Multiple sequence alignment - TraesCS1D01G053700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G053700 chr1D 100.000 3108 0 0 1 3108 34942205 34945312 0.000000e+00 5740
1 TraesCS1D01G053700 chr1D 88.688 221 16 4 923 1139 211216081 211215866 8.550000e-66 261
2 TraesCS1D01G053700 chr1B 92.345 1450 59 18 923 2327 53247425 53248867 0.000000e+00 2015
3 TraesCS1D01G053700 chr1B 95.433 416 15 2 2694 3106 53249194 53249608 0.000000e+00 660
4 TraesCS1D01G053700 chr1A 90.199 755 38 14 1524 2267 33372451 33373180 0.000000e+00 952
5 TraesCS1D01G053700 chr1A 93.580 514 28 3 326 834 565236290 565236803 0.000000e+00 761
6 TraesCS1D01G053700 chr1A 95.923 417 12 3 2694 3106 33373485 33373900 0.000000e+00 671
7 TraesCS1D01G053700 chr1A 81.609 870 72 40 18 832 33370870 33371706 9.400000e-180 640
8 TraesCS1D01G053700 chr1A 88.847 529 48 7 913 1437 33371702 33372223 9.400000e-180 640
9 TraesCS1D01G053700 chr1A 93.902 246 12 1 2378 2623 416006215 416006457 4.900000e-98 368
10 TraesCS1D01G053700 chr1A 84.397 141 9 4 4 141 553558607 553558737 3.250000e-25 126
11 TraesCS1D01G053700 chr1A 83.688 141 10 4 4 141 553552089 553552219 1.510000e-23 121
12 TraesCS1D01G053700 chr1A 94.444 72 3 1 2321 2391 33373272 33373343 3.280000e-20 110
13 TraesCS1D01G053700 chr6A 93.580 514 28 3 326 834 596280439 596280952 0.000000e+00 761
14 TraesCS1D01G053700 chr6A 85.606 132 8 2 4 134 349556078 349556199 9.050000e-26 128
15 TraesCS1D01G053700 chr6A 85.606 132 8 2 4 134 596280305 596280426 9.050000e-26 128
16 TraesCS1D01G053700 chr3B 93.580 514 28 3 326 834 806385244 806384731 0.000000e+00 761
17 TraesCS1D01G053700 chr3B 93.010 515 30 4 326 834 220473275 220472761 0.000000e+00 747
18 TraesCS1D01G053700 chr3B 92.996 514 31 3 326 834 219134957 219134444 0.000000e+00 745
19 TraesCS1D01G053700 chr5B 93.385 514 29 3 326 834 253037774 253037261 0.000000e+00 756
20 TraesCS1D01G053700 chr5B 93.191 514 30 4 326 834 335977128 335976615 0.000000e+00 750
21 TraesCS1D01G053700 chr5B 92.607 514 33 3 326 834 557737576 557738089 0.000000e+00 734
22 TraesCS1D01G053700 chr5B 85.816 141 7 4 4 141 335977261 335977131 1.500000e-28 137
23 TraesCS1D01G053700 chr5B 85.106 141 8 4 4 141 656218156 656218286 6.990000e-27 132
24 TraesCS1D01G053700 chr5B 83.688 141 10 4 4 141 557737443 557737573 1.510000e-23 121
25 TraesCS1D01G053700 chr2B 92.982 513 31 3 327 834 545922502 545923014 0.000000e+00 743
26 TraesCS1D01G053700 chr2B 91.875 160 13 0 980 1139 216213419 216213578 1.120000e-54 224
27 TraesCS1D01G053700 chr5A 96.341 246 9 0 2378 2623 682649385 682649630 3.730000e-109 405
28 TraesCS1D01G053700 chr2A 95.935 246 10 0 2378 2623 756403208 756403453 1.740000e-107 399
29 TraesCS1D01G053700 chr2A 95.528 246 11 0 2378 2623 596700097 596700342 8.080000e-106 394
30 TraesCS1D01G053700 chr7A 95.122 246 12 0 2378 2623 662495413 662495168 3.760000e-104 388
31 TraesCS1D01G053700 chr7A 94.715 246 13 0 2378 2623 1029590 1029835 1.750000e-102 383
32 TraesCS1D01G053700 chr7D 88.235 221 17 4 923 1139 569720964 569720749 3.980000e-64 255
33 TraesCS1D01G053700 chr6B 89.552 201 15 4 939 1139 501361068 501360874 1.850000e-62 250
34 TraesCS1D01G053700 chr4D 87.615 218 18 4 926 1139 189518467 189518679 8.610000e-61 244
35 TraesCS1D01G053700 chr3A 95.349 86 4 0 2378 2463 567160090 567160175 1.500000e-28 137
36 TraesCS1D01G053700 chrUn 94.186 86 5 0 2378 2463 257610548 257610633 6.990000e-27 132
37 TraesCS1D01G053700 chrUn 94.186 86 5 0 2378 2463 367251510 367251595 6.990000e-27 132
38 TraesCS1D01G053700 chrUn 85.185 135 9 2 4 137 82479567 82479443 9.050000e-26 128
39 TraesCS1D01G053700 chr4B 85.106 141 8 4 4 141 592046851 592046981 6.990000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G053700 chr1D 34942205 34945312 3107 False 5740.0 5740 100.0000 1 3108 1 chr1D.!!$F1 3107
1 TraesCS1D01G053700 chr1B 53247425 53249608 2183 False 1337.5 2015 93.8890 923 3106 2 chr1B.!!$F1 2183
2 TraesCS1D01G053700 chr1A 565236290 565236803 513 False 761.0 761 93.5800 326 834 1 chr1A.!!$F4 508
3 TraesCS1D01G053700 chr1A 33370870 33373900 3030 False 602.6 952 90.2044 18 3106 5 chr1A.!!$F5 3088
4 TraesCS1D01G053700 chr6A 596280305 596280952 647 False 444.5 761 89.5930 4 834 2 chr6A.!!$F2 830
5 TraesCS1D01G053700 chr3B 806384731 806385244 513 True 761.0 761 93.5800 326 834 1 chr3B.!!$R3 508
6 TraesCS1D01G053700 chr3B 220472761 220473275 514 True 747.0 747 93.0100 326 834 1 chr3B.!!$R2 508
7 TraesCS1D01G053700 chr3B 219134444 219134957 513 True 745.0 745 92.9960 326 834 1 chr3B.!!$R1 508
8 TraesCS1D01G053700 chr5B 253037261 253037774 513 True 756.0 756 93.3850 326 834 1 chr5B.!!$R1 508
9 TraesCS1D01G053700 chr5B 335976615 335977261 646 True 443.5 750 89.5035 4 834 2 chr5B.!!$R2 830
10 TraesCS1D01G053700 chr5B 557737443 557738089 646 False 427.5 734 88.1475 4 834 2 chr5B.!!$F2 830
11 TraesCS1D01G053700 chr2B 545922502 545923014 512 False 743.0 743 92.9820 327 834 1 chr2B.!!$F2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 249 0.106918 TTGCCGTGAGAAAACCCAGT 60.107 50.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 2432 1.066587 GAAGCTCCACGAGATCCGG 59.933 63.158 0.0 0.0 43.93 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 82 5.371526 TCCGAGTAGTAGATCGTGGTAAAT 58.628 41.667 4.51 0.00 37.23 1.40
149 172 1.232119 TTTTCCTTTTCGAGGTCGGC 58.768 50.000 0.00 0.00 46.39 5.54
150 173 0.604511 TTTCCTTTTCGAGGTCGGCC 60.605 55.000 0.00 0.00 46.39 6.13
151 174 2.436115 CCTTTTCGAGGTCGGCCC 60.436 66.667 0.08 0.00 40.95 5.80
153 176 1.741770 CTTTTCGAGGTCGGCCCTG 60.742 63.158 0.08 0.00 46.51 4.45
182 205 0.462047 GATCGGTCACGGATTTGGCT 60.462 55.000 0.00 0.00 41.39 4.75
195 218 1.552799 TTTGGCTCCGCTGGATCTGA 61.553 55.000 0.00 0.00 0.00 3.27
196 219 1.964608 TTGGCTCCGCTGGATCTGAG 61.965 60.000 0.00 0.00 0.00 3.35
221 247 1.104577 GGTTGCCGTGAGAAAACCCA 61.105 55.000 0.00 0.00 39.20 4.51
222 248 0.310854 GTTGCCGTGAGAAAACCCAG 59.689 55.000 0.00 0.00 0.00 4.45
223 249 0.106918 TTGCCGTGAGAAAACCCAGT 60.107 50.000 0.00 0.00 0.00 4.00
225 251 0.591659 GCCGTGAGAAAACCCAGTTC 59.408 55.000 0.00 0.00 0.00 3.01
228 254 1.525619 CGTGAGAAAACCCAGTTCGTC 59.474 52.381 0.00 0.00 0.00 4.20
230 256 1.137479 TGAGAAAACCCAGTTCGTCGT 59.863 47.619 0.00 0.00 0.00 4.34
231 257 2.207590 GAGAAAACCCAGTTCGTCGTT 58.792 47.619 0.00 0.00 0.00 3.85
232 258 1.937899 AGAAAACCCAGTTCGTCGTTG 59.062 47.619 0.00 0.00 0.00 4.10
233 259 1.667212 GAAAACCCAGTTCGTCGTTGT 59.333 47.619 0.00 0.00 0.00 3.32
234 260 1.011333 AAACCCAGTTCGTCGTTGTG 58.989 50.000 0.00 0.00 0.00 3.33
235 261 0.812412 AACCCAGTTCGTCGTTGTGG 60.812 55.000 0.00 0.00 0.00 4.17
236 262 1.068417 CCCAGTTCGTCGTTGTGGA 59.932 57.895 9.99 0.00 0.00 4.02
237 263 0.531090 CCCAGTTCGTCGTTGTGGAA 60.531 55.000 9.99 0.00 0.00 3.53
238 264 1.292061 CCAGTTCGTCGTTGTGGAAA 58.708 50.000 4.19 0.00 0.00 3.13
247 273 4.211330 TTGTGGAAAGGGCGCCCA 62.211 61.111 45.13 24.03 38.92 5.36
260 286 0.452585 GCGCCCAAATTAGCCGTTAA 59.547 50.000 0.00 0.00 0.00 2.01
267 293 3.857093 CCAAATTAGCCGTTAATGTGTGC 59.143 43.478 4.89 0.00 35.87 4.57
284 310 2.892640 CGAAGTCATGCCCGAGGA 59.107 61.111 0.00 0.00 0.00 3.71
285 311 1.519455 CGAAGTCATGCCCGAGGAC 60.519 63.158 0.00 0.00 35.49 3.85
303 329 2.352421 GGACTTTCGTCAGTTGGATCGA 60.352 50.000 0.00 0.00 42.05 3.59
304 330 2.662156 GACTTTCGTCAGTTGGATCGAC 59.338 50.000 0.00 0.00 39.98 4.20
314 340 1.659622 TTGGATCGACGCGGCTCTTA 61.660 55.000 11.76 0.00 0.00 2.10
318 344 0.660595 ATCGACGCGGCTCTTAATCG 60.661 55.000 11.76 7.88 0.00 3.34
321 347 1.053811 GACGCGGCTCTTAATCGATC 58.946 55.000 12.47 0.00 0.00 3.69
323 349 0.385598 CGCGGCTCTTAATCGATCGA 60.386 55.000 21.86 21.86 0.00 3.59
324 350 1.729472 CGCGGCTCTTAATCGATCGAT 60.729 52.381 24.60 24.60 36.23 3.59
342 368 4.631131 TCGATCGATCATGCCATTAGTTT 58.369 39.130 24.40 0.00 0.00 2.66
344 370 4.377738 CGATCGATCATGCCATTAGTTTGG 60.378 45.833 24.40 0.00 39.94 3.28
376 402 2.866762 GTGGAATTCGTAGTCAGGATGC 59.133 50.000 0.00 0.00 34.76 3.91
377 403 2.128035 GGAATTCGTAGTCAGGATGCG 58.872 52.381 0.00 0.00 34.76 4.73
378 404 2.481449 GGAATTCGTAGTCAGGATGCGT 60.481 50.000 0.00 0.00 34.76 5.24
379 405 3.243301 GGAATTCGTAGTCAGGATGCGTA 60.243 47.826 0.00 0.00 34.76 4.42
380 406 4.357142 GAATTCGTAGTCAGGATGCGTAA 58.643 43.478 0.00 0.00 34.76 3.18
381 407 3.416119 TTCGTAGTCAGGATGCGTAAG 57.584 47.619 0.00 0.00 34.76 2.34
413 444 1.247567 CTACTTGCACTGGGTTTGGG 58.752 55.000 0.00 0.00 0.00 4.12
415 446 0.553819 ACTTGCACTGGGTTTGGGTA 59.446 50.000 0.00 0.00 0.00 3.69
417 448 2.035632 CTTGCACTGGGTTTGGGTAAA 58.964 47.619 0.00 0.00 0.00 2.01
455 496 7.875041 AGTCTCTCCGATTGGTTAATAATCATG 59.125 37.037 0.00 0.00 34.90 3.07
501 551 5.388408 TGATTAGCACATGCATGTTTCAA 57.612 34.783 29.48 21.17 45.16 2.69
524 574 3.560068 CCGTCTTGTATGAATAGGTTGCC 59.440 47.826 0.00 0.00 0.00 4.52
580 630 6.684897 AGTGGAAATTGAAATGGGAATTGA 57.315 33.333 0.00 0.00 0.00 2.57
680 730 3.311871 GCAGCACTCACTCAAGAATATGG 59.688 47.826 0.00 0.00 0.00 2.74
717 767 2.169832 ATGTTCTGTTGTGAGGACGG 57.830 50.000 0.00 0.00 0.00 4.79
787 840 4.319549 GCTCTCGAACCGACAAGAAAATTT 60.320 41.667 0.00 0.00 0.00 1.82
834 891 3.491964 CCTGGTGGCAATTCATATGCTTG 60.492 47.826 11.43 11.43 43.34 4.01
835 892 3.098377 TGGTGGCAATTCATATGCTTGT 58.902 40.909 15.13 0.00 43.34 3.16
836 893 4.276642 TGGTGGCAATTCATATGCTTGTA 58.723 39.130 15.13 6.40 43.34 2.41
837 894 4.894705 TGGTGGCAATTCATATGCTTGTAT 59.105 37.500 15.13 0.00 43.34 2.29
838 895 5.221283 TGGTGGCAATTCATATGCTTGTATG 60.221 40.000 15.13 4.11 43.34 2.39
839 896 4.682860 GTGGCAATTCATATGCTTGTATGC 59.317 41.667 15.13 11.12 43.34 3.14
841 898 5.163437 TGGCAATTCATATGCTTGTATGCAA 60.163 36.000 15.13 0.00 46.61 4.08
842 899 5.754406 GGCAATTCATATGCTTGTATGCAAA 59.246 36.000 15.13 0.00 46.61 3.68
843 900 6.073980 GGCAATTCATATGCTTGTATGCAAAG 60.074 38.462 15.13 0.00 46.61 2.77
844 901 6.698329 GCAATTCATATGCTTGTATGCAAAGA 59.302 34.615 15.13 0.00 46.61 2.52
845 902 7.384115 GCAATTCATATGCTTGTATGCAAAGAT 59.616 33.333 15.13 0.00 46.61 2.40
846 903 9.256477 CAATTCATATGCTTGTATGCAAAGATT 57.744 29.630 0.00 0.00 46.61 2.40
847 904 9.472361 AATTCATATGCTTGTATGCAAAGATTC 57.528 29.630 0.00 0.00 46.61 2.52
848 905 6.973843 TCATATGCTTGTATGCAAAGATTCC 58.026 36.000 0.00 0.00 46.61 3.01
849 906 6.774170 TCATATGCTTGTATGCAAAGATTCCT 59.226 34.615 0.00 0.00 46.61 3.36
850 907 5.927281 ATGCTTGTATGCAAAGATTCCTT 57.073 34.783 0.71 0.00 46.61 3.36
851 908 5.063180 TGCTTGTATGCAAAGATTCCTTG 57.937 39.130 0.71 0.00 40.29 3.61
852 909 4.766373 TGCTTGTATGCAAAGATTCCTTGA 59.234 37.500 0.71 0.00 40.29 3.02
853 910 5.419788 TGCTTGTATGCAAAGATTCCTTGAT 59.580 36.000 0.71 0.00 40.29 2.57
854 911 5.975939 GCTTGTATGCAAAGATTCCTTGATC 59.024 40.000 0.71 0.00 33.73 2.92
855 912 5.739752 TGTATGCAAAGATTCCTTGATCG 57.260 39.130 0.00 0.00 31.91 3.69
856 913 5.185454 TGTATGCAAAGATTCCTTGATCGT 58.815 37.500 0.00 0.00 31.91 3.73
857 914 4.627611 ATGCAAAGATTCCTTGATCGTG 57.372 40.909 0.00 0.00 31.91 4.35
858 915 3.673902 TGCAAAGATTCCTTGATCGTGA 58.326 40.909 0.00 0.00 31.91 4.35
859 916 4.071423 TGCAAAGATTCCTTGATCGTGAA 58.929 39.130 0.00 0.00 31.91 3.18
860 917 4.518590 TGCAAAGATTCCTTGATCGTGAAA 59.481 37.500 0.00 0.00 31.91 2.69
861 918 5.183713 TGCAAAGATTCCTTGATCGTGAAAT 59.816 36.000 0.00 0.00 31.91 2.17
862 919 6.095377 GCAAAGATTCCTTGATCGTGAAATT 58.905 36.000 0.00 0.00 31.91 1.82
863 920 6.252228 GCAAAGATTCCTTGATCGTGAAATTC 59.748 38.462 0.00 0.00 31.91 2.17
864 921 5.725110 AGATTCCTTGATCGTGAAATTCG 57.275 39.130 0.00 0.00 0.00 3.34
865 922 5.419542 AGATTCCTTGATCGTGAAATTCGA 58.580 37.500 0.00 0.00 41.45 3.71
866 923 4.921470 TTCCTTGATCGTGAAATTCGAC 57.079 40.909 0.00 0.00 40.07 4.20
867 924 4.188247 TCCTTGATCGTGAAATTCGACT 57.812 40.909 0.00 0.00 40.07 4.18
868 925 5.319140 TCCTTGATCGTGAAATTCGACTA 57.681 39.130 0.00 0.00 40.07 2.59
869 926 5.340803 TCCTTGATCGTGAAATTCGACTAG 58.659 41.667 0.00 0.00 40.07 2.57
870 927 5.124936 TCCTTGATCGTGAAATTCGACTAGA 59.875 40.000 0.00 0.00 40.07 2.43
871 928 5.805486 CCTTGATCGTGAAATTCGACTAGAA 59.195 40.000 0.00 0.00 43.93 2.10
872 929 6.310467 CCTTGATCGTGAAATTCGACTAGAAA 59.690 38.462 0.00 0.00 42.91 2.52
873 930 7.148639 CCTTGATCGTGAAATTCGACTAGAAAA 60.149 37.037 0.00 0.00 42.91 2.29
874 931 7.278211 TGATCGTGAAATTCGACTAGAAAAG 57.722 36.000 0.00 0.00 42.91 2.27
875 932 6.310467 TGATCGTGAAATTCGACTAGAAAAGG 59.690 38.462 0.00 0.00 42.91 3.11
876 933 5.775686 TCGTGAAATTCGACTAGAAAAGGA 58.224 37.500 0.00 0.00 42.91 3.36
877 934 6.218019 TCGTGAAATTCGACTAGAAAAGGAA 58.782 36.000 0.00 0.00 42.91 3.36
878 935 6.872020 TCGTGAAATTCGACTAGAAAAGGAAT 59.128 34.615 0.00 0.00 42.91 3.01
879 936 6.955963 CGTGAAATTCGACTAGAAAAGGAATG 59.044 38.462 0.00 0.00 42.91 2.67
880 937 7.360101 CGTGAAATTCGACTAGAAAAGGAATGT 60.360 37.037 0.00 0.00 42.91 2.71
881 938 7.746475 GTGAAATTCGACTAGAAAAGGAATGTG 59.254 37.037 0.00 0.00 42.91 3.21
882 939 7.444183 TGAAATTCGACTAGAAAAGGAATGTGT 59.556 33.333 0.00 0.00 42.91 3.72
883 940 6.727824 ATTCGACTAGAAAAGGAATGTGTG 57.272 37.500 0.00 0.00 42.91 3.82
884 941 4.566004 TCGACTAGAAAAGGAATGTGTGG 58.434 43.478 0.00 0.00 0.00 4.17
885 942 3.125316 CGACTAGAAAAGGAATGTGTGGC 59.875 47.826 0.00 0.00 0.00 5.01
886 943 3.074412 ACTAGAAAAGGAATGTGTGGCG 58.926 45.455 0.00 0.00 0.00 5.69
887 944 0.598065 AGAAAAGGAATGTGTGGCGC 59.402 50.000 0.00 0.00 0.00 6.53
888 945 0.598065 GAAAAGGAATGTGTGGCGCT 59.402 50.000 7.64 0.00 0.00 5.92
889 946 0.314935 AAAAGGAATGTGTGGCGCTG 59.685 50.000 7.64 0.00 0.00 5.18
890 947 2.146073 AAAGGAATGTGTGGCGCTGC 62.146 55.000 7.64 0.29 0.00 5.25
891 948 3.058160 GGAATGTGTGGCGCTGCT 61.058 61.111 7.64 0.00 0.00 4.24
892 949 2.177531 GAATGTGTGGCGCTGCTG 59.822 61.111 7.64 0.00 0.00 4.41
893 950 3.958822 GAATGTGTGGCGCTGCTGC 62.959 63.158 7.64 5.34 0.00 5.25
898 955 4.695231 GTGGCGCTGCTGCTGTTG 62.695 66.667 14.03 0.00 36.97 3.33
900 957 3.049674 GGCGCTGCTGCTGTTGTA 61.050 61.111 14.03 0.00 36.97 2.41
901 958 2.616330 GGCGCTGCTGCTGTTGTAA 61.616 57.895 14.03 0.00 36.97 2.41
902 959 1.503542 GCGCTGCTGCTGTTGTAAT 59.496 52.632 14.03 0.00 36.97 1.89
903 960 0.795735 GCGCTGCTGCTGTTGTAATG 60.796 55.000 14.03 0.00 36.97 1.90
904 961 0.795735 CGCTGCTGCTGTTGTAATGC 60.796 55.000 14.03 0.00 36.97 3.56
905 962 0.457337 GCTGCTGCTGTTGTAATGCC 60.457 55.000 8.53 0.00 36.03 4.40
906 963 0.883153 CTGCTGCTGTTGTAATGCCA 59.117 50.000 0.00 0.00 0.00 4.92
907 964 1.270274 CTGCTGCTGTTGTAATGCCAA 59.730 47.619 0.00 0.00 0.00 4.52
908 965 1.000385 TGCTGCTGTTGTAATGCCAAC 60.000 47.619 0.00 0.00 43.95 3.77
909 966 1.270550 GCTGCTGTTGTAATGCCAACT 59.729 47.619 8.66 0.00 44.01 3.16
910 967 2.288395 GCTGCTGTTGTAATGCCAACTT 60.288 45.455 8.66 0.00 44.01 2.66
911 968 3.311106 CTGCTGTTGTAATGCCAACTTG 58.689 45.455 8.66 4.21 44.01 3.16
912 969 2.692557 TGCTGTTGTAATGCCAACTTGT 59.307 40.909 8.66 0.00 44.01 3.16
913 970 3.885901 TGCTGTTGTAATGCCAACTTGTA 59.114 39.130 8.66 1.02 44.01 2.41
914 971 4.522405 TGCTGTTGTAATGCCAACTTGTAT 59.478 37.500 8.66 0.00 44.01 2.29
915 972 4.858692 GCTGTTGTAATGCCAACTTGTATG 59.141 41.667 8.66 0.00 44.01 2.39
916 973 4.804108 TGTTGTAATGCCAACTTGTATGC 58.196 39.130 8.66 0.00 44.01 3.14
917 974 4.522405 TGTTGTAATGCCAACTTGTATGCT 59.478 37.500 8.66 0.00 44.01 3.79
918 975 5.010516 TGTTGTAATGCCAACTTGTATGCTT 59.989 36.000 8.66 0.00 44.01 3.91
919 976 5.058149 TGTAATGCCAACTTGTATGCTTG 57.942 39.130 0.00 0.00 0.00 4.01
920 977 4.522405 TGTAATGCCAACTTGTATGCTTGT 59.478 37.500 0.00 0.00 0.00 3.16
961 1022 7.198390 TCTATCGTGTACTAACATTTGCCTAC 58.802 38.462 0.00 0.00 38.08 3.18
962 1023 4.497300 TCGTGTACTAACATTTGCCTACC 58.503 43.478 0.00 0.00 38.08 3.18
963 1024 4.221262 TCGTGTACTAACATTTGCCTACCT 59.779 41.667 0.00 0.00 38.08 3.08
964 1025 4.328983 CGTGTACTAACATTTGCCTACCTG 59.671 45.833 0.00 0.00 38.08 4.00
965 1026 5.484715 GTGTACTAACATTTGCCTACCTGA 58.515 41.667 0.00 0.00 38.08 3.86
966 1027 6.113411 GTGTACTAACATTTGCCTACCTGAT 58.887 40.000 0.00 0.00 38.08 2.90
967 1028 6.258068 GTGTACTAACATTTGCCTACCTGATC 59.742 42.308 0.00 0.00 38.08 2.92
968 1029 5.435686 ACTAACATTTGCCTACCTGATCA 57.564 39.130 0.00 0.00 0.00 2.92
969 1030 5.815581 ACTAACATTTGCCTACCTGATCAA 58.184 37.500 0.00 0.00 0.00 2.57
970 1031 5.648092 ACTAACATTTGCCTACCTGATCAAC 59.352 40.000 0.00 0.00 0.00 3.18
971 1032 4.032960 ACATTTGCCTACCTGATCAACA 57.967 40.909 0.00 0.00 0.00 3.33
974 1035 5.481473 ACATTTGCCTACCTGATCAACAATT 59.519 36.000 0.00 0.00 0.00 2.32
978 1039 5.565509 TGCCTACCTGATCAACAATTTGTA 58.434 37.500 1.76 0.00 34.02 2.41
985 1046 8.458573 ACCTGATCAACAATTTGTACAGTTAA 57.541 30.769 1.76 0.00 36.36 2.01
986 1047 8.567948 ACCTGATCAACAATTTGTACAGTTAAG 58.432 33.333 1.76 2.06 36.36 1.85
995 1056 4.510038 TTGTACAGTTAAGTCCCTCGAC 57.490 45.455 0.00 0.00 39.50 4.20
1017 1078 1.026718 CAATGGGAGGAGGCAACGAC 61.027 60.000 0.00 0.00 46.39 4.34
1182 1264 4.937431 GCATACCCTCCTGCGCCC 62.937 72.222 4.18 0.00 0.00 6.13
1260 1342 3.064324 GGTGCTCATGGTGGTGGC 61.064 66.667 0.00 0.00 0.00 5.01
1353 1456 2.045438 CATGGCTACCCACCGCAA 60.045 61.111 0.00 0.00 45.77 4.85
1486 1589 1.952296 CAAAGCCATCATAGCACCCTC 59.048 52.381 0.00 0.00 0.00 4.30
1495 1598 3.300388 TCATAGCACCCTCTCTGTTAGG 58.700 50.000 0.00 0.00 0.00 2.69
1517 1620 7.227049 AGGAACATTTACATTTCCACGATTT 57.773 32.000 2.61 0.00 41.24 2.17
1518 1621 7.312899 AGGAACATTTACATTTCCACGATTTC 58.687 34.615 2.61 0.00 41.24 2.17
1689 1969 2.349590 TGTGTCATTCTTCAGCATCCG 58.650 47.619 0.00 0.00 0.00 4.18
2142 2432 2.832661 TGTGGTGTGGTTGCTGCC 60.833 61.111 0.00 0.00 0.00 4.85
2176 2468 4.841246 GGAGCTTCCATCCTTTCCTCTATA 59.159 45.833 0.00 0.00 36.28 1.31
2177 2469 5.487131 GGAGCTTCCATCCTTTCCTCTATAT 59.513 44.000 0.00 0.00 36.28 0.86
2256 2550 3.423539 TTCTGTCTGGTGCTATGCTTT 57.576 42.857 0.00 0.00 0.00 3.51
2257 2551 4.551702 TTCTGTCTGGTGCTATGCTTTA 57.448 40.909 0.00 0.00 0.00 1.85
2278 2581 1.267532 CCGCTGTTCATATGTCGTTGC 60.268 52.381 1.90 2.13 0.00 4.17
2280 2583 2.285256 CGCTGTTCATATGTCGTTGCTC 60.285 50.000 1.90 0.00 0.00 4.26
2287 2590 3.618594 TCATATGTCGTTGCTCTTTCTGC 59.381 43.478 1.90 0.00 0.00 4.26
2296 2599 1.066215 TGCTCTTTCTGCGGCATCTTA 60.066 47.619 1.75 0.00 0.00 2.10
2311 2616 5.504665 CGGCATCTTATTCTGAATTGGTGTC 60.505 44.000 8.38 9.04 0.00 3.67
2327 2632 0.808125 TGTCGTGTTTGCTTTGCTGT 59.192 45.000 0.00 0.00 0.00 4.40
2329 2634 1.090728 TCGTGTTTGCTTTGCTGTGA 58.909 45.000 0.00 0.00 0.00 3.58
2382 2734 3.557595 CGGGCAAGCAACATTTTGTAAAA 59.442 39.130 0.00 0.00 34.90 1.52
2397 2749 9.188588 CATTTTGTAAAATGCTGCTCCATATAG 57.811 33.333 14.85 0.00 45.86 1.31
2398 2750 5.947228 TGTAAAATGCTGCTCCATATAGC 57.053 39.130 0.00 0.00 43.08 2.97
2414 2766 8.374184 TCCATATAGCAATAGTAATGCACCTA 57.626 34.615 12.62 1.76 46.22 3.08
2416 2768 9.618890 CCATATAGCAATAGTAATGCACCTAAT 57.381 33.333 12.62 1.38 46.22 1.73
2421 2773 7.056635 AGCAATAGTAATGCACCTAATCAACT 58.943 34.615 12.62 0.00 46.22 3.16
2424 2776 9.507280 CAATAGTAATGCACCTAATCAACTTTG 57.493 33.333 0.00 0.00 0.00 2.77
2431 2783 4.695455 GCACCTAATCAACTTTGTAGAGCA 59.305 41.667 0.00 0.00 0.00 4.26
2432 2784 5.355350 GCACCTAATCAACTTTGTAGAGCAT 59.645 40.000 0.00 0.00 0.00 3.79
2433 2785 6.457528 GCACCTAATCAACTTTGTAGAGCATC 60.458 42.308 0.00 0.00 0.00 3.91
2447 2799 6.999950 TGTAGAGCATCCTGTTACAAACTTA 58.000 36.000 0.00 0.00 33.66 2.24
2448 2800 7.097192 TGTAGAGCATCCTGTTACAAACTTAG 58.903 38.462 0.00 0.00 33.66 2.18
2450 2802 6.166982 AGAGCATCCTGTTACAAACTTAGTC 58.833 40.000 0.00 0.00 33.66 2.59
2486 2838 2.029020 ACAGACTTAGCTGTTCGATGCA 60.029 45.455 0.00 0.00 46.42 3.96
2492 2844 2.907910 AGCTGTTCGATGCAACATTC 57.092 45.000 0.00 0.00 35.70 2.67
2496 2848 3.125146 GCTGTTCGATGCAACATTCTGTA 59.875 43.478 0.00 0.00 35.70 2.74
2497 2849 4.726021 GCTGTTCGATGCAACATTCTGTAG 60.726 45.833 0.00 0.00 35.70 2.74
2498 2850 3.125146 TGTTCGATGCAACATTCTGTAGC 59.875 43.478 0.00 0.00 31.08 3.58
2500 2852 3.333804 TCGATGCAACATTCTGTAGCAA 58.666 40.909 0.00 0.00 38.85 3.91
2501 2853 3.940852 TCGATGCAACATTCTGTAGCAAT 59.059 39.130 0.00 0.00 38.85 3.56
2503 2855 4.437794 CGATGCAACATTCTGTAGCAATGT 60.438 41.667 0.00 0.00 44.67 2.71
2504 2856 4.163458 TGCAACATTCTGTAGCAATGTG 57.837 40.909 0.58 0.00 42.47 3.21
2505 2857 3.569277 TGCAACATTCTGTAGCAATGTGT 59.431 39.130 0.58 0.00 42.47 3.72
2506 2858 4.037803 TGCAACATTCTGTAGCAATGTGTT 59.962 37.500 0.58 0.00 42.47 3.32
2507 2859 4.984161 GCAACATTCTGTAGCAATGTGTTT 59.016 37.500 0.58 0.00 42.47 2.83
2508 2860 5.117592 GCAACATTCTGTAGCAATGTGTTTC 59.882 40.000 0.58 0.00 42.47 2.78
2509 2861 6.207928 CAACATTCTGTAGCAATGTGTTTCA 58.792 36.000 0.58 0.00 42.47 2.69
2510 2862 6.005583 ACATTCTGTAGCAATGTGTTTCAG 57.994 37.500 0.00 0.00 41.86 3.02
2511 2863 5.764686 ACATTCTGTAGCAATGTGTTTCAGA 59.235 36.000 0.00 0.00 41.86 3.27
2512 2864 6.262944 ACATTCTGTAGCAATGTGTTTCAGAA 59.737 34.615 13.55 13.55 41.86 3.02
2515 2867 2.405892 AGCAATGTGTTTCAGAACGC 57.594 45.000 0.00 0.00 44.56 4.84
2526 2878 4.455533 TGTTTCAGAACGCTAATCTTGCAT 59.544 37.500 0.00 0.00 38.65 3.96
2530 2882 3.557185 CAGAACGCTAATCTTGCATAGCA 59.443 43.478 15.40 0.00 43.71 3.49
2533 2885 3.535561 ACGCTAATCTTGCATAGCAGTT 58.464 40.909 15.40 0.00 43.71 3.16
2551 2903 5.298276 AGCAGTTTTACAATCGGTTTCAGAA 59.702 36.000 0.00 0.00 0.00 3.02
2554 2906 6.970043 CAGTTTTACAATCGGTTTCAGAACAA 59.030 34.615 0.00 0.00 37.51 2.83
2574 2927 7.445707 AGAACAATATGATCTCTAGACGCACTA 59.554 37.037 0.00 0.00 0.00 2.74
2576 2929 6.712998 ACAATATGATCTCTAGACGCACTAGT 59.287 38.462 14.11 0.00 46.15 2.57
2577 2930 6.978343 ATATGATCTCTAGACGCACTAGTC 57.022 41.667 14.11 7.74 46.15 2.59
2583 2936 6.268825 TCTCTAGACGCACTAGTCATTTTT 57.731 37.500 14.11 0.00 46.15 1.94
2585 2938 5.408356 TCTAGACGCACTAGTCATTTTTCC 58.592 41.667 14.11 0.00 46.15 3.13
2586 2939 4.273148 AGACGCACTAGTCATTTTTCCT 57.727 40.909 0.00 0.00 43.24 3.36
2591 2944 3.420893 CACTAGTCATTTTTCCTGGGCA 58.579 45.455 0.00 0.00 0.00 5.36
2592 2945 3.191371 CACTAGTCATTTTTCCTGGGCAC 59.809 47.826 0.00 0.00 0.00 5.01
2593 2946 2.683211 AGTCATTTTTCCTGGGCACT 57.317 45.000 0.00 0.00 0.00 4.40
2594 2947 3.806949 AGTCATTTTTCCTGGGCACTA 57.193 42.857 0.00 0.00 0.00 2.74
2596 2949 3.074538 AGTCATTTTTCCTGGGCACTAGT 59.925 43.478 0.00 0.00 34.02 2.57
2600 2953 1.568504 TTTCCTGGGCACTAGTCGAT 58.431 50.000 0.00 0.00 34.02 3.59
2601 2954 0.824109 TTCCTGGGCACTAGTCGATG 59.176 55.000 0.00 0.00 34.02 3.84
2602 2955 0.033503 TCCTGGGCACTAGTCGATGA 60.034 55.000 0.00 0.00 34.02 2.92
2603 2956 0.387202 CCTGGGCACTAGTCGATGAG 59.613 60.000 0.00 0.00 34.02 2.90
2606 2959 0.103208 GGGCACTAGTCGATGAGGTG 59.897 60.000 0.00 0.00 0.00 4.00
2607 2960 0.103208 GGCACTAGTCGATGAGGTGG 59.897 60.000 0.00 0.00 0.00 4.61
2608 2961 0.103208 GCACTAGTCGATGAGGTGGG 59.897 60.000 0.00 0.00 0.00 4.61
2609 2962 1.475403 CACTAGTCGATGAGGTGGGT 58.525 55.000 0.00 0.00 0.00 4.51
2611 2964 3.223435 CACTAGTCGATGAGGTGGGTAT 58.777 50.000 0.00 0.00 0.00 2.73
2613 2966 3.890147 ACTAGTCGATGAGGTGGGTATTC 59.110 47.826 0.00 0.00 0.00 1.75
2619 2972 1.191535 TGAGGTGGGTATTCACTCGG 58.808 55.000 0.00 0.00 37.75 4.63
2626 2979 2.372504 TGGGTATTCACTCGGTGGAAAA 59.627 45.455 4.52 0.00 33.87 2.29
2628 2981 4.225492 TGGGTATTCACTCGGTGGAAAATA 59.775 41.667 4.52 0.43 33.87 1.40
2629 2982 4.573607 GGGTATTCACTCGGTGGAAAATAC 59.426 45.833 13.06 13.06 33.70 1.89
2630 2983 4.573607 GGTATTCACTCGGTGGAAAATACC 59.426 45.833 18.91 18.91 40.36 2.73
2634 2987 2.027561 CACTCGGTGGAAAATACCCAGA 60.028 50.000 0.00 0.00 34.66 3.86
2638 2991 2.553466 CGGTGGAAAATACCCAGACCAA 60.553 50.000 0.00 0.00 34.66 3.67
2640 2993 4.626771 CGGTGGAAAATACCCAGACCAATA 60.627 45.833 0.00 0.00 34.66 1.90
2641 2994 5.454966 GGTGGAAAATACCCAGACCAATAT 58.545 41.667 0.00 0.00 33.75 1.28
2642 2995 5.897250 GGTGGAAAATACCCAGACCAATATT 59.103 40.000 0.00 0.00 33.75 1.28
2643 2996 6.040504 GGTGGAAAATACCCAGACCAATATTC 59.959 42.308 0.00 0.00 33.75 1.75
2644 2997 6.605594 GTGGAAAATACCCAGACCAATATTCA 59.394 38.462 0.00 0.00 33.75 2.57
2646 2999 7.843760 TGGAAAATACCCAGACCAATATTCAAT 59.156 33.333 0.00 0.00 0.00 2.57
2647 3000 8.360390 GGAAAATACCCAGACCAATATTCAATC 58.640 37.037 0.00 0.00 0.00 2.67
2648 3001 7.510549 AAATACCCAGACCAATATTCAATCG 57.489 36.000 0.00 0.00 0.00 3.34
2650 3003 3.202151 ACCCAGACCAATATTCAATCGGT 59.798 43.478 0.00 0.00 0.00 4.69
2654 3007 5.356751 CCAGACCAATATTCAATCGGTTTCA 59.643 40.000 0.00 0.00 0.00 2.69
2655 3008 6.127758 CCAGACCAATATTCAATCGGTTTCAA 60.128 38.462 0.00 0.00 0.00 2.69
2656 3009 7.312154 CAGACCAATATTCAATCGGTTTCAAA 58.688 34.615 0.00 0.00 0.00 2.69
2658 3011 7.812669 AGACCAATATTCAATCGGTTTCAAAAC 59.187 33.333 0.00 0.00 38.17 2.43
2659 3012 7.437748 ACCAATATTCAATCGGTTTCAAAACA 58.562 30.769 7.82 0.00 40.63 2.83
2660 3013 8.093927 ACCAATATTCAATCGGTTTCAAAACAT 58.906 29.630 7.82 0.00 40.63 2.71
2662 3015 9.956797 CAATATTCAATCGGTTTCAAAACATTC 57.043 29.630 7.82 0.00 40.63 2.67
2663 3016 8.702163 ATATTCAATCGGTTTCAAAACATTCC 57.298 30.769 7.82 0.00 40.63 3.01
2664 3017 4.877282 TCAATCGGTTTCAAAACATTCCC 58.123 39.130 7.82 0.00 40.63 3.97
2665 3018 3.953712 ATCGGTTTCAAAACATTCCCC 57.046 42.857 7.82 0.00 40.63 4.81
2679 3032 1.209621 TTCCCCTGACTTAATCCCCG 58.790 55.000 0.00 0.00 0.00 5.73
2683 3036 0.830648 CCTGACTTAATCCCCGCTCA 59.169 55.000 0.00 0.00 0.00 4.26
2685 3038 2.632996 CCTGACTTAATCCCCGCTCATA 59.367 50.000 0.00 0.00 0.00 2.15
2687 3040 4.248859 CTGACTTAATCCCCGCTCATATG 58.751 47.826 0.00 0.00 0.00 1.78
2688 3041 3.901222 TGACTTAATCCCCGCTCATATGA 59.099 43.478 5.07 5.07 0.00 2.15
2689 3042 4.532126 TGACTTAATCCCCGCTCATATGAT 59.468 41.667 5.72 0.00 0.00 2.45
2690 3043 5.013079 TGACTTAATCCCCGCTCATATGATT 59.987 40.000 5.72 0.00 0.00 2.57
2691 3044 6.212589 TGACTTAATCCCCGCTCATATGATTA 59.787 38.462 5.72 0.00 0.00 1.75
2731 3117 3.483574 CCAGAATTGACGGACGAAATTCG 60.484 47.826 14.35 14.35 46.93 3.34
2786 3172 5.994668 ACTTTGAGGTGCAGAAAAACAAAAA 59.005 32.000 0.00 0.00 0.00 1.94
2816 3205 3.428534 TCATCGTCATCACACAGAAAACG 59.571 43.478 0.00 0.00 38.70 3.60
2824 3213 1.157870 ACACAGAAAACGGAGCGGTG 61.158 55.000 0.00 0.00 34.60 4.94
3060 3450 1.885388 CACCGTCTTGGCGTTGTCA 60.885 57.895 0.00 0.00 43.94 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.330198 AGGAGCATGGAATGGATAAGGA 58.670 45.455 0.00 0.00 46.86 3.36
1 2 3.803186 AGGAGCATGGAATGGATAAGG 57.197 47.619 0.00 0.00 46.86 2.69
2 3 5.221803 ACTGTAGGAGCATGGAATGGATAAG 60.222 44.000 0.00 0.00 46.86 1.73
51 52 1.532007 CCACGATCTACTACTCGGAGC 59.468 57.143 4.58 0.00 39.16 4.70
52 53 2.836262 ACCACGATCTACTACTCGGAG 58.164 52.381 2.83 2.83 39.16 4.63
150 173 2.757124 CCGATCCCCCTTTCCCAGG 61.757 68.421 0.00 0.00 43.49 4.45
151 174 1.984288 GACCGATCCCCCTTTCCCAG 61.984 65.000 0.00 0.00 0.00 4.45
152 175 1.999002 GACCGATCCCCCTTTCCCA 60.999 63.158 0.00 0.00 0.00 4.37
153 176 1.999002 TGACCGATCCCCCTTTCCC 60.999 63.158 0.00 0.00 0.00 3.97
182 205 2.725312 GCCACTCAGATCCAGCGGA 61.725 63.158 1.26 0.00 35.55 5.54
187 210 0.325933 CAACCAGCCACTCAGATCCA 59.674 55.000 0.00 0.00 0.00 3.41
221 247 1.578583 CCTTTCCACAACGACGAACT 58.421 50.000 0.00 0.00 0.00 3.01
222 248 0.584876 CCCTTTCCACAACGACGAAC 59.415 55.000 0.00 0.00 0.00 3.95
223 249 1.161563 GCCCTTTCCACAACGACGAA 61.162 55.000 0.00 0.00 0.00 3.85
225 251 2.943653 GCCCTTTCCACAACGACG 59.056 61.111 0.00 0.00 0.00 5.12
228 254 4.038080 GGCGCCCTTTCCACAACG 62.038 66.667 18.11 0.00 0.00 4.10
230 256 3.740495 TTGGGCGCCCTTTCCACAA 62.740 57.895 43.34 26.17 36.94 3.33
231 257 3.740495 TTTGGGCGCCCTTTCCACA 62.740 57.895 43.34 21.57 36.94 4.17
232 258 1.826340 AATTTGGGCGCCCTTTCCAC 61.826 55.000 43.34 18.31 36.94 4.02
233 259 0.251832 TAATTTGGGCGCCCTTTCCA 60.252 50.000 43.34 23.22 36.94 3.53
234 260 0.459899 CTAATTTGGGCGCCCTTTCC 59.540 55.000 43.34 19.89 36.94 3.13
235 261 0.179111 GCTAATTTGGGCGCCCTTTC 60.179 55.000 43.34 20.30 36.94 2.62
236 262 1.613317 GGCTAATTTGGGCGCCCTTT 61.613 55.000 43.34 32.94 36.56 3.11
237 263 2.058001 GGCTAATTTGGGCGCCCTT 61.058 57.895 43.34 31.68 36.56 3.95
238 264 2.442087 GGCTAATTTGGGCGCCCT 60.442 61.111 43.34 27.54 36.56 5.19
247 273 3.437395 TCGCACACATTAACGGCTAATTT 59.563 39.130 0.00 0.00 0.00 1.82
260 286 1.308069 GGGCATGACTTCGCACACAT 61.308 55.000 0.00 0.00 0.00 3.21
267 293 1.519455 GTCCTCGGGCATGACTTCG 60.519 63.158 0.00 0.00 0.00 3.79
303 329 0.660595 CGATCGATTAAGAGCCGCGT 60.661 55.000 10.26 0.00 0.00 6.01
304 330 0.385598 TCGATCGATTAAGAGCCGCG 60.386 55.000 15.15 0.00 0.00 6.46
318 344 9.458727 CCAAACTAATGGCATGATCGATCGATC 62.459 44.444 38.90 38.90 41.24 3.69
321 347 4.377738 CCAAACTAATGGCATGATCGATCG 60.378 45.833 20.03 9.36 32.78 3.69
334 360 3.069443 ACAACAACCCTGCCAAACTAATG 59.931 43.478 0.00 0.00 0.00 1.90
335 361 3.069443 CACAACAACCCTGCCAAACTAAT 59.931 43.478 0.00 0.00 0.00 1.73
339 365 0.179086 CCACAACAACCCTGCCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
342 368 0.105760 ATTCCACAACAACCCTGCCA 60.106 50.000 0.00 0.00 0.00 4.92
344 370 1.335872 CGAATTCCACAACAACCCTGC 60.336 52.381 0.00 0.00 0.00 4.85
350 376 4.062293 CCTGACTACGAATTCCACAACAA 58.938 43.478 0.00 0.00 0.00 2.83
417 448 3.033368 GGAGAGACTCTGCGAGTTTTT 57.967 47.619 10.44 3.14 43.53 1.94
428 460 7.434492 TGATTATTAACCAATCGGAGAGACTC 58.566 38.462 0.00 0.00 43.63 3.36
455 496 4.718961 ACATGAAGGAAGGGCATACATAC 58.281 43.478 0.00 0.00 0.00 2.39
501 551 4.189231 GCAACCTATTCATACAAGACGGT 58.811 43.478 0.00 0.00 0.00 4.83
524 574 0.739462 TCCATCGTGCCTAACAAGCG 60.739 55.000 0.00 0.00 0.00 4.68
580 630 1.137086 CATCGTGCCTAACTGCCTACT 59.863 52.381 0.00 0.00 0.00 2.57
680 730 7.973944 ACAGAACATTTGACTTGGTAAAAGAAC 59.026 33.333 0.00 0.00 0.00 3.01
787 840 9.373603 GGACATGTTATGTATGTACAGTTAACA 57.626 33.333 15.91 15.91 45.03 2.41
834 891 5.294306 TCACGATCAAGGAATCTTTGCATAC 59.706 40.000 0.00 0.00 0.00 2.39
835 892 5.427378 TCACGATCAAGGAATCTTTGCATA 58.573 37.500 0.00 0.00 0.00 3.14
836 893 4.264253 TCACGATCAAGGAATCTTTGCAT 58.736 39.130 0.00 0.00 0.00 3.96
837 894 3.673902 TCACGATCAAGGAATCTTTGCA 58.326 40.909 0.00 0.00 0.00 4.08
838 895 4.685169 TTCACGATCAAGGAATCTTTGC 57.315 40.909 0.00 0.00 0.00 3.68
839 896 6.467047 CGAATTTCACGATCAAGGAATCTTTG 59.533 38.462 0.00 0.00 0.00 2.77
840 897 6.371548 TCGAATTTCACGATCAAGGAATCTTT 59.628 34.615 0.00 0.00 34.85 2.52
841 898 5.874810 TCGAATTTCACGATCAAGGAATCTT 59.125 36.000 0.00 0.00 34.85 2.40
842 899 5.292101 GTCGAATTTCACGATCAAGGAATCT 59.708 40.000 0.00 0.00 41.62 2.40
843 900 5.292101 AGTCGAATTTCACGATCAAGGAATC 59.708 40.000 0.00 0.00 41.62 2.52
844 901 5.178797 AGTCGAATTTCACGATCAAGGAAT 58.821 37.500 0.00 0.00 41.62 3.01
845 902 4.566004 AGTCGAATTTCACGATCAAGGAA 58.434 39.130 0.00 0.00 41.62 3.36
846 903 4.188247 AGTCGAATTTCACGATCAAGGA 57.812 40.909 0.00 0.00 41.62 3.36
847 904 5.340803 TCTAGTCGAATTTCACGATCAAGG 58.659 41.667 0.00 0.00 41.62 3.61
848 905 6.871044 TTCTAGTCGAATTTCACGATCAAG 57.129 37.500 0.00 0.00 41.62 3.02
849 906 7.148639 CCTTTTCTAGTCGAATTTCACGATCAA 60.149 37.037 0.00 0.00 41.62 2.57
850 907 6.310467 CCTTTTCTAGTCGAATTTCACGATCA 59.690 38.462 0.00 0.00 41.62 2.92
851 908 6.530534 TCCTTTTCTAGTCGAATTTCACGATC 59.469 38.462 0.00 0.00 41.62 3.69
852 909 6.395629 TCCTTTTCTAGTCGAATTTCACGAT 58.604 36.000 0.00 0.00 41.62 3.73
853 910 5.775686 TCCTTTTCTAGTCGAATTTCACGA 58.224 37.500 0.00 0.00 37.43 4.35
854 911 6.462073 TTCCTTTTCTAGTCGAATTTCACG 57.538 37.500 0.00 0.00 0.00 4.35
855 912 7.746475 CACATTCCTTTTCTAGTCGAATTTCAC 59.254 37.037 0.00 0.00 0.00 3.18
856 913 7.444183 ACACATTCCTTTTCTAGTCGAATTTCA 59.556 33.333 0.00 0.00 0.00 2.69
857 914 7.746475 CACACATTCCTTTTCTAGTCGAATTTC 59.254 37.037 0.00 0.00 0.00 2.17
858 915 7.308589 CCACACATTCCTTTTCTAGTCGAATTT 60.309 37.037 0.00 0.00 0.00 1.82
859 916 6.149474 CCACACATTCCTTTTCTAGTCGAATT 59.851 38.462 0.00 0.00 0.00 2.17
860 917 5.643777 CCACACATTCCTTTTCTAGTCGAAT 59.356 40.000 0.00 0.00 0.00 3.34
861 918 4.994852 CCACACATTCCTTTTCTAGTCGAA 59.005 41.667 0.00 0.00 0.00 3.71
862 919 4.566004 CCACACATTCCTTTTCTAGTCGA 58.434 43.478 0.00 0.00 0.00 4.20
863 920 3.125316 GCCACACATTCCTTTTCTAGTCG 59.875 47.826 0.00 0.00 0.00 4.18
864 921 3.125316 CGCCACACATTCCTTTTCTAGTC 59.875 47.826 0.00 0.00 0.00 2.59
865 922 3.074412 CGCCACACATTCCTTTTCTAGT 58.926 45.455 0.00 0.00 0.00 2.57
866 923 2.159517 GCGCCACACATTCCTTTTCTAG 60.160 50.000 0.00 0.00 0.00 2.43
867 924 1.810151 GCGCCACACATTCCTTTTCTA 59.190 47.619 0.00 0.00 0.00 2.10
868 925 0.598065 GCGCCACACATTCCTTTTCT 59.402 50.000 0.00 0.00 0.00 2.52
869 926 0.598065 AGCGCCACACATTCCTTTTC 59.402 50.000 2.29 0.00 0.00 2.29
870 927 0.314935 CAGCGCCACACATTCCTTTT 59.685 50.000 2.29 0.00 0.00 2.27
871 928 1.959085 CAGCGCCACACATTCCTTT 59.041 52.632 2.29 0.00 0.00 3.11
872 929 2.629656 GCAGCGCCACACATTCCTT 61.630 57.895 2.29 0.00 0.00 3.36
873 930 3.058160 GCAGCGCCACACATTCCT 61.058 61.111 2.29 0.00 0.00 3.36
874 931 3.058160 AGCAGCGCCACACATTCC 61.058 61.111 2.29 0.00 0.00 3.01
875 932 2.177531 CAGCAGCGCCACACATTC 59.822 61.111 2.29 0.00 0.00 2.67
876 933 4.047059 GCAGCAGCGCCACACATT 62.047 61.111 2.29 0.00 0.00 2.71
886 943 0.457337 GGCATTACAACAGCAGCAGC 60.457 55.000 0.00 0.00 42.56 5.25
887 944 0.883153 TGGCATTACAACAGCAGCAG 59.117 50.000 0.00 0.00 0.00 4.24
888 945 1.326328 TTGGCATTACAACAGCAGCA 58.674 45.000 0.00 0.00 0.00 4.41
896 953 5.010516 ACAAGCATACAAGTTGGCATTACAA 59.989 36.000 7.96 0.00 0.00 2.41
897 954 4.522405 ACAAGCATACAAGTTGGCATTACA 59.478 37.500 7.96 0.00 0.00 2.41
898 955 5.059404 ACAAGCATACAAGTTGGCATTAC 57.941 39.130 7.96 0.00 0.00 1.89
899 956 6.093495 GTCTACAAGCATACAAGTTGGCATTA 59.907 38.462 7.96 0.00 0.00 1.90
900 957 5.009631 TCTACAAGCATACAAGTTGGCATT 58.990 37.500 7.96 0.00 0.00 3.56
901 958 4.396166 GTCTACAAGCATACAAGTTGGCAT 59.604 41.667 7.96 0.00 0.00 4.40
902 959 3.751175 GTCTACAAGCATACAAGTTGGCA 59.249 43.478 7.96 0.00 0.00 4.92
903 960 3.751175 TGTCTACAAGCATACAAGTTGGC 59.249 43.478 7.96 0.96 0.00 4.52
904 961 4.142816 GCTGTCTACAAGCATACAAGTTGG 60.143 45.833 7.96 0.00 0.00 3.77
905 962 4.452114 TGCTGTCTACAAGCATACAAGTTG 59.548 41.667 0.00 0.00 33.24 3.16
906 963 4.641396 TGCTGTCTACAAGCATACAAGTT 58.359 39.130 0.00 0.00 33.24 2.66
907 964 4.271696 TGCTGTCTACAAGCATACAAGT 57.728 40.909 0.00 0.00 33.24 3.16
908 965 4.931601 TCTTGCTGTCTACAAGCATACAAG 59.068 41.667 0.00 0.00 43.40 3.16
909 966 4.893608 TCTTGCTGTCTACAAGCATACAA 58.106 39.130 0.00 0.00 43.40 2.41
910 967 4.535526 TCTTGCTGTCTACAAGCATACA 57.464 40.909 0.00 0.00 43.40 2.29
911 968 6.314896 AGAAATCTTGCTGTCTACAAGCATAC 59.685 38.462 0.00 0.00 43.40 2.39
912 969 6.409704 AGAAATCTTGCTGTCTACAAGCATA 58.590 36.000 0.00 0.00 43.40 3.14
913 970 5.251764 AGAAATCTTGCTGTCTACAAGCAT 58.748 37.500 0.00 0.00 43.40 3.79
914 971 4.645535 AGAAATCTTGCTGTCTACAAGCA 58.354 39.130 0.00 0.00 43.40 3.91
915 972 4.934602 AGAGAAATCTTGCTGTCTACAAGC 59.065 41.667 0.00 0.00 43.40 4.01
916 973 7.167302 CGATAGAGAAATCTTGCTGTCTACAAG 59.833 40.741 0.00 0.00 41.95 3.16
917 974 6.975197 CGATAGAGAAATCTTGCTGTCTACAA 59.025 38.462 0.00 0.00 39.76 2.41
918 975 6.095580 ACGATAGAGAAATCTTGCTGTCTACA 59.904 38.462 0.00 0.00 41.38 2.74
919 976 6.416455 CACGATAGAGAAATCTTGCTGTCTAC 59.584 42.308 0.00 0.00 41.38 2.59
920 977 6.095580 ACACGATAGAGAAATCTTGCTGTCTA 59.904 38.462 0.00 0.00 41.38 2.59
961 1022 8.567948 ACTTAACTGTACAAATTGTTGATCAGG 58.432 33.333 3.17 0.10 40.09 3.86
962 1023 9.599322 GACTTAACTGTACAAATTGTTGATCAG 57.401 33.333 3.17 10.48 40.77 2.90
963 1024 8.564574 GGACTTAACTGTACAAATTGTTGATCA 58.435 33.333 3.17 0.00 38.20 2.92
964 1025 8.021396 GGGACTTAACTGTACAAATTGTTGATC 58.979 37.037 3.17 3.94 38.20 2.92
965 1026 7.724061 AGGGACTTAACTGTACAAATTGTTGAT 59.276 33.333 3.17 0.00 34.23 2.57
966 1027 7.057894 AGGGACTTAACTGTACAAATTGTTGA 58.942 34.615 3.17 0.56 34.23 3.18
967 1028 7.272037 AGGGACTTAACTGTACAAATTGTTG 57.728 36.000 3.17 0.00 36.39 3.33
968 1029 6.204108 CGAGGGACTTAACTGTACAAATTGTT 59.796 38.462 3.17 0.00 41.55 2.83
969 1030 5.699458 CGAGGGACTTAACTGTACAAATTGT 59.301 40.000 3.43 3.43 41.55 2.71
970 1031 5.929992 TCGAGGGACTTAACTGTACAAATTG 59.070 40.000 0.00 0.00 41.55 2.32
971 1032 5.930569 GTCGAGGGACTTAACTGTACAAATT 59.069 40.000 0.00 0.00 41.55 1.82
974 1035 3.890756 TGTCGAGGGACTTAACTGTACAA 59.109 43.478 0.00 0.00 41.55 2.41
978 1039 1.272769 GCTGTCGAGGGACTTAACTGT 59.727 52.381 0.00 0.00 41.55 3.55
986 1047 1.450312 CCCATTGCTGTCGAGGGAC 60.450 63.158 0.00 0.00 42.25 4.46
995 1056 1.000521 TTGCCTCCTCCCATTGCTG 60.001 57.895 0.00 0.00 0.00 4.41
1191 1273 2.525629 TTCTCCCCGTCACTGCCA 60.526 61.111 0.00 0.00 0.00 4.92
1195 1277 2.284699 CCCCTTCTCCCCGTCACT 60.285 66.667 0.00 0.00 0.00 3.41
1196 1278 4.097361 GCCCCTTCTCCCCGTCAC 62.097 72.222 0.00 0.00 0.00 3.67
1353 1456 1.616327 TGGAGGGTAGCCATGCTGT 60.616 57.895 14.62 0.00 40.10 4.40
1437 1540 9.939802 CAGATCCTTATCAATATCAATGACTGA 57.060 33.333 0.00 0.00 34.81 3.41
1486 1589 8.237267 GTGGAAATGTAAATGTTCCTAACAGAG 58.763 37.037 3.54 0.00 45.95 3.35
1537 1640 5.892160 ATGCATATCAATCCAGCACATAC 57.108 39.130 0.00 0.00 38.12 2.39
1544 1647 8.107399 ACACATCTAAATGCATATCAATCCAG 57.893 34.615 0.00 0.00 36.26 3.86
1689 1969 4.965119 AAAAACAATAGCCGATGAGGAC 57.035 40.909 0.00 0.00 45.00 3.85
1986 2266 6.513393 CGCATTACTTCCACTTCTTGAACTTT 60.513 38.462 0.00 0.00 0.00 2.66
2142 2432 1.066587 GAAGCTCCACGAGATCCGG 59.933 63.158 0.00 0.00 43.93 5.14
2144 2434 2.202866 TGGAAGCTCCACGAGATCC 58.797 57.895 0.00 6.87 42.67 3.36
2176 2468 3.539604 GCAGACTAGAGTGCCAAATCAT 58.460 45.455 0.00 0.00 33.29 2.45
2177 2469 2.675032 CGCAGACTAGAGTGCCAAATCA 60.675 50.000 13.24 0.00 36.24 2.57
2256 2550 3.183754 CAACGACATATGAACAGCGGTA 58.816 45.455 10.38 0.00 0.00 4.02
2257 2551 1.999735 CAACGACATATGAACAGCGGT 59.000 47.619 10.38 0.83 0.00 5.68
2278 2581 4.025061 CAGAATAAGATGCCGCAGAAAGAG 60.025 45.833 0.00 0.00 0.00 2.85
2280 2583 3.873361 TCAGAATAAGATGCCGCAGAAAG 59.127 43.478 0.00 0.00 0.00 2.62
2287 2590 4.336433 ACACCAATTCAGAATAAGATGCCG 59.664 41.667 0.00 0.00 0.00 5.69
2296 2599 4.792704 GCAAACACGACACCAATTCAGAAT 60.793 41.667 0.00 0.00 0.00 2.40
2311 2616 2.124011 ATCACAGCAAAGCAAACACG 57.876 45.000 0.00 0.00 0.00 4.49
2327 2632 3.436704 GGAGCATCGAACAGTTGAAATCA 59.563 43.478 0.00 0.00 34.37 2.57
2329 2634 3.679389 AGGAGCATCGAACAGTTGAAAT 58.321 40.909 0.00 0.00 34.37 2.17
2394 2746 9.003658 GTTGATTAGGTGCATTACTATTGCTAT 57.996 33.333 0.00 0.00 40.77 2.97
2395 2747 8.210946 AGTTGATTAGGTGCATTACTATTGCTA 58.789 33.333 0.00 0.00 40.77 3.49
2396 2748 7.056635 AGTTGATTAGGTGCATTACTATTGCT 58.943 34.615 0.00 0.00 40.77 3.91
2397 2749 7.264373 AGTTGATTAGGTGCATTACTATTGC 57.736 36.000 0.00 0.00 40.55 3.56
2398 2750 9.507280 CAAAGTTGATTAGGTGCATTACTATTG 57.493 33.333 0.00 0.00 0.00 1.90
2399 2751 9.243105 ACAAAGTTGATTAGGTGCATTACTATT 57.757 29.630 0.00 0.00 0.00 1.73
2400 2752 8.807948 ACAAAGTTGATTAGGTGCATTACTAT 57.192 30.769 0.00 0.00 0.00 2.12
2401 2753 9.378551 CTACAAAGTTGATTAGGTGCATTACTA 57.621 33.333 0.00 0.00 0.00 1.82
2402 2754 8.100791 TCTACAAAGTTGATTAGGTGCATTACT 58.899 33.333 0.00 0.00 0.00 2.24
2403 2755 8.263940 TCTACAAAGTTGATTAGGTGCATTAC 57.736 34.615 0.00 0.00 0.00 1.89
2404 2756 7.065803 GCTCTACAAAGTTGATTAGGTGCATTA 59.934 37.037 0.00 0.00 0.00 1.90
2405 2757 6.127897 GCTCTACAAAGTTGATTAGGTGCATT 60.128 38.462 0.00 0.00 0.00 3.56
2406 2758 5.355350 GCTCTACAAAGTTGATTAGGTGCAT 59.645 40.000 0.00 0.00 0.00 3.96
2407 2759 4.695455 GCTCTACAAAGTTGATTAGGTGCA 59.305 41.667 0.00 0.00 0.00 4.57
2408 2760 4.695455 TGCTCTACAAAGTTGATTAGGTGC 59.305 41.667 0.00 1.02 0.00 5.01
2409 2761 6.037610 GGATGCTCTACAAAGTTGATTAGGTG 59.962 42.308 0.00 0.00 0.00 4.00
2414 2766 5.564550 ACAGGATGCTCTACAAAGTTGATT 58.435 37.500 0.00 0.00 42.53 2.57
2416 2768 4.623932 ACAGGATGCTCTACAAAGTTGA 57.376 40.909 0.00 0.00 42.53 3.18
2421 2773 6.296026 AGTTTGTAACAGGATGCTCTACAAA 58.704 36.000 19.29 19.29 42.53 2.83
2424 2776 7.097834 ACTAAGTTTGTAACAGGATGCTCTAC 58.902 38.462 0.00 0.00 42.53 2.59
2431 2783 7.181125 AGGATCAGACTAAGTTTGTAACAGGAT 59.819 37.037 0.00 0.00 0.00 3.24
2432 2784 6.497259 AGGATCAGACTAAGTTTGTAACAGGA 59.503 38.462 0.00 0.00 0.00 3.86
2433 2785 6.591834 CAGGATCAGACTAAGTTTGTAACAGG 59.408 42.308 0.00 0.00 0.00 4.00
2468 2820 2.736721 TGTTGCATCGAACAGCTAAGTC 59.263 45.455 8.91 0.00 32.05 3.01
2470 2822 4.093998 AGAATGTTGCATCGAACAGCTAAG 59.906 41.667 8.91 0.00 39.18 2.18
2472 2824 3.371898 CAGAATGTTGCATCGAACAGCTA 59.628 43.478 8.91 0.00 39.18 3.32
2474 2826 2.512885 CAGAATGTTGCATCGAACAGC 58.487 47.619 0.00 0.00 39.18 4.40
2492 2844 4.457810 CGTTCTGAAACACATTGCTACAG 58.542 43.478 0.00 0.00 34.93 2.74
2496 2848 1.949525 AGCGTTCTGAAACACATTGCT 59.050 42.857 0.00 0.00 34.93 3.91
2497 2849 2.405892 AGCGTTCTGAAACACATTGC 57.594 45.000 0.00 0.00 34.93 3.56
2498 2850 5.931532 AGATTAGCGTTCTGAAACACATTG 58.068 37.500 0.00 0.00 34.93 2.82
2500 2852 5.617751 GCAAGATTAGCGTTCTGAAACACAT 60.618 40.000 0.00 0.00 34.93 3.21
2501 2853 4.319477 GCAAGATTAGCGTTCTGAAACACA 60.319 41.667 0.00 0.00 34.93 3.72
2503 2855 3.812609 TGCAAGATTAGCGTTCTGAAACA 59.187 39.130 0.00 0.00 34.93 2.83
2504 2856 4.404507 TGCAAGATTAGCGTTCTGAAAC 57.595 40.909 0.00 0.00 33.85 2.78
2505 2857 5.220662 GCTATGCAAGATTAGCGTTCTGAAA 60.221 40.000 1.50 0.00 32.27 2.69
2506 2858 4.271049 GCTATGCAAGATTAGCGTTCTGAA 59.729 41.667 1.50 0.00 32.27 3.02
2507 2859 3.804325 GCTATGCAAGATTAGCGTTCTGA 59.196 43.478 1.50 0.00 32.27 3.27
2508 2860 3.557185 TGCTATGCAAGATTAGCGTTCTG 59.443 43.478 11.39 0.00 42.99 3.02
2509 2861 3.797039 TGCTATGCAAGATTAGCGTTCT 58.203 40.909 11.39 0.00 42.99 3.01
2510 2862 3.557595 ACTGCTATGCAAGATTAGCGTTC 59.442 43.478 11.39 0.00 42.99 3.95
2511 2863 3.535561 ACTGCTATGCAAGATTAGCGTT 58.464 40.909 11.39 0.00 42.99 4.84
2512 2864 3.185246 ACTGCTATGCAAGATTAGCGT 57.815 42.857 11.39 9.52 42.99 5.07
2515 2867 9.443283 GATTGTAAAACTGCTATGCAAGATTAG 57.557 33.333 0.00 0.00 38.41 1.73
2526 2878 5.992829 TCTGAAACCGATTGTAAAACTGCTA 59.007 36.000 0.00 0.00 0.00 3.49
2530 2882 6.687081 TGTTCTGAAACCGATTGTAAAACT 57.313 33.333 0.00 0.00 34.28 2.66
2533 2885 9.004717 TCATATTGTTCTGAAACCGATTGTAAA 57.995 29.630 0.00 0.00 34.28 2.01
2551 2903 6.712998 ACTAGTGCGTCTAGAGATCATATTGT 59.287 38.462 18.38 0.00 46.53 2.71
2554 2906 6.468543 TGACTAGTGCGTCTAGAGATCATAT 58.531 40.000 18.38 0.00 46.53 1.78
2574 2927 2.683211 AGTGCCCAGGAAAAATGACT 57.317 45.000 0.00 0.00 0.00 3.41
2575 2928 3.421844 ACTAGTGCCCAGGAAAAATGAC 58.578 45.455 0.00 0.00 0.00 3.06
2576 2929 3.686016 GACTAGTGCCCAGGAAAAATGA 58.314 45.455 0.00 0.00 0.00 2.57
2577 2930 2.420022 CGACTAGTGCCCAGGAAAAATG 59.580 50.000 0.00 0.00 0.00 2.32
2583 2936 0.033503 TCATCGACTAGTGCCCAGGA 60.034 55.000 0.00 0.00 0.00 3.86
2585 2938 0.387202 CCTCATCGACTAGTGCCCAG 59.613 60.000 0.00 0.00 0.00 4.45
2586 2939 0.324368 ACCTCATCGACTAGTGCCCA 60.324 55.000 0.00 0.00 0.00 5.36
2591 2944 3.596940 ATACCCACCTCATCGACTAGT 57.403 47.619 0.00 0.00 0.00 2.57
2592 2945 3.889538 TGAATACCCACCTCATCGACTAG 59.110 47.826 0.00 0.00 0.00 2.57
2593 2946 3.635373 GTGAATACCCACCTCATCGACTA 59.365 47.826 0.00 0.00 0.00 2.59
2594 2947 2.431057 GTGAATACCCACCTCATCGACT 59.569 50.000 0.00 0.00 0.00 4.18
2596 2949 2.693591 GAGTGAATACCCACCTCATCGA 59.306 50.000 0.00 0.00 37.76 3.59
2600 2953 1.191535 CCGAGTGAATACCCACCTCA 58.808 55.000 0.00 0.00 37.76 3.86
2601 2954 1.134788 CACCGAGTGAATACCCACCTC 60.135 57.143 0.00 0.00 37.76 3.85
2602 2955 0.902531 CACCGAGTGAATACCCACCT 59.097 55.000 0.00 0.00 37.76 4.00
2603 2956 0.107848 CCACCGAGTGAATACCCACC 60.108 60.000 5.71 0.00 37.76 4.61
2606 2959 2.773993 TTTCCACCGAGTGAATACCC 57.226 50.000 5.71 0.00 35.23 3.69
2607 2960 4.573607 GGTATTTTCCACCGAGTGAATACC 59.426 45.833 18.91 18.91 40.36 2.73
2608 2961 4.573607 GGGTATTTTCCACCGAGTGAATAC 59.426 45.833 5.71 10.30 36.89 1.89
2609 2962 4.225492 TGGGTATTTTCCACCGAGTGAATA 59.775 41.667 5.71 0.85 36.89 1.75
2611 2964 2.372504 TGGGTATTTTCCACCGAGTGAA 59.627 45.455 5.71 0.00 36.89 3.18
2613 2966 2.027561 TCTGGGTATTTTCCACCGAGTG 60.028 50.000 3.88 0.00 41.30 3.51
2619 2972 6.605594 TGAATATTGGTCTGGGTATTTTCCAC 59.394 38.462 0.00 0.00 0.00 4.02
2626 2979 5.073144 ACCGATTGAATATTGGTCTGGGTAT 59.927 40.000 0.00 0.00 29.99 2.73
2628 2981 3.202151 ACCGATTGAATATTGGTCTGGGT 59.798 43.478 0.00 0.00 29.99 4.51
2629 2982 3.820557 ACCGATTGAATATTGGTCTGGG 58.179 45.455 0.00 0.00 29.99 4.45
2630 2983 5.356751 TGAAACCGATTGAATATTGGTCTGG 59.643 40.000 0.00 0.00 34.79 3.86
2634 2987 7.437748 TGTTTTGAAACCGATTGAATATTGGT 58.562 30.769 0.00 0.00 38.11 3.67
2638 2991 7.763985 GGGAATGTTTTGAAACCGATTGAATAT 59.236 33.333 4.32 0.00 38.11 1.28
2640 2993 5.931724 GGGAATGTTTTGAAACCGATTGAAT 59.068 36.000 4.32 0.00 38.11 2.57
2641 2994 5.293560 GGGAATGTTTTGAAACCGATTGAA 58.706 37.500 4.32 0.00 38.11 2.69
2642 2995 4.262249 GGGGAATGTTTTGAAACCGATTGA 60.262 41.667 4.32 0.00 38.11 2.57
2643 2996 3.993736 GGGGAATGTTTTGAAACCGATTG 59.006 43.478 4.32 0.00 38.11 2.67
2644 2997 3.901222 AGGGGAATGTTTTGAAACCGATT 59.099 39.130 4.32 0.00 38.11 3.34
2646 2999 2.625790 CAGGGGAATGTTTTGAAACCGA 59.374 45.455 4.32 0.00 38.11 4.69
2647 3000 2.625790 TCAGGGGAATGTTTTGAAACCG 59.374 45.455 4.32 0.00 38.11 4.44
2648 3001 3.641436 AGTCAGGGGAATGTTTTGAAACC 59.359 43.478 4.32 0.00 38.11 3.27
2650 3003 7.256154 GGATTAAGTCAGGGGAATGTTTTGAAA 60.256 37.037 0.00 0.00 0.00 2.69
2654 3007 5.023452 GGGATTAAGTCAGGGGAATGTTTT 58.977 41.667 0.00 0.00 0.00 2.43
2655 3008 4.572007 GGGGATTAAGTCAGGGGAATGTTT 60.572 45.833 0.00 0.00 0.00 2.83
2656 3009 3.052869 GGGGATTAAGTCAGGGGAATGTT 60.053 47.826 0.00 0.00 0.00 2.71
2658 3011 2.487265 CGGGGATTAAGTCAGGGGAATG 60.487 54.545 0.00 0.00 0.00 2.67
2659 3012 1.774856 CGGGGATTAAGTCAGGGGAAT 59.225 52.381 0.00 0.00 0.00 3.01
2660 3013 1.209621 CGGGGATTAAGTCAGGGGAA 58.790 55.000 0.00 0.00 0.00 3.97
2662 3015 1.148498 GCGGGGATTAAGTCAGGGG 59.852 63.158 0.00 0.00 0.00 4.79
2663 3016 0.106894 GAGCGGGGATTAAGTCAGGG 59.893 60.000 0.00 0.00 0.00 4.45
2664 3017 0.830648 TGAGCGGGGATTAAGTCAGG 59.169 55.000 0.00 0.00 0.00 3.86
2665 3018 2.918712 ATGAGCGGGGATTAAGTCAG 57.081 50.000 0.00 0.00 0.00 3.51
2786 3172 6.818142 TCTGTGTGATGACGATGACAAATAAT 59.182 34.615 0.00 0.00 26.40 1.28
2798 3184 2.131972 TCCGTTTTCTGTGTGATGACG 58.868 47.619 0.00 0.00 34.95 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.