Multiple sequence alignment - TraesCS1D01G054300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G054300 chr1D 100.000 2729 0 0 1 2729 35785547 35788275 0.000000e+00 5040.0
1 TraesCS1D01G054300 chr1D 85.967 734 60 23 1214 1918 35870520 35871239 0.000000e+00 745.0
2 TraesCS1D01G054300 chr1D 83.389 596 71 20 1216 1786 35815659 35816251 6.690000e-146 527.0
3 TraesCS1D01G054300 chr1D 83.624 574 63 19 1214 1763 35917233 35917799 6.740000e-141 510.0
4 TraesCS1D01G054300 chr1D 90.608 362 28 4 2371 2729 35926299 35926657 2.460000e-130 475.0
5 TraesCS1D01G054300 chr1D 82.007 578 59 22 641 1178 35869855 35870427 1.490000e-122 449.0
6 TraesCS1D01G054300 chr1D 91.753 291 21 2 2384 2674 35886195 35886482 4.230000e-108 401.0
7 TraesCS1D01G054300 chr1D 92.701 274 12 2 247 515 480712334 480712064 3.300000e-104 388.0
8 TraesCS1D01G054300 chr1D 92.391 276 14 1 247 515 431804267 431803992 1.190000e-103 387.0
9 TraesCS1D01G054300 chr1D 82.423 421 38 20 772 1160 35815133 35815549 4.350000e-88 335.0
10 TraesCS1D01G054300 chr1D 80.278 431 39 26 768 1156 35907677 35908103 1.600000e-72 283.0
11 TraesCS1D01G054300 chr1A 94.537 1446 41 7 628 2063 34533969 34535386 0.000000e+00 2198.0
12 TraesCS1D01G054300 chr1A 91.054 626 44 3 2114 2729 34535388 34536011 0.000000e+00 835.0
13 TraesCS1D01G054300 chr1A 84.588 558 63 19 1214 1753 34878228 34878780 1.440000e-147 532.0
14 TraesCS1D01G054300 chr1A 92.837 349 18 5 2386 2729 34707218 34707564 1.460000e-137 499.0
15 TraesCS1D01G054300 chr1A 92.816 348 20 2 2386 2729 34859720 34860066 1.460000e-137 499.0
16 TraesCS1D01G054300 chr1A 90.305 361 31 3 2371 2729 34885254 34885612 1.140000e-128 470.0
17 TraesCS1D01G054300 chr1A 84.742 485 51 15 1444 1922 34857829 34858296 5.320000e-127 464.0
18 TraesCS1D01G054300 chr1A 91.844 282 22 1 1474 1754 34705553 34705834 2.550000e-105 392.0
19 TraesCS1D01G054300 chr1A 82.883 444 42 20 768 1178 34877715 34878157 4.290000e-98 368.0
20 TraesCS1D01G054300 chr1A 83.385 325 33 11 641 944 34851270 34851594 5.750000e-72 281.0
21 TraesCS1D01G054300 chr1A 93.122 189 12 1 1214 1401 34705241 34705429 2.680000e-70 276.0
22 TraesCS1D01G054300 chr1A 90.860 186 17 0 993 1178 34704958 34705143 1.620000e-62 250.0
23 TraesCS1D01G054300 chr1A 87.225 227 12 10 1236 1446 34857569 34857794 2.710000e-60 243.0
24 TraesCS1D01G054300 chr1A 88.172 186 22 0 993 1178 34857252 34857437 3.540000e-54 222.0
25 TraesCS1D01G054300 chr1A 95.789 95 4 0 1307 1401 34858875 34858969 1.310000e-33 154.0
26 TraesCS1D01G054300 chr1B 93.664 947 55 3 1784 2729 54972361 54973303 0.000000e+00 1411.0
27 TraesCS1D01G054300 chr1B 82.382 1226 105 49 686 1815 54963638 54964848 0.000000e+00 965.0
28 TraesCS1D01G054300 chr1B 82.300 1226 106 49 686 1815 55006923 55008133 0.000000e+00 959.0
29 TraesCS1D01G054300 chr1B 92.756 566 37 1 1784 2349 55010957 55011518 0.000000e+00 815.0
30 TraesCS1D01G054300 chr1B 95.597 318 13 1 2412 2729 55011516 55011832 2.420000e-140 508.0
31 TraesCS1D01G054300 chr1B 87.879 66 4 3 2 64 57699573 57699509 1.050000e-09 75.0
32 TraesCS1D01G054300 chr7D 94.862 253 12 1 244 496 335464336 335464587 7.080000e-106 394.0
33 TraesCS1D01G054300 chr7D 92.989 271 16 2 244 514 203402186 203402453 2.550000e-105 392.0
34 TraesCS1D01G054300 chr7D 91.166 283 13 3 244 514 185551866 185552148 9.230000e-100 374.0
35 TraesCS1D01G054300 chr7D 97.326 187 5 0 72 258 46849758 46849944 4.390000e-83 318.0
36 TraesCS1D01G054300 chr7D 90.222 225 18 3 72 292 6005181 6005405 9.560000e-75 291.0
37 TraesCS1D01G054300 chr7D 94.068 118 5 2 510 627 75166710 75166595 7.770000e-41 178.0
38 TraesCS1D01G054300 chr7D 92.308 117 7 2 510 626 5526267 5526381 6.050000e-37 165.0
39 TraesCS1D01G054300 chr7D 95.238 63 3 0 4 66 75166765 75166703 1.730000e-17 100.0
40 TraesCS1D01G054300 chr7D 88.889 54 5 1 510 563 538902764 538902712 6.310000e-07 65.8
41 TraesCS1D01G054300 chr5B 93.600 250 16 0 247 496 81688545 81688794 9.230000e-100 374.0
42 TraesCS1D01G054300 chrUn 87.850 321 29 4 2418 2729 360009 360328 4.290000e-98 368.0
43 TraesCS1D01G054300 chr7A 91.209 273 19 1 247 514 724252450 724252178 1.540000e-97 366.0
44 TraesCS1D01G054300 chr7A 87.037 54 6 1 510 563 733029921 733029869 2.930000e-05 60.2
45 TraesCS1D01G054300 chr2B 90.909 275 22 2 244 518 459580581 459580852 1.540000e-97 366.0
46 TraesCS1D01G054300 chr2B 89.328 253 19 2 248 493 799044948 799044697 7.340000e-81 311.0
47 TraesCS1D01G054300 chr2B 87.654 243 22 3 249 484 616659466 616659225 2.680000e-70 276.0
48 TraesCS1D01G054300 chr3B 91.078 269 21 2 247 515 470074150 470073885 7.180000e-96 361.0
49 TraesCS1D01G054300 chr3B 90.323 62 3 2 6 64 68196777 68196716 8.100000e-11 78.7
50 TraesCS1D01G054300 chr3B 88.889 54 5 1 510 563 654063226 654063174 6.310000e-07 65.8
51 TraesCS1D01G054300 chr3B 88.889 54 5 1 510 563 654063662 654063610 6.310000e-07 65.8
52 TraesCS1D01G054300 chr4D 97.340 188 5 0 71 258 76102578 76102391 1.220000e-83 320.0
53 TraesCS1D01G054300 chr4D 97.326 187 5 0 72 258 24774829 24774643 4.390000e-83 318.0
54 TraesCS1D01G054300 chr4D 96.809 188 6 0 71 258 306266373 306266560 5.670000e-82 315.0
55 TraesCS1D01G054300 chr4D 96.809 188 6 0 71 258 442759367 442759554 5.670000e-82 315.0
56 TraesCS1D01G054300 chr2D 96.809 188 6 0 71 258 473906607 473906794 5.670000e-82 315.0
57 TraesCS1D01G054300 chr2D 95.767 189 8 0 70 258 534852151 534851963 3.410000e-79 305.0
58 TraesCS1D01G054300 chr6D 93.171 205 13 1 55 258 78285088 78284884 1.590000e-77 300.0
59 TraesCS1D01G054300 chr4A 82.249 338 35 13 842 1157 536859296 536859630 4.480000e-68 268.0
60 TraesCS1D01G054300 chr4A 81.953 338 36 16 842 1157 521612719 521613053 2.080000e-66 263.0
61 TraesCS1D01G054300 chr5A 91.026 78 7 0 549 626 30786580 30786503 3.720000e-19 106.0
62 TraesCS1D01G054300 chr6A 97.143 35 1 0 1972 2006 473616684 473616718 2.930000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G054300 chr1D 35785547 35788275 2728 False 5040.000000 5040 100.000000 1 2729 1 chr1D.!!$F1 2728
1 TraesCS1D01G054300 chr1D 35869855 35871239 1384 False 597.000000 745 83.987000 641 1918 2 chr1D.!!$F7 1277
2 TraesCS1D01G054300 chr1D 35917233 35917799 566 False 510.000000 510 83.624000 1214 1763 1 chr1D.!!$F4 549
3 TraesCS1D01G054300 chr1D 35815133 35816251 1118 False 431.000000 527 82.906000 772 1786 2 chr1D.!!$F6 1014
4 TraesCS1D01G054300 chr1A 34533969 34536011 2042 False 1516.500000 2198 92.795500 628 2729 2 chr1A.!!$F3 2101
5 TraesCS1D01G054300 chr1A 34877715 34878780 1065 False 450.000000 532 83.735500 768 1753 2 chr1A.!!$F6 985
6 TraesCS1D01G054300 chr1A 34704958 34707564 2606 False 354.250000 499 92.165750 993 2729 4 chr1A.!!$F4 1736
7 TraesCS1D01G054300 chr1A 34857252 34860066 2814 False 316.400000 499 89.748800 993 2729 5 chr1A.!!$F5 1736
8 TraesCS1D01G054300 chr1B 54972361 54973303 942 False 1411.000000 1411 93.664000 1784 2729 1 chr1B.!!$F2 945
9 TraesCS1D01G054300 chr1B 54963638 54964848 1210 False 965.000000 965 82.382000 686 1815 1 chr1B.!!$F1 1129
10 TraesCS1D01G054300 chr1B 55006923 55011832 4909 False 760.666667 959 90.217667 686 2729 3 chr1B.!!$F3 2043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.031817 AGGCTTGGGCTTGGCATATT 60.032 50.0 0.0 0.0 33.67 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 5089 1.737793 GGAAGGCGTTCGATTTGTCAT 59.262 47.619 12.65 0.0 32.92 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.034059 AGTTGGAGGTGCAGAGTTCG 59.966 55.000 0.00 0.00 0.00 3.95
20 21 0.033504 GTTGGAGGTGCAGAGTTCGA 59.966 55.000 0.00 0.00 0.00 3.71
21 22 0.756294 TTGGAGGTGCAGAGTTCGAA 59.244 50.000 0.00 0.00 0.00 3.71
22 23 0.976641 TGGAGGTGCAGAGTTCGAAT 59.023 50.000 0.00 0.00 0.00 3.34
23 24 1.066858 TGGAGGTGCAGAGTTCGAATC 60.067 52.381 0.00 0.15 0.00 2.52
24 25 1.646189 GAGGTGCAGAGTTCGAATCC 58.354 55.000 0.00 0.00 0.00 3.01
25 26 0.976641 AGGTGCAGAGTTCGAATCCA 59.023 50.000 0.00 0.00 0.00 3.41
26 27 1.556911 AGGTGCAGAGTTCGAATCCAT 59.443 47.619 0.00 0.00 0.00 3.41
27 28 1.667724 GGTGCAGAGTTCGAATCCATG 59.332 52.381 0.00 0.00 0.00 3.66
28 29 1.063174 GTGCAGAGTTCGAATCCATGC 59.937 52.381 16.10 16.10 0.00 4.06
29 30 0.302890 GCAGAGTTCGAATCCATGCG 59.697 55.000 0.00 0.00 0.00 4.73
30 31 1.926561 CAGAGTTCGAATCCATGCGA 58.073 50.000 0.00 0.00 34.32 5.10
31 32 1.857217 CAGAGTTCGAATCCATGCGAG 59.143 52.381 0.00 0.00 37.85 5.03
32 33 1.202463 AGAGTTCGAATCCATGCGAGG 60.202 52.381 0.00 0.00 37.85 4.63
33 34 0.537188 AGTTCGAATCCATGCGAGGT 59.463 50.000 0.00 0.00 37.85 3.85
34 35 0.931005 GTTCGAATCCATGCGAGGTC 59.069 55.000 0.00 0.00 37.85 3.85
35 36 0.534873 TTCGAATCCATGCGAGGTCA 59.465 50.000 0.00 0.00 37.85 4.02
36 37 0.179111 TCGAATCCATGCGAGGTCAC 60.179 55.000 0.00 0.00 32.13 3.67
37 38 0.179100 CGAATCCATGCGAGGTCACT 60.179 55.000 0.00 0.00 0.00 3.41
38 39 1.576356 GAATCCATGCGAGGTCACTC 58.424 55.000 0.00 0.00 40.44 3.51
39 40 0.904649 AATCCATGCGAGGTCACTCA 59.095 50.000 0.00 0.00 44.17 3.41
40 41 0.904649 ATCCATGCGAGGTCACTCAA 59.095 50.000 0.00 0.00 44.17 3.02
41 42 0.904649 TCCATGCGAGGTCACTCAAT 59.095 50.000 0.00 0.00 44.17 2.57
42 43 1.278985 TCCATGCGAGGTCACTCAATT 59.721 47.619 0.00 0.00 44.17 2.32
43 44 2.499693 TCCATGCGAGGTCACTCAATTA 59.500 45.455 0.00 0.00 44.17 1.40
44 45 3.134623 TCCATGCGAGGTCACTCAATTAT 59.865 43.478 0.00 0.00 44.17 1.28
45 46 3.879295 CCATGCGAGGTCACTCAATTATT 59.121 43.478 0.00 0.00 44.17 1.40
46 47 4.336433 CCATGCGAGGTCACTCAATTATTT 59.664 41.667 0.00 0.00 44.17 1.40
47 48 5.163622 CCATGCGAGGTCACTCAATTATTTT 60.164 40.000 0.00 0.00 44.17 1.82
48 49 5.957842 TGCGAGGTCACTCAATTATTTTT 57.042 34.783 0.00 0.00 44.17 1.94
76 77 4.910456 CGAACATATCGCTACTGTTAGTCC 59.090 45.833 0.00 0.00 45.89 3.85
77 78 5.277876 CGAACATATCGCTACTGTTAGTCCT 60.278 44.000 0.00 0.00 45.89 3.85
78 79 5.440234 ACATATCGCTACTGTTAGTCCTG 57.560 43.478 0.00 0.00 0.00 3.86
79 80 4.278669 ACATATCGCTACTGTTAGTCCTGG 59.721 45.833 0.00 0.00 0.00 4.45
80 81 0.815734 TCGCTACTGTTAGTCCTGGC 59.184 55.000 0.00 0.00 0.00 4.85
81 82 0.179108 CGCTACTGTTAGTCCTGGCC 60.179 60.000 0.00 0.00 0.00 5.36
82 83 0.902531 GCTACTGTTAGTCCTGGCCA 59.097 55.000 4.71 4.71 0.00 5.36
83 84 1.486726 GCTACTGTTAGTCCTGGCCAT 59.513 52.381 5.51 0.00 0.00 4.40
84 85 2.483889 GCTACTGTTAGTCCTGGCCATC 60.484 54.545 5.51 0.00 0.00 3.51
85 86 1.958288 ACTGTTAGTCCTGGCCATCT 58.042 50.000 5.51 8.22 0.00 2.90
86 87 1.834263 ACTGTTAGTCCTGGCCATCTC 59.166 52.381 5.51 0.00 0.00 2.75
87 88 1.833630 CTGTTAGTCCTGGCCATCTCA 59.166 52.381 5.51 0.30 0.00 3.27
88 89 1.833630 TGTTAGTCCTGGCCATCTCAG 59.166 52.381 5.51 0.00 0.00 3.35
129 130 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
130 131 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
131 132 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
132 133 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
138 139 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
139 140 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
140 141 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
183 184 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
184 185 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
185 186 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
186 187 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
187 188 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
188 189 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
189 190 0.613012 GGCCTGAGTTTTGAGCCCAT 60.613 55.000 0.00 0.00 37.66 4.00
190 191 0.813821 GCCTGAGTTTTGAGCCCATC 59.186 55.000 0.00 0.00 0.00 3.51
191 192 1.887956 GCCTGAGTTTTGAGCCCATCA 60.888 52.381 0.00 0.00 35.62 3.07
192 193 2.089980 CCTGAGTTTTGAGCCCATCAG 58.910 52.381 0.00 0.00 39.68 2.90
193 194 1.471684 CTGAGTTTTGAGCCCATCAGC 59.528 52.381 0.00 0.00 39.68 4.26
194 195 1.202915 TGAGTTTTGAGCCCATCAGCA 60.203 47.619 0.00 0.00 39.68 4.41
195 196 1.471684 GAGTTTTGAGCCCATCAGCAG 59.528 52.381 0.00 0.00 39.68 4.24
196 197 0.529378 GTTTTGAGCCCATCAGCAGG 59.471 55.000 0.00 0.00 39.68 4.85
202 203 4.517934 CCCATCAGCAGGGCCTGG 62.518 72.222 33.43 18.77 39.96 4.45
203 204 3.414193 CCATCAGCAGGGCCTGGA 61.414 66.667 33.43 23.33 33.64 3.86
204 205 2.124403 CATCAGCAGGGCCTGGAC 60.124 66.667 33.43 18.62 33.64 4.02
205 206 2.611800 ATCAGCAGGGCCTGGACA 60.612 61.111 33.43 4.73 33.64 4.02
206 207 2.677289 ATCAGCAGGGCCTGGACAG 61.677 63.158 33.43 15.52 33.64 3.51
215 216 3.655211 CCTGGACAGGCTTGGGCT 61.655 66.667 5.27 0.00 42.44 5.19
216 217 2.437897 CTGGACAGGCTTGGGCTT 59.562 61.111 0.00 0.00 35.88 4.35
221 222 2.682494 CAGGCTTGGGCTTGGCAT 60.682 61.111 0.00 0.00 41.09 4.40
222 223 1.380246 CAGGCTTGGGCTTGGCATA 60.380 57.895 0.00 0.00 41.09 3.14
223 224 0.757935 CAGGCTTGGGCTTGGCATAT 60.758 55.000 0.00 0.00 41.09 1.78
224 225 0.031817 AGGCTTGGGCTTGGCATATT 60.032 50.000 0.00 0.00 33.67 1.28
225 226 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
226 227 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
227 228 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
240 241 6.100404 GGCATATTGGCATTTTAAGGATGA 57.900 37.500 0.00 0.00 43.14 2.92
241 242 6.161381 GGCATATTGGCATTTTAAGGATGAG 58.839 40.000 0.00 0.00 43.14 2.90
242 243 6.161381 GCATATTGGCATTTTAAGGATGAGG 58.839 40.000 0.00 0.00 0.00 3.86
243 244 4.677673 ATTGGCATTTTAAGGATGAGGC 57.322 40.909 0.00 0.00 0.00 4.70
244 245 2.387757 TGGCATTTTAAGGATGAGGCC 58.612 47.619 0.00 0.00 40.51 5.19
245 246 1.688735 GGCATTTTAAGGATGAGGCCC 59.311 52.381 0.00 0.00 34.17 5.80
246 247 1.338020 GCATTTTAAGGATGAGGCCCG 59.662 52.381 0.00 0.00 0.00 6.13
247 248 1.956477 CATTTTAAGGATGAGGCCCGG 59.044 52.381 0.00 0.00 0.00 5.73
248 249 0.257616 TTTTAAGGATGAGGCCCGGG 59.742 55.000 19.09 19.09 0.00 5.73
249 250 2.279037 TTTAAGGATGAGGCCCGGGC 62.279 60.000 38.57 38.57 41.06 6.13
298 299 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
299 300 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
300 301 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
301 302 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
302 303 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
303 304 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
304 305 0.613012 GGCCTGAGTTTTGAGCCCAT 60.613 55.000 0.00 0.00 37.66 4.00
305 306 0.813821 GCCTGAGTTTTGAGCCCATC 59.186 55.000 0.00 0.00 0.00 3.51
306 307 1.887956 GCCTGAGTTTTGAGCCCATCA 60.888 52.381 0.00 0.00 35.62 3.07
307 308 2.089980 CCTGAGTTTTGAGCCCATCAG 58.910 52.381 0.00 0.00 39.68 2.90
308 309 1.471684 CTGAGTTTTGAGCCCATCAGC 59.528 52.381 0.00 0.00 39.68 4.26
309 310 1.202915 TGAGTTTTGAGCCCATCAGCA 60.203 47.619 0.00 0.00 39.68 4.41
310 311 1.471684 GAGTTTTGAGCCCATCAGCAG 59.528 52.381 0.00 0.00 39.68 4.24
311 312 0.529378 GTTTTGAGCCCATCAGCAGG 59.471 55.000 0.00 0.00 39.68 4.85
317 318 4.517934 CCCATCAGCAGGGCCTGG 62.518 72.222 33.43 18.77 39.96 4.45
318 319 3.414193 CCATCAGCAGGGCCTGGA 61.414 66.667 33.43 23.33 33.64 3.86
319 320 2.124403 CATCAGCAGGGCCTGGAC 60.124 66.667 33.43 18.62 33.64 4.02
320 321 2.611800 ATCAGCAGGGCCTGGACA 60.612 61.111 33.43 4.73 33.64 4.02
321 322 2.677289 ATCAGCAGGGCCTGGACAG 61.677 63.158 33.43 15.52 33.64 3.51
330 331 3.655211 CCTGGACAGGCTTGGGCT 61.655 66.667 5.27 0.00 42.44 5.19
331 332 2.437897 CTGGACAGGCTTGGGCTT 59.562 61.111 0.00 0.00 35.88 4.35
333 334 2.416107 CTGGACAGGCTTGGGCTTGA 62.416 60.000 0.00 0.00 46.58 3.02
334 335 1.973812 GGACAGGCTTGGGCTTGAC 60.974 63.158 0.00 1.13 46.58 3.18
335 336 1.228245 GACAGGCTTGGGCTTGACA 60.228 57.895 0.00 0.00 46.58 3.58
336 337 0.610232 GACAGGCTTGGGCTTGACAT 60.610 55.000 0.00 0.00 46.58 3.06
337 338 0.698238 ACAGGCTTGGGCTTGACATA 59.302 50.000 0.00 0.00 46.58 2.29
338 339 1.285962 ACAGGCTTGGGCTTGACATAT 59.714 47.619 0.00 0.00 46.58 1.78
339 340 2.291800 ACAGGCTTGGGCTTGACATATT 60.292 45.455 0.00 0.00 46.58 1.28
340 341 2.100252 CAGGCTTGGGCTTGACATATTG 59.900 50.000 0.00 0.00 46.58 1.90
341 342 1.410153 GGCTTGGGCTTGACATATTGG 59.590 52.381 0.00 0.00 38.73 3.16
342 343 1.202452 GCTTGGGCTTGACATATTGGC 60.202 52.381 0.00 0.00 35.22 4.52
343 344 2.101783 CTTGGGCTTGACATATTGGCA 58.898 47.619 0.00 0.00 30.30 4.92
344 345 2.457813 TGGGCTTGACATATTGGCAT 57.542 45.000 0.00 0.00 33.90 4.40
345 346 2.749600 TGGGCTTGACATATTGGCATT 58.250 42.857 0.00 0.00 33.90 3.56
346 347 3.106054 TGGGCTTGACATATTGGCATTT 58.894 40.909 0.00 0.00 33.90 2.32
347 348 3.518705 TGGGCTTGACATATTGGCATTTT 59.481 39.130 0.00 0.00 33.90 1.82
348 349 4.713814 TGGGCTTGACATATTGGCATTTTA 59.286 37.500 0.00 0.00 33.90 1.52
349 350 5.188555 TGGGCTTGACATATTGGCATTTTAA 59.811 36.000 0.00 0.00 33.90 1.52
350 351 5.754890 GGGCTTGACATATTGGCATTTTAAG 59.245 40.000 0.00 0.00 33.90 1.85
351 352 5.754890 GGCTTGACATATTGGCATTTTAAGG 59.245 40.000 0.00 0.00 33.90 2.69
352 353 6.406849 GGCTTGACATATTGGCATTTTAAGGA 60.407 38.462 0.00 0.00 33.90 3.36
353 354 7.212274 GCTTGACATATTGGCATTTTAAGGAT 58.788 34.615 0.00 0.00 33.90 3.24
354 355 7.170320 GCTTGACATATTGGCATTTTAAGGATG 59.830 37.037 0.00 0.00 33.90 3.51
355 356 7.894753 TGACATATTGGCATTTTAAGGATGA 57.105 32.000 0.00 0.00 24.43 2.92
356 357 7.944061 TGACATATTGGCATTTTAAGGATGAG 58.056 34.615 0.00 0.00 24.43 2.90
357 358 7.014518 TGACATATTGGCATTTTAAGGATGAGG 59.985 37.037 0.00 0.00 24.43 3.86
358 359 4.677673 ATTGGCATTTTAAGGATGAGGC 57.322 40.909 0.00 0.00 0.00 4.70
359 360 2.387757 TGGCATTTTAAGGATGAGGCC 58.612 47.619 0.00 0.00 40.51 5.19
360 361 1.688735 GGCATTTTAAGGATGAGGCCC 59.311 52.381 0.00 0.00 34.17 5.80
361 362 1.338020 GCATTTTAAGGATGAGGCCCG 59.662 52.381 0.00 0.00 0.00 6.13
362 363 1.956477 CATTTTAAGGATGAGGCCCGG 59.044 52.381 0.00 0.00 0.00 5.73
363 364 0.395173 TTTTAAGGATGAGGCCCGGC 60.395 55.000 0.00 0.00 0.00 6.13
388 389 3.596362 CCCTAAGGGCTTTTCAGGG 57.404 57.895 3.08 3.08 40.10 4.45
389 390 0.684479 CCCTAAGGGCTTTTCAGGGC 60.684 60.000 4.44 0.00 39.62 5.19
390 391 0.332972 CCTAAGGGCTTTTCAGGGCT 59.667 55.000 0.00 0.00 0.00 5.19
391 392 1.272704 CCTAAGGGCTTTTCAGGGCTT 60.273 52.381 0.00 0.00 0.00 4.35
392 393 2.529632 CTAAGGGCTTTTCAGGGCTTT 58.470 47.619 0.00 0.00 33.62 3.51
393 394 1.806496 AAGGGCTTTTCAGGGCTTTT 58.194 45.000 0.00 0.00 0.00 2.27
394 395 1.806496 AGGGCTTTTCAGGGCTTTTT 58.194 45.000 0.00 0.00 0.00 1.94
395 396 2.970987 AGGGCTTTTCAGGGCTTTTTA 58.029 42.857 0.00 0.00 0.00 1.52
396 397 2.632996 AGGGCTTTTCAGGGCTTTTTAC 59.367 45.455 0.00 0.00 0.00 2.01
397 398 2.632996 GGGCTTTTCAGGGCTTTTTACT 59.367 45.455 0.00 0.00 0.00 2.24
398 399 3.830178 GGGCTTTTCAGGGCTTTTTACTA 59.170 43.478 0.00 0.00 0.00 1.82
399 400 4.082190 GGGCTTTTCAGGGCTTTTTACTAG 60.082 45.833 0.00 0.00 0.00 2.57
400 401 4.765339 GGCTTTTCAGGGCTTTTTACTAGA 59.235 41.667 0.00 0.00 0.00 2.43
401 402 5.419155 GGCTTTTCAGGGCTTTTTACTAGAT 59.581 40.000 0.00 0.00 0.00 1.98
402 403 6.325596 GCTTTTCAGGGCTTTTTACTAGATG 58.674 40.000 0.00 0.00 0.00 2.90
403 404 6.625960 GCTTTTCAGGGCTTTTTACTAGATGG 60.626 42.308 0.00 0.00 0.00 3.51
404 405 4.503714 TCAGGGCTTTTTACTAGATGGG 57.496 45.455 0.00 0.00 0.00 4.00
405 406 2.952310 CAGGGCTTTTTACTAGATGGGC 59.048 50.000 0.00 0.00 0.00 5.36
406 407 2.091830 AGGGCTTTTTACTAGATGGGCC 60.092 50.000 0.00 0.00 38.05 5.80
407 408 1.947456 GGCTTTTTACTAGATGGGCCG 59.053 52.381 0.00 0.00 0.00 6.13
408 409 1.947456 GCTTTTTACTAGATGGGCCGG 59.053 52.381 0.00 0.00 0.00 6.13
409 410 2.572290 CTTTTTACTAGATGGGCCGGG 58.428 52.381 2.18 0.00 0.00 5.73
410 411 0.181824 TTTTACTAGATGGGCCGGGC 59.818 55.000 22.00 22.00 0.00 6.13
411 412 0.693092 TTTACTAGATGGGCCGGGCT 60.693 55.000 28.80 9.11 0.00 5.19
412 413 0.693092 TTACTAGATGGGCCGGGCTT 60.693 55.000 28.80 15.95 0.00 4.35
413 414 1.407656 TACTAGATGGGCCGGGCTTG 61.408 60.000 28.80 11.34 0.00 4.01
414 415 3.482232 CTAGATGGGCCGGGCTTGG 62.482 68.421 28.80 9.42 0.00 3.61
422 423 2.600173 CCGGGCTTGGGCTTCAAA 60.600 61.111 0.00 0.00 38.73 2.69
423 424 2.206536 CCGGGCTTGGGCTTCAAAA 61.207 57.895 0.00 0.00 38.73 2.44
424 425 1.290009 CGGGCTTGGGCTTCAAAAG 59.710 57.895 0.00 0.00 38.73 2.27
425 426 1.463553 CGGGCTTGGGCTTCAAAAGT 61.464 55.000 0.00 0.00 38.73 2.66
426 427 1.627864 GGGCTTGGGCTTCAAAAGTA 58.372 50.000 0.00 0.00 38.73 2.24
427 428 1.546029 GGGCTTGGGCTTCAAAAGTAG 59.454 52.381 0.00 0.00 38.73 2.57
428 429 1.546029 GGCTTGGGCTTCAAAAGTAGG 59.454 52.381 0.00 0.00 38.73 3.18
429 430 2.239400 GCTTGGGCTTCAAAAGTAGGT 58.761 47.619 0.00 0.00 34.56 3.08
430 431 2.229062 GCTTGGGCTTCAAAAGTAGGTC 59.771 50.000 0.00 0.00 34.56 3.85
431 432 2.579410 TGGGCTTCAAAAGTAGGTCC 57.421 50.000 0.00 0.00 0.00 4.46
432 433 1.271163 TGGGCTTCAAAAGTAGGTCCG 60.271 52.381 0.00 0.00 0.00 4.79
433 434 1.002773 GGGCTTCAAAAGTAGGTCCGA 59.997 52.381 0.00 0.00 0.00 4.55
434 435 2.355818 GGGCTTCAAAAGTAGGTCCGAT 60.356 50.000 0.00 0.00 0.00 4.18
435 436 2.678336 GGCTTCAAAAGTAGGTCCGATG 59.322 50.000 0.00 0.00 0.00 3.84
436 437 3.596214 GCTTCAAAAGTAGGTCCGATGA 58.404 45.455 0.00 0.00 0.00 2.92
437 438 4.192317 GCTTCAAAAGTAGGTCCGATGAT 58.808 43.478 0.00 0.00 0.00 2.45
438 439 5.357257 GCTTCAAAAGTAGGTCCGATGATA 58.643 41.667 0.00 0.00 0.00 2.15
439 440 5.463724 GCTTCAAAAGTAGGTCCGATGATAG 59.536 44.000 0.00 0.00 0.00 2.08
440 441 5.531122 TCAAAAGTAGGTCCGATGATAGG 57.469 43.478 0.00 0.00 0.00 2.57
441 442 4.344102 TCAAAAGTAGGTCCGATGATAGGG 59.656 45.833 0.00 0.00 0.00 3.53
442 443 1.926108 AGTAGGTCCGATGATAGGGC 58.074 55.000 0.00 0.00 0.00 5.19
446 447 1.674057 GTCCGATGATAGGGCCTGG 59.326 63.158 18.53 7.77 0.00 4.45
447 448 1.536418 TCCGATGATAGGGCCTGGG 60.536 63.158 18.53 7.72 0.00 4.45
448 449 1.536418 CCGATGATAGGGCCTGGGA 60.536 63.158 18.53 0.00 0.00 4.37
449 450 1.548357 CCGATGATAGGGCCTGGGAG 61.548 65.000 18.53 2.38 0.00 4.30
450 451 1.548357 CGATGATAGGGCCTGGGAGG 61.548 65.000 18.53 0.00 38.80 4.30
451 452 1.151721 ATGATAGGGCCTGGGAGGG 60.152 63.158 18.53 0.00 35.37 4.30
468 469 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
469 470 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
470 471 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
471 472 1.246737 CCTGGGCCTCAGTTTTCTGC 61.247 60.000 16.96 0.00 46.59 4.26
472 473 1.228552 TGGGCCTCAGTTTTCTGCC 60.229 57.895 4.53 0.00 46.59 4.85
473 474 2.335712 GGGCCTCAGTTTTCTGCCG 61.336 63.158 0.84 0.00 46.59 5.69
474 475 1.600916 GGCCTCAGTTTTCTGCCGT 60.601 57.895 0.00 0.00 46.59 5.68
475 476 1.576421 GCCTCAGTTTTCTGCCGTG 59.424 57.895 0.00 0.00 46.59 4.94
476 477 1.856265 GCCTCAGTTTTCTGCCGTGG 61.856 60.000 0.00 0.00 46.59 4.94
477 478 1.237285 CCTCAGTTTTCTGCCGTGGG 61.237 60.000 0.00 0.00 46.59 4.61
487 488 2.650778 GCCGTGGGCTTTTTCAGG 59.349 61.111 0.00 0.00 46.69 3.86
488 489 3.573772 GCCGTGGGCTTTTTCAGGC 62.574 63.158 0.00 0.00 46.69 4.85
493 494 4.069232 GGCTTTTTCAGGCCCGGC 62.069 66.667 0.00 0.00 42.55 6.13
515 516 3.181526 GCCCATGGCCAGATATAGC 57.818 57.895 13.05 4.29 44.06 2.97
516 517 0.622665 GCCCATGGCCAGATATAGCT 59.377 55.000 13.05 0.00 44.06 3.32
517 518 1.839994 GCCCATGGCCAGATATAGCTA 59.160 52.381 13.05 0.00 44.06 3.32
518 519 2.420687 GCCCATGGCCAGATATAGCTAC 60.421 54.545 13.05 0.00 44.06 3.58
519 520 2.171448 CCCATGGCCAGATATAGCTACC 59.829 54.545 13.05 2.92 0.00 3.18
520 521 2.159043 CCATGGCCAGATATAGCTACCG 60.159 54.545 13.05 0.00 0.00 4.02
521 522 2.304221 TGGCCAGATATAGCTACCGT 57.696 50.000 0.00 0.00 0.00 4.83
522 523 3.444792 TGGCCAGATATAGCTACCGTA 57.555 47.619 0.00 0.00 0.00 4.02
523 524 3.977312 TGGCCAGATATAGCTACCGTAT 58.023 45.455 0.00 0.00 0.00 3.06
524 525 4.350245 TGGCCAGATATAGCTACCGTATT 58.650 43.478 0.00 0.00 0.00 1.89
525 526 4.159693 TGGCCAGATATAGCTACCGTATTG 59.840 45.833 0.00 0.00 0.00 1.90
526 527 4.159879 GGCCAGATATAGCTACCGTATTGT 59.840 45.833 0.00 0.00 0.00 2.71
527 528 5.103000 GCCAGATATAGCTACCGTATTGTG 58.897 45.833 0.00 0.00 0.00 3.33
528 529 5.103000 CCAGATATAGCTACCGTATTGTGC 58.897 45.833 0.00 0.00 0.00 4.57
529 530 4.793731 CAGATATAGCTACCGTATTGTGCG 59.206 45.833 0.00 0.00 0.00 5.34
530 531 4.698780 AGATATAGCTACCGTATTGTGCGA 59.301 41.667 0.00 0.00 0.00 5.10
531 532 2.768833 TAGCTACCGTATTGTGCGAG 57.231 50.000 0.00 0.00 0.00 5.03
532 533 0.527817 AGCTACCGTATTGTGCGAGC 60.528 55.000 0.00 0.00 31.94 5.03
533 534 1.808234 GCTACCGTATTGTGCGAGCG 61.808 60.000 0.00 0.00 0.00 5.03
534 535 1.808234 CTACCGTATTGTGCGAGCGC 61.808 60.000 8.08 8.08 42.35 5.92
535 536 2.274232 TACCGTATTGTGCGAGCGCT 62.274 55.000 11.27 11.27 42.51 5.92
536 537 1.587876 CCGTATTGTGCGAGCGCTA 60.588 57.895 11.50 3.49 42.51 4.26
537 538 1.553654 CGTATTGTGCGAGCGCTAC 59.446 57.895 11.50 5.72 42.51 3.58
538 539 0.866061 CGTATTGTGCGAGCGCTACT 60.866 55.000 11.50 0.00 42.51 2.57
539 540 0.572590 GTATTGTGCGAGCGCTACTG 59.427 55.000 11.50 4.34 42.51 2.74
540 541 1.145759 TATTGTGCGAGCGCTACTGC 61.146 55.000 11.50 16.19 42.51 4.40
550 551 2.820037 GCTACTGCGGCCACCTTC 60.820 66.667 2.24 0.00 0.00 3.46
551 552 2.982130 CTACTGCGGCCACCTTCT 59.018 61.111 2.24 0.00 0.00 2.85
552 553 1.296715 CTACTGCGGCCACCTTCTT 59.703 57.895 2.24 0.00 0.00 2.52
553 554 1.003839 TACTGCGGCCACCTTCTTG 60.004 57.895 2.24 0.00 0.00 3.02
554 555 2.463589 TACTGCGGCCACCTTCTTGG 62.464 60.000 2.24 0.00 42.93 3.61
555 556 4.659172 TGCGGCCACCTTCTTGGG 62.659 66.667 2.24 0.00 41.11 4.12
579 580 2.607811 CCTGTCAGGGGTATGCAGA 58.392 57.895 11.46 0.00 30.63 4.26
580 581 0.467384 CCTGTCAGGGGTATGCAGAG 59.533 60.000 11.46 0.00 30.63 3.35
581 582 0.179062 CTGTCAGGGGTATGCAGAGC 60.179 60.000 0.92 0.92 30.63 4.09
582 583 1.227380 GTCAGGGGTATGCAGAGCG 60.227 63.158 4.21 0.00 0.00 5.03
583 584 1.685765 TCAGGGGTATGCAGAGCGT 60.686 57.895 4.21 0.00 0.00 5.07
584 585 0.396556 TCAGGGGTATGCAGAGCGTA 60.397 55.000 4.21 0.00 0.00 4.42
585 586 0.681733 CAGGGGTATGCAGAGCGTAT 59.318 55.000 4.21 0.00 32.46 3.06
586 587 1.893137 CAGGGGTATGCAGAGCGTATA 59.107 52.381 4.21 0.00 32.46 1.47
587 588 1.893801 AGGGGTATGCAGAGCGTATAC 59.106 52.381 4.21 0.00 41.16 1.47
588 589 1.616865 GGGGTATGCAGAGCGTATACA 59.383 52.381 4.21 0.00 43.03 2.29
589 590 2.036733 GGGGTATGCAGAGCGTATACAA 59.963 50.000 4.21 0.00 43.03 2.41
590 591 3.318017 GGGTATGCAGAGCGTATACAAG 58.682 50.000 4.21 0.00 43.03 3.16
591 592 3.243771 GGGTATGCAGAGCGTATACAAGT 60.244 47.826 4.21 0.00 43.03 3.16
592 593 4.022589 GGGTATGCAGAGCGTATACAAGTA 60.023 45.833 4.21 0.00 43.03 2.24
593 594 4.916249 GGTATGCAGAGCGTATACAAGTAC 59.084 45.833 3.32 0.00 43.03 2.73
594 595 4.649088 ATGCAGAGCGTATACAAGTACA 57.351 40.909 3.32 0.00 0.00 2.90
595 596 4.028852 TGCAGAGCGTATACAAGTACAG 57.971 45.455 3.32 0.00 0.00 2.74
596 597 3.692593 TGCAGAGCGTATACAAGTACAGA 59.307 43.478 3.32 0.00 0.00 3.41
597 598 4.201920 TGCAGAGCGTATACAAGTACAGAG 60.202 45.833 3.32 0.00 0.00 3.35
598 599 4.283678 CAGAGCGTATACAAGTACAGAGC 58.716 47.826 3.32 0.00 0.00 4.09
599 600 3.002451 AGAGCGTATACAAGTACAGAGCG 59.998 47.826 3.32 0.00 0.00 5.03
600 601 2.033049 AGCGTATACAAGTACAGAGCGG 59.967 50.000 3.32 0.00 0.00 5.52
601 602 2.857489 GCGTATACAAGTACAGAGCGGG 60.857 54.545 3.32 0.00 0.00 6.13
602 603 2.357009 CGTATACAAGTACAGAGCGGGT 59.643 50.000 3.32 0.00 0.00 5.28
603 604 3.561310 CGTATACAAGTACAGAGCGGGTA 59.439 47.826 3.32 0.00 0.00 3.69
604 605 4.214971 CGTATACAAGTACAGAGCGGGTAT 59.785 45.833 3.32 0.00 0.00 2.73
605 606 5.278169 CGTATACAAGTACAGAGCGGGTATT 60.278 44.000 3.32 0.00 0.00 1.89
606 607 3.521947 ACAAGTACAGAGCGGGTATTC 57.478 47.619 0.00 0.00 0.00 1.75
607 608 2.167900 ACAAGTACAGAGCGGGTATTCC 59.832 50.000 0.00 0.00 0.00 3.01
608 609 2.154567 AGTACAGAGCGGGTATTCCA 57.845 50.000 0.00 0.00 34.36 3.53
609 610 1.755380 AGTACAGAGCGGGTATTCCAC 59.245 52.381 0.00 0.00 34.36 4.02
610 611 0.742505 TACAGAGCGGGTATTCCACG 59.257 55.000 0.00 0.00 34.36 4.94
611 612 1.255667 ACAGAGCGGGTATTCCACGT 61.256 55.000 0.00 0.00 34.36 4.49
612 613 0.527817 CAGAGCGGGTATTCCACGTC 60.528 60.000 0.00 0.00 34.36 4.34
613 614 0.968901 AGAGCGGGTATTCCACGTCA 60.969 55.000 0.00 0.00 34.36 4.35
614 615 0.108520 GAGCGGGTATTCCACGTCAA 60.109 55.000 0.00 0.00 34.36 3.18
615 616 0.322322 AGCGGGTATTCCACGTCAAA 59.678 50.000 0.00 0.00 34.36 2.69
616 617 1.158434 GCGGGTATTCCACGTCAAAA 58.842 50.000 0.00 0.00 34.36 2.44
617 618 1.129811 GCGGGTATTCCACGTCAAAAG 59.870 52.381 0.00 0.00 34.36 2.27
618 619 2.419667 CGGGTATTCCACGTCAAAAGT 58.580 47.619 0.00 0.00 34.36 2.66
619 620 2.414138 CGGGTATTCCACGTCAAAAGTC 59.586 50.000 0.00 0.00 34.36 3.01
620 621 2.745821 GGGTATTCCACGTCAAAAGTCC 59.254 50.000 0.00 0.00 35.00 3.85
621 622 3.404899 GGTATTCCACGTCAAAAGTCCA 58.595 45.455 0.00 0.00 0.00 4.02
622 623 4.007659 GGTATTCCACGTCAAAAGTCCAT 58.992 43.478 0.00 0.00 0.00 3.41
623 624 5.180271 GGTATTCCACGTCAAAAGTCCATA 58.820 41.667 0.00 0.00 0.00 2.74
624 625 5.820947 GGTATTCCACGTCAAAAGTCCATAT 59.179 40.000 0.00 0.00 0.00 1.78
625 626 6.317893 GGTATTCCACGTCAAAAGTCCATATT 59.682 38.462 0.00 0.00 0.00 1.28
626 627 7.496591 GGTATTCCACGTCAAAAGTCCATATTA 59.503 37.037 0.00 0.00 0.00 0.98
636 637 7.698130 GTCAAAAGTCCATATTATTGAGCACAC 59.302 37.037 0.00 0.00 0.00 3.82
787 814 2.504681 CCGTGAAATTGCTGCGCC 60.505 61.111 4.18 0.00 0.00 6.53
947 1012 5.699458 GCTCAAACCAAGCTACAAGTAAGTA 59.301 40.000 0.00 0.00 36.80 2.24
962 1027 7.701445 ACAAGTAAGTACCGTAGCTATAAGTG 58.299 38.462 0.00 0.00 0.00 3.16
1182 1330 3.118629 TCATCTGTCTCCAATGTAGCACC 60.119 47.826 0.00 0.00 0.00 5.01
1187 1335 4.960938 TGTCTCCAATGTAGCACCATATC 58.039 43.478 0.00 0.00 0.00 1.63
1191 1339 5.246203 TCTCCAATGTAGCACCATATCCTAC 59.754 44.000 0.00 0.00 33.72 3.18
1403 1614 2.451132 CCGACATAGTGAGTTGCTACG 58.549 52.381 0.00 0.00 0.00 3.51
1404 1615 2.159421 CCGACATAGTGAGTTGCTACGT 60.159 50.000 0.00 0.00 0.00 3.57
1405 1616 3.064408 CCGACATAGTGAGTTGCTACGTA 59.936 47.826 0.00 0.00 0.00 3.57
1815 4957 2.924185 GCATGGCGCTATGTCTGAT 58.076 52.632 30.74 0.00 37.77 2.90
1947 5089 6.234920 TCGTTCTTGGATTTTGATAACCAGA 58.765 36.000 0.00 0.00 33.85 3.86
1963 5105 1.062587 CCAGATGACAAATCGAACGCC 59.937 52.381 0.00 0.00 0.00 5.68
1970 5112 0.871722 CAAATCGAACGCCTTCCACA 59.128 50.000 0.00 0.00 0.00 4.17
1997 5139 7.384660 GCAATTTATGTTGTTCAAGGATGACAA 59.615 33.333 0.00 0.00 34.61 3.18
2063 5205 0.323302 TGTCAGGATTTGCCGTGCTA 59.677 50.000 0.00 0.00 43.43 3.49
2083 5225 6.017523 GTGCTAGCTGAAGAAATTTCCTATCC 60.018 42.308 17.23 1.62 0.00 2.59
2129 5271 5.236695 TGAAAAACGTTCGATTGGACATACA 59.763 36.000 0.00 0.00 0.00 2.29
2146 5288 5.312895 ACATACACTCCAAGCATACAACAA 58.687 37.500 0.00 0.00 0.00 2.83
2154 5296 6.264292 ACTCCAAGCATACAACAACACAATAA 59.736 34.615 0.00 0.00 0.00 1.40
2188 5330 9.278734 GTTCTTTATTAGCTTACATCTTTGCAC 57.721 33.333 0.00 0.00 0.00 4.57
2190 5332 8.450964 TCTTTATTAGCTTACATCTTTGCACAC 58.549 33.333 0.00 0.00 0.00 3.82
2204 5353 3.415457 TGCACACACCAATGATCAGTA 57.585 42.857 0.09 0.00 0.00 2.74
2220 5369 5.583854 TGATCAGTATCTCTGCTTTTCTTGC 59.416 40.000 0.00 0.00 43.32 4.01
2315 6643 2.428890 GAGATGTCTGGTCACCACTAGG 59.571 54.545 0.00 0.00 42.21 3.02
2329 6657 2.616510 CCACTAGGTCTCTTTGCCTTGG 60.617 54.545 0.00 0.00 36.38 3.61
2332 6660 1.228552 GGTCTCTTTGCCTTGGCCA 60.229 57.895 0.00 0.00 0.00 5.36
2355 6709 6.481976 CCACACGTTGTACATAATCCACATAT 59.518 38.462 0.00 0.00 0.00 1.78
2433 6790 9.567917 CGATATCGTAAAGAAACACACATAATG 57.432 33.333 17.06 0.00 34.11 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.034059 CGAACTCTGCACCTCCAACT 59.966 55.000 0.00 0.00 0.00 3.16
1 2 0.033504 TCGAACTCTGCACCTCCAAC 59.966 55.000 0.00 0.00 0.00 3.77
2 3 0.756294 TTCGAACTCTGCACCTCCAA 59.244 50.000 0.00 0.00 0.00 3.53
3 4 0.976641 ATTCGAACTCTGCACCTCCA 59.023 50.000 0.00 0.00 0.00 3.86
4 5 1.646189 GATTCGAACTCTGCACCTCC 58.354 55.000 0.00 0.00 0.00 4.30
5 6 1.066858 TGGATTCGAACTCTGCACCTC 60.067 52.381 0.00 0.00 0.00 3.85
6 7 0.976641 TGGATTCGAACTCTGCACCT 59.023 50.000 0.00 0.00 0.00 4.00
7 8 1.667724 CATGGATTCGAACTCTGCACC 59.332 52.381 0.00 0.00 0.00 5.01
8 9 1.063174 GCATGGATTCGAACTCTGCAC 59.937 52.381 0.00 0.00 0.00 4.57
9 10 1.372582 GCATGGATTCGAACTCTGCA 58.627 50.000 0.00 0.00 0.00 4.41
10 11 0.302890 CGCATGGATTCGAACTCTGC 59.697 55.000 0.00 6.87 0.00 4.26
11 12 1.857217 CTCGCATGGATTCGAACTCTG 59.143 52.381 0.00 0.00 34.07 3.35
12 13 1.202463 CCTCGCATGGATTCGAACTCT 60.202 52.381 0.00 0.00 34.07 3.24
13 14 1.212616 CCTCGCATGGATTCGAACTC 58.787 55.000 0.00 0.00 34.07 3.01
14 15 0.537188 ACCTCGCATGGATTCGAACT 59.463 50.000 0.00 0.00 34.07 3.01
15 16 0.931005 GACCTCGCATGGATTCGAAC 59.069 55.000 0.00 0.00 34.07 3.95
16 17 0.534873 TGACCTCGCATGGATTCGAA 59.465 50.000 0.00 0.00 34.07 3.71
17 18 0.179111 GTGACCTCGCATGGATTCGA 60.179 55.000 0.00 0.00 0.00 3.71
18 19 0.179100 AGTGACCTCGCATGGATTCG 60.179 55.000 0.00 0.00 0.00 3.34
19 20 1.134699 TGAGTGACCTCGCATGGATTC 60.135 52.381 0.00 0.00 40.85 2.52
20 21 0.904649 TGAGTGACCTCGCATGGATT 59.095 50.000 0.00 0.00 40.85 3.01
21 22 0.904649 TTGAGTGACCTCGCATGGAT 59.095 50.000 0.00 0.00 40.85 3.41
22 23 0.904649 ATTGAGTGACCTCGCATGGA 59.095 50.000 0.00 0.00 40.85 3.41
23 24 1.742761 AATTGAGTGACCTCGCATGG 58.257 50.000 0.00 0.00 40.85 3.66
24 25 5.490139 AAATAATTGAGTGACCTCGCATG 57.510 39.130 0.00 0.00 40.85 4.06
25 26 6.515272 AAAAATAATTGAGTGACCTCGCAT 57.485 33.333 0.00 0.00 40.85 4.73
26 27 5.957842 AAAAATAATTGAGTGACCTCGCA 57.042 34.783 0.00 0.00 40.85 5.10
54 55 5.915758 CAGGACTAACAGTAGCGATATGTTC 59.084 44.000 10.37 0.76 38.14 3.18
55 56 5.221263 CCAGGACTAACAGTAGCGATATGTT 60.221 44.000 11.36 11.36 40.17 2.71
56 57 4.278669 CCAGGACTAACAGTAGCGATATGT 59.721 45.833 0.00 0.00 0.00 2.29
57 58 4.799678 CCAGGACTAACAGTAGCGATATG 58.200 47.826 0.00 0.00 0.00 1.78
58 59 3.256136 GCCAGGACTAACAGTAGCGATAT 59.744 47.826 0.00 0.00 0.00 1.63
59 60 2.621998 GCCAGGACTAACAGTAGCGATA 59.378 50.000 0.00 0.00 0.00 2.92
60 61 1.409427 GCCAGGACTAACAGTAGCGAT 59.591 52.381 0.00 0.00 0.00 4.58
61 62 0.815734 GCCAGGACTAACAGTAGCGA 59.184 55.000 0.00 0.00 0.00 4.93
62 63 0.179108 GGCCAGGACTAACAGTAGCG 60.179 60.000 0.00 0.00 0.00 4.26
63 64 0.902531 TGGCCAGGACTAACAGTAGC 59.097 55.000 0.00 0.00 0.00 3.58
64 65 3.034635 AGATGGCCAGGACTAACAGTAG 58.965 50.000 13.05 0.00 0.00 2.57
65 66 3.031736 GAGATGGCCAGGACTAACAGTA 58.968 50.000 13.05 0.00 0.00 2.74
66 67 1.834263 GAGATGGCCAGGACTAACAGT 59.166 52.381 13.05 0.00 0.00 3.55
67 68 1.833630 TGAGATGGCCAGGACTAACAG 59.166 52.381 13.05 0.00 0.00 3.16
68 69 1.833630 CTGAGATGGCCAGGACTAACA 59.166 52.381 13.05 5.26 0.00 2.41
69 70 2.611225 CTGAGATGGCCAGGACTAAC 57.389 55.000 13.05 0.70 0.00 2.34
113 114 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
114 115 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
115 116 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
120 121 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
121 122 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
165 166 0.600057 CTCAAAACTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
166 167 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
167 168 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
168 169 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
169 170 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
171 172 0.813821 GATGGGCTCAAAACTCAGGC 59.186 55.000 0.00 0.00 34.44 4.85
172 173 2.089980 CTGATGGGCTCAAAACTCAGG 58.910 52.381 6.98 0.00 32.14 3.86
173 174 1.471684 GCTGATGGGCTCAAAACTCAG 59.528 52.381 10.08 10.08 32.14 3.35
174 175 1.202915 TGCTGATGGGCTCAAAACTCA 60.203 47.619 0.00 0.00 32.14 3.41
175 176 1.471684 CTGCTGATGGGCTCAAAACTC 59.528 52.381 0.00 0.00 32.14 3.01
176 177 1.542492 CTGCTGATGGGCTCAAAACT 58.458 50.000 0.00 0.00 32.14 2.66
177 178 0.529378 CCTGCTGATGGGCTCAAAAC 59.471 55.000 0.00 0.00 32.14 2.43
178 179 0.612732 CCCTGCTGATGGGCTCAAAA 60.613 55.000 0.00 0.00 37.99 2.44
179 180 1.000521 CCCTGCTGATGGGCTCAAA 60.001 57.895 0.00 0.00 37.99 2.69
180 181 2.679092 CCCTGCTGATGGGCTCAA 59.321 61.111 0.00 0.00 37.99 3.02
186 187 3.414193 TCCAGGCCCTGCTGATGG 61.414 66.667 4.81 0.00 0.00 3.51
187 188 2.124403 GTCCAGGCCCTGCTGATG 60.124 66.667 4.81 0.00 0.00 3.07
188 189 2.611800 TGTCCAGGCCCTGCTGAT 60.612 61.111 4.81 0.00 0.00 2.90
189 190 3.324930 CTGTCCAGGCCCTGCTGA 61.325 66.667 4.81 0.00 0.00 4.26
190 191 4.421515 CCTGTCCAGGCCCTGCTG 62.422 72.222 4.81 0.00 42.44 4.41
199 200 1.975407 CAAGCCCAAGCCTGTCCAG 60.975 63.158 0.00 0.00 41.25 3.86
200 201 2.115910 CAAGCCCAAGCCTGTCCA 59.884 61.111 0.00 0.00 41.25 4.02
201 202 2.677875 CCAAGCCCAAGCCTGTCC 60.678 66.667 0.00 0.00 41.25 4.02
202 203 3.376918 GCCAAGCCCAAGCCTGTC 61.377 66.667 0.00 0.00 41.25 3.51
203 204 2.153898 TATGCCAAGCCCAAGCCTGT 62.154 55.000 0.00 0.00 41.25 4.00
204 205 0.757935 ATATGCCAAGCCCAAGCCTG 60.758 55.000 0.00 0.00 41.25 4.85
205 206 0.031817 AATATGCCAAGCCCAAGCCT 60.032 50.000 0.00 0.00 41.25 4.58
206 207 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
207 208 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
208 209 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
209 210 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
210 211 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
211 212 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
212 213 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
213 214 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
214 215 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
215 216 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
216 217 5.601729 TCATCCTTAAAATGCCAATATGCCA 59.398 36.000 0.00 0.00 0.00 4.92
217 218 6.100404 TCATCCTTAAAATGCCAATATGCC 57.900 37.500 0.00 0.00 0.00 4.40
218 219 6.161381 CCTCATCCTTAAAATGCCAATATGC 58.839 40.000 0.00 0.00 0.00 3.14
219 220 6.161381 GCCTCATCCTTAAAATGCCAATATG 58.839 40.000 0.00 0.00 0.00 1.78
220 221 5.246883 GGCCTCATCCTTAAAATGCCAATAT 59.753 40.000 0.00 0.00 37.58 1.28
221 222 4.588528 GGCCTCATCCTTAAAATGCCAATA 59.411 41.667 0.00 0.00 37.58 1.90
222 223 3.389002 GGCCTCATCCTTAAAATGCCAAT 59.611 43.478 0.00 0.00 37.58 3.16
223 224 2.765699 GGCCTCATCCTTAAAATGCCAA 59.234 45.455 0.00 0.00 37.58 4.52
224 225 2.387757 GGCCTCATCCTTAAAATGCCA 58.612 47.619 0.00 0.00 37.58 4.92
225 226 1.688735 GGGCCTCATCCTTAAAATGCC 59.311 52.381 0.84 0.00 36.92 4.40
226 227 1.338020 CGGGCCTCATCCTTAAAATGC 59.662 52.381 0.84 0.00 0.00 3.56
227 228 1.956477 CCGGGCCTCATCCTTAAAATG 59.044 52.381 0.84 0.00 0.00 2.32
228 229 1.133482 CCCGGGCCTCATCCTTAAAAT 60.133 52.381 8.08 0.00 0.00 1.82
229 230 0.257616 CCCGGGCCTCATCCTTAAAA 59.742 55.000 8.08 0.00 0.00 1.52
230 231 1.919771 CCCGGGCCTCATCCTTAAA 59.080 57.895 8.08 0.00 0.00 1.52
231 232 2.752807 GCCCGGGCCTCATCCTTAA 61.753 63.158 36.64 0.00 34.56 1.85
232 233 3.168528 GCCCGGGCCTCATCCTTA 61.169 66.667 36.64 0.00 34.56 2.69
280 281 0.600057 CTCAAAACTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
281 282 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
282 283 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
283 284 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
284 285 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
286 287 0.813821 GATGGGCTCAAAACTCAGGC 59.186 55.000 0.00 0.00 34.44 4.85
287 288 2.089980 CTGATGGGCTCAAAACTCAGG 58.910 52.381 6.98 0.00 32.14 3.86
288 289 1.471684 GCTGATGGGCTCAAAACTCAG 59.528 52.381 10.08 10.08 32.14 3.35
289 290 1.202915 TGCTGATGGGCTCAAAACTCA 60.203 47.619 0.00 0.00 32.14 3.41
290 291 1.471684 CTGCTGATGGGCTCAAAACTC 59.528 52.381 0.00 0.00 32.14 3.01
291 292 1.542492 CTGCTGATGGGCTCAAAACT 58.458 50.000 0.00 0.00 32.14 2.66
292 293 0.529378 CCTGCTGATGGGCTCAAAAC 59.471 55.000 0.00 0.00 32.14 2.43
293 294 0.612732 CCCTGCTGATGGGCTCAAAA 60.613 55.000 0.00 0.00 37.99 2.44
294 295 1.000521 CCCTGCTGATGGGCTCAAA 60.001 57.895 0.00 0.00 37.99 2.69
295 296 2.679092 CCCTGCTGATGGGCTCAA 59.321 61.111 0.00 0.00 37.99 3.02
301 302 3.414193 TCCAGGCCCTGCTGATGG 61.414 66.667 4.81 0.00 0.00 3.51
302 303 2.124403 GTCCAGGCCCTGCTGATG 60.124 66.667 4.81 0.00 0.00 3.07
303 304 2.611800 TGTCCAGGCCCTGCTGAT 60.612 61.111 4.81 0.00 0.00 2.90
304 305 3.324930 CTGTCCAGGCCCTGCTGA 61.325 66.667 4.81 0.00 0.00 4.26
305 306 4.421515 CCTGTCCAGGCCCTGCTG 62.422 72.222 4.81 0.00 42.44 4.41
314 315 1.975407 CAAGCCCAAGCCTGTCCAG 60.975 63.158 0.00 0.00 41.25 3.86
315 316 2.115910 CAAGCCCAAGCCTGTCCA 59.884 61.111 0.00 0.00 41.25 4.02
316 317 1.973812 GTCAAGCCCAAGCCTGTCC 60.974 63.158 0.00 0.00 41.25 4.02
317 318 0.610232 ATGTCAAGCCCAAGCCTGTC 60.610 55.000 0.00 0.00 41.25 3.51
318 319 0.698238 TATGTCAAGCCCAAGCCTGT 59.302 50.000 0.00 0.00 41.25 4.00
319 320 2.062971 ATATGTCAAGCCCAAGCCTG 57.937 50.000 0.00 0.00 41.25 4.85
320 321 2.381911 CAATATGTCAAGCCCAAGCCT 58.618 47.619 0.00 0.00 41.25 4.58
321 322 1.410153 CCAATATGTCAAGCCCAAGCC 59.590 52.381 0.00 0.00 41.25 4.35
322 323 1.202452 GCCAATATGTCAAGCCCAAGC 60.202 52.381 0.00 0.00 40.32 4.01
323 324 2.101783 TGCCAATATGTCAAGCCCAAG 58.898 47.619 0.00 0.00 0.00 3.61
324 325 2.228545 TGCCAATATGTCAAGCCCAA 57.771 45.000 0.00 0.00 0.00 4.12
325 326 2.457813 ATGCCAATATGTCAAGCCCA 57.542 45.000 0.00 0.00 0.00 5.36
326 327 3.825143 AAATGCCAATATGTCAAGCCC 57.175 42.857 0.00 0.00 0.00 5.19
327 328 5.754890 CCTTAAAATGCCAATATGTCAAGCC 59.245 40.000 0.00 0.00 0.00 4.35
328 329 6.572519 TCCTTAAAATGCCAATATGTCAAGC 58.427 36.000 0.00 0.00 0.00 4.01
329 330 8.415553 TCATCCTTAAAATGCCAATATGTCAAG 58.584 33.333 0.00 0.00 0.00 3.02
330 331 8.303780 TCATCCTTAAAATGCCAATATGTCAA 57.696 30.769 0.00 0.00 0.00 3.18
331 332 7.014518 CCTCATCCTTAAAATGCCAATATGTCA 59.985 37.037 0.00 0.00 0.00 3.58
332 333 7.373493 CCTCATCCTTAAAATGCCAATATGTC 58.627 38.462 0.00 0.00 0.00 3.06
333 334 6.239402 GCCTCATCCTTAAAATGCCAATATGT 60.239 38.462 0.00 0.00 0.00 2.29
334 335 6.161381 GCCTCATCCTTAAAATGCCAATATG 58.839 40.000 0.00 0.00 0.00 1.78
335 336 5.246883 GGCCTCATCCTTAAAATGCCAATAT 59.753 40.000 0.00 0.00 37.58 1.28
336 337 4.588528 GGCCTCATCCTTAAAATGCCAATA 59.411 41.667 0.00 0.00 37.58 1.90
337 338 3.389002 GGCCTCATCCTTAAAATGCCAAT 59.611 43.478 0.00 0.00 37.58 3.16
338 339 2.765699 GGCCTCATCCTTAAAATGCCAA 59.234 45.455 0.00 0.00 37.58 4.52
339 340 2.387757 GGCCTCATCCTTAAAATGCCA 58.612 47.619 0.00 0.00 37.58 4.92
340 341 1.688735 GGGCCTCATCCTTAAAATGCC 59.311 52.381 0.84 0.00 36.92 4.40
341 342 1.338020 CGGGCCTCATCCTTAAAATGC 59.662 52.381 0.84 0.00 0.00 3.56
342 343 1.956477 CCGGGCCTCATCCTTAAAATG 59.044 52.381 0.84 0.00 0.00 2.32
343 344 1.754201 GCCGGGCCTCATCCTTAAAAT 60.754 52.381 8.12 0.00 0.00 1.82
344 345 0.395173 GCCGGGCCTCATCCTTAAAA 60.395 55.000 8.12 0.00 0.00 1.52
345 346 1.226262 GCCGGGCCTCATCCTTAAA 59.774 57.895 8.12 0.00 0.00 1.52
346 347 2.752807 GGCCGGGCCTCATCCTTAA 61.753 63.158 30.86 0.00 46.69 1.85
347 348 3.168528 GGCCGGGCCTCATCCTTA 61.169 66.667 30.86 0.00 46.69 2.69
371 372 0.332972 AGCCCTGAAAAGCCCTTAGG 59.667 55.000 0.00 0.00 0.00 2.69
372 373 2.222227 AAGCCCTGAAAAGCCCTTAG 57.778 50.000 0.00 0.00 0.00 2.18
373 374 2.694616 AAAGCCCTGAAAAGCCCTTA 57.305 45.000 0.00 0.00 0.00 2.69
374 375 1.806496 AAAAGCCCTGAAAAGCCCTT 58.194 45.000 0.00 0.00 0.00 3.95
375 376 1.806496 AAAAAGCCCTGAAAAGCCCT 58.194 45.000 0.00 0.00 0.00 5.19
376 377 2.632996 AGTAAAAAGCCCTGAAAAGCCC 59.367 45.455 0.00 0.00 0.00 5.19
377 378 4.765339 TCTAGTAAAAAGCCCTGAAAAGCC 59.235 41.667 0.00 0.00 0.00 4.35
378 379 5.959618 TCTAGTAAAAAGCCCTGAAAAGC 57.040 39.130 0.00 0.00 0.00 3.51
379 380 6.127619 CCCATCTAGTAAAAAGCCCTGAAAAG 60.128 42.308 0.00 0.00 0.00 2.27
380 381 5.714806 CCCATCTAGTAAAAAGCCCTGAAAA 59.285 40.000 0.00 0.00 0.00 2.29
381 382 5.261216 CCCATCTAGTAAAAAGCCCTGAAA 58.739 41.667 0.00 0.00 0.00 2.69
382 383 4.855340 CCCATCTAGTAAAAAGCCCTGAA 58.145 43.478 0.00 0.00 0.00 3.02
383 384 3.371595 GCCCATCTAGTAAAAAGCCCTGA 60.372 47.826 0.00 0.00 0.00 3.86
384 385 2.952310 GCCCATCTAGTAAAAAGCCCTG 59.048 50.000 0.00 0.00 0.00 4.45
385 386 2.091830 GGCCCATCTAGTAAAAAGCCCT 60.092 50.000 0.00 0.00 32.93 5.19
386 387 2.307768 GGCCCATCTAGTAAAAAGCCC 58.692 52.381 0.00 0.00 32.93 5.19
387 388 1.947456 CGGCCCATCTAGTAAAAAGCC 59.053 52.381 0.00 0.00 35.78 4.35
388 389 1.947456 CCGGCCCATCTAGTAAAAAGC 59.053 52.381 0.00 0.00 0.00 3.51
389 390 2.572290 CCCGGCCCATCTAGTAAAAAG 58.428 52.381 0.00 0.00 0.00 2.27
390 391 1.409101 GCCCGGCCCATCTAGTAAAAA 60.409 52.381 0.00 0.00 0.00 1.94
391 392 0.181824 GCCCGGCCCATCTAGTAAAA 59.818 55.000 0.00 0.00 0.00 1.52
392 393 0.693092 AGCCCGGCCCATCTAGTAAA 60.693 55.000 5.55 0.00 0.00 2.01
393 394 0.693092 AAGCCCGGCCCATCTAGTAA 60.693 55.000 5.55 0.00 0.00 2.24
394 395 1.074775 AAGCCCGGCCCATCTAGTA 60.075 57.895 5.55 0.00 0.00 1.82
395 396 2.366972 AAGCCCGGCCCATCTAGT 60.367 61.111 5.55 0.00 0.00 2.57
396 397 2.111878 CAAGCCCGGCCCATCTAG 59.888 66.667 5.55 0.00 0.00 2.43
397 398 3.488569 CCAAGCCCGGCCCATCTA 61.489 66.667 5.55 0.00 0.00 1.98
405 406 2.158561 CTTTTGAAGCCCAAGCCCGG 62.159 60.000 0.00 0.00 41.25 5.73
406 407 1.290009 CTTTTGAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
407 408 1.546029 CTACTTTTGAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
408 409 1.546029 CCTACTTTTGAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
409 410 2.229062 GACCTACTTTTGAAGCCCAAGC 59.771 50.000 0.00 0.00 35.94 4.01
410 411 2.820197 GGACCTACTTTTGAAGCCCAAG 59.180 50.000 0.00 0.00 35.94 3.61
411 412 2.812613 CGGACCTACTTTTGAAGCCCAA 60.813 50.000 0.00 0.00 0.00 4.12
412 413 1.271163 CGGACCTACTTTTGAAGCCCA 60.271 52.381 0.00 0.00 0.00 5.36
413 414 1.002773 TCGGACCTACTTTTGAAGCCC 59.997 52.381 0.00 0.00 0.00 5.19
414 415 2.467566 TCGGACCTACTTTTGAAGCC 57.532 50.000 0.00 0.00 0.00 4.35
415 416 3.596214 TCATCGGACCTACTTTTGAAGC 58.404 45.455 0.00 0.00 0.00 3.86
416 417 5.986135 CCTATCATCGGACCTACTTTTGAAG 59.014 44.000 0.00 0.00 0.00 3.02
417 418 5.163343 CCCTATCATCGGACCTACTTTTGAA 60.163 44.000 0.00 0.00 0.00 2.69
418 419 4.344102 CCCTATCATCGGACCTACTTTTGA 59.656 45.833 0.00 0.00 0.00 2.69
419 420 4.632153 CCCTATCATCGGACCTACTTTTG 58.368 47.826 0.00 0.00 0.00 2.44
420 421 3.071167 GCCCTATCATCGGACCTACTTTT 59.929 47.826 0.00 0.00 0.00 2.27
421 422 2.633481 GCCCTATCATCGGACCTACTTT 59.367 50.000 0.00 0.00 0.00 2.66
422 423 2.249139 GCCCTATCATCGGACCTACTT 58.751 52.381 0.00 0.00 0.00 2.24
423 424 1.550409 GGCCCTATCATCGGACCTACT 60.550 57.143 0.00 0.00 0.00 2.57
424 425 0.896226 GGCCCTATCATCGGACCTAC 59.104 60.000 0.00 0.00 0.00 3.18
425 426 0.784495 AGGCCCTATCATCGGACCTA 59.216 55.000 0.00 0.00 0.00 3.08
426 427 0.833834 CAGGCCCTATCATCGGACCT 60.834 60.000 0.00 0.00 0.00 3.85
427 428 1.674057 CAGGCCCTATCATCGGACC 59.326 63.158 0.00 0.00 0.00 4.46
428 429 1.674057 CCAGGCCCTATCATCGGAC 59.326 63.158 0.00 0.00 0.00 4.79
429 430 1.536418 CCCAGGCCCTATCATCGGA 60.536 63.158 0.00 0.00 0.00 4.55
430 431 1.536418 TCCCAGGCCCTATCATCGG 60.536 63.158 0.00 0.00 0.00 4.18
431 432 1.548357 CCTCCCAGGCCCTATCATCG 61.548 65.000 0.00 0.00 0.00 3.84
432 433 1.204113 CCCTCCCAGGCCCTATCATC 61.204 65.000 0.00 0.00 32.73 2.92
433 434 1.151721 CCCTCCCAGGCCCTATCAT 60.152 63.158 0.00 0.00 32.73 2.45
434 435 2.290393 CCCTCCCAGGCCCTATCA 59.710 66.667 0.00 0.00 32.73 2.15
454 455 1.228552 GGCAGAAAACTGAGGCCCA 60.229 57.895 0.00 0.00 38.70 5.36
455 456 2.335712 CGGCAGAAAACTGAGGCCC 61.336 63.158 0.00 0.00 41.58 5.80
456 457 1.600916 ACGGCAGAAAACTGAGGCC 60.601 57.895 0.00 0.00 41.20 5.19
457 458 1.576421 CACGGCAGAAAACTGAGGC 59.424 57.895 0.00 0.00 0.00 4.70
458 459 1.237285 CCCACGGCAGAAAACTGAGG 61.237 60.000 0.00 0.00 0.00 3.86
459 460 2.247790 CCCACGGCAGAAAACTGAG 58.752 57.895 0.00 0.00 0.00 3.35
460 461 4.473643 CCCACGGCAGAAAACTGA 57.526 55.556 0.00 0.00 0.00 3.41
471 472 2.650778 GCCTGAAAAAGCCCACGG 59.349 61.111 0.00 0.00 0.00 4.94
472 473 2.650778 GGCCTGAAAAAGCCCACG 59.349 61.111 0.00 0.00 43.76 4.94
477 478 4.069232 GGCCGGGCCTGAAAAAGC 62.069 66.667 30.86 7.24 46.69 3.51
498 499 2.171448 GGTAGCTATATCTGGCCATGGG 59.829 54.545 15.13 0.00 0.00 4.00
499 500 2.159043 CGGTAGCTATATCTGGCCATGG 60.159 54.545 5.51 7.63 0.00 3.66
500 501 2.497675 ACGGTAGCTATATCTGGCCATG 59.502 50.000 5.51 0.00 0.00 3.66
501 502 2.821437 ACGGTAGCTATATCTGGCCAT 58.179 47.619 5.51 0.00 0.00 4.40
502 503 2.304221 ACGGTAGCTATATCTGGCCA 57.696 50.000 4.71 4.71 0.00 5.36
503 504 4.159879 ACAATACGGTAGCTATATCTGGCC 59.840 45.833 0.00 0.00 0.00 5.36
504 505 5.103000 CACAATACGGTAGCTATATCTGGC 58.897 45.833 0.00 0.00 0.00 4.85
505 506 5.103000 GCACAATACGGTAGCTATATCTGG 58.897 45.833 0.00 0.00 0.00 3.86
506 507 4.793731 CGCACAATACGGTAGCTATATCTG 59.206 45.833 0.00 0.00 0.00 2.90
507 508 4.698780 TCGCACAATACGGTAGCTATATCT 59.301 41.667 0.00 0.00 0.00 1.98
508 509 4.978186 TCGCACAATACGGTAGCTATATC 58.022 43.478 0.00 0.00 0.00 1.63
509 510 4.674623 GCTCGCACAATACGGTAGCTATAT 60.675 45.833 0.00 0.00 30.33 0.86
510 511 3.365666 GCTCGCACAATACGGTAGCTATA 60.366 47.826 0.00 0.00 30.33 1.31
511 512 2.607282 GCTCGCACAATACGGTAGCTAT 60.607 50.000 0.00 0.00 30.33 2.97
512 513 1.268896 GCTCGCACAATACGGTAGCTA 60.269 52.381 0.00 0.00 30.33 3.32
513 514 0.527817 GCTCGCACAATACGGTAGCT 60.528 55.000 0.00 0.00 30.33 3.32
514 515 1.808234 CGCTCGCACAATACGGTAGC 61.808 60.000 0.00 0.00 0.00 3.58
515 516 1.808234 GCGCTCGCACAATACGGTAG 61.808 60.000 9.59 0.00 41.49 3.18
516 517 1.874915 GCGCTCGCACAATACGGTA 60.875 57.895 9.59 0.00 41.49 4.02
517 518 2.274232 TAGCGCTCGCACAATACGGT 62.274 55.000 16.34 0.00 44.88 4.83
518 519 1.587876 TAGCGCTCGCACAATACGG 60.588 57.895 16.34 0.00 44.88 4.02
519 520 0.866061 AGTAGCGCTCGCACAATACG 60.866 55.000 16.34 0.00 44.88 3.06
520 521 0.572590 CAGTAGCGCTCGCACAATAC 59.427 55.000 16.34 3.29 44.88 1.89
521 522 1.145759 GCAGTAGCGCTCGCACAATA 61.146 55.000 16.34 0.00 44.88 1.90
522 523 2.456119 GCAGTAGCGCTCGCACAAT 61.456 57.895 16.34 0.00 44.88 2.71
523 524 3.112075 GCAGTAGCGCTCGCACAA 61.112 61.111 16.34 0.00 44.88 3.33
533 534 2.804828 AAGAAGGTGGCCGCAGTAGC 62.805 60.000 19.98 0.00 37.42 3.58
534 535 1.021390 CAAGAAGGTGGCCGCAGTAG 61.021 60.000 19.98 0.00 0.00 2.57
535 536 1.003839 CAAGAAGGTGGCCGCAGTA 60.004 57.895 19.98 0.00 0.00 2.74
536 537 2.281761 CAAGAAGGTGGCCGCAGT 60.282 61.111 19.98 4.36 0.00 4.40
537 538 3.058160 CCAAGAAGGTGGCCGCAG 61.058 66.667 19.98 0.00 0.00 5.18
538 539 4.659172 CCCAAGAAGGTGGCCGCA 62.659 66.667 19.98 0.00 37.34 5.69
561 562 0.467384 CTCTGCATACCCCTGACAGG 59.533 60.000 15.15 15.15 34.30 4.00
562 563 0.179062 GCTCTGCATACCCCTGACAG 60.179 60.000 0.00 0.00 0.00 3.51
563 564 1.907739 GCTCTGCATACCCCTGACA 59.092 57.895 0.00 0.00 0.00 3.58
564 565 1.227380 CGCTCTGCATACCCCTGAC 60.227 63.158 0.00 0.00 0.00 3.51
565 566 0.396556 TACGCTCTGCATACCCCTGA 60.397 55.000 0.00 0.00 0.00 3.86
566 567 0.681733 ATACGCTCTGCATACCCCTG 59.318 55.000 0.00 0.00 0.00 4.45
567 568 1.893801 GTATACGCTCTGCATACCCCT 59.106 52.381 0.00 0.00 0.00 4.79
568 569 1.616865 TGTATACGCTCTGCATACCCC 59.383 52.381 0.00 0.00 0.00 4.95
569 570 3.243771 ACTTGTATACGCTCTGCATACCC 60.244 47.826 0.00 0.00 0.00 3.69
570 571 3.978687 ACTTGTATACGCTCTGCATACC 58.021 45.455 0.00 0.00 0.00 2.73
571 572 5.516996 TGTACTTGTATACGCTCTGCATAC 58.483 41.667 0.00 0.00 0.00 2.39
572 573 5.529800 TCTGTACTTGTATACGCTCTGCATA 59.470 40.000 0.00 0.00 0.00 3.14
573 574 4.338400 TCTGTACTTGTATACGCTCTGCAT 59.662 41.667 0.00 0.00 0.00 3.96
574 575 3.692593 TCTGTACTTGTATACGCTCTGCA 59.307 43.478 0.00 0.00 0.00 4.41
575 576 4.283678 CTCTGTACTTGTATACGCTCTGC 58.716 47.826 0.00 0.00 0.00 4.26
576 577 4.283678 GCTCTGTACTTGTATACGCTCTG 58.716 47.826 0.00 0.00 0.00 3.35
577 578 3.002451 CGCTCTGTACTTGTATACGCTCT 59.998 47.826 0.00 0.00 0.00 4.09
578 579 3.289911 CGCTCTGTACTTGTATACGCTC 58.710 50.000 0.00 0.00 0.00 5.03
579 580 2.033049 CCGCTCTGTACTTGTATACGCT 59.967 50.000 0.00 0.00 0.00 5.07
580 581 2.382519 CCGCTCTGTACTTGTATACGC 58.617 52.381 0.00 0.00 0.00 4.42
581 582 2.357009 ACCCGCTCTGTACTTGTATACG 59.643 50.000 0.00 0.00 0.00 3.06
582 583 5.702349 ATACCCGCTCTGTACTTGTATAC 57.298 43.478 0.00 0.00 0.00 1.47
583 584 5.242393 GGAATACCCGCTCTGTACTTGTATA 59.758 44.000 0.00 0.00 0.00 1.47
584 585 4.038883 GGAATACCCGCTCTGTACTTGTAT 59.961 45.833 0.00 0.00 0.00 2.29
585 586 3.382546 GGAATACCCGCTCTGTACTTGTA 59.617 47.826 0.00 0.00 0.00 2.41
586 587 2.167900 GGAATACCCGCTCTGTACTTGT 59.832 50.000 0.00 0.00 0.00 3.16
587 588 2.167693 TGGAATACCCGCTCTGTACTTG 59.832 50.000 0.00 0.00 37.93 3.16
588 589 2.167900 GTGGAATACCCGCTCTGTACTT 59.832 50.000 0.00 0.00 42.19 2.24
589 590 1.755380 GTGGAATACCCGCTCTGTACT 59.245 52.381 0.00 0.00 42.19 2.73
590 591 1.535437 CGTGGAATACCCGCTCTGTAC 60.535 57.143 0.00 0.00 43.28 2.90
591 592 0.742505 CGTGGAATACCCGCTCTGTA 59.257 55.000 0.00 0.00 43.28 2.74
592 593 1.255667 ACGTGGAATACCCGCTCTGT 61.256 55.000 0.00 0.00 43.28 3.41
593 594 0.527817 GACGTGGAATACCCGCTCTG 60.528 60.000 0.00 0.00 43.28 3.35
594 595 0.968901 TGACGTGGAATACCCGCTCT 60.969 55.000 0.00 0.00 43.28 4.09
595 596 0.108520 TTGACGTGGAATACCCGCTC 60.109 55.000 0.00 0.00 43.28 5.03
596 597 0.322322 TTTGACGTGGAATACCCGCT 59.678 50.000 0.00 0.00 43.28 5.52
597 598 1.129811 CTTTTGACGTGGAATACCCGC 59.870 52.381 0.00 0.00 42.03 6.13
598 599 2.414138 GACTTTTGACGTGGAATACCCG 59.586 50.000 0.00 0.00 37.93 5.28
599 600 2.745821 GGACTTTTGACGTGGAATACCC 59.254 50.000 0.00 0.00 34.81 3.69
600 601 3.404899 TGGACTTTTGACGTGGAATACC 58.595 45.455 0.00 0.00 0.00 2.73
601 602 6.920569 ATATGGACTTTTGACGTGGAATAC 57.079 37.500 0.00 0.00 0.00 1.89
602 603 9.621629 AATAATATGGACTTTTGACGTGGAATA 57.378 29.630 0.00 0.00 0.00 1.75
603 604 8.405531 CAATAATATGGACTTTTGACGTGGAAT 58.594 33.333 0.00 0.00 0.00 3.01
604 605 7.608376 TCAATAATATGGACTTTTGACGTGGAA 59.392 33.333 0.00 0.00 0.00 3.53
605 606 7.106890 TCAATAATATGGACTTTTGACGTGGA 58.893 34.615 0.00 0.00 0.00 4.02
606 607 7.315247 TCAATAATATGGACTTTTGACGTGG 57.685 36.000 0.00 0.00 0.00 4.94
607 608 6.907212 GCTCAATAATATGGACTTTTGACGTG 59.093 38.462 0.00 0.00 0.00 4.49
608 609 6.597672 TGCTCAATAATATGGACTTTTGACGT 59.402 34.615 0.00 0.00 0.00 4.34
609 610 6.907212 GTGCTCAATAATATGGACTTTTGACG 59.093 38.462 0.00 0.00 0.00 4.35
610 611 7.698130 GTGTGCTCAATAATATGGACTTTTGAC 59.302 37.037 0.00 0.00 0.00 3.18
611 612 7.148086 GGTGTGCTCAATAATATGGACTTTTGA 60.148 37.037 0.00 0.00 0.00 2.69
612 613 6.974622 GGTGTGCTCAATAATATGGACTTTTG 59.025 38.462 0.00 0.00 0.00 2.44
613 614 6.663093 TGGTGTGCTCAATAATATGGACTTTT 59.337 34.615 0.00 0.00 0.00 2.27
614 615 6.095440 GTGGTGTGCTCAATAATATGGACTTT 59.905 38.462 0.00 0.00 0.00 2.66
615 616 5.590259 GTGGTGTGCTCAATAATATGGACTT 59.410 40.000 0.00 0.00 0.00 3.01
616 617 5.126067 GTGGTGTGCTCAATAATATGGACT 58.874 41.667 0.00 0.00 0.00 3.85
617 618 4.024893 CGTGGTGTGCTCAATAATATGGAC 60.025 45.833 0.00 0.00 0.00 4.02
618 619 4.126437 CGTGGTGTGCTCAATAATATGGA 58.874 43.478 0.00 0.00 0.00 3.41
619 620 3.876914 ACGTGGTGTGCTCAATAATATGG 59.123 43.478 0.00 0.00 0.00 2.74
620 621 5.265477 CAACGTGGTGTGCTCAATAATATG 58.735 41.667 0.00 0.00 0.00 1.78
621 622 4.335315 CCAACGTGGTGTGCTCAATAATAT 59.665 41.667 0.00 0.00 31.35 1.28
622 623 3.687212 CCAACGTGGTGTGCTCAATAATA 59.313 43.478 0.00 0.00 31.35 0.98
623 624 2.487762 CCAACGTGGTGTGCTCAATAAT 59.512 45.455 0.00 0.00 31.35 1.28
624 625 1.876799 CCAACGTGGTGTGCTCAATAA 59.123 47.619 0.00 0.00 31.35 1.40
625 626 1.070914 TCCAACGTGGTGTGCTCAATA 59.929 47.619 0.00 0.00 39.03 1.90
626 627 0.179032 TCCAACGTGGTGTGCTCAAT 60.179 50.000 0.00 0.00 39.03 2.57
716 717 3.955471 AGCTGCCAAAGAAAGCTACATA 58.045 40.909 0.00 0.00 45.26 2.29
947 1012 0.031721 GGCGCACTTATAGCTACGGT 59.968 55.000 10.83 0.00 0.00 4.83
991 1085 2.016393 GACACCGCCATCTCGATCCA 62.016 60.000 0.00 0.00 0.00 3.41
1182 1330 6.373005 TCTCAGAGGAGAGAGTAGGATATG 57.627 45.833 0.00 0.00 45.12 1.78
1206 1405 7.061905 CACATCAGAAATCGTTCCGTATATACC 59.938 40.741 7.30 0.00 33.92 2.73
1298 1506 1.966901 ATGGCGACGGGTATCTGCAA 61.967 55.000 0.00 0.00 0.00 4.08
1403 1614 3.441163 TGCACGAGAAATGACGGTATAC 58.559 45.455 0.00 0.00 0.00 1.47
1404 1615 3.786516 TGCACGAGAAATGACGGTATA 57.213 42.857 0.00 0.00 0.00 1.47
1405 1616 2.665649 TGCACGAGAAATGACGGTAT 57.334 45.000 0.00 0.00 0.00 2.73
1815 4957 5.473162 CCCATGGACGAAAAGAATATGCATA 59.527 40.000 15.22 9.27 0.00 3.14
1947 5089 1.737793 GGAAGGCGTTCGATTTGTCAT 59.262 47.619 12.65 0.00 32.92 3.06
1963 5105 6.215121 TGAACAACATAAATTGCTGTGGAAG 58.785 36.000 2.80 0.00 34.89 3.46
1970 5112 7.092716 GTCATCCTTGAACAACATAAATTGCT 58.907 34.615 0.00 0.00 32.48 3.91
2063 5205 5.104735 ACGAGGATAGGAAATTTCTTCAGCT 60.105 40.000 17.42 8.37 0.00 4.24
2129 5271 3.550820 TGTGTTGTTGTATGCTTGGAGT 58.449 40.909 0.00 0.00 0.00 3.85
2188 5330 7.129539 AAGCAGAGATACTGATCATTGGTGTG 61.130 42.308 0.00 0.00 44.93 3.82
2190 5332 5.366460 AAGCAGAGATACTGATCATTGGTG 58.634 41.667 0.00 0.00 44.93 4.17
2204 5353 4.586884 TGATCAGCAAGAAAAGCAGAGAT 58.413 39.130 0.00 0.00 30.95 2.75
2220 5369 2.096220 ACTGCTGAAGTGCTGATCAG 57.904 50.000 18.84 18.84 44.66 2.90
2295 6623 2.225394 ACCTAGTGGTGACCAGACATCT 60.225 50.000 3.58 0.00 46.51 2.90
2298 6626 3.863120 ACCTAGTGGTGACCAGACA 57.137 52.632 3.58 0.00 46.51 3.41
2315 6643 0.823356 TGTGGCCAAGGCAAAGAGAC 60.823 55.000 7.24 0.00 44.11 3.36
2329 6657 3.004171 TGGATTATGTACAACGTGTGGC 58.996 45.455 0.00 0.00 0.00 5.01
2332 6660 9.772973 ATAATATGTGGATTATGTACAACGTGT 57.227 29.630 0.00 0.00 32.03 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.