Multiple sequence alignment - TraesCS1D01G053800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G053800 chr1D 100.000 3309 0 0 1 3309 34947285 34943977 0.000000e+00 6111.0
1 TraesCS1D01G053800 chr1B 88.968 979 52 32 880 1830 53250637 53249687 0.000000e+00 1158.0
2 TraesCS1D01G053800 chr1B 92.845 573 19 7 2755 3307 53248867 53248297 0.000000e+00 811.0
3 TraesCS1D01G053800 chr1B 95.306 490 19 2 1902 2388 53249682 53249194 0.000000e+00 774.0
4 TraesCS1D01G053800 chr1B 89.879 494 26 19 1 484 53251228 53250749 6.070000e-172 614.0
5 TraesCS1D01G053800 chr1A 92.963 739 27 17 883 1619 33375157 33374442 0.000000e+00 1053.0
6 TraesCS1D01G053800 chr1A 90.437 732 45 14 1680 2388 33374214 33373485 0.000000e+00 941.0
7 TraesCS1D01G053800 chr1A 94.422 502 16 6 2815 3309 33373180 33372684 0.000000e+00 761.0
8 TraesCS1D01G053800 chr1A 88.072 503 30 11 1 480 33375755 33375260 1.330000e-158 569.0
9 TraesCS1D01G053800 chr1A 93.902 246 12 1 2459 2704 416006457 416006215 5.220000e-98 368.0
10 TraesCS1D01G053800 chr1A 94.444 72 3 1 2691 2761 33373343 33373272 3.490000e-20 110.0
11 TraesCS1D01G053800 chr5A 96.341 246 9 0 2459 2704 682649630 682649385 3.980000e-109 405.0
12 TraesCS1D01G053800 chr5A 94.545 55 2 1 701 754 25017762 25017708 2.120000e-12 84.2
13 TraesCS1D01G053800 chr2A 95.935 246 10 0 2459 2704 756403453 756403208 1.850000e-107 399.0
14 TraesCS1D01G053800 chr2A 95.528 246 11 0 2459 2704 596700342 596700097 8.610000e-106 394.0
15 TraesCS1D01G053800 chr7A 95.122 246 12 0 2459 2704 662495168 662495413 4.000000e-104 388.0
16 TraesCS1D01G053800 chr7A 94.715 246 13 0 2459 2704 1029835 1029590 1.860000e-102 383.0
17 TraesCS1D01G053800 chr3A 95.349 86 4 0 2619 2704 567160175 567160090 1.600000e-28 137.0
18 TraesCS1D01G053800 chrUn 94.186 86 5 0 2619 2704 257610633 257610548 7.450000e-27 132.0
19 TraesCS1D01G053800 chrUn 94.186 86 5 0 2619 2704 367251595 367251510 7.450000e-27 132.0
20 TraesCS1D01G053800 chr2B 93.750 64 3 1 709 772 253270027 253269965 9.780000e-16 95.3
21 TraesCS1D01G053800 chr4B 86.364 66 7 2 704 767 559866506 559866571 1.650000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G053800 chr1D 34943977 34947285 3308 True 6111.00 6111 100.0000 1 3309 1 chr1D.!!$R1 3308
1 TraesCS1D01G053800 chr1B 53248297 53251228 2931 True 839.25 1158 91.7495 1 3307 4 chr1B.!!$R1 3306
2 TraesCS1D01G053800 chr1A 33372684 33375755 3071 True 686.80 1053 92.0676 1 3309 5 chr1A.!!$R2 3308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 525 0.031857 TTGCCAATGCTTGTGGAACG 59.968 50.0 5.22 0.0 38.54 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2472 2793 0.103208 GCACTAGTCGATGAGGTGGG 59.897 60.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 159 2.287194 CTCCCCCACCCCTCCATT 60.287 66.667 0.00 0.00 0.00 3.16
274 288 2.507471 GACTCTGTCCTGGGGATGAAAT 59.493 50.000 0.00 0.00 32.73 2.17
276 290 3.334881 ACTCTGTCCTGGGGATGAAATTT 59.665 43.478 0.00 0.00 32.73 1.82
277 291 4.540099 ACTCTGTCCTGGGGATGAAATTTA 59.460 41.667 0.00 0.00 32.73 1.40
278 292 5.116084 TCTGTCCTGGGGATGAAATTTAG 57.884 43.478 0.00 0.00 32.73 1.85
280 294 5.729229 TCTGTCCTGGGGATGAAATTTAGTA 59.271 40.000 0.00 0.00 32.73 1.82
322 336 7.622893 TGTGAATGAACGAATTAATGGATGA 57.377 32.000 0.00 0.00 0.00 2.92
360 374 3.002759 TGCGTGATTCATGACGTTTTTGA 59.997 39.130 10.09 0.00 39.58 2.69
431 459 8.385111 GTTTTAAGCCAAGGTTGTTAAGTTTTC 58.615 33.333 0.00 0.00 0.00 2.29
444 472 7.945033 TGTTAAGTTTTCTGCCAATGATTTC 57.055 32.000 0.00 0.00 0.00 2.17
445 473 6.928492 TGTTAAGTTTTCTGCCAATGATTTCC 59.072 34.615 0.00 0.00 0.00 3.13
446 474 5.813513 AAGTTTTCTGCCAATGATTTCCT 57.186 34.783 0.00 0.00 0.00 3.36
447 475 5.143376 AGTTTTCTGCCAATGATTTCCTG 57.857 39.130 0.00 0.00 0.00 3.86
448 476 4.834496 AGTTTTCTGCCAATGATTTCCTGA 59.166 37.500 0.00 0.00 0.00 3.86
449 477 5.047519 AGTTTTCTGCCAATGATTTCCTGAG 60.048 40.000 0.00 0.00 0.00 3.35
450 478 4.305539 TTCTGCCAATGATTTCCTGAGA 57.694 40.909 0.00 0.00 0.00 3.27
451 479 3.882444 TCTGCCAATGATTTCCTGAGAG 58.118 45.455 0.00 0.00 0.00 3.20
452 480 3.520721 TCTGCCAATGATTTCCTGAGAGA 59.479 43.478 0.00 0.00 0.00 3.10
453 481 3.878103 CTGCCAATGATTTCCTGAGAGAG 59.122 47.826 0.00 0.00 0.00 3.20
454 482 2.617774 GCCAATGATTTCCTGAGAGAGC 59.382 50.000 0.00 0.00 0.00 4.09
455 483 2.871022 CCAATGATTTCCTGAGAGAGCG 59.129 50.000 0.00 0.00 0.00 5.03
456 484 3.529533 CAATGATTTCCTGAGAGAGCGT 58.470 45.455 0.00 0.00 0.00 5.07
457 485 2.949451 TGATTTCCTGAGAGAGCGTC 57.051 50.000 0.00 0.00 0.00 5.19
458 486 2.171003 TGATTTCCTGAGAGAGCGTCA 58.829 47.619 0.00 0.00 0.00 4.35
459 487 2.165234 TGATTTCCTGAGAGAGCGTCAG 59.835 50.000 0.00 0.00 41.08 3.51
460 488 0.244994 TTTCCTGAGAGAGCGTCAGC 59.755 55.000 3.66 0.00 40.22 4.26
472 500 1.859383 GCGTCAGCTTAGATTCTCCC 58.141 55.000 0.00 0.00 41.01 4.30
473 501 1.137086 GCGTCAGCTTAGATTCTCCCA 59.863 52.381 0.00 0.00 41.01 4.37
474 502 2.815478 CGTCAGCTTAGATTCTCCCAC 58.185 52.381 0.00 0.00 0.00 4.61
475 503 2.166459 CGTCAGCTTAGATTCTCCCACA 59.834 50.000 0.00 0.00 0.00 4.17
476 504 3.368427 CGTCAGCTTAGATTCTCCCACAA 60.368 47.826 0.00 0.00 0.00 3.33
477 505 4.681781 CGTCAGCTTAGATTCTCCCACAAT 60.682 45.833 0.00 0.00 0.00 2.71
478 506 5.189180 GTCAGCTTAGATTCTCCCACAATT 58.811 41.667 0.00 0.00 0.00 2.32
479 507 5.649831 GTCAGCTTAGATTCTCCCACAATTT 59.350 40.000 0.00 0.00 0.00 1.82
480 508 5.649395 TCAGCTTAGATTCTCCCACAATTTG 59.351 40.000 0.00 0.00 0.00 2.32
481 509 4.400567 AGCTTAGATTCTCCCACAATTTGC 59.599 41.667 0.00 0.00 0.00 3.68
482 510 4.440663 GCTTAGATTCTCCCACAATTTGCC 60.441 45.833 0.00 0.00 0.00 4.52
483 511 3.173953 AGATTCTCCCACAATTTGCCA 57.826 42.857 0.00 0.00 0.00 4.92
484 512 3.509442 AGATTCTCCCACAATTTGCCAA 58.491 40.909 0.00 0.00 0.00 4.52
485 513 4.098894 AGATTCTCCCACAATTTGCCAAT 58.901 39.130 0.00 0.00 0.00 3.16
486 514 3.681593 TTCTCCCACAATTTGCCAATG 57.318 42.857 0.00 0.00 0.00 2.82
487 515 1.275856 TCTCCCACAATTTGCCAATGC 59.724 47.619 0.00 0.00 38.26 3.56
488 516 1.276989 CTCCCACAATTTGCCAATGCT 59.723 47.619 0.00 0.00 38.71 3.79
489 517 1.698532 TCCCACAATTTGCCAATGCTT 59.301 42.857 0.00 0.00 38.71 3.91
490 518 1.807742 CCCACAATTTGCCAATGCTTG 59.192 47.619 0.00 0.00 38.71 4.01
491 519 2.496111 CCACAATTTGCCAATGCTTGT 58.504 42.857 0.00 0.00 34.74 3.16
492 520 2.224549 CCACAATTTGCCAATGCTTGTG 59.775 45.455 15.55 15.55 44.47 3.33
493 521 2.224549 CACAATTTGCCAATGCTTGTGG 59.775 45.455 15.04 0.13 42.71 4.17
494 522 2.104451 ACAATTTGCCAATGCTTGTGGA 59.896 40.909 5.22 0.00 38.54 4.02
495 523 3.139850 CAATTTGCCAATGCTTGTGGAA 58.860 40.909 5.22 0.00 38.54 3.53
496 524 2.237393 TTTGCCAATGCTTGTGGAAC 57.763 45.000 5.22 0.00 38.54 3.62
497 525 0.031857 TTGCCAATGCTTGTGGAACG 59.968 50.000 5.22 0.00 38.54 3.95
498 526 1.080569 GCCAATGCTTGTGGAACGG 60.081 57.895 5.22 0.00 38.54 4.44
499 527 1.586028 CCAATGCTTGTGGAACGGG 59.414 57.895 0.00 0.00 42.39 5.28
500 528 1.586028 CAATGCTTGTGGAACGGGG 59.414 57.895 0.00 0.00 42.39 5.73
501 529 2.275380 AATGCTTGTGGAACGGGGC 61.275 57.895 0.00 0.00 42.39 5.80
502 530 2.992817 AATGCTTGTGGAACGGGGCA 62.993 55.000 0.00 0.00 42.39 5.36
503 531 3.365265 GCTTGTGGAACGGGGCAG 61.365 66.667 0.00 0.00 42.39 4.85
504 532 2.672996 CTTGTGGAACGGGGCAGG 60.673 66.667 0.00 0.00 42.39 4.85
505 533 3.172106 TTGTGGAACGGGGCAGGA 61.172 61.111 0.00 0.00 42.39 3.86
506 534 2.690653 CTTGTGGAACGGGGCAGGAA 62.691 60.000 0.00 0.00 42.39 3.36
507 535 2.114411 GTGGAACGGGGCAGGAAA 59.886 61.111 0.00 0.00 0.00 3.13
508 536 2.114411 TGGAACGGGGCAGGAAAC 59.886 61.111 0.00 0.00 0.00 2.78
509 537 2.434774 GGAACGGGGCAGGAAACT 59.565 61.111 0.00 0.00 46.44 2.66
510 538 1.228459 GGAACGGGGCAGGAAACTT 60.228 57.895 0.00 0.00 40.21 2.66
511 539 1.524008 GGAACGGGGCAGGAAACTTG 61.524 60.000 0.00 0.00 40.21 3.16
512 540 0.822121 GAACGGGGCAGGAAACTTGT 60.822 55.000 0.00 0.00 40.21 3.16
513 541 0.396556 AACGGGGCAGGAAACTTGTT 60.397 50.000 0.00 0.00 40.21 2.83
514 542 1.106944 ACGGGGCAGGAAACTTGTTG 61.107 55.000 0.00 0.00 40.21 3.33
515 543 0.821711 CGGGGCAGGAAACTTGTTGA 60.822 55.000 0.00 0.00 40.21 3.18
516 544 0.673985 GGGGCAGGAAACTTGTTGAC 59.326 55.000 0.00 0.00 40.21 3.18
517 545 1.692411 GGGCAGGAAACTTGTTGACT 58.308 50.000 0.00 0.00 40.21 3.41
518 546 2.031870 GGGCAGGAAACTTGTTGACTT 58.968 47.619 0.00 0.00 40.21 3.01
519 547 2.430694 GGGCAGGAAACTTGTTGACTTT 59.569 45.455 0.00 0.00 40.21 2.66
520 548 3.118775 GGGCAGGAAACTTGTTGACTTTT 60.119 43.478 0.00 0.00 40.21 2.27
521 549 3.865164 GGCAGGAAACTTGTTGACTTTTG 59.135 43.478 0.00 0.00 40.21 2.44
522 550 3.306973 GCAGGAAACTTGTTGACTTTTGC 59.693 43.478 0.00 0.00 40.21 3.68
523 551 4.747810 CAGGAAACTTGTTGACTTTTGCT 58.252 39.130 0.00 0.00 40.21 3.91
524 552 4.563976 CAGGAAACTTGTTGACTTTTGCTG 59.436 41.667 0.00 0.00 39.84 4.41
525 553 3.306973 GGAAACTTGTTGACTTTTGCTGC 59.693 43.478 0.00 0.00 0.00 5.25
526 554 3.874392 AACTTGTTGACTTTTGCTGCT 57.126 38.095 0.00 0.00 0.00 4.24
527 555 3.155093 ACTTGTTGACTTTTGCTGCTG 57.845 42.857 0.00 0.00 0.00 4.41
528 556 2.754552 ACTTGTTGACTTTTGCTGCTGA 59.245 40.909 0.00 0.00 0.00 4.26
529 557 3.193267 ACTTGTTGACTTTTGCTGCTGAA 59.807 39.130 0.00 0.00 0.00 3.02
530 558 3.425577 TGTTGACTTTTGCTGCTGAAG 57.574 42.857 0.00 7.55 0.00 3.02
531 559 2.754552 TGTTGACTTTTGCTGCTGAAGT 59.245 40.909 16.95 16.95 36.40 3.01
532 560 3.193267 TGTTGACTTTTGCTGCTGAAGTT 59.807 39.130 17.66 6.55 34.02 2.66
533 561 4.176271 GTTGACTTTTGCTGCTGAAGTTT 58.824 39.130 17.66 2.06 34.02 2.66
534 562 4.454728 TGACTTTTGCTGCTGAAGTTTT 57.545 36.364 17.66 1.50 34.02 2.43
535 563 4.819769 TGACTTTTGCTGCTGAAGTTTTT 58.180 34.783 17.66 1.22 34.02 1.94
536 564 4.864247 TGACTTTTGCTGCTGAAGTTTTTC 59.136 37.500 17.66 9.13 34.02 2.29
537 565 5.077134 ACTTTTGCTGCTGAAGTTTTTCT 57.923 34.783 13.02 0.00 34.31 2.52
538 566 5.482006 ACTTTTGCTGCTGAAGTTTTTCTT 58.518 33.333 13.02 0.00 39.32 2.52
539 567 5.934043 ACTTTTGCTGCTGAAGTTTTTCTTT 59.066 32.000 13.02 0.00 36.40 2.52
540 568 6.427853 ACTTTTGCTGCTGAAGTTTTTCTTTT 59.572 30.769 13.02 0.00 36.40 2.27
541 569 6.799926 TTTGCTGCTGAAGTTTTTCTTTTT 57.200 29.167 0.00 0.00 36.40 1.94
542 570 6.407475 TTGCTGCTGAAGTTTTTCTTTTTC 57.593 33.333 0.00 0.00 36.40 2.29
543 571 4.869861 TGCTGCTGAAGTTTTTCTTTTTCC 59.130 37.500 0.00 0.00 36.40 3.13
544 572 5.111989 GCTGCTGAAGTTTTTCTTTTTCCT 58.888 37.500 0.00 0.00 36.40 3.36
545 573 5.006068 GCTGCTGAAGTTTTTCTTTTTCCTG 59.994 40.000 0.00 0.00 36.40 3.86
546 574 4.869861 TGCTGAAGTTTTTCTTTTTCCTGC 59.130 37.500 0.00 0.00 36.40 4.85
547 575 4.869861 GCTGAAGTTTTTCTTTTTCCTGCA 59.130 37.500 0.00 0.00 36.40 4.41
548 576 5.525012 GCTGAAGTTTTTCTTTTTCCTGCAT 59.475 36.000 0.00 0.00 36.40 3.96
549 577 6.037500 GCTGAAGTTTTTCTTTTTCCTGCATT 59.962 34.615 0.00 0.00 36.40 3.56
550 578 7.538303 TGAAGTTTTTCTTTTTCCTGCATTC 57.462 32.000 0.00 0.00 36.40 2.67
551 579 7.330262 TGAAGTTTTTCTTTTTCCTGCATTCT 58.670 30.769 0.00 0.00 36.40 2.40
552 580 7.278424 TGAAGTTTTTCTTTTTCCTGCATTCTG 59.722 33.333 0.00 0.00 36.40 3.02
553 581 6.877236 AGTTTTTCTTTTTCCTGCATTCTGA 58.123 32.000 0.00 0.00 0.00 3.27
554 582 7.503549 AGTTTTTCTTTTTCCTGCATTCTGAT 58.496 30.769 0.00 0.00 0.00 2.90
555 583 7.440255 AGTTTTTCTTTTTCCTGCATTCTGATG 59.560 33.333 0.00 0.00 36.32 3.07
556 584 6.653526 TTTCTTTTTCCTGCATTCTGATGA 57.346 33.333 0.00 0.00 35.16 2.92
557 585 6.845758 TTCTTTTTCCTGCATTCTGATGAT 57.154 33.333 0.00 0.00 35.16 2.45
558 586 6.845758 TCTTTTTCCTGCATTCTGATGATT 57.154 33.333 0.00 0.00 35.16 2.57
559 587 7.235935 TCTTTTTCCTGCATTCTGATGATTT 57.764 32.000 0.00 0.00 35.16 2.17
560 588 7.673180 TCTTTTTCCTGCATTCTGATGATTTT 58.327 30.769 0.00 0.00 35.16 1.82
561 589 8.152246 TCTTTTTCCTGCATTCTGATGATTTTT 58.848 29.630 0.00 0.00 35.16 1.94
585 613 5.365021 TTTTCATTTGTTCCATGGTTGGT 57.635 34.783 12.58 0.00 44.06 3.67
586 614 4.333913 TTCATTTGTTCCATGGTTGGTG 57.666 40.909 12.58 5.09 44.06 4.17
587 615 3.570540 TCATTTGTTCCATGGTTGGTGA 58.429 40.909 12.58 7.34 44.06 4.02
588 616 3.573538 TCATTTGTTCCATGGTTGGTGAG 59.426 43.478 12.58 0.00 44.06 3.51
589 617 2.746279 TTGTTCCATGGTTGGTGAGT 57.254 45.000 12.58 0.00 44.06 3.41
590 618 2.746279 TGTTCCATGGTTGGTGAGTT 57.254 45.000 12.58 0.00 44.06 3.01
591 619 3.025322 TGTTCCATGGTTGGTGAGTTT 57.975 42.857 12.58 0.00 44.06 2.66
592 620 3.370104 TGTTCCATGGTTGGTGAGTTTT 58.630 40.909 12.58 0.00 44.06 2.43
593 621 3.131933 TGTTCCATGGTTGGTGAGTTTTG 59.868 43.478 12.58 0.00 44.06 2.44
594 622 3.025322 TCCATGGTTGGTGAGTTTTGT 57.975 42.857 12.58 0.00 44.06 2.83
595 623 2.692557 TCCATGGTTGGTGAGTTTTGTG 59.307 45.455 12.58 0.00 44.06 3.33
596 624 2.472816 CATGGTTGGTGAGTTTTGTGC 58.527 47.619 0.00 0.00 0.00 4.57
597 625 1.550327 TGGTTGGTGAGTTTTGTGCA 58.450 45.000 0.00 0.00 0.00 4.57
598 626 1.895798 TGGTTGGTGAGTTTTGTGCAA 59.104 42.857 0.00 0.00 0.00 4.08
599 627 2.499289 TGGTTGGTGAGTTTTGTGCAAT 59.501 40.909 0.00 0.00 0.00 3.56
600 628 3.123050 GGTTGGTGAGTTTTGTGCAATC 58.877 45.455 0.00 0.00 0.00 2.67
601 629 2.772568 TGGTGAGTTTTGTGCAATCG 57.227 45.000 0.00 0.00 0.00 3.34
602 630 1.268999 TGGTGAGTTTTGTGCAATCGC 60.269 47.619 0.00 0.00 39.24 4.58
603 631 1.001378 GGTGAGTTTTGTGCAATCGCT 60.001 47.619 0.00 0.00 39.64 4.93
604 632 2.225491 GGTGAGTTTTGTGCAATCGCTA 59.775 45.455 0.00 0.00 39.64 4.26
605 633 3.226347 GTGAGTTTTGTGCAATCGCTAC 58.774 45.455 0.00 0.00 39.64 3.58
623 651 3.114616 CTTGTGAGGGCGTCAGCG 61.115 66.667 10.61 0.00 46.35 5.18
633 661 0.382515 GGCGTCAGCGTAGATTCTCT 59.617 55.000 0.00 0.00 46.35 3.10
639 667 1.849219 CAGCGTAGATTCTCTCGCAAC 59.151 52.381 26.13 5.71 41.76 4.17
645 673 0.371645 GATTCTCTCGCAACTTGCCG 59.628 55.000 8.20 4.03 41.12 5.69
646 674 0.037326 ATTCTCTCGCAACTTGCCGA 60.037 50.000 8.20 7.90 41.12 5.54
647 675 0.037326 TTCTCTCGCAACTTGCCGAT 60.037 50.000 8.20 0.00 41.12 4.18
648 676 0.737367 TCTCTCGCAACTTGCCGATG 60.737 55.000 8.20 5.65 41.12 3.84
649 677 2.099062 CTCGCAACTTGCCGATGC 59.901 61.111 8.20 0.00 41.12 3.91
650 678 2.358615 TCGCAACTTGCCGATGCT 60.359 55.556 8.20 0.00 41.12 3.79
651 679 1.915614 CTCGCAACTTGCCGATGCTT 61.916 55.000 8.20 0.00 41.12 3.91
652 680 1.081242 CGCAACTTGCCGATGCTTT 60.081 52.632 8.20 0.00 41.12 3.51
653 681 1.339235 CGCAACTTGCCGATGCTTTG 61.339 55.000 8.20 0.00 41.12 2.77
654 682 0.318955 GCAACTTGCCGATGCTTTGT 60.319 50.000 1.95 0.00 38.29 2.83
655 683 1.411394 CAACTTGCCGATGCTTTGTG 58.589 50.000 0.00 0.00 38.71 3.33
656 684 1.001487 CAACTTGCCGATGCTTTGTGA 60.001 47.619 0.00 0.00 38.71 3.58
657 685 1.317613 ACTTGCCGATGCTTTGTGAA 58.682 45.000 0.00 0.00 38.71 3.18
658 686 1.680735 ACTTGCCGATGCTTTGTGAAA 59.319 42.857 0.00 0.00 38.71 2.69
659 687 2.053627 CTTGCCGATGCTTTGTGAAAC 58.946 47.619 0.00 0.00 38.71 2.78
660 688 1.028130 TGCCGATGCTTTGTGAAACA 58.972 45.000 0.00 0.00 42.02 2.83
661 689 1.001487 TGCCGATGCTTTGTGAAACAG 60.001 47.619 0.00 0.00 43.82 3.16
662 690 1.666888 GCCGATGCTTTGTGAAACAGG 60.667 52.381 0.00 0.00 41.17 4.00
663 691 4.838252 GCCGATGCTTTGTGAAACAGGG 62.838 54.545 0.00 0.00 41.17 4.45
672 700 3.737559 TGTGAAACAGGGCAGGATATT 57.262 42.857 0.00 0.00 45.67 1.28
673 701 3.355378 TGTGAAACAGGGCAGGATATTG 58.645 45.455 0.00 0.00 45.67 1.90
674 702 3.245229 TGTGAAACAGGGCAGGATATTGT 60.245 43.478 0.00 0.00 45.67 2.71
675 703 3.378427 GTGAAACAGGGCAGGATATTGTC 59.622 47.826 0.00 0.00 36.32 3.18
676 704 3.266772 TGAAACAGGGCAGGATATTGTCT 59.733 43.478 0.00 0.00 0.00 3.41
677 705 4.263905 TGAAACAGGGCAGGATATTGTCTT 60.264 41.667 0.00 0.00 0.00 3.01
678 706 4.322057 AACAGGGCAGGATATTGTCTTT 57.678 40.909 0.00 0.00 0.00 2.52
679 707 4.322057 ACAGGGCAGGATATTGTCTTTT 57.678 40.909 0.00 0.00 0.00 2.27
680 708 4.019174 ACAGGGCAGGATATTGTCTTTTG 58.981 43.478 0.00 0.00 0.00 2.44
681 709 3.026694 AGGGCAGGATATTGTCTTTTGC 58.973 45.455 0.00 0.00 0.00 3.68
682 710 3.026694 GGGCAGGATATTGTCTTTTGCT 58.973 45.455 0.00 0.00 32.84 3.91
683 711 3.448660 GGGCAGGATATTGTCTTTTGCTT 59.551 43.478 0.00 0.00 32.84 3.91
684 712 4.081476 GGGCAGGATATTGTCTTTTGCTTT 60.081 41.667 0.00 0.00 32.84 3.51
685 713 4.866486 GGCAGGATATTGTCTTTTGCTTTG 59.134 41.667 0.00 0.00 32.84 2.77
686 714 4.328169 GCAGGATATTGTCTTTTGCTTTGC 59.672 41.667 0.00 0.00 0.00 3.68
687 715 5.472148 CAGGATATTGTCTTTTGCTTTGCA 58.528 37.500 0.00 0.00 36.47 4.08
688 716 5.346822 CAGGATATTGTCTTTTGCTTTGCAC 59.653 40.000 0.00 0.00 38.71 4.57
689 717 5.010922 AGGATATTGTCTTTTGCTTTGCACA 59.989 36.000 0.00 0.00 38.71 4.57
690 718 5.870978 GGATATTGTCTTTTGCTTTGCACAT 59.129 36.000 0.00 0.00 38.71 3.21
691 719 6.369615 GGATATTGTCTTTTGCTTTGCACATT 59.630 34.615 0.00 0.00 38.71 2.71
692 720 7.095102 GGATATTGTCTTTTGCTTTGCACATTT 60.095 33.333 0.00 0.00 38.71 2.32
693 721 5.876612 TTGTCTTTTGCTTTGCACATTTT 57.123 30.435 0.00 0.00 38.71 1.82
694 722 5.876612 TGTCTTTTGCTTTGCACATTTTT 57.123 30.435 0.00 0.00 38.71 1.94
695 723 5.867166 TGTCTTTTGCTTTGCACATTTTTC 58.133 33.333 0.00 0.00 38.71 2.29
696 724 5.410746 TGTCTTTTGCTTTGCACATTTTTCA 59.589 32.000 0.00 0.00 38.71 2.69
697 725 6.072838 TGTCTTTTGCTTTGCACATTTTTCAA 60.073 30.769 0.00 0.00 38.71 2.69
698 726 6.800892 GTCTTTTGCTTTGCACATTTTTCAAA 59.199 30.769 0.00 0.00 38.71 2.69
699 727 7.325579 GTCTTTTGCTTTGCACATTTTTCAAAA 59.674 29.630 0.00 0.00 38.71 2.44
700 728 8.027771 TCTTTTGCTTTGCACATTTTTCAAAAT 58.972 25.926 0.00 0.00 38.71 1.82
701 729 8.530269 TTTTGCTTTGCACATTTTTCAAAATT 57.470 23.077 0.00 0.00 38.71 1.82
702 730 8.530269 TTTGCTTTGCACATTTTTCAAAATTT 57.470 23.077 0.00 0.00 38.71 1.82
703 731 7.737525 TGCTTTGCACATTTTTCAAAATTTC 57.262 28.000 0.00 0.00 33.11 2.17
704 732 7.310664 TGCTTTGCACATTTTTCAAAATTTCA 58.689 26.923 0.00 0.00 33.11 2.69
705 733 7.974501 TGCTTTGCACATTTTTCAAAATTTCAT 59.025 25.926 0.00 0.00 33.11 2.57
734 762 9.535878 TTTTTGTGACTTGAAAATTATACCACC 57.464 29.630 0.00 0.00 0.00 4.61
735 763 6.489127 TGTGACTTGAAAATTATACCACCG 57.511 37.500 0.00 0.00 0.00 4.94
736 764 6.231951 TGTGACTTGAAAATTATACCACCGA 58.768 36.000 0.00 0.00 0.00 4.69
737 765 6.711194 TGTGACTTGAAAATTATACCACCGAA 59.289 34.615 0.00 0.00 0.00 4.30
738 766 7.228906 TGTGACTTGAAAATTATACCACCGAAA 59.771 33.333 0.00 0.00 0.00 3.46
739 767 8.077386 GTGACTTGAAAATTATACCACCGAAAA 58.923 33.333 0.00 0.00 0.00 2.29
740 768 8.077386 TGACTTGAAAATTATACCACCGAAAAC 58.923 33.333 0.00 0.00 0.00 2.43
742 770 8.635328 ACTTGAAAATTATACCACCGAAAACTT 58.365 29.630 0.00 0.00 0.00 2.66
743 771 9.124807 CTTGAAAATTATACCACCGAAAACTTC 57.875 33.333 0.00 0.00 0.00 3.01
744 772 8.398878 TGAAAATTATACCACCGAAAACTTCT 57.601 30.769 0.00 0.00 0.00 2.85
748 776 9.687210 AAATTATACCACCGAAAACTTCTTTTC 57.313 29.630 0.00 0.00 41.32 2.29
749 777 7.804843 TTATACCACCGAAAACTTCTTTTCA 57.195 32.000 6.71 0.00 43.87 2.69
750 778 6.702716 ATACCACCGAAAACTTCTTTTCAA 57.297 33.333 6.71 0.00 43.87 2.69
751 779 5.592104 ACCACCGAAAACTTCTTTTCAAT 57.408 34.783 6.71 0.00 43.87 2.57
752 780 6.702716 ACCACCGAAAACTTCTTTTCAATA 57.297 33.333 6.71 0.00 43.87 1.90
753 781 7.284919 ACCACCGAAAACTTCTTTTCAATAT 57.715 32.000 6.71 0.00 43.87 1.28
754 782 7.145323 ACCACCGAAAACTTCTTTTCAATATG 58.855 34.615 6.71 0.31 43.87 1.78
755 783 7.013846 ACCACCGAAAACTTCTTTTCAATATGA 59.986 33.333 6.71 0.00 43.87 2.15
756 784 7.865385 CCACCGAAAACTTCTTTTCAATATGAA 59.135 33.333 6.71 0.00 43.87 2.57
757 785 9.410556 CACCGAAAACTTCTTTTCAATATGAAT 57.589 29.630 6.71 0.00 43.87 2.57
758 786 9.981114 ACCGAAAACTTCTTTTCAATATGAATT 57.019 25.926 6.71 0.00 43.87 2.17
764 792 8.970691 ACTTCTTTTCAATATGAATTCAACGG 57.029 30.769 13.09 3.01 36.11 4.44
765 793 8.576442 ACTTCTTTTCAATATGAATTCAACGGT 58.424 29.630 13.09 0.00 36.11 4.83
768 796 9.443323 TCTTTTCAATATGAATTCAACGGTAGA 57.557 29.630 13.09 5.66 36.11 2.59
781 809 6.371809 TCAACGGTAGAATTCATATTTGGC 57.628 37.500 8.44 0.00 0.00 4.52
782 810 6.119536 TCAACGGTAGAATTCATATTTGGCT 58.880 36.000 8.44 0.00 0.00 4.75
783 811 6.038161 TCAACGGTAGAATTCATATTTGGCTG 59.962 38.462 8.44 0.00 0.00 4.85
784 812 4.821805 ACGGTAGAATTCATATTTGGCTGG 59.178 41.667 8.44 0.00 0.00 4.85
785 813 4.821805 CGGTAGAATTCATATTTGGCTGGT 59.178 41.667 8.44 0.00 0.00 4.00
786 814 5.299279 CGGTAGAATTCATATTTGGCTGGTT 59.701 40.000 8.44 0.00 0.00 3.67
787 815 6.183360 CGGTAGAATTCATATTTGGCTGGTTT 60.183 38.462 8.44 0.00 0.00 3.27
788 816 7.012894 CGGTAGAATTCATATTTGGCTGGTTTA 59.987 37.037 8.44 0.00 0.00 2.01
789 817 8.352942 GGTAGAATTCATATTTGGCTGGTTTAG 58.647 37.037 8.44 0.00 0.00 1.85
790 818 7.961326 AGAATTCATATTTGGCTGGTTTAGT 57.039 32.000 8.44 0.00 0.00 2.24
791 819 8.366359 AGAATTCATATTTGGCTGGTTTAGTT 57.634 30.769 8.44 0.00 0.00 2.24
792 820 8.815912 AGAATTCATATTTGGCTGGTTTAGTTT 58.184 29.630 8.44 0.00 0.00 2.66
796 824 8.006298 TCATATTTGGCTGGTTTAGTTTATGG 57.994 34.615 0.00 0.00 0.00 2.74
797 825 7.617723 TCATATTTGGCTGGTTTAGTTTATGGT 59.382 33.333 0.00 0.00 0.00 3.55
798 826 5.715434 TTTGGCTGGTTTAGTTTATGGTC 57.285 39.130 0.00 0.00 0.00 4.02
799 827 4.374689 TGGCTGGTTTAGTTTATGGTCA 57.625 40.909 0.00 0.00 0.00 4.02
800 828 4.730966 TGGCTGGTTTAGTTTATGGTCAA 58.269 39.130 0.00 0.00 0.00 3.18
801 829 5.141182 TGGCTGGTTTAGTTTATGGTCAAA 58.859 37.500 0.00 0.00 0.00 2.69
802 830 5.777732 TGGCTGGTTTAGTTTATGGTCAAAT 59.222 36.000 0.00 0.00 0.00 2.32
803 831 6.268847 TGGCTGGTTTAGTTTATGGTCAAATT 59.731 34.615 0.00 0.00 0.00 1.82
804 832 7.158697 GGCTGGTTTAGTTTATGGTCAAATTT 58.841 34.615 0.00 0.00 0.00 1.82
805 833 7.659799 GGCTGGTTTAGTTTATGGTCAAATTTT 59.340 33.333 0.00 0.00 0.00 1.82
806 834 8.495148 GCTGGTTTAGTTTATGGTCAAATTTTG 58.505 33.333 2.59 2.59 0.00 2.44
807 835 8.894768 TGGTTTAGTTTATGGTCAAATTTTGG 57.105 30.769 9.18 0.00 0.00 3.28
808 836 8.705594 TGGTTTAGTTTATGGTCAAATTTTGGA 58.294 29.630 9.18 0.00 0.00 3.53
809 837 9.719355 GGTTTAGTTTATGGTCAAATTTTGGAT 57.281 29.630 9.18 2.77 0.00 3.41
820 848 9.270640 TGGTCAAATTTTGGATTTTTAGATGTG 57.729 29.630 9.18 0.00 0.00 3.21
821 849 8.720562 GGTCAAATTTTGGATTTTTAGATGTGG 58.279 33.333 9.18 0.00 0.00 4.17
822 850 8.720562 GTCAAATTTTGGATTTTTAGATGTGGG 58.279 33.333 9.18 0.00 0.00 4.61
823 851 7.390162 TCAAATTTTGGATTTTTAGATGTGGGC 59.610 33.333 9.18 0.00 0.00 5.36
824 852 4.448537 TTTGGATTTTTAGATGTGGGCG 57.551 40.909 0.00 0.00 0.00 6.13
825 853 3.358111 TGGATTTTTAGATGTGGGCGA 57.642 42.857 0.00 0.00 0.00 5.54
826 854 3.013921 TGGATTTTTAGATGTGGGCGAC 58.986 45.455 0.00 0.00 0.00 5.19
827 855 2.031683 GGATTTTTAGATGTGGGCGACG 59.968 50.000 0.00 0.00 0.00 5.12
828 856 2.172851 TTTTTAGATGTGGGCGACGT 57.827 45.000 0.00 0.00 0.00 4.34
829 857 1.717194 TTTTAGATGTGGGCGACGTC 58.283 50.000 13.30 13.30 40.50 4.34
831 859 0.454600 TTAGATGTGGGCGACGTCTC 59.545 55.000 24.88 5.30 46.39 3.36
832 860 1.712018 TAGATGTGGGCGACGTCTCG 61.712 60.000 24.88 2.72 46.39 4.04
833 861 4.129737 ATGTGGGCGACGTCTCGG 62.130 66.667 14.70 0.00 40.53 4.63
835 863 3.434319 GTGGGCGACGTCTCGGTA 61.434 66.667 14.70 0.00 40.53 4.02
836 864 3.434319 TGGGCGACGTCTCGGTAC 61.434 66.667 14.70 0.00 40.53 3.34
841 869 0.387750 GCGACGTCTCGGTACCTTTT 60.388 55.000 14.70 0.00 40.53 2.27
849 877 4.124970 GTCTCGGTACCTTTTGTCTTTGT 58.875 43.478 10.90 0.00 0.00 2.83
851 879 3.207778 TCGGTACCTTTTGTCTTTGTGG 58.792 45.455 10.90 0.00 0.00 4.17
853 881 2.691011 GGTACCTTTTGTCTTTGTGGCA 59.309 45.455 4.06 0.00 0.00 4.92
854 882 3.320826 GGTACCTTTTGTCTTTGTGGCAT 59.679 43.478 4.06 0.00 0.00 4.40
855 883 3.733443 ACCTTTTGTCTTTGTGGCATC 57.267 42.857 0.00 0.00 0.00 3.91
857 901 4.469657 ACCTTTTGTCTTTGTGGCATCTA 58.530 39.130 0.00 0.00 0.00 1.98
877 921 1.598962 CAGAGTGTGCACCCACTGG 60.599 63.158 16.76 5.40 45.46 4.00
952 1022 1.968017 CCGCAAAGCAGAGCAGGAA 60.968 57.895 0.00 0.00 0.00 3.36
953 1023 1.500844 CGCAAAGCAGAGCAGGAAG 59.499 57.895 0.00 0.00 0.00 3.46
954 1024 1.881602 GCAAAGCAGAGCAGGAAGG 59.118 57.895 0.00 0.00 0.00 3.46
955 1025 0.607489 GCAAAGCAGAGCAGGAAGGA 60.607 55.000 0.00 0.00 0.00 3.36
1010 1082 4.410400 CCCACTTCCCACCGAGCC 62.410 72.222 0.00 0.00 0.00 4.70
1011 1083 3.322466 CCACTTCCCACCGAGCCT 61.322 66.667 0.00 0.00 0.00 4.58
1064 1151 2.125188 GCTCAGCTCAGCTCACCC 60.125 66.667 0.67 0.00 36.40 4.61
1065 1152 2.583520 CTCAGCTCAGCTCACCCC 59.416 66.667 0.00 0.00 36.40 4.95
1066 1153 1.988956 CTCAGCTCAGCTCACCCCT 60.989 63.158 0.00 0.00 36.40 4.79
1067 1154 1.958902 CTCAGCTCAGCTCACCCCTC 61.959 65.000 0.00 0.00 36.40 4.30
1068 1155 3.073735 AGCTCAGCTCACCCCTCG 61.074 66.667 0.00 0.00 30.62 4.63
1069 1156 4.828925 GCTCAGCTCACCCCTCGC 62.829 72.222 0.00 0.00 0.00 5.03
1070 1157 3.385384 CTCAGCTCACCCCTCGCA 61.385 66.667 0.00 0.00 0.00 5.10
1071 1158 3.368190 CTCAGCTCACCCCTCGCAG 62.368 68.421 0.00 0.00 0.00 5.18
1506 1593 3.047877 GTGTTCCCCTTCACGCCG 61.048 66.667 0.00 0.00 0.00 6.46
1507 1594 3.235481 TGTTCCCCTTCACGCCGA 61.235 61.111 0.00 0.00 0.00 5.54
1509 1596 3.702048 TTCCCCTTCACGCCGAGG 61.702 66.667 0.00 0.00 0.00 4.63
1738 1995 8.936864 AGTATAATATCTTTTACGCCATTCTGC 58.063 33.333 0.00 0.00 0.00 4.26
1773 2050 9.087424 GTGCATTCTTTCTTTCAGTTTAAAGTT 57.913 29.630 0.00 0.00 37.65 2.66
1774 2051 9.086336 TGCATTCTTTCTTTCAGTTTAAAGTTG 57.914 29.630 0.00 0.00 37.65 3.16
1796 2073 1.284657 GATCATGGTCTGCACGACTG 58.715 55.000 13.59 7.39 42.44 3.51
1871 2155 9.398170 ACAAAATTCTGAACTATTTTCATCACG 57.602 29.630 0.00 0.00 33.04 4.35
1880 2164 8.998377 TGAACTATTTTCATCACGAATTCAGAA 58.002 29.630 6.22 0.00 32.32 3.02
1881 2165 9.825972 GAACTATTTTCATCACGAATTCAGAAA 57.174 29.630 6.22 4.90 32.32 2.52
1906 2190 1.476891 GACTCCAGGTGACGCTTCATA 59.523 52.381 0.00 0.00 33.11 2.15
2281 2566 2.096218 GCTCCGTTTTCTGTGTGATGAC 60.096 50.000 0.00 0.00 0.00 3.06
2294 2582 6.818142 TCTGTGTGATGACGATGACAAATAAT 59.182 34.615 0.00 0.00 26.40 1.28
2412 2733 5.505181 AATCATATGAGCGGGGATTAAGT 57.495 39.130 11.78 0.00 0.00 2.24
2413 2734 4.537135 TCATATGAGCGGGGATTAAGTC 57.463 45.455 0.00 0.00 0.00 3.01
2414 2735 3.901222 TCATATGAGCGGGGATTAAGTCA 59.099 43.478 0.00 0.00 0.00 3.41
2415 2736 2.918712 ATGAGCGGGGATTAAGTCAG 57.081 50.000 0.00 0.00 0.00 3.51
2416 2737 0.830648 TGAGCGGGGATTAAGTCAGG 59.169 55.000 0.00 0.00 0.00 3.86
2417 2738 0.106894 GAGCGGGGATTAAGTCAGGG 59.893 60.000 0.00 0.00 0.00 4.45
2419 2740 1.342672 GCGGGGATTAAGTCAGGGGA 61.343 60.000 0.00 0.00 0.00 4.81
2421 2742 1.774856 CGGGGATTAAGTCAGGGGAAT 59.225 52.381 0.00 0.00 0.00 3.01
2423 2744 2.514160 GGGGATTAAGTCAGGGGAATGT 59.486 50.000 0.00 0.00 0.00 2.71
2425 2746 4.572007 GGGGATTAAGTCAGGGGAATGTTT 60.572 45.833 0.00 0.00 0.00 2.83
2426 2747 5.023452 GGGATTAAGTCAGGGGAATGTTTT 58.977 41.667 0.00 0.00 0.00 2.43
2427 2748 5.105351 GGGATTAAGTCAGGGGAATGTTTTG 60.105 44.000 0.00 0.00 0.00 2.44
2428 2749 5.714806 GGATTAAGTCAGGGGAATGTTTTGA 59.285 40.000 0.00 0.00 0.00 2.69
2429 2750 6.210584 GGATTAAGTCAGGGGAATGTTTTGAA 59.789 38.462 0.00 0.00 0.00 2.69
2430 2751 7.256154 GGATTAAGTCAGGGGAATGTTTTGAAA 60.256 37.037 0.00 0.00 0.00 2.69
2431 2752 4.937201 AGTCAGGGGAATGTTTTGAAAC 57.063 40.909 0.00 0.00 39.33 2.78
2433 2754 2.625790 TCAGGGGAATGTTTTGAAACCG 59.374 45.455 4.32 0.00 38.11 4.44
2435 2756 3.258123 CAGGGGAATGTTTTGAAACCGAT 59.742 43.478 4.32 0.00 38.11 4.18
2437 2758 3.993736 GGGGAATGTTTTGAAACCGATTG 59.006 43.478 4.32 0.00 38.11 2.67
2438 2759 4.262249 GGGGAATGTTTTGAAACCGATTGA 60.262 41.667 4.32 0.00 38.11 2.57
2439 2760 5.293560 GGGAATGTTTTGAAACCGATTGAA 58.706 37.500 4.32 0.00 38.11 2.69
2440 2761 5.931724 GGGAATGTTTTGAAACCGATTGAAT 59.068 36.000 4.32 0.00 38.11 2.57
2442 2763 7.763985 GGGAATGTTTTGAAACCGATTGAATAT 59.236 33.333 4.32 0.00 38.11 1.28
2446 2767 7.437748 TGTTTTGAAACCGATTGAATATTGGT 58.562 30.769 0.00 0.00 38.11 3.67
2450 2771 5.356751 TGAAACCGATTGAATATTGGTCTGG 59.643 40.000 0.00 0.00 34.79 3.86
2451 2772 3.820557 ACCGATTGAATATTGGTCTGGG 58.179 45.455 0.00 0.00 29.99 4.45
2452 2773 3.202151 ACCGATTGAATATTGGTCTGGGT 59.798 43.478 0.00 0.00 29.99 4.51
2454 2775 5.073144 ACCGATTGAATATTGGTCTGGGTAT 59.927 40.000 0.00 0.00 29.99 2.73
2461 2782 6.605594 TGAATATTGGTCTGGGTATTTTCCAC 59.394 38.462 0.00 0.00 0.00 4.02
2467 2788 2.027561 TCTGGGTATTTTCCACCGAGTG 60.028 50.000 3.88 0.00 41.30 3.51
2468 2789 1.979308 TGGGTATTTTCCACCGAGTGA 59.021 47.619 5.71 0.00 36.89 3.41
2469 2790 2.372504 TGGGTATTTTCCACCGAGTGAA 59.627 45.455 5.71 0.00 36.89 3.18
2470 2791 3.009695 TGGGTATTTTCCACCGAGTGAAT 59.990 43.478 5.71 1.63 36.89 2.57
2471 2792 4.225492 TGGGTATTTTCCACCGAGTGAATA 59.775 41.667 5.71 0.85 36.89 1.75
2472 2793 4.573607 GGGTATTTTCCACCGAGTGAATAC 59.426 45.833 5.71 10.30 36.89 1.89
2474 2795 2.773993 TTTCCACCGAGTGAATACCC 57.226 50.000 5.71 0.00 35.23 3.69
2475 2796 1.646912 TTCCACCGAGTGAATACCCA 58.353 50.000 5.71 0.00 35.23 4.51
2477 2798 0.107848 CCACCGAGTGAATACCCACC 60.108 60.000 5.71 0.00 37.76 4.61
2479 2800 1.134788 CACCGAGTGAATACCCACCTC 60.135 57.143 0.00 0.00 37.76 3.85
2480 2801 1.191535 CCGAGTGAATACCCACCTCA 58.808 55.000 0.00 0.00 37.76 3.86
2481 2802 1.762957 CCGAGTGAATACCCACCTCAT 59.237 52.381 0.00 0.00 37.76 2.90
2483 2804 2.543861 CGAGTGAATACCCACCTCATCG 60.544 54.545 0.00 0.00 37.76 3.84
2484 2805 2.693591 GAGTGAATACCCACCTCATCGA 59.306 50.000 0.00 0.00 37.76 3.59
2485 2806 2.431057 AGTGAATACCCACCTCATCGAC 59.569 50.000 0.00 0.00 37.76 4.20
2486 2807 2.431057 GTGAATACCCACCTCATCGACT 59.569 50.000 0.00 0.00 0.00 4.18
2489 2810 3.596940 ATACCCACCTCATCGACTAGT 57.403 47.619 0.00 0.00 0.00 2.57
2490 2811 1.475403 ACCCACCTCATCGACTAGTG 58.525 55.000 0.00 0.00 0.00 2.74
2491 2812 0.103208 CCCACCTCATCGACTAGTGC 59.897 60.000 0.00 0.00 0.00 4.40
2492 2813 0.103208 CCACCTCATCGACTAGTGCC 59.897 60.000 0.00 0.00 0.00 5.01
2493 2814 0.103208 CACCTCATCGACTAGTGCCC 59.897 60.000 0.00 0.00 0.00 5.36
2496 2817 0.387202 CTCATCGACTAGTGCCCAGG 59.613 60.000 0.00 0.00 0.00 4.45
2497 2818 0.033503 TCATCGACTAGTGCCCAGGA 60.034 55.000 0.00 0.00 0.00 3.86
2498 2819 0.824109 CATCGACTAGTGCCCAGGAA 59.176 55.000 0.00 0.00 0.00 3.36
2499 2820 1.207089 CATCGACTAGTGCCCAGGAAA 59.793 52.381 0.00 0.00 0.00 3.13
2500 2821 1.344065 TCGACTAGTGCCCAGGAAAA 58.656 50.000 0.00 0.00 0.00 2.29
2501 2822 1.695242 TCGACTAGTGCCCAGGAAAAA 59.305 47.619 0.00 0.00 0.00 1.94
2502 2823 2.304761 TCGACTAGTGCCCAGGAAAAAT 59.695 45.455 0.00 0.00 0.00 1.82
2503 2824 2.420022 CGACTAGTGCCCAGGAAAAATG 59.580 50.000 0.00 0.00 0.00 2.32
2504 2825 3.686016 GACTAGTGCCCAGGAAAAATGA 58.314 45.455 0.00 0.00 0.00 2.57
2505 2826 3.421844 ACTAGTGCCCAGGAAAAATGAC 58.578 45.455 0.00 0.00 0.00 3.06
2506 2827 2.683211 AGTGCCCAGGAAAAATGACT 57.317 45.000 0.00 0.00 0.00 3.41
2524 2845 4.709250 TGACTAGTGCGTCTAGAGATCAT 58.291 43.478 18.38 0.19 46.53 2.45
2525 2846 5.855045 TGACTAGTGCGTCTAGAGATCATA 58.145 41.667 18.38 0.00 46.53 2.15
2526 2847 6.468543 TGACTAGTGCGTCTAGAGATCATAT 58.531 40.000 18.38 0.00 46.53 1.78
2529 2851 6.712998 ACTAGTGCGTCTAGAGATCATATTGT 59.287 38.462 18.38 0.00 46.53 2.71
2547 2869 9.004717 TCATATTGTTCTGAAACCGATTGTAAA 57.995 29.630 0.00 0.00 34.28 2.01
2550 2872 6.687081 TGTTCTGAAACCGATTGTAAAACT 57.313 33.333 0.00 0.00 34.28 2.66
2554 2876 5.992829 TCTGAAACCGATTGTAAAACTGCTA 59.007 36.000 0.00 0.00 0.00 3.49
2565 2887 9.443283 GATTGTAAAACTGCTATGCAAGATTAG 57.557 33.333 0.00 0.00 38.41 1.73
2568 2890 3.185246 ACTGCTATGCAAGATTAGCGT 57.815 42.857 11.39 9.52 42.99 5.07
2572 2894 3.557185 TGCTATGCAAGATTAGCGTTCTG 59.443 43.478 11.39 0.00 42.99 3.02
2579 2901 4.319477 GCAAGATTAGCGTTCTGAAACACA 60.319 41.667 0.00 0.00 34.93 3.72
2580 2902 5.617751 GCAAGATTAGCGTTCTGAAACACAT 60.618 40.000 0.00 0.00 34.93 3.21
2581 2903 6.373779 CAAGATTAGCGTTCTGAAACACATT 58.626 36.000 0.00 0.00 34.93 2.71
2582 2904 5.931532 AGATTAGCGTTCTGAAACACATTG 58.068 37.500 0.00 0.00 34.93 2.82
2583 2905 2.405892 AGCGTTCTGAAACACATTGC 57.594 45.000 0.00 0.00 34.93 3.56
2584 2906 1.949525 AGCGTTCTGAAACACATTGCT 59.050 42.857 0.00 0.00 34.93 3.91
2585 2907 3.138304 AGCGTTCTGAAACACATTGCTA 58.862 40.909 0.00 0.00 34.93 3.49
2586 2908 3.058914 AGCGTTCTGAAACACATTGCTAC 60.059 43.478 0.00 0.00 34.93 3.58
2587 2909 3.303725 GCGTTCTGAAACACATTGCTACA 60.304 43.478 0.00 0.00 34.93 2.74
2588 2910 4.457810 CGTTCTGAAACACATTGCTACAG 58.542 43.478 0.00 0.00 34.93 2.74
2606 2928 2.512885 CAGAATGTTGCATCGAACAGC 58.487 47.619 0.00 0.00 39.18 4.40
2608 2930 3.371898 CAGAATGTTGCATCGAACAGCTA 59.628 43.478 8.91 0.00 39.18 3.32
2610 2932 4.093998 AGAATGTTGCATCGAACAGCTAAG 59.906 41.667 8.91 0.00 39.18 2.18
2612 2934 2.736721 TGTTGCATCGAACAGCTAAGTC 59.263 45.455 8.91 0.00 32.05 3.01
2647 2969 6.591834 CAGGATCAGACTAAGTTTGTAACAGG 59.408 42.308 0.00 0.00 0.00 4.00
2648 2970 6.497259 AGGATCAGACTAAGTTTGTAACAGGA 59.503 38.462 0.00 0.00 0.00 3.86
2649 2971 7.181125 AGGATCAGACTAAGTTTGTAACAGGAT 59.819 37.037 0.00 0.00 0.00 3.24
2656 2978 7.097834 ACTAAGTTTGTAACAGGATGCTCTAC 58.902 38.462 0.00 0.00 42.53 2.59
2659 2981 6.296026 AGTTTGTAACAGGATGCTCTACAAA 58.704 36.000 19.29 19.29 42.53 2.83
2664 2986 4.623932 ACAGGATGCTCTACAAAGTTGA 57.376 40.909 0.00 0.00 42.53 3.18
2666 2988 5.564550 ACAGGATGCTCTACAAAGTTGATT 58.435 37.500 0.00 0.00 42.53 2.57
2671 2993 6.037610 GGATGCTCTACAAAGTTGATTAGGTG 59.962 42.308 0.00 0.00 0.00 4.00
2672 2994 4.695455 TGCTCTACAAAGTTGATTAGGTGC 59.305 41.667 0.00 1.02 0.00 5.01
2673 2995 4.695455 GCTCTACAAAGTTGATTAGGTGCA 59.305 41.667 0.00 0.00 0.00 4.57
2674 2996 5.355350 GCTCTACAAAGTTGATTAGGTGCAT 59.645 40.000 0.00 0.00 0.00 3.96
2675 2997 6.127897 GCTCTACAAAGTTGATTAGGTGCATT 60.128 38.462 0.00 0.00 0.00 3.56
2676 2998 7.065803 GCTCTACAAAGTTGATTAGGTGCATTA 59.934 37.037 0.00 0.00 0.00 1.90
2677 2999 8.263940 TCTACAAAGTTGATTAGGTGCATTAC 57.736 34.615 0.00 0.00 0.00 1.89
2678 3000 8.100791 TCTACAAAGTTGATTAGGTGCATTACT 58.899 33.333 0.00 0.00 0.00 2.24
2679 3001 9.378551 CTACAAAGTTGATTAGGTGCATTACTA 57.621 33.333 0.00 0.00 0.00 1.82
2680 3002 8.807948 ACAAAGTTGATTAGGTGCATTACTAT 57.192 30.769 0.00 0.00 0.00 2.12
2681 3003 9.243105 ACAAAGTTGATTAGGTGCATTACTATT 57.757 29.630 0.00 0.00 0.00 1.73
2682 3004 9.507280 CAAAGTTGATTAGGTGCATTACTATTG 57.493 33.333 0.00 0.00 0.00 1.90
2683 3005 7.264373 AGTTGATTAGGTGCATTACTATTGC 57.736 36.000 0.00 0.00 40.55 3.56
2684 3006 7.056635 AGTTGATTAGGTGCATTACTATTGCT 58.943 34.615 0.00 0.00 40.77 3.91
2685 3007 8.210946 AGTTGATTAGGTGCATTACTATTGCTA 58.789 33.333 0.00 0.00 40.77 3.49
2686 3008 9.003658 GTTGATTAGGTGCATTACTATTGCTAT 57.996 33.333 0.00 0.00 40.77 2.97
2751 3073 3.679389 AGGAGCATCGAACAGTTGAAAT 58.321 40.909 0.00 0.00 34.37 2.17
2752 3074 3.686726 AGGAGCATCGAACAGTTGAAATC 59.313 43.478 0.00 0.00 34.37 2.17
2753 3075 3.436704 GGAGCATCGAACAGTTGAAATCA 59.563 43.478 0.00 0.00 34.37 2.57
2769 3138 2.124011 ATCACAGCAAAGCAAACACG 57.876 45.000 0.00 0.00 0.00 4.49
2783 3152 3.488384 GCAAACACGACACCAATTCAGAA 60.488 43.478 0.00 0.00 0.00 3.02
2784 3153 4.792704 GCAAACACGACACCAATTCAGAAT 60.793 41.667 0.00 0.00 0.00 2.40
2793 3164 4.336433 ACACCAATTCAGAATAAGATGCCG 59.664 41.667 0.00 0.00 0.00 5.69
2800 3171 3.873361 TCAGAATAAGATGCCGCAGAAAG 59.127 43.478 0.00 0.00 0.00 2.62
2802 3173 4.025061 CAGAATAAGATGCCGCAGAAAGAG 60.025 45.833 0.00 0.00 0.00 2.85
2821 3192 1.660607 AGCAACGACATATGAACAGCG 59.339 47.619 10.38 7.32 0.00 5.18
2822 3193 1.267532 GCAACGACATATGAACAGCGG 60.268 52.381 10.38 0.00 0.00 5.52
2823 3194 1.999735 CAACGACATATGAACAGCGGT 59.000 47.619 10.38 0.83 0.00 5.68
2936 3318 2.202866 TGGAAGCTCCACGAGATCC 58.797 57.895 0.00 6.87 42.67 3.36
2937 3319 1.066587 GGAAGCTCCACGAGATCCG 59.933 63.158 0.00 2.55 45.44 4.18
2938 3320 1.066587 GAAGCTCCACGAGATCCGG 59.933 63.158 0.00 0.00 43.93 5.14
3094 3485 6.513393 CGCATTACTTCCACTTCTTGAACTTT 60.513 38.462 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 2.546795 GGTCGGTCATGCTCTAATGGAG 60.547 54.545 0.00 0.00 44.49 3.86
153 159 1.320344 AAGCGGTCGGTCATGCTCTA 61.320 55.000 0.00 0.00 36.49 2.43
219 232 3.754850 TGGACAGAGTCATTGCTCAAATG 59.245 43.478 9.67 0.00 46.10 2.32
274 288 2.801699 CGTGCCGCCATCATCTACTAAA 60.802 50.000 0.00 0.00 0.00 1.85
276 290 0.313987 CGTGCCGCCATCATCTACTA 59.686 55.000 0.00 0.00 0.00 1.82
277 291 1.068083 CGTGCCGCCATCATCTACT 59.932 57.895 0.00 0.00 0.00 2.57
278 292 0.810031 AACGTGCCGCCATCATCTAC 60.810 55.000 0.00 0.00 0.00 2.59
280 294 1.377202 AAACGTGCCGCCATCATCT 60.377 52.632 0.00 0.00 0.00 2.90
309 323 9.956720 CTAACAGGTCATTTCATCCATTAATTC 57.043 33.333 0.00 0.00 0.00 2.17
322 336 3.067106 CACGCAGTCTAACAGGTCATTT 58.933 45.455 0.00 0.00 41.61 2.32
360 374 1.886542 GTCAAACGGAAAATGGCTCCT 59.113 47.619 0.00 0.00 0.00 3.69
411 439 4.441495 GCAGAAAACTTAACAACCTTGGCT 60.441 41.667 0.00 0.00 0.00 4.75
431 459 3.878103 CTCTCTCAGGAAATCATTGGCAG 59.122 47.826 0.00 0.00 0.00 4.85
444 472 3.602103 AGCTGACGCTCTCTCAGG 58.398 61.111 2.60 0.00 45.15 3.86
447 475 7.491161 GGAGAATCTAAGCTGACGCTCTCTC 62.491 52.000 12.51 7.34 39.99 3.20
448 476 5.756734 GGAGAATCTAAGCTGACGCTCTCT 61.757 50.000 12.51 0.00 39.99 3.10
449 477 3.550030 GGAGAATCTAAGCTGACGCTCTC 60.550 52.174 0.00 0.00 39.99 3.20
450 478 2.360801 GGAGAATCTAAGCTGACGCTCT 59.639 50.000 0.00 0.00 39.99 4.09
451 479 2.544903 GGGAGAATCTAAGCTGACGCTC 60.545 54.545 0.00 0.00 39.99 5.03
452 480 1.410882 GGGAGAATCTAAGCTGACGCT 59.589 52.381 0.00 0.00 41.97 5.07
453 481 1.137086 TGGGAGAATCTAAGCTGACGC 59.863 52.381 0.00 0.00 33.73 5.19
454 482 2.166459 TGTGGGAGAATCTAAGCTGACG 59.834 50.000 0.00 0.00 33.73 4.35
455 483 3.895232 TGTGGGAGAATCTAAGCTGAC 57.105 47.619 0.00 0.00 33.73 3.51
456 484 5.441718 AATTGTGGGAGAATCTAAGCTGA 57.558 39.130 0.00 0.00 33.73 4.26
457 485 5.678107 GCAAATTGTGGGAGAATCTAAGCTG 60.678 44.000 0.00 0.00 33.73 4.24
458 486 4.400567 GCAAATTGTGGGAGAATCTAAGCT 59.599 41.667 0.00 0.00 33.73 3.74
459 487 4.440663 GGCAAATTGTGGGAGAATCTAAGC 60.441 45.833 0.00 0.00 33.73 3.09
460 488 4.706476 TGGCAAATTGTGGGAGAATCTAAG 59.294 41.667 0.00 0.00 33.73 2.18
461 489 4.671831 TGGCAAATTGTGGGAGAATCTAA 58.328 39.130 0.00 0.00 33.73 2.10
462 490 4.314522 TGGCAAATTGTGGGAGAATCTA 57.685 40.909 0.00 0.00 33.73 1.98
463 491 3.173953 TGGCAAATTGTGGGAGAATCT 57.826 42.857 0.00 0.00 33.73 2.40
464 492 3.959535 TTGGCAAATTGTGGGAGAATC 57.040 42.857 0.00 0.00 0.00 2.52
465 493 3.620472 GCATTGGCAAATTGTGGGAGAAT 60.620 43.478 3.01 0.00 40.72 2.40
466 494 2.289569 GCATTGGCAAATTGTGGGAGAA 60.290 45.455 3.01 0.00 40.72 2.87
467 495 1.275856 GCATTGGCAAATTGTGGGAGA 59.724 47.619 3.01 0.00 40.72 3.71
468 496 1.276989 AGCATTGGCAAATTGTGGGAG 59.723 47.619 3.01 0.00 44.61 4.30
469 497 1.350071 AGCATTGGCAAATTGTGGGA 58.650 45.000 3.01 0.00 44.61 4.37
470 498 1.807742 CAAGCATTGGCAAATTGTGGG 59.192 47.619 3.01 0.00 43.94 4.61
483 511 2.275380 GCCCCGTTCCACAAGCATT 61.275 57.895 0.00 0.00 0.00 3.56
484 512 2.676471 GCCCCGTTCCACAAGCAT 60.676 61.111 0.00 0.00 0.00 3.79
485 513 4.196778 TGCCCCGTTCCACAAGCA 62.197 61.111 0.00 0.00 0.00 3.91
486 514 3.365265 CTGCCCCGTTCCACAAGC 61.365 66.667 0.00 0.00 0.00 4.01
487 515 2.672996 CCTGCCCCGTTCCACAAG 60.673 66.667 0.00 0.00 0.00 3.16
488 516 2.285889 TTTCCTGCCCCGTTCCACAA 62.286 55.000 0.00 0.00 0.00 3.33
489 517 2.758207 TTTCCTGCCCCGTTCCACA 61.758 57.895 0.00 0.00 0.00 4.17
490 518 2.114411 TTTCCTGCCCCGTTCCAC 59.886 61.111 0.00 0.00 0.00 4.02
491 519 2.002018 AAGTTTCCTGCCCCGTTCCA 62.002 55.000 0.00 0.00 0.00 3.53
492 520 1.228459 AAGTTTCCTGCCCCGTTCC 60.228 57.895 0.00 0.00 0.00 3.62
493 521 0.822121 ACAAGTTTCCTGCCCCGTTC 60.822 55.000 0.00 0.00 0.00 3.95
494 522 0.396556 AACAAGTTTCCTGCCCCGTT 60.397 50.000 0.00 0.00 0.00 4.44
495 523 1.106944 CAACAAGTTTCCTGCCCCGT 61.107 55.000 0.00 0.00 0.00 5.28
496 524 0.821711 TCAACAAGTTTCCTGCCCCG 60.822 55.000 0.00 0.00 0.00 5.73
497 525 0.673985 GTCAACAAGTTTCCTGCCCC 59.326 55.000 0.00 0.00 0.00 5.80
498 526 1.692411 AGTCAACAAGTTTCCTGCCC 58.308 50.000 0.00 0.00 0.00 5.36
499 527 3.801114 AAAGTCAACAAGTTTCCTGCC 57.199 42.857 0.00 0.00 0.00 4.85
500 528 3.306973 GCAAAAGTCAACAAGTTTCCTGC 59.693 43.478 0.00 0.00 30.74 4.85
501 529 4.563976 CAGCAAAAGTCAACAAGTTTCCTG 59.436 41.667 0.00 0.00 29.96 3.86
502 530 4.747810 CAGCAAAAGTCAACAAGTTTCCT 58.252 39.130 0.00 0.00 29.96 3.36
503 531 3.306973 GCAGCAAAAGTCAACAAGTTTCC 59.693 43.478 0.00 0.00 29.96 3.13
504 532 4.032104 CAGCAGCAAAAGTCAACAAGTTTC 59.968 41.667 0.00 0.00 29.96 2.78
505 533 3.928375 CAGCAGCAAAAGTCAACAAGTTT 59.072 39.130 0.00 0.00 31.61 2.66
506 534 3.193267 TCAGCAGCAAAAGTCAACAAGTT 59.807 39.130 0.00 0.00 0.00 2.66
507 535 2.754552 TCAGCAGCAAAAGTCAACAAGT 59.245 40.909 0.00 0.00 0.00 3.16
508 536 3.425577 TCAGCAGCAAAAGTCAACAAG 57.574 42.857 0.00 0.00 0.00 3.16
509 537 3.193267 ACTTCAGCAGCAAAAGTCAACAA 59.807 39.130 6.61 0.00 0.00 2.83
510 538 2.754552 ACTTCAGCAGCAAAAGTCAACA 59.245 40.909 6.61 0.00 0.00 3.33
511 539 3.427161 ACTTCAGCAGCAAAAGTCAAC 57.573 42.857 6.61 0.00 0.00 3.18
512 540 4.454728 AAACTTCAGCAGCAAAAGTCAA 57.545 36.364 11.62 0.00 32.24 3.18
513 541 4.454728 AAAACTTCAGCAGCAAAAGTCA 57.545 36.364 11.62 0.00 32.24 3.41
514 542 5.105063 AGAAAAACTTCAGCAGCAAAAGTC 58.895 37.500 11.62 2.01 32.24 3.01
515 543 5.077134 AGAAAAACTTCAGCAGCAAAAGT 57.923 34.783 6.61 6.61 34.81 2.66
516 544 6.413018 AAAGAAAAACTTCAGCAGCAAAAG 57.587 33.333 0.00 0.00 37.93 2.27
517 545 6.799926 AAAAGAAAAACTTCAGCAGCAAAA 57.200 29.167 0.00 0.00 37.93 2.44
518 546 6.128309 GGAAAAAGAAAAACTTCAGCAGCAAA 60.128 34.615 0.00 0.00 37.93 3.68
519 547 5.351189 GGAAAAAGAAAAACTTCAGCAGCAA 59.649 36.000 0.00 0.00 37.93 3.91
520 548 4.869861 GGAAAAAGAAAAACTTCAGCAGCA 59.130 37.500 0.00 0.00 37.93 4.41
521 549 5.006068 CAGGAAAAAGAAAAACTTCAGCAGC 59.994 40.000 0.00 0.00 37.93 5.25
522 550 5.006068 GCAGGAAAAAGAAAAACTTCAGCAG 59.994 40.000 0.00 0.00 37.93 4.24
523 551 4.869861 GCAGGAAAAAGAAAAACTTCAGCA 59.130 37.500 0.00 0.00 37.93 4.41
524 552 4.869861 TGCAGGAAAAAGAAAAACTTCAGC 59.130 37.500 0.00 0.00 37.93 4.26
525 553 7.493645 AGAATGCAGGAAAAAGAAAAACTTCAG 59.506 33.333 0.00 0.00 37.93 3.02
526 554 7.278424 CAGAATGCAGGAAAAAGAAAAACTTCA 59.722 33.333 0.00 0.00 37.93 3.02
527 555 7.492344 TCAGAATGCAGGAAAAAGAAAAACTTC 59.508 33.333 0.00 0.00 34.87 3.01
528 556 7.330262 TCAGAATGCAGGAAAAAGAAAAACTT 58.670 30.769 0.00 0.00 36.74 2.66
529 557 6.877236 TCAGAATGCAGGAAAAAGAAAAACT 58.123 32.000 0.00 0.00 34.76 2.66
530 558 7.439056 TCATCAGAATGCAGGAAAAAGAAAAAC 59.561 33.333 0.00 0.00 34.76 2.43
531 559 7.499292 TCATCAGAATGCAGGAAAAAGAAAAA 58.501 30.769 0.00 0.00 34.76 1.94
532 560 7.053316 TCATCAGAATGCAGGAAAAAGAAAA 57.947 32.000 0.00 0.00 34.76 2.29
533 561 6.653526 TCATCAGAATGCAGGAAAAAGAAA 57.346 33.333 0.00 0.00 34.76 2.52
534 562 6.845758 ATCATCAGAATGCAGGAAAAAGAA 57.154 33.333 0.00 0.00 34.76 2.52
535 563 6.845758 AATCATCAGAATGCAGGAAAAAGA 57.154 33.333 0.00 0.00 34.76 2.52
536 564 7.900782 AAAATCATCAGAATGCAGGAAAAAG 57.099 32.000 0.00 0.00 34.76 2.27
576 604 2.159128 TGCACAAAACTCACCAACCATG 60.159 45.455 0.00 0.00 0.00 3.66
577 605 2.106566 TGCACAAAACTCACCAACCAT 58.893 42.857 0.00 0.00 0.00 3.55
578 606 1.550327 TGCACAAAACTCACCAACCA 58.450 45.000 0.00 0.00 0.00 3.67
579 607 2.663826 TTGCACAAAACTCACCAACC 57.336 45.000 0.00 0.00 0.00 3.77
580 608 2.788786 CGATTGCACAAAACTCACCAAC 59.211 45.455 0.00 0.00 0.00 3.77
581 609 2.797792 GCGATTGCACAAAACTCACCAA 60.798 45.455 0.00 0.00 42.15 3.67
582 610 1.268999 GCGATTGCACAAAACTCACCA 60.269 47.619 0.00 0.00 42.15 4.17
583 611 1.001378 AGCGATTGCACAAAACTCACC 60.001 47.619 7.90 0.00 46.23 4.02
584 612 2.405892 AGCGATTGCACAAAACTCAC 57.594 45.000 7.90 0.00 46.23 3.51
585 613 2.225491 GGTAGCGATTGCACAAAACTCA 59.775 45.455 7.90 0.00 46.23 3.41
586 614 2.484264 AGGTAGCGATTGCACAAAACTC 59.516 45.455 7.90 0.00 46.23 3.01
587 615 2.504367 AGGTAGCGATTGCACAAAACT 58.496 42.857 7.90 0.00 46.23 2.66
588 616 2.979813 CAAGGTAGCGATTGCACAAAAC 59.020 45.455 7.90 0.00 46.23 2.43
589 617 2.621055 ACAAGGTAGCGATTGCACAAAA 59.379 40.909 7.90 0.00 46.23 2.44
590 618 2.031245 CACAAGGTAGCGATTGCACAAA 60.031 45.455 7.90 0.00 46.23 2.83
591 619 1.535028 CACAAGGTAGCGATTGCACAA 59.465 47.619 7.90 0.00 46.23 3.33
592 620 1.155889 CACAAGGTAGCGATTGCACA 58.844 50.000 7.90 0.00 46.23 4.57
593 621 1.394917 CTCACAAGGTAGCGATTGCAC 59.605 52.381 7.90 3.46 46.23 4.57
594 622 1.675714 CCTCACAAGGTAGCGATTGCA 60.676 52.381 7.90 0.00 39.92 4.08
595 623 1.009829 CCTCACAAGGTAGCGATTGC 58.990 55.000 0.00 0.00 37.94 3.56
596 624 1.656652 CCCTCACAAGGTAGCGATTG 58.343 55.000 0.00 0.00 41.59 2.67
597 625 0.107654 GCCCTCACAAGGTAGCGATT 60.108 55.000 0.00 0.00 41.59 3.34
598 626 1.522569 GCCCTCACAAGGTAGCGAT 59.477 57.895 0.00 0.00 41.59 4.58
599 627 2.978824 GCCCTCACAAGGTAGCGA 59.021 61.111 0.00 0.00 41.59 4.93
600 628 2.509336 CGCCCTCACAAGGTAGCG 60.509 66.667 1.68 1.68 43.64 4.26
601 629 1.448013 GACGCCCTCACAAGGTAGC 60.448 63.158 0.00 0.00 41.59 3.58
602 630 0.108615 CTGACGCCCTCACAAGGTAG 60.109 60.000 0.00 0.00 41.59 3.18
603 631 1.972198 CTGACGCCCTCACAAGGTA 59.028 57.895 0.00 0.00 41.59 3.08
604 632 2.743718 CTGACGCCCTCACAAGGT 59.256 61.111 0.00 0.00 41.59 3.50
605 633 2.743928 GCTGACGCCCTCACAAGG 60.744 66.667 0.00 0.00 42.95 3.61
623 651 2.605366 GGCAAGTTGCGAGAGAATCTAC 59.395 50.000 21.11 0.00 45.41 2.59
633 661 1.514678 AAAGCATCGGCAAGTTGCGA 61.515 50.000 21.11 20.21 46.21 5.10
639 667 2.053627 GTTTCACAAAGCATCGGCAAG 58.946 47.619 0.00 0.00 44.61 4.01
645 673 1.340889 TGCCCTGTTTCACAAAGCATC 59.659 47.619 0.00 0.00 33.11 3.91
646 674 1.342174 CTGCCCTGTTTCACAAAGCAT 59.658 47.619 2.04 0.00 36.18 3.79
647 675 0.746063 CTGCCCTGTTTCACAAAGCA 59.254 50.000 0.00 1.75 34.90 3.91
648 676 0.032540 CCTGCCCTGTTTCACAAAGC 59.967 55.000 0.00 0.00 0.00 3.51
649 677 1.691196 TCCTGCCCTGTTTCACAAAG 58.309 50.000 0.00 0.00 0.00 2.77
650 678 2.380064 ATCCTGCCCTGTTTCACAAA 57.620 45.000 0.00 0.00 0.00 2.83
651 679 3.737559 ATATCCTGCCCTGTTTCACAA 57.262 42.857 0.00 0.00 0.00 3.33
652 680 3.245229 ACAATATCCTGCCCTGTTTCACA 60.245 43.478 0.00 0.00 0.00 3.58
653 681 3.356290 ACAATATCCTGCCCTGTTTCAC 58.644 45.455 0.00 0.00 0.00 3.18
654 682 3.266772 AGACAATATCCTGCCCTGTTTCA 59.733 43.478 0.00 0.00 0.00 2.69
655 683 3.891049 AGACAATATCCTGCCCTGTTTC 58.109 45.455 0.00 0.00 0.00 2.78
656 684 4.322057 AAGACAATATCCTGCCCTGTTT 57.678 40.909 0.00 0.00 0.00 2.83
657 685 4.322057 AAAGACAATATCCTGCCCTGTT 57.678 40.909 0.00 0.00 0.00 3.16
658 686 4.019174 CAAAAGACAATATCCTGCCCTGT 58.981 43.478 0.00 0.00 0.00 4.00
659 687 3.181483 GCAAAAGACAATATCCTGCCCTG 60.181 47.826 0.00 0.00 0.00 4.45
660 688 3.026694 GCAAAAGACAATATCCTGCCCT 58.973 45.455 0.00 0.00 0.00 5.19
661 689 3.026694 AGCAAAAGACAATATCCTGCCC 58.973 45.455 0.00 0.00 31.33 5.36
662 690 4.725790 AAGCAAAAGACAATATCCTGCC 57.274 40.909 0.00 0.00 31.33 4.85
663 691 4.328169 GCAAAGCAAAAGACAATATCCTGC 59.672 41.667 0.00 0.00 0.00 4.85
664 692 5.346822 GTGCAAAGCAAAAGACAATATCCTG 59.653 40.000 0.00 0.00 41.47 3.86
665 693 5.010922 TGTGCAAAGCAAAAGACAATATCCT 59.989 36.000 0.00 0.00 41.47 3.24
666 694 5.229423 TGTGCAAAGCAAAAGACAATATCC 58.771 37.500 0.00 0.00 41.47 2.59
667 695 6.956299 ATGTGCAAAGCAAAAGACAATATC 57.044 33.333 0.00 0.00 41.47 1.63
668 696 7.733402 AAATGTGCAAAGCAAAAGACAATAT 57.267 28.000 0.00 0.00 41.47 1.28
669 697 7.551035 AAAATGTGCAAAGCAAAAGACAATA 57.449 28.000 0.00 0.00 41.47 1.90
670 698 6.439675 AAAATGTGCAAAGCAAAAGACAAT 57.560 29.167 0.00 0.00 41.47 2.71
671 699 5.876612 AAAATGTGCAAAGCAAAAGACAA 57.123 30.435 0.00 0.00 41.47 3.18
672 700 5.410746 TGAAAAATGTGCAAAGCAAAAGACA 59.589 32.000 0.00 0.00 41.47 3.41
673 701 5.867166 TGAAAAATGTGCAAAGCAAAAGAC 58.133 33.333 0.00 0.00 41.47 3.01
674 702 6.492007 TTGAAAAATGTGCAAAGCAAAAGA 57.508 29.167 0.00 0.00 41.47 2.52
675 703 7.564044 TTTTGAAAAATGTGCAAAGCAAAAG 57.436 28.000 0.00 0.00 41.47 2.27
676 704 8.530269 AATTTTGAAAAATGTGCAAAGCAAAA 57.470 23.077 0.00 0.00 37.71 2.44
677 705 8.530269 AAATTTTGAAAAATGTGCAAAGCAAA 57.470 23.077 1.91 0.00 37.71 3.68
678 706 7.811236 TGAAATTTTGAAAAATGTGCAAAGCAA 59.189 25.926 1.91 0.00 37.71 3.91
679 707 7.310664 TGAAATTTTGAAAAATGTGCAAAGCA 58.689 26.923 1.91 0.00 38.53 3.91
680 708 7.737525 TGAAATTTTGAAAAATGTGCAAAGC 57.262 28.000 1.91 0.00 38.53 3.51
710 738 7.228906 TCGGTGGTATAATTTTCAAGTCACAAA 59.771 33.333 0.00 0.00 0.00 2.83
714 742 7.747155 TTTCGGTGGTATAATTTTCAAGTCA 57.253 32.000 0.00 0.00 0.00 3.41
720 748 9.687210 AAAGAAGTTTTCGGTGGTATAATTTTC 57.313 29.630 0.00 0.00 34.02 2.29
722 750 9.687210 GAAAAGAAGTTTTCGGTGGTATAATTT 57.313 29.630 0.00 0.00 41.61 1.82
738 766 9.410556 CCGTTGAATTCATATTGAAAAGAAGTT 57.589 29.630 9.40 0.00 40.12 2.66
739 767 8.576442 ACCGTTGAATTCATATTGAAAAGAAGT 58.424 29.630 9.40 0.00 40.12 3.01
740 768 8.970691 ACCGTTGAATTCATATTGAAAAGAAG 57.029 30.769 9.40 0.00 40.12 2.85
742 770 9.443323 TCTACCGTTGAATTCATATTGAAAAGA 57.557 29.630 9.40 3.08 40.12 2.52
755 783 7.920682 GCCAAATATGAATTCTACCGTTGAATT 59.079 33.333 17.38 17.38 44.01 2.17
756 784 7.285401 AGCCAAATATGAATTCTACCGTTGAAT 59.715 33.333 7.05 2.76 35.88 2.57
757 785 6.601613 AGCCAAATATGAATTCTACCGTTGAA 59.398 34.615 7.05 0.00 0.00 2.69
758 786 6.038161 CAGCCAAATATGAATTCTACCGTTGA 59.962 38.462 7.05 0.00 0.00 3.18
759 787 6.201517 CAGCCAAATATGAATTCTACCGTTG 58.798 40.000 7.05 5.04 0.00 4.10
760 788 5.299279 CCAGCCAAATATGAATTCTACCGTT 59.701 40.000 7.05 0.00 0.00 4.44
761 789 4.821805 CCAGCCAAATATGAATTCTACCGT 59.178 41.667 7.05 0.00 0.00 4.83
762 790 4.821805 ACCAGCCAAATATGAATTCTACCG 59.178 41.667 7.05 0.00 0.00 4.02
763 791 6.715347 AACCAGCCAAATATGAATTCTACC 57.285 37.500 7.05 0.00 0.00 3.18
764 792 8.903820 ACTAAACCAGCCAAATATGAATTCTAC 58.096 33.333 7.05 0.00 0.00 2.59
765 793 9.474313 AACTAAACCAGCCAAATATGAATTCTA 57.526 29.630 7.05 0.00 0.00 2.10
766 794 7.961326 ACTAAACCAGCCAAATATGAATTCT 57.039 32.000 7.05 0.00 0.00 2.40
770 798 8.474025 CCATAAACTAAACCAGCCAAATATGAA 58.526 33.333 0.00 0.00 0.00 2.57
771 799 7.617723 ACCATAAACTAAACCAGCCAAATATGA 59.382 33.333 0.00 0.00 0.00 2.15
772 800 7.781056 ACCATAAACTAAACCAGCCAAATATG 58.219 34.615 0.00 0.00 0.00 1.78
773 801 7.617723 TGACCATAAACTAAACCAGCCAAATAT 59.382 33.333 0.00 0.00 0.00 1.28
774 802 6.948886 TGACCATAAACTAAACCAGCCAAATA 59.051 34.615 0.00 0.00 0.00 1.40
775 803 5.777732 TGACCATAAACTAAACCAGCCAAAT 59.222 36.000 0.00 0.00 0.00 2.32
776 804 5.141182 TGACCATAAACTAAACCAGCCAAA 58.859 37.500 0.00 0.00 0.00 3.28
777 805 4.730966 TGACCATAAACTAAACCAGCCAA 58.269 39.130 0.00 0.00 0.00 4.52
778 806 4.374689 TGACCATAAACTAAACCAGCCA 57.625 40.909 0.00 0.00 0.00 4.75
779 807 5.715434 TTTGACCATAAACTAAACCAGCC 57.285 39.130 0.00 0.00 0.00 4.85
780 808 8.495148 CAAAATTTGACCATAAACTAAACCAGC 58.505 33.333 0.00 0.00 0.00 4.85
781 809 8.987890 CCAAAATTTGACCATAAACTAAACCAG 58.012 33.333 7.37 0.00 0.00 4.00
782 810 8.705594 TCCAAAATTTGACCATAAACTAAACCA 58.294 29.630 7.37 0.00 0.00 3.67
783 811 9.719355 ATCCAAAATTTGACCATAAACTAAACC 57.281 29.630 7.37 0.00 0.00 3.27
794 822 9.270640 CACATCTAAAAATCCAAAATTTGACCA 57.729 29.630 7.37 0.00 0.00 4.02
795 823 8.720562 CCACATCTAAAAATCCAAAATTTGACC 58.279 33.333 7.37 0.00 0.00 4.02
796 824 8.720562 CCCACATCTAAAAATCCAAAATTTGAC 58.279 33.333 7.37 0.00 0.00 3.18
797 825 7.390162 GCCCACATCTAAAAATCCAAAATTTGA 59.610 33.333 7.37 0.00 0.00 2.69
798 826 7.529158 GCCCACATCTAAAAATCCAAAATTTG 58.471 34.615 0.00 0.00 0.00 2.32
799 827 6.371271 CGCCCACATCTAAAAATCCAAAATTT 59.629 34.615 0.00 0.00 0.00 1.82
800 828 5.874261 CGCCCACATCTAAAAATCCAAAATT 59.126 36.000 0.00 0.00 0.00 1.82
801 829 5.186797 TCGCCCACATCTAAAAATCCAAAAT 59.813 36.000 0.00 0.00 0.00 1.82
802 830 4.524714 TCGCCCACATCTAAAAATCCAAAA 59.475 37.500 0.00 0.00 0.00 2.44
803 831 4.082463 GTCGCCCACATCTAAAAATCCAAA 60.082 41.667 0.00 0.00 0.00 3.28
804 832 3.442273 GTCGCCCACATCTAAAAATCCAA 59.558 43.478 0.00 0.00 0.00 3.53
805 833 3.013921 GTCGCCCACATCTAAAAATCCA 58.986 45.455 0.00 0.00 0.00 3.41
806 834 2.031683 CGTCGCCCACATCTAAAAATCC 59.968 50.000 0.00 0.00 0.00 3.01
807 835 2.676342 ACGTCGCCCACATCTAAAAATC 59.324 45.455 0.00 0.00 0.00 2.17
808 836 2.676342 GACGTCGCCCACATCTAAAAAT 59.324 45.455 0.00 0.00 0.00 1.82
809 837 2.070783 GACGTCGCCCACATCTAAAAA 58.929 47.619 0.00 0.00 0.00 1.94
810 838 1.274167 AGACGTCGCCCACATCTAAAA 59.726 47.619 10.46 0.00 0.00 1.52
811 839 0.892755 AGACGTCGCCCACATCTAAA 59.107 50.000 10.46 0.00 0.00 1.85
812 840 0.454600 GAGACGTCGCCCACATCTAA 59.545 55.000 10.46 0.00 0.00 2.10
813 841 1.712018 CGAGACGTCGCCCACATCTA 61.712 60.000 13.90 0.00 39.88 1.98
814 842 2.885861 GAGACGTCGCCCACATCT 59.114 61.111 10.46 0.00 0.00 2.90
815 843 2.579787 CGAGACGTCGCCCACATC 60.580 66.667 13.90 1.19 39.88 3.06
816 844 4.129737 CCGAGACGTCGCCCACAT 62.130 66.667 13.90 0.00 45.41 3.21
818 846 3.434319 TACCGAGACGTCGCCCAC 61.434 66.667 13.90 2.22 45.41 4.61
819 847 3.434319 GTACCGAGACGTCGCCCA 61.434 66.667 13.90 0.00 45.41 5.36
820 848 4.185059 GGTACCGAGACGTCGCCC 62.185 72.222 13.90 5.17 45.41 6.13
821 849 2.205243 AAAGGTACCGAGACGTCGCC 62.205 60.000 13.90 7.29 45.41 5.54
822 850 0.387750 AAAAGGTACCGAGACGTCGC 60.388 55.000 10.46 9.96 45.41 5.19
823 851 1.334054 CAAAAGGTACCGAGACGTCG 58.666 55.000 10.46 0.00 46.39 5.12
824 852 2.030451 AGACAAAAGGTACCGAGACGTC 60.030 50.000 7.70 7.70 0.00 4.34
825 853 1.959282 AGACAAAAGGTACCGAGACGT 59.041 47.619 6.18 1.32 0.00 4.34
826 854 2.719426 AGACAAAAGGTACCGAGACG 57.281 50.000 6.18 0.00 0.00 4.18
827 855 4.025145 CACAAAGACAAAAGGTACCGAGAC 60.025 45.833 6.18 0.00 0.00 3.36
828 856 4.124238 CACAAAGACAAAAGGTACCGAGA 58.876 43.478 6.18 0.00 0.00 4.04
829 857 3.250040 CCACAAAGACAAAAGGTACCGAG 59.750 47.826 6.18 0.20 0.00 4.63
830 858 3.207778 CCACAAAGACAAAAGGTACCGA 58.792 45.455 6.18 0.00 0.00 4.69
831 859 2.287368 GCCACAAAGACAAAAGGTACCG 60.287 50.000 6.18 0.00 0.00 4.02
832 860 2.691011 TGCCACAAAGACAAAAGGTACC 59.309 45.455 2.73 2.73 0.00 3.34
833 861 4.278419 AGATGCCACAAAGACAAAAGGTAC 59.722 41.667 0.00 0.00 0.00 3.34
834 862 4.469657 AGATGCCACAAAGACAAAAGGTA 58.530 39.130 0.00 0.00 0.00 3.08
835 863 3.299503 AGATGCCACAAAGACAAAAGGT 58.700 40.909 0.00 0.00 0.00 3.50
836 864 4.616835 GCTAGATGCCACAAAGACAAAAGG 60.617 45.833 0.00 0.00 35.15 3.11
841 869 2.302733 TCTGCTAGATGCCACAAAGACA 59.697 45.455 0.00 0.00 42.00 3.41
849 877 0.107993 GCACACTCTGCTAGATGCCA 60.108 55.000 0.00 0.00 43.33 4.92
871 915 3.902112 ACCTTGGTGGCCCAGTGG 61.902 66.667 0.63 0.63 43.15 4.00
898 968 4.814294 GCTACGTGGTGGAGGGCG 62.814 72.222 0.00 0.00 0.00 6.13
899 969 3.702048 TGCTACGTGGTGGAGGGC 61.702 66.667 0.00 0.00 0.00 5.19
900 970 2.264794 GTGCTACGTGGTGGAGGG 59.735 66.667 0.00 0.00 0.00 4.30
901 971 2.264794 GGTGCTACGTGGTGGAGG 59.735 66.667 0.00 0.00 0.00 4.30
902 972 2.264794 GGGTGCTACGTGGTGGAG 59.735 66.667 0.00 0.00 0.00 3.86
952 1022 1.333636 CGCTGAATGGGAGAGGTCCT 61.334 60.000 0.00 0.00 43.36 3.85
953 1023 1.144936 CGCTGAATGGGAGAGGTCC 59.855 63.158 0.00 0.00 43.05 4.46
954 1024 1.522580 GCGCTGAATGGGAGAGGTC 60.523 63.158 0.00 0.00 0.00 3.85
955 1025 2.586792 GCGCTGAATGGGAGAGGT 59.413 61.111 0.00 0.00 0.00 3.85
1047 1134 2.125188 GGGTGAGCTGAGCTGAGC 60.125 66.667 18.32 18.32 39.88 4.26
1053 1140 3.368190 CTGCGAGGGGTGAGCTGAG 62.368 68.421 0.00 0.00 32.67 3.35
1162 1249 3.818787 CGGCTTGAGCATGCCCAC 61.819 66.667 15.66 7.14 45.71 4.61
1506 1593 0.314302 CGACGGGGATGATGTACCTC 59.686 60.000 0.00 0.00 0.00 3.85
1507 1594 1.745320 GCGACGGGGATGATGTACCT 61.745 60.000 0.00 0.00 0.00 3.08
1509 1596 1.300697 GGCGACGGGGATGATGTAC 60.301 63.158 0.00 0.00 0.00 2.90
1640 1730 1.665679 CGCAAAGTGAATCGGCATACT 59.334 47.619 0.00 0.00 0.00 2.12
1670 1906 6.374333 AGTTATTAACAATGCAAGATGACGGT 59.626 34.615 9.15 0.00 0.00 4.83
1734 1991 0.534877 AATGCACACACCTTCGCAGA 60.535 50.000 0.00 0.00 37.88 4.26
1736 1993 0.534877 AGAATGCACACACCTTCGCA 60.535 50.000 0.00 0.00 39.01 5.10
1737 1994 0.593128 AAGAATGCACACACCTTCGC 59.407 50.000 0.00 0.00 0.00 4.70
1738 1995 2.549754 AGAAAGAATGCACACACCTTCG 59.450 45.455 0.00 0.00 0.00 3.79
1739 1996 4.574599 AAGAAAGAATGCACACACCTTC 57.425 40.909 0.00 0.00 0.00 3.46
1773 2050 1.481772 TCGTGCAGACCATGATCATCA 59.518 47.619 4.86 0.00 34.59 3.07
1774 2051 1.863454 GTCGTGCAGACCATGATCATC 59.137 52.381 4.86 0.00 43.95 2.92
1796 2073 1.766069 AATGTCGAAAAAGGTTGCGC 58.234 45.000 0.00 0.00 35.57 6.09
1871 2155 5.478332 ACCTGGAGTCCATTTTTCTGAATTC 59.522 40.000 13.56 0.00 30.82 2.17
1880 2164 1.882352 GCGTCACCTGGAGTCCATTTT 60.882 52.381 13.56 0.00 30.82 1.82
1881 2165 0.321653 GCGTCACCTGGAGTCCATTT 60.322 55.000 13.56 0.00 30.82 2.32
1885 2169 1.079750 GAAGCGTCACCTGGAGTCC 60.080 63.158 0.73 0.73 0.00 3.85
1906 2190 4.885907 ACCTGCGATGAAATGATCAGAAAT 59.114 37.500 0.09 0.00 42.53 2.17
2020 2304 1.885388 CACCGTCTTGGCGTTGTCA 60.885 57.895 0.00 0.00 43.94 3.58
2256 2541 1.157870 ACACAGAAAACGGAGCGGTG 61.158 55.000 0.00 0.00 34.60 4.94
2264 2549 3.428534 TCATCGTCATCACACAGAAAACG 59.571 43.478 0.00 0.00 38.70 3.60
2294 2582 5.994668 ACTTTGAGGTGCAGAAAAACAAAAA 59.005 32.000 0.00 0.00 0.00 1.94
2349 2637 3.483574 CCAGAATTGACGGACGAAATTCG 60.484 47.826 14.35 14.35 46.93 3.34
2388 2676 7.016153 ACTTAATCCCCGCTCATATGATTAA 57.984 36.000 5.72 5.69 36.23 1.40
2389 2677 6.212589 TGACTTAATCCCCGCTCATATGATTA 59.787 38.462 5.72 0.00 0.00 1.75
2390 2678 5.013079 TGACTTAATCCCCGCTCATATGATT 59.987 40.000 5.72 0.00 0.00 2.57
2391 2679 4.532126 TGACTTAATCCCCGCTCATATGAT 59.468 41.667 5.72 0.00 0.00 2.45
2394 2682 3.261897 CCTGACTTAATCCCCGCTCATAT 59.738 47.826 0.00 0.00 0.00 1.78
2395 2683 2.632996 CCTGACTTAATCCCCGCTCATA 59.367 50.000 0.00 0.00 0.00 2.15
2396 2684 1.417890 CCTGACTTAATCCCCGCTCAT 59.582 52.381 0.00 0.00 0.00 2.90
2397 2685 0.830648 CCTGACTTAATCCCCGCTCA 59.169 55.000 0.00 0.00 0.00 4.26
2401 2722 1.209621 TTCCCCTGACTTAATCCCCG 58.790 55.000 0.00 0.00 0.00 5.73
2412 2733 2.625790 CGGTTTCAAAACATTCCCCTGA 59.374 45.455 7.82 0.00 40.63 3.86
2413 2734 2.625790 TCGGTTTCAAAACATTCCCCTG 59.374 45.455 7.82 0.00 40.63 4.45
2414 2735 2.952116 TCGGTTTCAAAACATTCCCCT 58.048 42.857 7.82 0.00 40.63 4.79
2415 2736 3.953712 ATCGGTTTCAAAACATTCCCC 57.046 42.857 7.82 0.00 40.63 4.81
2416 2737 4.877282 TCAATCGGTTTCAAAACATTCCC 58.123 39.130 7.82 0.00 40.63 3.97
2417 2738 8.702163 ATATTCAATCGGTTTCAAAACATTCC 57.298 30.769 7.82 0.00 40.63 3.01
2419 2740 8.934825 CCAATATTCAATCGGTTTCAAAACATT 58.065 29.630 7.82 0.00 40.63 2.71
2421 2742 7.437748 ACCAATATTCAATCGGTTTCAAAACA 58.562 30.769 7.82 0.00 40.63 2.83
2423 2744 7.812191 CAGACCAATATTCAATCGGTTTCAAAA 59.188 33.333 0.00 0.00 0.00 2.44
2425 2746 6.127758 CCAGACCAATATTCAATCGGTTTCAA 60.128 38.462 0.00 0.00 0.00 2.69
2426 2747 5.356751 CCAGACCAATATTCAATCGGTTTCA 59.643 40.000 0.00 0.00 0.00 2.69
2427 2748 5.221048 CCCAGACCAATATTCAATCGGTTTC 60.221 44.000 0.00 0.00 0.00 2.78
2428 2749 4.644685 CCCAGACCAATATTCAATCGGTTT 59.355 41.667 0.00 0.00 0.00 3.27
2429 2750 4.207165 CCCAGACCAATATTCAATCGGTT 58.793 43.478 0.00 0.00 0.00 4.44
2430 2751 3.202151 ACCCAGACCAATATTCAATCGGT 59.798 43.478 0.00 0.00 0.00 4.69
2431 2752 3.820557 ACCCAGACCAATATTCAATCGG 58.179 45.455 0.00 0.00 0.00 4.18
2433 2754 8.360390 GGAAAATACCCAGACCAATATTCAATC 58.640 37.037 0.00 0.00 0.00 2.67
2435 2756 7.123547 GTGGAAAATACCCAGACCAATATTCAA 59.876 37.037 0.00 0.00 33.75 2.69
2437 2758 6.040504 GGTGGAAAATACCCAGACCAATATTC 59.959 42.308 0.00 0.00 33.75 1.75
2438 2759 5.897250 GGTGGAAAATACCCAGACCAATATT 59.103 40.000 0.00 0.00 33.75 1.28
2439 2760 5.454966 GGTGGAAAATACCCAGACCAATAT 58.545 41.667 0.00 0.00 33.75 1.28
2440 2761 4.626771 CGGTGGAAAATACCCAGACCAATA 60.627 45.833 0.00 0.00 34.66 1.90
2442 2763 2.553466 CGGTGGAAAATACCCAGACCAA 60.553 50.000 0.00 0.00 34.66 3.67
2446 2767 2.027561 CACTCGGTGGAAAATACCCAGA 60.028 50.000 0.00 0.00 34.66 3.86
2450 2771 4.573607 GGTATTCACTCGGTGGAAAATACC 59.426 45.833 18.91 18.91 40.36 2.73
2451 2772 4.573607 GGGTATTCACTCGGTGGAAAATAC 59.426 45.833 13.06 13.06 33.70 1.89
2452 2773 4.225492 TGGGTATTCACTCGGTGGAAAATA 59.775 41.667 4.52 0.43 33.87 1.40
2454 2775 2.372504 TGGGTATTCACTCGGTGGAAAA 59.627 45.455 4.52 0.00 33.87 2.29
2461 2782 1.191535 TGAGGTGGGTATTCACTCGG 58.808 55.000 0.00 0.00 37.75 4.63
2467 2788 3.890147 ACTAGTCGATGAGGTGGGTATTC 59.110 47.826 0.00 0.00 0.00 1.75
2468 2789 3.637229 CACTAGTCGATGAGGTGGGTATT 59.363 47.826 0.00 0.00 0.00 1.89
2469 2790 3.223435 CACTAGTCGATGAGGTGGGTAT 58.777 50.000 0.00 0.00 0.00 2.73
2470 2791 2.651455 CACTAGTCGATGAGGTGGGTA 58.349 52.381 0.00 0.00 0.00 3.69
2471 2792 1.475403 CACTAGTCGATGAGGTGGGT 58.525 55.000 0.00 0.00 0.00 4.51
2472 2793 0.103208 GCACTAGTCGATGAGGTGGG 59.897 60.000 0.00 0.00 0.00 4.61
2474 2795 0.103208 GGGCACTAGTCGATGAGGTG 59.897 60.000 0.00 0.00 0.00 4.00
2475 2796 0.324368 TGGGCACTAGTCGATGAGGT 60.324 55.000 0.00 0.00 0.00 3.85
2477 2798 0.387202 CCTGGGCACTAGTCGATGAG 59.613 60.000 0.00 0.00 34.02 2.90
2479 2800 0.824109 TTCCTGGGCACTAGTCGATG 59.176 55.000 0.00 0.00 34.02 3.84
2480 2801 1.568504 TTTCCTGGGCACTAGTCGAT 58.431 50.000 0.00 0.00 34.02 3.59
2481 2802 1.344065 TTTTCCTGGGCACTAGTCGA 58.656 50.000 0.00 0.00 34.02 4.20
2483 2804 3.440522 GTCATTTTTCCTGGGCACTAGTC 59.559 47.826 0.00 0.00 34.02 2.59
2484 2805 3.074538 AGTCATTTTTCCTGGGCACTAGT 59.925 43.478 0.00 0.00 34.02 2.57
2485 2806 3.690460 AGTCATTTTTCCTGGGCACTAG 58.310 45.455 0.00 0.00 36.38 2.57
2486 2807 3.806949 AGTCATTTTTCCTGGGCACTA 57.193 42.857 0.00 0.00 0.00 2.74
2489 2810 3.420893 CACTAGTCATTTTTCCTGGGCA 58.579 45.455 0.00 0.00 0.00 5.36
2490 2811 2.164422 GCACTAGTCATTTTTCCTGGGC 59.836 50.000 0.00 0.00 0.00 5.36
2491 2812 2.420022 CGCACTAGTCATTTTTCCTGGG 59.580 50.000 0.00 0.00 0.00 4.45
2492 2813 3.074412 ACGCACTAGTCATTTTTCCTGG 58.926 45.455 0.00 0.00 0.00 4.45
2493 2814 3.997021 AGACGCACTAGTCATTTTTCCTG 59.003 43.478 0.00 0.00 43.24 3.86
2496 2817 6.323266 TCTCTAGACGCACTAGTCATTTTTC 58.677 40.000 14.11 0.00 46.15 2.29
2497 2818 6.268825 TCTCTAGACGCACTAGTCATTTTT 57.731 37.500 14.11 0.00 46.15 1.94
2498 2819 5.899120 TCTCTAGACGCACTAGTCATTTT 57.101 39.130 14.11 0.00 46.15 1.82
2499 2820 5.590663 TGATCTCTAGACGCACTAGTCATTT 59.409 40.000 14.11 1.37 46.15 2.32
2500 2821 5.126779 TGATCTCTAGACGCACTAGTCATT 58.873 41.667 14.11 2.65 46.15 2.57
2501 2822 4.709250 TGATCTCTAGACGCACTAGTCAT 58.291 43.478 14.11 9.02 46.15 3.06
2502 2823 4.138487 TGATCTCTAGACGCACTAGTCA 57.862 45.455 14.11 9.59 46.15 3.41
2503 2824 6.978343 ATATGATCTCTAGACGCACTAGTC 57.022 41.667 14.11 7.74 46.15 2.59
2504 2825 6.712998 ACAATATGATCTCTAGACGCACTAGT 59.287 38.462 14.11 0.00 46.15 2.57
2506 2827 7.445707 AGAACAATATGATCTCTAGACGCACTA 59.554 37.037 0.00 0.00 0.00 2.74
2524 2845 8.842280 AGTTTTACAATCGGTTTCAGAACAATA 58.158 29.630 0.00 0.00 37.51 1.90
2525 2846 7.647715 CAGTTTTACAATCGGTTTCAGAACAAT 59.352 33.333 0.00 0.00 37.51 2.71
2526 2847 6.970043 CAGTTTTACAATCGGTTTCAGAACAA 59.030 34.615 0.00 0.00 37.51 2.83
2529 2851 5.298276 AGCAGTTTTACAATCGGTTTCAGAA 59.702 36.000 0.00 0.00 0.00 3.02
2547 2869 3.535561 ACGCTAATCTTGCATAGCAGTT 58.464 40.909 15.40 0.00 43.71 3.16
2550 2872 3.557185 CAGAACGCTAATCTTGCATAGCA 59.443 43.478 15.40 0.00 43.71 3.49
2554 2876 4.455533 TGTTTCAGAACGCTAATCTTGCAT 59.544 37.500 0.00 0.00 38.65 3.96
2565 2887 2.405892 AGCAATGTGTTTCAGAACGC 57.594 45.000 0.00 0.00 44.56 4.84
2568 2890 6.262944 ACATTCTGTAGCAATGTGTTTCAGAA 59.737 34.615 13.55 13.55 41.86 3.02
2572 2894 5.117592 GCAACATTCTGTAGCAATGTGTTTC 59.882 40.000 0.58 0.00 42.47 2.78
2579 2901 3.940852 TCGATGCAACATTCTGTAGCAAT 59.059 39.130 0.00 0.00 38.85 3.56
2580 2902 3.333804 TCGATGCAACATTCTGTAGCAA 58.666 40.909 0.00 0.00 38.85 3.91
2581 2903 2.971307 TCGATGCAACATTCTGTAGCA 58.029 42.857 0.00 0.00 39.79 3.49
2582 2904 3.125146 TGTTCGATGCAACATTCTGTAGC 59.875 43.478 0.00 0.00 31.08 3.58
2583 2905 4.726021 GCTGTTCGATGCAACATTCTGTAG 60.726 45.833 0.00 0.00 35.70 2.74
2584 2906 3.125146 GCTGTTCGATGCAACATTCTGTA 59.875 43.478 0.00 0.00 35.70 2.74
2585 2907 2.095567 GCTGTTCGATGCAACATTCTGT 60.096 45.455 0.00 0.00 35.70 3.41
2586 2908 2.161012 AGCTGTTCGATGCAACATTCTG 59.839 45.455 0.00 0.00 35.70 3.02
2587 2909 2.430465 AGCTGTTCGATGCAACATTCT 58.570 42.857 0.00 0.00 35.70 2.40
2588 2910 2.907910 AGCTGTTCGATGCAACATTC 57.092 45.000 0.00 0.00 35.70 2.67
2594 2916 2.029020 ACAGACTTAGCTGTTCGATGCA 60.029 45.455 0.00 0.00 46.42 3.96
2630 2952 6.166982 AGAGCATCCTGTTACAAACTTAGTC 58.833 40.000 0.00 0.00 33.66 2.59
2632 2954 7.097192 TGTAGAGCATCCTGTTACAAACTTAG 58.903 38.462 0.00 0.00 33.66 2.18
2633 2955 6.999950 TGTAGAGCATCCTGTTACAAACTTA 58.000 36.000 0.00 0.00 33.66 2.24
2647 2969 6.457528 GCACCTAATCAACTTTGTAGAGCATC 60.458 42.308 0.00 0.00 0.00 3.91
2648 2970 5.355350 GCACCTAATCAACTTTGTAGAGCAT 59.645 40.000 0.00 0.00 0.00 3.79
2649 2971 4.695455 GCACCTAATCAACTTTGTAGAGCA 59.305 41.667 0.00 0.00 0.00 4.26
2656 2978 9.507280 CAATAGTAATGCACCTAATCAACTTTG 57.493 33.333 0.00 0.00 0.00 2.77
2659 2981 7.056635 AGCAATAGTAATGCACCTAATCAACT 58.943 34.615 12.62 0.00 46.22 3.16
2664 2986 9.618890 CCATATAGCAATAGTAATGCACCTAAT 57.381 33.333 12.62 1.38 46.22 1.73
2666 2988 8.374184 TCCATATAGCAATAGTAATGCACCTA 57.626 34.615 12.62 1.76 46.22 3.08
2682 3004 5.947228 TGTAAAATGCTGCTCCATATAGC 57.053 39.130 0.00 0.00 43.08 2.97
2683 3005 9.188588 CATTTTGTAAAATGCTGCTCCATATAG 57.811 33.333 14.85 0.00 45.86 1.31
2698 3020 3.557595 CGGGCAAGCAACATTTTGTAAAA 59.442 39.130 0.00 0.00 34.90 1.52
2751 3073 1.090728 TCGTGTTTGCTTTGCTGTGA 58.909 45.000 0.00 0.00 0.00 3.58
2752 3074 1.191096 GTCGTGTTTGCTTTGCTGTG 58.809 50.000 0.00 0.00 0.00 3.66
2753 3075 0.808125 TGTCGTGTTTGCTTTGCTGT 59.192 45.000 0.00 0.00 0.00 4.40
2769 3138 5.504665 CGGCATCTTATTCTGAATTGGTGTC 60.505 44.000 8.38 9.04 0.00 3.67
2783 3152 2.216898 GCTCTTTCTGCGGCATCTTAT 58.783 47.619 1.75 0.00 0.00 1.73
2784 3153 1.066215 TGCTCTTTCTGCGGCATCTTA 60.066 47.619 1.75 0.00 0.00 2.10
2793 3164 3.618594 TCATATGTCGTTGCTCTTTCTGC 59.381 43.478 1.90 0.00 0.00 4.26
2800 3171 2.285256 CGCTGTTCATATGTCGTTGCTC 60.285 50.000 1.90 0.00 0.00 4.26
2802 3173 1.267532 CCGCTGTTCATATGTCGTTGC 60.268 52.381 1.90 2.13 0.00 4.17
2821 3192 2.939103 CTGTCTGGTGCTATGCTTTACC 59.061 50.000 0.00 0.00 0.00 2.85
2822 3193 3.861840 TCTGTCTGGTGCTATGCTTTAC 58.138 45.455 0.00 0.00 0.00 2.01
2823 3194 4.551702 TTCTGTCTGGTGCTATGCTTTA 57.448 40.909 0.00 0.00 0.00 1.85
2937 3319 3.605664 GTGGTGTGGTTGCTGCCC 61.606 66.667 0.00 0.00 0.00 5.36
2938 3320 2.832661 TGTGGTGTGGTTGCTGCC 60.833 61.111 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.