAGCATG 58.758 43.478 0.00 0.00 0.00 4.06
5047 6293 3.994392 CCACGAGTAAACAGTAAGCATGT 59.006 43.478 0.00 0.00 0.00 3.21
5048 6294 4.091509 CCACGAGTAAACAGTAAGCATGTC 59.908 45.833 0.00 0.00 0.00 3.06
5049 6295 4.684242 CACGAGTAAACAGTAAGCATGTCA 59.316 41.667 0.00 0.00 0.00 3.58
5050 6296 5.176774 CACGAGTAAACAGTAAGCATGTCAA 59.823 40.000 0.00 0.00 0.00 3.18
5051 6297 5.756347 ACGAGTAAACAGTAAGCATGTCAAA 59.244 36.000 0.00 0.00 0.00 2.69
5052 6298 6.426937 ACGAGTAAACAGTAAGCATGTCAAAT 59.573 34.615 0.00 0.00 0.00 2.32
5053 6299 7.601130 ACGAGTAAACAGTAAGCATGTCAAATA 59.399 33.333 0.00 0.00 0.00 1.40
5054 6300 7.898309 CGAGTAAACAGTAAGCATGTCAAATAC 59.102 37.037 0.00 0.00 0.00 1.89
5055 6301 7.739295 AGTAAACAGTAAGCATGTCAAATACG 58.261 34.615 0.00 0.00 0.00 3.06
5056 6302 5.545658 AACAGTAAGCATGTCAAATACGG 57.454 39.130 0.00 0.00 0.00 4.02
5057 6303 4.575885 ACAGTAAGCATGTCAAATACGGT 58.424 39.130 0.00 0.00 0.00 4.83
5058 6304 5.726397 ACAGTAAGCATGTCAAATACGGTA 58.274 37.500 0.00 0.00 0.00 4.02
5059 6305 6.346096 ACAGTAAGCATGTCAAATACGGTAT 58.654 36.000 0.00 0.00 0.00 2.73
5060 6306 6.257849 ACAGTAAGCATGTCAAATACGGTATG 59.742 38.462 0.58 0.00 0.00 2.39
5061 6307 4.552166 AAGCATGTCAAATACGGTATGC 57.448 40.909 0.58 1.62 40.74 3.14
5062 6308 3.540617 AGCATGTCAAATACGGTATGCA 58.459 40.909 11.15 0.00 42.34 3.96
5063 6309 4.136796 AGCATGTCAAATACGGTATGCAT 58.863 39.130 3.79 3.79 42.34 3.96
5064 6310 4.214119 AGCATGTCAAATACGGTATGCATC 59.786 41.667 0.19 0.00 42.34 3.91
5065 6311 4.214119 GCATGTCAAATACGGTATGCATCT 59.786 41.667 0.19 0.00 40.30 2.90
5066 6312 5.615544 GCATGTCAAATACGGTATGCATCTC 60.616 44.000 0.19 0.00 40.30 2.75
5067 6313 5.017294 TGTCAAATACGGTATGCATCTCA 57.983 39.130 0.19 0.00 0.00 3.27
5068 6314 5.610398 TGTCAAATACGGTATGCATCTCAT 58.390 37.500 0.19 0.00 39.17 2.90
5069 6315 6.754193 TGTCAAATACGGTATGCATCTCATA 58.246 36.000 0.19 0.00 36.63 2.15
5082 6328 5.470368 TGCATCTCATACCGATAACTAAGC 58.530 41.667 0.00 0.00 0.00 3.09
5083 6329 5.010617 TGCATCTCATACCGATAACTAAGCA 59.989 40.000 0.00 0.00 0.00 3.91
5084 6330 6.102663 GCATCTCATACCGATAACTAAGCAT 58.897 40.000 0.00 0.00 0.00 3.79
5085 6331 7.093945 TGCATCTCATACCGATAACTAAGCATA 60.094 37.037 0.00 0.00 0.00 3.14
5086 6332 7.923344 GCATCTCATACCGATAACTAAGCATAT 59.077 37.037 0.00 0.00 0.00 1.78
5087 6333 9.242477 CATCTCATACCGATAACTAAGCATATG 57.758 37.037 0.00 0.00 0.00 1.78
5088 6334 8.575649 TCTCATACCGATAACTAAGCATATGA 57.424 34.615 6.97 0.00 0.00 2.15
5089 6335 8.678199 TCTCATACCGATAACTAAGCATATGAG 58.322 37.037 6.97 10.34 42.97 2.90
5090 6336 7.258441 TCATACCGATAACTAAGCATATGAGC 58.742 38.462 6.97 0.00 0.00 4.26
5091 6337 5.468540 ACCGATAACTAAGCATATGAGCA 57.531 39.130 6.97 0.00 36.85 4.26
5092 6338 5.230942 ACCGATAACTAAGCATATGAGCAC 58.769 41.667 6.97 0.00 36.85 4.40
5093 6339 4.324669 CCGATAACTAAGCATATGAGCACG 59.675 45.833 6.97 0.49 36.85 5.34
5094 6340 4.917998 CGATAACTAAGCATATGAGCACGT 59.082 41.667 6.97 0.00 36.85 4.49
5095 6341 6.084277 CGATAACTAAGCATATGAGCACGTA 58.916 40.000 6.97 0.00 36.85 3.57
5096 6342 6.747739 CGATAACTAAGCATATGAGCACGTAT 59.252 38.462 6.97 0.00 36.85 3.06
5097 6343 7.908601 CGATAACTAAGCATATGAGCACGTATA 59.091 37.037 6.97 0.00 36.85 1.47
5098 6344 9.227490 GATAACTAAGCATATGAGCACGTATAG 57.773 37.037 6.97 0.00 36.85 1.31
5099 6345 6.576662 ACTAAGCATATGAGCACGTATAGT 57.423 37.500 6.97 0.10 36.85 2.12
5100 6346 7.683437 ACTAAGCATATGAGCACGTATAGTA 57.317 36.000 6.97 0.00 36.85 1.82
5101 6347 7.528307 ACTAAGCATATGAGCACGTATAGTAC 58.472 38.462 6.97 0.00 36.85 2.73
5102 6348 5.959618 AGCATATGAGCACGTATAGTACA 57.040 39.130 6.97 0.00 36.85 2.90
5103 6349 6.516739 AGCATATGAGCACGTATAGTACAT 57.483 37.500 6.97 0.00 36.85 2.29
5104 6350 7.625828 AGCATATGAGCACGTATAGTACATA 57.374 36.000 6.97 0.00 36.85 2.29
5105 6351 7.698628 AGCATATGAGCACGTATAGTACATAG 58.301 38.462 6.97 0.00 36.85 2.23
5106 6352 7.553044 AGCATATGAGCACGTATAGTACATAGA 59.447 37.037 6.97 0.00 36.85 1.98
5107 6353 8.182227 GCATATGAGCACGTATAGTACATAGAA 58.818 37.037 6.97 0.00 31.55 2.10
5108 6354 9.491934 CATATGAGCACGTATAGTACATAGAAC 57.508 37.037 0.00 0.00 31.55 3.01
5109 6355 6.309712 TGAGCACGTATAGTACATAGAACC 57.690 41.667 0.00 0.00 0.00 3.62
5110 6356 5.824097 TGAGCACGTATAGTACATAGAACCA 59.176 40.000 0.00 0.00 0.00 3.67
5111 6357 6.319405 TGAGCACGTATAGTACATAGAACCAA 59.681 38.462 0.00 0.00 0.00 3.67
5112 6358 7.104043 AGCACGTATAGTACATAGAACCAAA 57.896 36.000 0.00 0.00 0.00 3.28
5113 6359 7.549839 AGCACGTATAGTACATAGAACCAAAA 58.450 34.615 0.00 0.00 0.00 2.44
5114 6360 7.490402 AGCACGTATAGTACATAGAACCAAAAC 59.510 37.037 0.00 0.00 0.00 2.43
5115 6361 7.276218 GCACGTATAGTACATAGAACCAAAACA 59.724 37.037 0.00 0.00 0.00 2.83
5116 6362 9.309516 CACGTATAGTACATAGAACCAAAACAT 57.690 33.333 0.00 0.00 0.00 2.71
5117 6363 9.525409 ACGTATAGTACATAGAACCAAAACATC 57.475 33.333 0.00 0.00 0.00 3.06
5118 6364 9.745880 CGTATAGTACATAGAACCAAAACATCT 57.254 33.333 0.00 0.00 0.00 2.90
5127 6373 6.259550 AGAACCAAAACATCTATGAACAGC 57.740 37.500 0.00 0.00 0.00 4.40
5128 6374 5.769662 AGAACCAAAACATCTATGAACAGCA 59.230 36.000 0.00 0.00 0.00 4.41
5129 6375 6.435277 AGAACCAAAACATCTATGAACAGCAT 59.565 34.615 0.00 0.00 41.08 3.79
5130 6376 7.611467 AGAACCAAAACATCTATGAACAGCATA 59.389 33.333 0.00 0.00 38.44 3.14
5131 6377 7.886629 ACCAAAACATCTATGAACAGCATAT 57.113 32.000 0.00 0.00 38.72 1.78
5132 6378 8.978874 ACCAAAACATCTATGAACAGCATATA 57.021 30.769 0.00 0.00 38.72 0.86
5133 6379 9.578576 ACCAAAACATCTATGAACAGCATATAT 57.421 29.630 0.00 0.00 38.72 0.86
5137 6383 8.932945 AACATCTATGAACAGCATATATACGG 57.067 34.615 0.00 0.00 38.72 4.02
5138 6384 6.980978 ACATCTATGAACAGCATATATACGGC 59.019 38.462 0.00 0.95 38.72 5.68
5139 6385 6.775594 TCTATGAACAGCATATATACGGCT 57.224 37.500 5.18 5.18 38.72 5.52
5140 6386 7.875327 TCTATGAACAGCATATATACGGCTA 57.125 36.000 9.69 0.00 38.72 3.93
5141 6387 7.931275 TCTATGAACAGCATATATACGGCTAG 58.069 38.462 9.69 7.74 38.72 3.42
5142 6388 4.744570 TGAACAGCATATATACGGCTAGC 58.255 43.478 6.04 6.04 35.82 3.42
5143 6389 4.219725 TGAACAGCATATATACGGCTAGCA 59.780 41.667 18.24 0.00 35.82 3.49
5144 6390 4.111375 ACAGCATATATACGGCTAGCAC 57.889 45.455 18.24 5.06 35.82 4.40
5145 6391 3.509967 ACAGCATATATACGGCTAGCACA 59.490 43.478 18.24 0.28 35.82 4.57
5146 6392 4.160439 ACAGCATATATACGGCTAGCACAT 59.840 41.667 18.24 8.51 35.82 3.21
5147 6393 4.505556 CAGCATATATACGGCTAGCACATG 59.494 45.833 18.24 9.08 35.82 3.21
5148 6394 4.402474 AGCATATATACGGCTAGCACATGA 59.598 41.667 18.24 0.00 35.82 3.07
5149 6395 5.105351 AGCATATATACGGCTAGCACATGAA 60.105 40.000 18.24 0.00 35.82 2.57
5150 6396 5.005779 GCATATATACGGCTAGCACATGAAC 59.994 44.000 18.24 0.00 0.00 3.18
5151 6397 1.852942 ATACGGCTAGCACATGAACG 58.147 50.000 18.24 11.28 0.00 3.95
5152 6398 0.812549 TACGGCTAGCACATGAACGA 59.187 50.000 18.24 0.00 0.00 3.85
5153 6399 0.458543 ACGGCTAGCACATGAACGAG 60.459 55.000 18.24 0.00 0.00 4.18
5154 6400 0.458543 CGGCTAGCACATGAACGAGT 60.459 55.000 18.24 0.00 0.00 4.18
5155 6401 1.202256 CGGCTAGCACATGAACGAGTA 60.202 52.381 18.24 0.00 0.00 2.59
5156 6402 2.734175 CGGCTAGCACATGAACGAGTAA 60.734 50.000 18.24 0.00 0.00 2.24
5157 6403 3.259064 GGCTAGCACATGAACGAGTAAA 58.741 45.455 18.24 0.00 0.00 2.01
5158 6404 3.871594 GGCTAGCACATGAACGAGTAAAT 59.128 43.478 18.24 0.00 0.00 1.40
5159 6405 5.047847 GGCTAGCACATGAACGAGTAAATA 58.952 41.667 18.24 0.00 0.00 1.40
5160 6406 5.175856 GGCTAGCACATGAACGAGTAAATAG 59.824 44.000 18.24 0.00 0.00 1.73
5161 6407 5.175856 GCTAGCACATGAACGAGTAAATAGG 59.824 44.000 10.63 0.00 0.00 2.57
5162 6408 4.442706 AGCACATGAACGAGTAAATAGGG 58.557 43.478 0.00 0.00 0.00 3.53
5163 6409 3.560068 GCACATGAACGAGTAAATAGGGG 59.440 47.826 0.00 0.00 0.00 4.79
5164 6410 4.682320 GCACATGAACGAGTAAATAGGGGA 60.682 45.833 0.00 0.00 0.00 4.81
5165 6411 5.611374 CACATGAACGAGTAAATAGGGGAT 58.389 41.667 0.00 0.00 0.00 3.85
5166 6412 5.466728 CACATGAACGAGTAAATAGGGGATG 59.533 44.000 0.00 0.00 0.00 3.51
5167 6413 5.365605 ACATGAACGAGTAAATAGGGGATGA 59.634 40.000 0.00 0.00 0.00 2.92
5168 6414 6.043243 ACATGAACGAGTAAATAGGGGATGAT 59.957 38.462 0.00 0.00 0.00 2.45
5169 6415 6.097915 TGAACGAGTAAATAGGGGATGATC 57.902 41.667 0.00 0.00 0.00 2.92
5170 6416 4.785511 ACGAGTAAATAGGGGATGATCG 57.214 45.455 0.00 0.00 0.00 3.69
5171 6417 4.404640 ACGAGTAAATAGGGGATGATCGA 58.595 43.478 0.00 0.00 0.00 3.59
5172 6418 4.459685 ACGAGTAAATAGGGGATGATCGAG 59.540 45.833 0.00 0.00 0.00 4.04
5173 6419 4.459685 CGAGTAAATAGGGGATGATCGAGT 59.540 45.833 0.00 0.00 0.00 4.18
5174 6420 5.392165 CGAGTAAATAGGGGATGATCGAGTC 60.392 48.000 0.00 0.00 0.00 3.36
5175 6421 5.394738 AGTAAATAGGGGATGATCGAGTCA 58.605 41.667 0.00 0.00 42.06 3.41
5184 6430 1.605753 TGATCGAGTCATACCCTCCG 58.394 55.000 0.00 0.00 0.00 4.63
5185 6431 0.882474 GATCGAGTCATACCCTCCGG 59.118 60.000 0.00 0.00 0.00 5.14
5186 6432 5.659033 ATGATCGAGTCATACCCTCCGGT 62.659 52.174 0.00 0.00 45.67 5.28
5187 6433 0.033796 TCGAGTCATACCCTCCGGTT 60.034 55.000 0.00 0.00 40.58 4.44
5188 6434 0.102481 CGAGTCATACCCTCCGGTTG 59.898 60.000 0.00 0.00 40.58 3.77
5189 6435 0.464452 GAGTCATACCCTCCGGTTGG 59.536 60.000 0.00 5.83 40.58 3.77
5190 6436 1.153229 GTCATACCCTCCGGTTGGC 60.153 63.158 0.00 0.00 40.58 4.52
5191 6437 1.306654 TCATACCCTCCGGTTGGCT 60.307 57.895 0.00 0.00 40.58 4.75
5192 6438 0.031917 TCATACCCTCCGGTTGGCTA 60.032 55.000 0.00 0.00 40.58 3.93
5193 6439 0.393077 CATACCCTCCGGTTGGCTAG 59.607 60.000 0.00 0.00 40.58 3.42
5194 6440 0.763223 ATACCCTCCGGTTGGCTAGG 60.763 60.000 0.00 0.00 40.58 3.02
5195 6441 4.176752 CCCTCCGGTTGGCTAGGC 62.177 72.222 9.85 9.85 34.14 3.93
5228 6474 4.853050 AGCGGCAGCCTCAGCATC 62.853 66.667 10.54 0.00 46.67 3.91
5247 6493 3.896479 GCCGAGGCCTTCTTCTTG 58.104 61.111 6.77 0.00 34.56 3.02
5248 6494 1.296715 GCCGAGGCCTTCTTCTTGA 59.703 57.895 6.77 0.00 34.56 3.02
5249 6495 1.021920 GCCGAGGCCTTCTTCTTGAC 61.022 60.000 6.77 0.00 34.56 3.18
5250 6496 0.737715 CCGAGGCCTTCTTCTTGACG 60.738 60.000 6.77 1.47 0.00 4.35
5251 6497 0.737715 CGAGGCCTTCTTCTTGACGG 60.738 60.000 6.77 0.00 37.18 4.79
5254 6500 3.876300 CCTTCTTCTTGACGGCGG 58.124 61.111 13.24 0.00 0.00 6.13
5255 6501 2.391389 CCTTCTTCTTGACGGCGGC 61.391 63.158 13.24 9.67 0.00 6.53
5256 6502 2.730672 CTTCTTCTTGACGGCGGCG 61.731 63.158 31.06 31.06 0.00 6.46
5257 6503 3.509137 TTCTTCTTGACGGCGGCGT 62.509 57.895 38.13 38.13 0.00 5.68
5258 6504 3.479269 CTTCTTGACGGCGGCGTC 61.479 66.667 45.48 45.48 39.16 5.19
5272 6518 4.082523 CGTCGTCAGCCATGGGGT 62.083 66.667 15.13 0.00 36.17 4.95
5273 6519 2.125106 GTCGTCAGCCATGGGGTC 60.125 66.667 15.13 0.00 36.17 4.46
5274 6520 3.770040 TCGTCAGCCATGGGGTCG 61.770 66.667 15.13 6.97 36.17 4.79
5275 6521 3.770040 CGTCAGCCATGGGGTCGA 61.770 66.667 15.13 0.00 36.17 4.20
5276 6522 2.911143 GTCAGCCATGGGGTCGAT 59.089 61.111 15.13 0.00 36.17 3.59
5277 6523 1.524621 GTCAGCCATGGGGTCGATG 60.525 63.158 15.13 0.00 36.17 3.84
5278 6524 2.903855 CAGCCATGGGGTCGATGC 60.904 66.667 15.13 0.00 36.17 3.91
5279 6525 3.410628 AGCCATGGGGTCGATGCA 61.411 61.111 15.13 0.00 36.17 3.96
5280 6526 2.903855 GCCATGGGGTCGATGCAG 60.904 66.667 15.13 0.00 36.17 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 163 6.727824 TGAGCTTAATTAGAGTTGCTTGAC 57.272 37.500 0.00 0.00 0.00 3.18
164 172 4.363991 AGCCCCATGAGCTTAATTAGAG 57.636 45.455 4.53 0.00 37.24 2.43
182 196 0.534203 TCGGTGGAAACTGTGAAGCC 60.534 55.000 0.00 0.00 0.00 4.35
189 203 6.402226 GCTTAATTAGAGTTCGGTGGAAACTG 60.402 42.308 0.00 0.00 33.05 3.16
192 206 4.628333 CGCTTAATTAGAGTTCGGTGGAAA 59.372 41.667 0.00 0.00 33.05 3.13
198 212 1.521423 CCGCGCTTAATTAGAGTTCGG 59.479 52.381 5.56 11.21 0.00 4.30
200 214 2.795470 CCTCCGCGCTTAATTAGAGTTC 59.205 50.000 5.56 0.00 0.00 3.01
203 217 2.395654 GTCCTCCGCGCTTAATTAGAG 58.604 52.381 5.56 0.00 0.00 2.43
204 218 1.268896 CGTCCTCCGCGCTTAATTAGA 60.269 52.381 5.56 0.00 0.00 2.10
206 220 3.261441 CGTCCTCCGCGCTTAATTA 57.739 52.632 5.56 0.00 0.00 1.40
425 441 3.453679 GTTCCTCCGCGCCTCTCT 61.454 66.667 0.00 0.00 0.00 3.10
707 725 5.047660 CGAGGAATTAGTAGCAGAGCCTAAT 60.048 44.000 0.00 0.00 33.86 1.73
774 792 2.715532 GAACCCTCGAGCACAGCACA 62.716 60.000 6.99 0.00 0.00 4.57
775 793 2.029844 GAACCCTCGAGCACAGCAC 61.030 63.158 6.99 0.00 0.00 4.40
776 794 2.343758 GAACCCTCGAGCACAGCA 59.656 61.111 6.99 0.00 0.00 4.41
777 795 2.435059 GGAACCCTCGAGCACAGC 60.435 66.667 6.99 0.00 0.00 4.40
778 796 1.216710 GAGGAACCCTCGAGCACAG 59.783 63.158 6.99 0.00 41.08 3.66
927 946 3.444916 GATTACAGCGAGAAATCGACCA 58.555 45.455 1.17 0.00 34.64 4.02
1143 1162 0.460284 GGATCAGCCGCTTCTTCGAA 60.460 55.000 0.00 0.00 0.00 3.71
1199 1218 2.588989 CAGGGAGAAGCCAGGAGC 59.411 66.667 0.00 0.00 44.25 4.70
1201 1220 1.613630 GACCAGGGAGAAGCCAGGA 60.614 63.158 0.00 0.00 38.95 3.86
1202 1221 2.674220 GGACCAGGGAGAAGCCAGG 61.674 68.421 0.00 0.00 38.95 4.45
1203 1222 1.908340 CTGGACCAGGGAGAAGCCAG 61.908 65.000 14.26 0.00 38.95 4.85
1478 1497 2.553904 GGACTATTCGGATACCTCGGGA 60.554 54.545 0.00 0.00 0.00 5.14
1525 1545 0.238817 TGCGCCAACAATACGGAAAC 59.761 50.000 4.18 0.00 0.00 2.78
1602 1622 4.380531 TCAAACACCACTTCTAAGCAGAG 58.619 43.478 0.00 0.00 30.73 3.35
1633 1653 3.077359 ACAGCTTCCATCACTGTTAAGC 58.923 45.455 0.00 0.00 41.78 3.09
1650 1670 5.277250 GCAGCAACTCTTAATCATCTACAGC 60.277 44.000 0.00 0.00 0.00 4.40
1708 1730 1.135859 GCACAGTTCAGCAATTCGGAG 60.136 52.381 0.00 0.00 0.00 4.63
1754 1776 1.462616 TTGGGATCCAATGCTTCACG 58.537 50.000 15.23 0.00 38.75 4.35
1885 1907 7.822658 ACTAACAGCAAGTAGTTTGACAAAAA 58.177 30.769 1.27 0.00 39.21 1.94
1896 1918 5.864474 ACGATCAAGAACTAACAGCAAGTAG 59.136 40.000 0.00 0.00 0.00 2.57
1909 1931 5.163864 TGCATCACATGTAACGATCAAGAAC 60.164 40.000 0.00 0.00 0.00 3.01
1917 1939 1.277842 AGGGTGCATCACATGTAACGA 59.722 47.619 0.00 0.00 35.86 3.85
1940 1962 5.163723 TGAGCATGCAGTAGCTTCAAAATAC 60.164 40.000 21.98 0.00 42.04 1.89
1946 1968 2.285977 CATGAGCATGCAGTAGCTTCA 58.714 47.619 21.98 13.15 42.04 3.02
1947 1969 2.286872 ACATGAGCATGCAGTAGCTTC 58.713 47.619 21.98 7.20 42.04 3.86
1964 1986 1.362224 AGTGGTGGGTGCTAAGACAT 58.638 50.000 0.00 0.00 0.00 3.06
2061 2086 6.561519 AAGTGGCTATTGTACTTGGATACT 57.438 37.500 0.00 0.00 33.69 2.12
2303 2328 8.642935 TCACTGTCAAATGGGAATTGTTATTA 57.357 30.769 0.00 0.00 0.00 0.98
2437 2462 6.833416 TCCAAATAGTACTCCATCCCAAAATG 59.167 38.462 0.00 0.00 0.00 2.32
2443 2468 5.825593 TGATCCAAATAGTACTCCATCCC 57.174 43.478 0.00 0.00 0.00 3.85
2444 2469 7.721399 ACAAATGATCCAAATAGTACTCCATCC 59.279 37.037 0.00 0.00 0.00 3.51
2445 2470 8.682936 ACAAATGATCCAAATAGTACTCCATC 57.317 34.615 0.00 0.00 0.00 3.51
2446 2471 9.479549 AAACAAATGATCCAAATAGTACTCCAT 57.520 29.630 0.00 0.00 0.00 3.41
2447 2472 8.877864 AAACAAATGATCCAAATAGTACTCCA 57.122 30.769 0.00 0.00 0.00 3.86
2837 2906 7.756722 GCACATTTTAGTATGTTGAGAATGCTT 59.243 33.333 0.00 0.00 36.64 3.91
2908 2977 4.397420 ACAACAGCATCAGTTATCCAACA 58.603 39.130 0.00 0.00 37.10 3.33
3003 3073 7.328982 CAGAATTATTGTGCACATGCTTAAACA 59.671 33.333 22.39 1.87 42.66 2.83
3079 3149 7.092716 CCATATCCAAAGAAAAGTTCACTTGG 58.907 38.462 12.37 12.37 42.09 3.61
3130 3200 2.291741 GGGTCTCTGCAACAGTTTTGAG 59.708 50.000 0.00 0.00 32.61 3.02
3229 3299 3.016736 AGGGCACATGAATAGTTTTCCG 58.983 45.455 0.00 0.00 0.00 4.30
3819 3889 9.598517 AAACAGAGCAGTTTTGAAATTTATTGA 57.401 25.926 0.00 0.00 38.49 2.57
4098 4169 1.171308 CCCTGCCAAGATGTGAACAG 58.829 55.000 0.00 0.00 33.37 3.16
4160 4244 4.722700 GGCTTCCTCTTGCGGCCA 62.723 66.667 2.24 0.00 42.08 5.36
4237 4321 4.118410 CAGATACTCAGTTCCATCACTGC 58.882 47.826 0.00 0.00 43.51 4.40
4668 4758 4.870123 ACACATGCCATGTTTGTATTGT 57.130 36.364 7.80 0.00 42.70 2.71
4669 4759 6.798482 AGATACACATGCCATGTTTGTATTG 58.202 36.000 17.22 5.37 42.70 1.90
4670 4760 7.122501 TCAAGATACACATGCCATGTTTGTATT 59.877 33.333 17.22 8.12 42.70 1.89
4759 5978 2.644299 TGGATCATAGTATGCCCAAGGG 59.356 50.000 16.76 0.00 32.50 3.95
4781 6001 2.028112 TCCAGCGAGTTGTTGCTAGATT 60.028 45.455 0.00 0.00 42.05 2.40
4799 6019 5.942236 CAGGATCTTTCTTCATGTTCTTCCA 59.058 40.000 0.00 0.00 0.00 3.53
4836 6056 4.792702 CGTAACCATTTGACGACGTGTATA 59.207 41.667 4.58 0.00 38.88 1.47
4864 6096 1.601759 CCAGTGAGTGGCTTGTGGG 60.602 63.158 0.00 0.00 40.39 4.61
4865 6097 4.069869 CCAGTGAGTGGCTTGTGG 57.930 61.111 0.00 0.00 40.39 4.17
4873 6105 1.201181 CTTCGAGGAGACCAGTGAGTG 59.799 57.143 0.00 0.00 0.00 3.51
4874 6106 1.202952 ACTTCGAGGAGACCAGTGAGT 60.203 52.381 0.00 0.00 0.00 3.41
4875 6107 1.540267 ACTTCGAGGAGACCAGTGAG 58.460 55.000 0.00 0.00 0.00 3.51
4876 6108 1.613925 CAACTTCGAGGAGACCAGTGA 59.386 52.381 0.00 0.00 0.00 3.41
4882 6114 0.670854 GGTGCCAACTTCGAGGAGAC 60.671 60.000 0.00 0.00 0.00 3.36
4970 6216 5.983118 CCAACACCCTTTTGAATTGTCTTAC 59.017 40.000 0.00 0.00 0.00 2.34
4971 6217 5.894393 TCCAACACCCTTTTGAATTGTCTTA 59.106 36.000 0.00 0.00 0.00 2.10
4981 6227 6.589907 GTGCTAATATTTCCAACACCCTTTTG 59.410 38.462 0.00 0.00 0.00 2.44
4989 6235 8.296713 GTCAGAAAAGTGCTAATATTTCCAACA 58.703 33.333 0.00 0.00 33.35 3.33
4990 6236 8.515414 AGTCAGAAAAGTGCTAATATTTCCAAC 58.485 33.333 0.00 0.00 33.35 3.77
4991 6237 8.635765 AGTCAGAAAAGTGCTAATATTTCCAA 57.364 30.769 0.00 0.00 33.35 3.53
4992 6238 9.733556 TTAGTCAGAAAAGTGCTAATATTTCCA 57.266 29.630 0.00 0.00 33.35 3.53
5000 6246 9.601217 GGATTAGATTAGTCAGAAAAGTGCTAA 57.399 33.333 0.00 0.00 0.00 3.09
5001 6247 8.758829 TGGATTAGATTAGTCAGAAAAGTGCTA 58.241 33.333 0.00 0.00 0.00 3.49
5002 6248 7.550906 GTGGATTAGATTAGTCAGAAAAGTGCT 59.449 37.037 0.00 0.00 0.00 4.40
5003 6249 7.464710 CGTGGATTAGATTAGTCAGAAAAGTGC 60.465 40.741 0.00 0.00 0.00 4.40
5004 6250 7.759886 TCGTGGATTAGATTAGTCAGAAAAGTG 59.240 37.037 0.00 0.00 0.00 3.16
5005 6251 7.837863 TCGTGGATTAGATTAGTCAGAAAAGT 58.162 34.615 0.00 0.00 0.00 2.66
5006 6252 7.976734 ACTCGTGGATTAGATTAGTCAGAAAAG 59.023 37.037 0.00 0.00 0.00 2.27
5007 6253 7.837863 ACTCGTGGATTAGATTAGTCAGAAAA 58.162 34.615 0.00 0.00 0.00 2.29
5008 6254 7.406031 ACTCGTGGATTAGATTAGTCAGAAA 57.594 36.000 0.00 0.00 0.00 2.52
5009 6255 8.515695 TTACTCGTGGATTAGATTAGTCAGAA 57.484 34.615 0.00 0.00 0.00 3.02
5010 6256 8.404000 GTTTACTCGTGGATTAGATTAGTCAGA 58.596 37.037 0.00 0.00 0.00 3.27
5011 6257 8.188799 TGTTTACTCGTGGATTAGATTAGTCAG 58.811 37.037 0.00 0.00 0.00 3.51
5012 6258 8.058667 TGTTTACTCGTGGATTAGATTAGTCA 57.941 34.615 0.00 0.00 0.00 3.41
5013 6259 8.189460 ACTGTTTACTCGTGGATTAGATTAGTC 58.811 37.037 0.00 0.00 0.00 2.59
5014 6260 8.064336 ACTGTTTACTCGTGGATTAGATTAGT 57.936 34.615 0.00 0.00 0.00 2.24
5017 6263 7.491696 GCTTACTGTTTACTCGTGGATTAGATT 59.508 37.037 0.00 0.00 0.00 2.40
5018 6264 6.979238 GCTTACTGTTTACTCGTGGATTAGAT 59.021 38.462 0.00 0.00 0.00 1.98
5019 6265 6.071784 TGCTTACTGTTTACTCGTGGATTAGA 60.072 38.462 0.00 0.00 0.00 2.10
5020 6266 6.097356 TGCTTACTGTTTACTCGTGGATTAG 58.903 40.000 0.00 0.00 0.00 1.73
5021 6267 6.028146 TGCTTACTGTTTACTCGTGGATTA 57.972 37.500 0.00 0.00 0.00 1.75
5022 6268 4.890088 TGCTTACTGTTTACTCGTGGATT 58.110 39.130 0.00 0.00 0.00 3.01
5023 6269 4.530710 TGCTTACTGTTTACTCGTGGAT 57.469 40.909 0.00 0.00 0.00 3.41
5024 6270 4.242475 CATGCTTACTGTTTACTCGTGGA 58.758 43.478 0.00 0.00 0.00 4.02
5025 6271 3.994392 ACATGCTTACTGTTTACTCGTGG 59.006 43.478 0.00 0.00 0.00 4.94
5026 6272 4.684242 TGACATGCTTACTGTTTACTCGTG 59.316 41.667 0.00 0.00 0.00 4.35
5027 6273 4.878439 TGACATGCTTACTGTTTACTCGT 58.122 39.130 0.00 0.00 0.00 4.18
5028 6274 5.839262 TTGACATGCTTACTGTTTACTCG 57.161 39.130 0.00 0.00 0.00 4.18
5029 6275 7.898309 CGTATTTGACATGCTTACTGTTTACTC 59.102 37.037 0.00 0.00 0.00 2.59
5030 6276 7.148474 CCGTATTTGACATGCTTACTGTTTACT 60.148 37.037 0.00 0.00 0.00 2.24
5031 6277 6.959311 CCGTATTTGACATGCTTACTGTTTAC 59.041 38.462 0.00 0.00 0.00 2.01
5032 6278 6.651643 ACCGTATTTGACATGCTTACTGTTTA 59.348 34.615 0.00 0.00 0.00 2.01
5033 6279 5.472137 ACCGTATTTGACATGCTTACTGTTT 59.528 36.000 0.00 0.00 0.00 2.83
5034 6280 5.001232 ACCGTATTTGACATGCTTACTGTT 58.999 37.500 0.00 0.00 0.00 3.16
5035 6281 4.575885 ACCGTATTTGACATGCTTACTGT 58.424 39.130 0.00 0.00 0.00 3.55
5036 6282 6.649436 CATACCGTATTTGACATGCTTACTG 58.351 40.000 0.00 0.00 0.00 2.74
5037 6283 5.236478 GCATACCGTATTTGACATGCTTACT 59.764 40.000 0.00 0.00 36.66 2.24
5038 6284 5.007234 TGCATACCGTATTTGACATGCTTAC 59.993 40.000 6.00 0.00 39.53 2.34
5039 6285 5.119694 TGCATACCGTATTTGACATGCTTA 58.880 37.500 6.00 0.00 39.53 3.09
5040 6286 3.944650 TGCATACCGTATTTGACATGCTT 59.055 39.130 6.00 0.00 39.53 3.91
5041 6287 3.540617 TGCATACCGTATTTGACATGCT 58.459 40.909 6.00 0.00 39.53 3.79
5042 6288 3.961477 TGCATACCGTATTTGACATGC 57.039 42.857 0.00 0.00 39.32 4.06
5043 6289 5.466393 TGAGATGCATACCGTATTTGACATG 59.534 40.000 0.00 0.00 0.00 3.21
5044 6290 5.610398 TGAGATGCATACCGTATTTGACAT 58.390 37.500 0.00 0.00 0.00 3.06
5045 6291 5.017294 TGAGATGCATACCGTATTTGACA 57.983 39.130 0.00 0.00 0.00 3.58
5057 6303 7.093945 TGCTTAGTTATCGGTATGAGATGCATA 60.094 37.037 0.00 0.00 38.44 3.14
5058 6304 6.102663 GCTTAGTTATCGGTATGAGATGCAT 58.897 40.000 0.00 0.00 41.08 3.96
5059 6305 5.010617 TGCTTAGTTATCGGTATGAGATGCA 59.989 40.000 0.00 0.00 0.00 3.96
5060 6306 5.470368 TGCTTAGTTATCGGTATGAGATGC 58.530 41.667 0.00 0.00 0.00 3.91
5061 6307 9.242477 CATATGCTTAGTTATCGGTATGAGATG 57.758 37.037 0.00 0.00 0.00 2.90
5062 6308 9.190317 TCATATGCTTAGTTATCGGTATGAGAT 57.810 33.333 0.00 0.00 0.00 2.75
5063 6309 8.575649 TCATATGCTTAGTTATCGGTATGAGA 57.424 34.615 0.00 0.00 0.00 3.27
5064 6310 7.433719 GCTCATATGCTTAGTTATCGGTATGAG 59.566 40.741 12.35 12.35 43.30 2.90
5065 6311 7.093945 TGCTCATATGCTTAGTTATCGGTATGA 60.094 37.037 0.00 0.00 0.00 2.15
5066 6312 7.009631 GTGCTCATATGCTTAGTTATCGGTATG 59.990 40.741 0.00 0.00 0.00 2.39
5067 6313 7.036220 GTGCTCATATGCTTAGTTATCGGTAT 58.964 38.462 0.00 0.00 0.00 2.73
5068 6314 6.387465 GTGCTCATATGCTTAGTTATCGGTA 58.613 40.000 0.00 0.00 0.00 4.02
5069 6315 5.230942 GTGCTCATATGCTTAGTTATCGGT 58.769 41.667 0.00 0.00 0.00 4.69
5070 6316 4.324669 CGTGCTCATATGCTTAGTTATCGG 59.675 45.833 0.00 0.00 0.00 4.18
5071 6317 4.917998 ACGTGCTCATATGCTTAGTTATCG 59.082 41.667 0.00 0.00 0.00 2.92
5072 6318 9.227490 CTATACGTGCTCATATGCTTAGTTATC 57.773 37.037 0.00 0.00 0.00 1.75
5073 6319 8.740906 ACTATACGTGCTCATATGCTTAGTTAT 58.259 33.333 0.00 0.00 0.00 1.89
5074 6320 8.107399 ACTATACGTGCTCATATGCTTAGTTA 57.893 34.615 0.00 0.00 0.00 2.24
5075 6321 6.982852 ACTATACGTGCTCATATGCTTAGTT 58.017 36.000 0.00 0.00 0.00 2.24
5076 6322 6.576662 ACTATACGTGCTCATATGCTTAGT 57.423 37.500 0.00 0.00 0.00 2.24
5077 6323 7.527457 TGTACTATACGTGCTCATATGCTTAG 58.473 38.462 0.00 0.00 0.00 2.18
5078 6324 7.443259 TGTACTATACGTGCTCATATGCTTA 57.557 36.000 0.00 0.00 0.00 3.09
5079 6325 6.327279 TGTACTATACGTGCTCATATGCTT 57.673 37.500 0.00 0.00 0.00 3.91
5080 6326 5.959618 TGTACTATACGTGCTCATATGCT 57.040 39.130 0.00 0.00 0.00 3.79
5081 6327 7.694886 TCTATGTACTATACGTGCTCATATGC 58.305 38.462 0.00 0.00 0.00 3.14
5082 6328 9.491934 GTTCTATGTACTATACGTGCTCATATG 57.508 37.037 0.00 0.00 0.00 1.78
5083 6329 8.675504 GGTTCTATGTACTATACGTGCTCATAT 58.324 37.037 0.00 0.00 0.00 1.78
5084 6330 7.662669 TGGTTCTATGTACTATACGTGCTCATA 59.337 37.037 0.00 0.00 0.00 2.15
5085 6331 6.489022 TGGTTCTATGTACTATACGTGCTCAT 59.511 38.462 0.00 0.00 0.00 2.90
5086 6332 5.824097 TGGTTCTATGTACTATACGTGCTCA 59.176 40.000 0.00 0.00 0.00 4.26
5087 6333 6.309712 TGGTTCTATGTACTATACGTGCTC 57.690 41.667 0.00 0.00 0.00 4.26
5088 6334 6.704289 TTGGTTCTATGTACTATACGTGCT 57.296 37.500 0.00 0.00 0.00 4.40
5089 6335 7.276218 TGTTTTGGTTCTATGTACTATACGTGC 59.724 37.037 0.00 0.00 0.00 5.34
5090 6336 8.692110 TGTTTTGGTTCTATGTACTATACGTG 57.308 34.615 0.00 0.00 0.00 4.49
5091 6337 9.525409 GATGTTTTGGTTCTATGTACTATACGT 57.475 33.333 0.00 0.00 0.00 3.57
5092 6338 9.745880 AGATGTTTTGGTTCTATGTACTATACG 57.254 33.333 0.00 0.00 0.00 3.06
5099 6345 9.952030 TGTTCATAGATGTTTTGGTTCTATGTA 57.048 29.630 15.15 6.70 44.88 2.29
5100 6346 8.862325 TGTTCATAGATGTTTTGGTTCTATGT 57.138 30.769 15.15 0.00 44.88 2.29
5101 6347 7.912250 GCTGTTCATAGATGTTTTGGTTCTATG 59.088 37.037 11.23 11.23 45.50 2.23
5102 6348 7.611467 TGCTGTTCATAGATGTTTTGGTTCTAT 59.389 33.333 0.00 0.00 33.92 1.98
5103 6349 6.939730 TGCTGTTCATAGATGTTTTGGTTCTA 59.060 34.615 0.00 0.00 0.00 2.10
5104 6350 5.769662 TGCTGTTCATAGATGTTTTGGTTCT 59.230 36.000 0.00 0.00 0.00 3.01
5105 6351 6.012658 TGCTGTTCATAGATGTTTTGGTTC 57.987 37.500 0.00 0.00 0.00 3.62
5106 6352 6.594788 ATGCTGTTCATAGATGTTTTGGTT 57.405 33.333 0.00 0.00 32.59 3.67
5107 6353 7.886629 ATATGCTGTTCATAGATGTTTTGGT 57.113 32.000 0.00 0.00 40.69 3.67
5111 6357 9.371136 CCGTATATATGCTGTTCATAGATGTTT 57.629 33.333 0.00 0.00 39.27 2.83
5112 6358 7.492669 GCCGTATATATGCTGTTCATAGATGTT 59.507 37.037 0.00 0.00 39.27 2.71
5113 6359 6.980978 GCCGTATATATGCTGTTCATAGATGT 59.019 38.462 0.00 0.00 39.27 3.06
5114 6360 7.205992 AGCCGTATATATGCTGTTCATAGATG 58.794 38.462 8.46 0.00 39.27 2.90
5115 6361 7.353414 AGCCGTATATATGCTGTTCATAGAT 57.647 36.000 8.46 0.00 41.17 1.98
5116 6362 6.775594 AGCCGTATATATGCTGTTCATAGA 57.224 37.500 8.46 0.00 40.69 1.98
5117 6363 6.638873 GCTAGCCGTATATATGCTGTTCATAG 59.361 42.308 16.02 8.23 40.69 2.23
5118 6364 6.096282 TGCTAGCCGTATATATGCTGTTCATA 59.904 38.462 13.29 0.00 41.52 2.15
5119 6365 5.105351 TGCTAGCCGTATATATGCTGTTCAT 60.105 40.000 13.29 0.00 39.17 2.57
5120 6366 4.219725 TGCTAGCCGTATATATGCTGTTCA 59.780 41.667 13.29 9.94 36.57 3.18
5121 6367 4.563184 GTGCTAGCCGTATATATGCTGTTC 59.437 45.833 13.29 8.20 36.57 3.18
5122 6368 4.021456 TGTGCTAGCCGTATATATGCTGTT 60.021 41.667 13.29 0.00 36.57 3.16
5123 6369 3.509967 TGTGCTAGCCGTATATATGCTGT 59.490 43.478 13.29 0.00 36.57 4.40
5124 6370 4.110036 TGTGCTAGCCGTATATATGCTG 57.890 45.455 13.29 9.51 36.57 4.41
5125 6371 4.402474 TCATGTGCTAGCCGTATATATGCT 59.598 41.667 13.29 12.62 39.10 3.79
5126 6372 4.682787 TCATGTGCTAGCCGTATATATGC 58.317 43.478 13.29 0.00 0.00 3.14
5127 6373 5.230097 CGTTCATGTGCTAGCCGTATATATG 59.770 44.000 13.29 7.29 0.00 1.78
5128 6374 5.124936 TCGTTCATGTGCTAGCCGTATATAT 59.875 40.000 13.29 0.00 0.00 0.86
5129 6375 4.456566 TCGTTCATGTGCTAGCCGTATATA 59.543 41.667 13.29 0.00 0.00 0.86
5130 6376 3.254903 TCGTTCATGTGCTAGCCGTATAT 59.745 43.478 13.29 0.00 0.00 0.86
5131 6377 2.619646 TCGTTCATGTGCTAGCCGTATA 59.380 45.455 13.29 0.00 0.00 1.47
5132 6378 1.407618 TCGTTCATGTGCTAGCCGTAT 59.592 47.619 13.29 0.69 0.00 3.06
5133 6379 0.812549 TCGTTCATGTGCTAGCCGTA 59.187 50.000 13.29 0.00 0.00 4.02
5134 6380 0.458543 CTCGTTCATGTGCTAGCCGT 60.459 55.000 13.29 1.98 0.00 5.68
5135 6381 0.458543 ACTCGTTCATGTGCTAGCCG 60.459 55.000 13.29 6.61 0.00 5.52
5136 6382 2.579207 TACTCGTTCATGTGCTAGCC 57.421 50.000 13.29 4.15 0.00 3.93
5137 6383 5.175856 CCTATTTACTCGTTCATGTGCTAGC 59.824 44.000 8.10 8.10 0.00 3.42
5138 6384 5.692204 CCCTATTTACTCGTTCATGTGCTAG 59.308 44.000 0.00 0.00 0.00 3.42
5139 6385 5.452776 CCCCTATTTACTCGTTCATGTGCTA 60.453 44.000 0.00 0.00 0.00 3.49
5140 6386 4.442706 CCCTATTTACTCGTTCATGTGCT 58.557 43.478 0.00 0.00 0.00 4.40
5141 6387 3.560068 CCCCTATTTACTCGTTCATGTGC 59.440 47.826 0.00 0.00 0.00 4.57
5142 6388 5.018539 TCCCCTATTTACTCGTTCATGTG 57.981 43.478 0.00 0.00 0.00 3.21
5143 6389 5.365605 TCATCCCCTATTTACTCGTTCATGT 59.634 40.000 0.00 0.00 0.00 3.21
5144 6390 5.853936 TCATCCCCTATTTACTCGTTCATG 58.146 41.667 0.00 0.00 0.00 3.07
5145 6391 6.572509 CGATCATCCCCTATTTACTCGTTCAT 60.573 42.308 0.00 0.00 0.00 2.57
5146 6392 5.278808 CGATCATCCCCTATTTACTCGTTCA 60.279 44.000 0.00 0.00 0.00 3.18
5147 6393 5.048224 TCGATCATCCCCTATTTACTCGTTC 60.048 44.000 0.00 0.00 0.00 3.95
5148 6394 4.831155 TCGATCATCCCCTATTTACTCGTT 59.169 41.667 0.00 0.00 0.00 3.85
5149 6395 4.404640 TCGATCATCCCCTATTTACTCGT 58.595 43.478 0.00 0.00 0.00 4.18
5150 6396 4.459685 ACTCGATCATCCCCTATTTACTCG 59.540 45.833 0.00 0.00 0.00 4.18
5151 6397 5.477291 TGACTCGATCATCCCCTATTTACTC 59.523 44.000 0.00 0.00 29.99 2.59
5152 6398 5.394738 TGACTCGATCATCCCCTATTTACT 58.605 41.667 0.00 0.00 29.99 2.24
5153 6399 5.723672 TGACTCGATCATCCCCTATTTAC 57.276 43.478 0.00 0.00 29.99 2.01
5154 6400 6.380274 GGTATGACTCGATCATCCCCTATTTA 59.620 42.308 11.87 0.00 45.52 1.40
5155 6401 5.187967 GGTATGACTCGATCATCCCCTATTT 59.812 44.000 11.87 0.00 45.52 1.40
5156 6402 4.712337 GGTATGACTCGATCATCCCCTATT 59.288 45.833 11.87 0.00 45.52 1.73
5157 6403 4.282496 GGTATGACTCGATCATCCCCTAT 58.718 47.826 11.87 0.00 45.52 2.57
5158 6404 3.698289 GGTATGACTCGATCATCCCCTA 58.302 50.000 11.87 0.00 45.52 3.53
5159 6405 2.530701 GGTATGACTCGATCATCCCCT 58.469 52.381 11.87 0.00 45.52 4.79
5161 6407 2.494073 GAGGGTATGACTCGATCATCCC 59.506 54.545 21.32 21.32 45.52 3.85
5162 6408 2.494073 GGAGGGTATGACTCGATCATCC 59.506 54.545 11.87 12.20 45.52 3.51
5163 6409 2.162608 CGGAGGGTATGACTCGATCATC 59.837 54.545 11.87 0.16 45.52 2.92
5165 6411 1.605753 CGGAGGGTATGACTCGATCA 58.394 55.000 0.00 0.00 43.13 2.92
5211 6457 4.853050 GATGCTGAGGCTGCCGCT 62.853 66.667 22.83 1.42 39.59 5.52
5230 6476 1.021920 GTCAAGAAGAAGGCCTCGGC 61.022 60.000 5.23 0.00 41.06 5.54
5231 6477 0.737715 CGTCAAGAAGAAGGCCTCGG 60.738 60.000 5.23 0.00 0.00 4.63
5232 6478 0.737715 CCGTCAAGAAGAAGGCCTCG 60.738 60.000 5.23 0.81 39.05 4.63
5233 6479 3.145228 CCGTCAAGAAGAAGGCCTC 57.855 57.895 5.23 0.00 39.05 4.70
5238 6484 2.730672 CGCCGCCGTCAAGAAGAAG 61.731 63.158 0.00 0.00 0.00 2.85
5239 6485 2.736995 CGCCGCCGTCAAGAAGAA 60.737 61.111 0.00 0.00 0.00 2.52
5240 6486 3.986006 ACGCCGCCGTCAAGAAGA 61.986 61.111 0.00 0.00 46.39 2.87
5255 6501 4.082523 ACCCCATGGCTGACGACG 62.083 66.667 6.09 0.00 33.59 5.12
5256 6502 2.125106 GACCCCATGGCTGACGAC 60.125 66.667 6.09 0.00 33.59 4.34
5257 6503 3.770040 CGACCCCATGGCTGACGA 61.770 66.667 6.09 0.00 33.59 4.20
5258 6504 3.094062 ATCGACCCCATGGCTGACG 62.094 63.158 6.09 11.76 33.59 4.35
5259 6505 1.524621 CATCGACCCCATGGCTGAC 60.525 63.158 6.09 0.00 33.59 3.51
5260 6506 2.910360 CATCGACCCCATGGCTGA 59.090 61.111 6.09 0.75 33.59 4.26
5261 6507 2.903855 GCATCGACCCCATGGCTG 60.904 66.667 6.09 1.56 33.59 4.85
5262 6508 3.410628 TGCATCGACCCCATGGCT 61.411 61.111 6.09 0.00 33.59 4.75
5263 6509 2.903855 CTGCATCGACCCCATGGC 60.904 66.667 6.09 0.00 33.59 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.