Multiple sequence alignment - TraesCS1D01G053400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G053400 chr1D 100.000 7023 0 0 1 7023 34622832 34629854 0.000000e+00 12970
1 TraesCS1D01G053400 chr1D 98.753 401 5 0 6523 6923 34635034 34635434 0.000000e+00 713
2 TraesCS1D01G053400 chr1D 84.277 159 19 5 6867 7023 143347740 143347894 4.390000e-32 150
3 TraesCS1D01G053400 chr1A 94.867 2961 152 0 962 3922 32896686 32899646 0.000000e+00 4626
4 TraesCS1D01G053400 chr1A 93.688 2012 99 8 3916 5899 32899679 32901690 0.000000e+00 2987
5 TraesCS1D01G053400 chr1A 81.145 594 86 12 2206 2774 32898281 32898873 2.990000e-123 453
6 TraesCS1D01G053400 chr1A 78.987 533 60 35 5899 6415 32901732 32902228 4.090000e-82 316
7 TraesCS1D01G053400 chr1A 75.142 527 67 31 17 534 32895988 32896459 9.300000e-44 189
8 TraesCS1D01G053400 chr1A 76.265 257 46 5 3630 3886 32898034 32898275 9.570000e-24 122
9 TraesCS1D01G053400 chr1B 90.958 3362 223 36 564 3922 52904045 52907328 0.000000e+00 4449
10 TraesCS1D01G053400 chr1B 92.012 2003 116 13 3918 5899 52907363 52909342 0.000000e+00 2772
11 TraesCS1D01G053400 chr1B 87.407 540 53 6 1 533 52903515 52904046 2.170000e-169 606
12 TraesCS1D01G053400 chr1B 80.808 594 88 10 2206 2774 52905981 52906573 6.470000e-120 442
13 TraesCS1D01G053400 chr1B 81.779 461 63 15 6581 7023 290909619 290909162 4.000000e-97 366
14 TraesCS1D01G053400 chr1B 82.045 440 53 20 6593 7023 48142251 48141829 1.120000e-92 351
15 TraesCS1D01G053400 chr1B 80.988 405 39 11 5419 5809 52909817 52910197 3.210000e-73 287
16 TraesCS1D01G053400 chr1B 79.412 340 66 3 3919 4256 52906701 52907038 3.270000e-58 237
17 TraesCS1D01G053400 chr1B 77.619 420 68 18 6523 6923 290903974 290903562 1.520000e-56 231
18 TraesCS1D01G053400 chr1B 77.481 262 42 14 3629 3889 52905733 52905978 2.640000e-29 141
19 TraesCS1D01G053400 chr7D 96.517 402 13 1 6523 6923 579059407 579059808 0.000000e+00 664
20 TraesCS1D01G053400 chr7D 87.931 406 42 5 6523 6923 99002474 99002877 8.250000e-129 472
21 TraesCS1D01G053400 chr7D 86.241 407 49 5 6523 6924 99026242 99026646 1.080000e-117 435
22 TraesCS1D01G053400 chr7D 82.873 181 25 6 6846 7023 65793405 65793582 2.620000e-34 158
23 TraesCS1D01G053400 chr7D 91.892 111 8 1 6913 7023 350546394 350546503 3.390000e-33 154
24 TraesCS1D01G053400 chr6A 80.273 512 79 19 6523 7022 145151478 145150977 4.000000e-97 366
25 TraesCS1D01G053400 chr6A 79.943 349 56 14 6584 6923 145145750 145145407 1.960000e-60 244
26 TraesCS1D01G053400 chr6A 92.857 98 5 2 130 226 76578628 76578724 2.640000e-29 141
27 TraesCS1D01G053400 chr5D 83.455 411 49 14 6523 6924 389504800 389505200 1.440000e-96 364
28 TraesCS1D01G053400 chr6B 81.553 412 52 16 6621 7023 558674116 558673720 1.140000e-82 318
29 TraesCS1D01G053400 chr4B 80.813 443 51 25 6593 7023 349105844 349105424 4.090000e-82 316
30 TraesCS1D01G053400 chr3D 82.222 180 27 4 6848 7023 390122890 390123068 4.390000e-32 150
31 TraesCS1D01G053400 chr3D 91.589 107 8 1 121 226 614203929 614203823 5.680000e-31 147
32 TraesCS1D01G053400 chr2A 93.137 102 5 2 130 230 36628193 36628293 1.580000e-31 148
33 TraesCS1D01G053400 chr3B 92.233 103 8 0 124 226 823577946 823577844 5.680000e-31 147
34 TraesCS1D01G053400 chr3A 91.589 107 8 1 121 226 750504234 750504128 5.680000e-31 147
35 TraesCS1D01G053400 chr2B 93.878 98 4 2 130 226 55881137 55881233 5.680000e-31 147
36 TraesCS1D01G053400 chr2D 92.157 102 6 2 130 230 33718817 33718917 7.340000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G053400 chr1D 34622832 34629854 7022 False 12970.000000 12970 100.000000 1 7023 1 chr1D.!!$F1 7022
1 TraesCS1D01G053400 chr1A 32895988 32902228 6240 False 1448.833333 4626 83.349000 17 6415 6 chr1A.!!$F1 6398
2 TraesCS1D01G053400 chr1B 52903515 52910197 6682 False 1276.285714 4449 84.152286 1 5899 7 chr1B.!!$F1 5898
3 TraesCS1D01G053400 chr6A 145150977 145151478 501 True 366.000000 366 80.273000 6523 7022 1 chr6A.!!$R2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 249 0.034337 TCCGTTCCCCTTCTTCGTTG 59.966 55.0 0.00 0.00 0.00 4.10 F
1566 1578 0.249911 AGGAGTTCAACGAAAGCGCT 60.250 50.0 2.64 2.64 42.48 5.92 F
3187 3199 0.040958 GCAGTTTGAGCTTGACGGTG 60.041 55.0 0.00 0.00 0.00 4.94 F
4533 4587 0.975887 GGATCCCAAGCTTTTTGCCA 59.024 50.0 0.00 0.00 44.23 4.92 F
4892 4946 1.021390 GGTGGCACAAGTGATCCTCG 61.021 60.0 20.82 0.00 44.16 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1674 0.169672 CCATTGCTTGGCTGAACGAG 59.830 55.0 0.00 0.00 39.09 4.18 R
3377 3389 0.762842 TAGGTCGTGATCCCATGGGG 60.763 60.0 30.93 14.28 46.11 4.96 R
4892 4946 0.884704 TTCGGGTTCAGCTTCTGCAC 60.885 55.0 0.00 0.00 42.74 4.57 R
5344 5398 0.032130 GCTGGATTCATGCATGCCAG 59.968 55.0 31.79 31.79 46.82 4.85 R
6506 6650 0.036952 CACACGAGTCCTCAGGCAAT 60.037 55.0 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.980423 GCTGGAGGAGAAGGTGAACT 59.020 55.000 0.00 0.00 0.00 3.01
64 65 0.340208 AGGTGAACTAGGGAGGGAGG 59.660 60.000 0.00 0.00 0.00 4.30
76 77 0.906066 GAGGGAGGTTGGAGGAAGAC 59.094 60.000 0.00 0.00 0.00 3.01
233 238 2.669240 CCTCCAAGGTCCGTTCCC 59.331 66.667 0.00 0.00 0.00 3.97
241 246 1.079336 GGTCCGTTCCCCTTCTTCG 60.079 63.158 0.00 0.00 0.00 3.79
242 247 1.670015 GTCCGTTCCCCTTCTTCGT 59.330 57.895 0.00 0.00 0.00 3.85
243 248 0.034476 GTCCGTTCCCCTTCTTCGTT 59.966 55.000 0.00 0.00 0.00 3.85
244 249 0.034337 TCCGTTCCCCTTCTTCGTTG 59.966 55.000 0.00 0.00 0.00 4.10
248 253 3.431725 CCCCTTCTTCGTTGCGCC 61.432 66.667 4.18 0.00 0.00 6.53
249 254 2.668212 CCCTTCTTCGTTGCGCCA 60.668 61.111 4.18 0.00 0.00 5.69
274 280 3.128764 CCATATACGCGCCTAGATCTCAA 59.871 47.826 5.73 0.00 0.00 3.02
283 289 2.807392 GCCTAGATCTCAATGCTTGCTC 59.193 50.000 0.00 0.00 0.00 4.26
298 304 1.825090 TGCTCGGCACATCTTTGATT 58.175 45.000 0.00 0.00 31.71 2.57
304 310 5.807011 GCTCGGCACATCTTTGATTATTTTT 59.193 36.000 0.00 0.00 0.00 1.94
306 312 6.027131 TCGGCACATCTTTGATTATTTTTCG 58.973 36.000 0.00 0.00 0.00 3.46
316 322 8.289618 TCTTTGATTATTTTTCGTGGTCAGAAG 58.710 33.333 0.00 0.00 0.00 2.85
354 360 6.238731 CCTGCAGAAGTTGTCAAATGAAGTAA 60.239 38.462 17.39 0.00 0.00 2.24
363 369 7.643764 AGTTGTCAAATGAAGTAACATTTCGTG 59.356 33.333 0.00 0.00 45.00 4.35
384 390 5.576774 CGTGTATAGTCAGTTGCTTCATGAA 59.423 40.000 8.12 8.12 0.00 2.57
388 394 8.257306 TGTATAGTCAGTTGCTTCATGAATGTA 58.743 33.333 8.96 0.28 0.00 2.29
413 419 5.419788 TCATGGAATCTAGTTGCAGCAAAAT 59.580 36.000 10.11 4.28 41.68 1.82
418 424 7.555914 TGGAATCTAGTTGCAGCAAAATATGTA 59.444 33.333 10.11 0.00 32.79 2.29
434 440 7.775397 AAATATGTACTTTGCATTGCCATTC 57.225 32.000 6.12 0.00 0.00 2.67
437 444 3.825585 TGTACTTTGCATTGCCATTCTGA 59.174 39.130 6.12 0.00 0.00 3.27
456 463 4.761739 TCTGACCAAGAAACACATGGATTC 59.238 41.667 0.00 0.00 39.44 2.52
462 469 6.721208 ACCAAGAAACACATGGATTCTGTAAT 59.279 34.615 9.71 0.00 39.44 1.89
471 478 8.677300 ACACATGGATTCTGTAATGAAATACAC 58.323 33.333 0.00 0.00 32.56 2.90
485 492 7.601073 ATGAAATACACACTACATCACTGTG 57.399 36.000 0.17 0.17 40.98 3.66
491 498 2.965831 ACACTACATCACTGTGAGGTGT 59.034 45.455 31.36 26.51 41.84 4.16
493 500 4.141711 ACACTACATCACTGTGAGGTGTTT 60.142 41.667 31.36 19.22 41.84 2.83
503 510 6.038161 TCACTGTGAGGTGTTTATGAAACTTG 59.962 38.462 6.36 0.00 41.90 3.16
535 542 6.544928 TCAGGTTAGCAGAAATGTATCTCA 57.455 37.500 0.00 0.00 0.00 3.27
536 543 6.341316 TCAGGTTAGCAGAAATGTATCTCAC 58.659 40.000 0.00 0.00 0.00 3.51
537 544 6.155221 TCAGGTTAGCAGAAATGTATCTCACT 59.845 38.462 0.00 0.00 0.00 3.41
538 545 7.342026 TCAGGTTAGCAGAAATGTATCTCACTA 59.658 37.037 0.00 0.00 0.00 2.74
539 546 7.651304 CAGGTTAGCAGAAATGTATCTCACTAG 59.349 40.741 0.00 0.00 0.00 2.57
540 547 7.343316 AGGTTAGCAGAAATGTATCTCACTAGT 59.657 37.037 0.00 0.00 0.00 2.57
541 548 7.982354 GGTTAGCAGAAATGTATCTCACTAGTT 59.018 37.037 0.00 0.00 0.00 2.24
542 549 9.372369 GTTAGCAGAAATGTATCTCACTAGTTT 57.628 33.333 0.00 0.00 0.00 2.66
543 550 9.587772 TTAGCAGAAATGTATCTCACTAGTTTC 57.412 33.333 0.00 0.00 0.00 2.78
544 551 7.846066 AGCAGAAATGTATCTCACTAGTTTCT 58.154 34.615 0.00 0.00 35.94 2.52
545 552 8.317679 AGCAGAAATGTATCTCACTAGTTTCTT 58.682 33.333 0.00 0.00 34.65 2.52
546 553 8.940952 GCAGAAATGTATCTCACTAGTTTCTTT 58.059 33.333 0.00 0.00 34.65 2.52
577 584 4.221041 GGGGGTATCTCACTAGTTGATAGC 59.779 50.000 23.34 23.34 39.22 2.97
589 596 7.928167 TCACTAGTTGATAGCAAAGATATGTGG 59.072 37.037 0.00 0.00 35.42 4.17
624 631 7.333672 GGTCACTCGGATAAAGAAATACTGTTT 59.666 37.037 0.00 0.00 0.00 2.83
625 632 8.718734 GTCACTCGGATAAAGAAATACTGTTTT 58.281 33.333 0.00 0.00 0.00 2.43
663 670 8.449423 AGCATATATACAGTTAAATCCCCTCA 57.551 34.615 0.00 0.00 0.00 3.86
687 695 2.857592 AAATGATGCACCATTCGAGC 57.142 45.000 6.79 0.00 35.86 5.03
688 696 2.048444 AATGATGCACCATTCGAGCT 57.952 45.000 0.00 0.00 31.61 4.09
692 700 1.063174 GATGCACCATTCGAGCTGTTC 59.937 52.381 0.00 0.00 0.00 3.18
694 702 1.089920 GCACCATTCGAGCTGTTCAT 58.910 50.000 0.00 0.00 0.00 2.57
699 707 4.571984 CACCATTCGAGCTGTTCATGATTA 59.428 41.667 0.00 0.00 0.00 1.75
703 711 7.028962 CCATTCGAGCTGTTCATGATTAAAAA 58.971 34.615 0.00 0.00 0.00 1.94
704 712 7.008628 CCATTCGAGCTGTTCATGATTAAAAAC 59.991 37.037 0.00 0.00 0.00 2.43
705 713 6.552859 TCGAGCTGTTCATGATTAAAAACA 57.447 33.333 0.00 0.00 0.00 2.83
706 714 7.144722 TCGAGCTGTTCATGATTAAAAACAT 57.855 32.000 0.00 0.00 31.73 2.71
707 715 8.262715 TCGAGCTGTTCATGATTAAAAACATA 57.737 30.769 0.00 0.00 31.73 2.29
708 716 8.390354 TCGAGCTGTTCATGATTAAAAACATAG 58.610 33.333 0.00 0.00 31.73 2.23
709 717 7.641411 CGAGCTGTTCATGATTAAAAACATAGG 59.359 37.037 0.00 0.00 31.73 2.57
710 718 7.260603 AGCTGTTCATGATTAAAAACATAGGC 58.739 34.615 0.00 0.00 31.73 3.93
711 719 7.035004 GCTGTTCATGATTAAAAACATAGGCA 58.965 34.615 0.00 0.00 31.73 4.75
712 720 7.707893 GCTGTTCATGATTAAAAACATAGGCAT 59.292 33.333 0.00 0.00 31.73 4.40
742 750 6.025896 TCTACAGAAATTAAGTGTACGAGCG 58.974 40.000 0.00 0.00 0.00 5.03
758 766 2.741878 CGAGCGGAAACCACTTGGATAT 60.742 50.000 1.14 0.00 38.94 1.63
766 774 4.396357 AACCACTTGGATATCAACCCAA 57.604 40.909 4.83 0.00 39.88 4.12
769 777 3.443681 CCACTTGGATATCAACCCAACAC 59.556 47.826 4.83 0.00 37.50 3.32
770 778 3.443681 CACTTGGATATCAACCCAACACC 59.556 47.826 4.83 0.00 37.50 4.16
771 779 3.075283 ACTTGGATATCAACCCAACACCA 59.925 43.478 4.83 0.00 37.50 4.17
772 780 3.816398 TGGATATCAACCCAACACCAA 57.184 42.857 4.83 0.00 0.00 3.67
773 781 4.329638 TGGATATCAACCCAACACCAAT 57.670 40.909 4.83 0.00 0.00 3.16
774 782 4.682563 TGGATATCAACCCAACACCAATT 58.317 39.130 4.83 0.00 0.00 2.32
775 783 5.832221 TGGATATCAACCCAACACCAATTA 58.168 37.500 4.83 0.00 0.00 1.40
795 803 1.993956 ACTGCTTTGGTGCCAACATA 58.006 45.000 2.72 0.00 35.46 2.29
807 815 5.593909 TGGTGCCAACATATCTTTAATCAGG 59.406 40.000 0.00 0.00 0.00 3.86
812 820 6.998673 GCCAACATATCTTTAATCAGGGTACT 59.001 38.462 0.00 0.00 0.00 2.73
822 830 9.832445 TCTTTAATCAGGGTACTATGAAACATC 57.168 33.333 4.95 0.00 0.00 3.06
824 832 6.831664 AATCAGGGTACTATGAAACATCCT 57.168 37.500 4.95 0.00 0.00 3.24
825 833 6.831664 ATCAGGGTACTATGAAACATCCTT 57.168 37.500 4.95 0.00 0.00 3.36
870 878 6.223138 GCACATGCAATTGGATATTGATTG 57.777 37.500 19.13 8.41 41.59 2.67
874 882 7.169140 CACATGCAATTGGATATTGATTGTGAG 59.831 37.037 17.57 3.65 41.09 3.51
878 886 6.704493 GCAATTGGATATTGATTGTGAGCAAT 59.296 34.615 7.72 0.00 46.99 3.56
880 888 8.547894 CAATTGGATATTGATTGTGAGCAATTG 58.452 33.333 0.00 0.00 44.61 2.32
881 889 5.593968 TGGATATTGATTGTGAGCAATTGC 58.406 37.500 23.05 23.05 44.61 3.56
882 890 4.986659 GGATATTGATTGTGAGCAATTGCC 59.013 41.667 26.45 17.77 44.61 4.52
888 896 4.280425 TGATTGTGAGCAATTGCCTTTACA 59.720 37.500 26.45 21.03 44.61 2.41
889 897 4.870123 TTGTGAGCAATTGCCTTTACAT 57.130 36.364 26.45 6.29 43.38 2.29
892 900 2.187707 GAGCAATTGCCTTTACATGCG 58.812 47.619 26.45 0.00 43.38 4.73
893 901 1.818060 AGCAATTGCCTTTACATGCGA 59.182 42.857 26.45 0.00 43.38 5.10
894 902 2.428171 AGCAATTGCCTTTACATGCGAT 59.572 40.909 26.45 0.16 43.38 4.58
896 904 3.618150 GCAATTGCCTTTACATGCGATTT 59.382 39.130 20.06 0.00 39.09 2.17
897 905 4.259930 GCAATTGCCTTTACATGCGATTTC 60.260 41.667 20.06 0.00 39.09 2.17
899 907 4.355543 TTGCCTTTACATGCGATTTCTC 57.644 40.909 0.00 0.00 0.00 2.87
900 908 2.682856 TGCCTTTACATGCGATTTCTCC 59.317 45.455 0.00 0.00 0.00 3.71
901 909 2.682856 GCCTTTACATGCGATTTCTCCA 59.317 45.455 0.00 0.00 0.00 3.86
902 910 3.128589 GCCTTTACATGCGATTTCTCCAA 59.871 43.478 0.00 0.00 0.00 3.53
903 911 4.380444 GCCTTTACATGCGATTTCTCCAAA 60.380 41.667 0.00 0.00 0.00 3.28
936 944 4.869215 TGAATTGCATTGTGGTGTAACTG 58.131 39.130 0.00 0.00 36.74 3.16
942 950 5.066593 TGCATTGTGGTGTAACTGAATACA 58.933 37.500 0.00 0.00 36.74 2.29
969 981 5.007385 AGCACTACTATACTTTTGGTCGG 57.993 43.478 0.00 0.00 0.00 4.79
970 982 4.117685 GCACTACTATACTTTTGGTCGGG 58.882 47.826 0.00 0.00 0.00 5.14
1008 1020 3.690475 TGATGCGCAGATATGGAAGAT 57.310 42.857 18.32 0.00 0.00 2.40
1017 1029 5.511373 CGCAGATATGGAAGATAGGGTCAAA 60.511 44.000 0.00 0.00 0.00 2.69
1035 1047 5.189180 GTCAAATGCATCCTCTTACTCCTT 58.811 41.667 0.00 0.00 0.00 3.36
1233 1245 5.163405 TGACCAGGTTCAGTATTCTATGCTC 60.163 44.000 0.00 0.00 0.00 4.26
1260 1272 2.168521 GGATGATGACAGTCTCCCGAAA 59.831 50.000 1.31 0.00 0.00 3.46
1263 1275 0.976641 ATGACAGTCTCCCGAAAGCA 59.023 50.000 1.31 0.00 0.00 3.91
1270 1282 0.391130 TCTCCCGAAAGCATTCACGG 60.391 55.000 2.22 0.00 43.77 4.94
1296 1308 5.182380 GGTTGATCCTCGTAAAATCCACAAA 59.818 40.000 0.00 0.00 0.00 2.83
1377 1389 1.888512 GGAAAGAATTGTGCAGCTCCA 59.111 47.619 0.00 0.00 0.00 3.86
1379 1391 2.283145 AAGAATTGTGCAGCTCCAGT 57.717 45.000 0.00 0.00 0.00 4.00
1515 1527 6.013984 ACTGGGATCTTGAAAAGCAAATCAAT 60.014 34.615 0.00 0.00 45.70 2.57
1566 1578 0.249911 AGGAGTTCAACGAAAGCGCT 60.250 50.000 2.64 2.64 42.48 5.92
1572 1584 1.225855 TCAACGAAAGCGCTGTGATT 58.774 45.000 12.58 0.00 42.48 2.57
1587 1599 3.200483 TGTGATTGAAGATGATGAGGCG 58.800 45.455 0.00 0.00 0.00 5.52
1607 1619 1.925847 GAGAGCTTTGATGACAGCGAG 59.074 52.381 0.00 0.00 0.00 5.03
1642 1654 0.955428 TGAAGACGCCATTGCCAGAC 60.955 55.000 0.00 0.00 0.00 3.51
1650 1662 2.110967 CATTGCCAGACTGCGGGAG 61.111 63.158 0.00 0.00 0.00 4.30
1752 1764 5.902613 TGAAAGAGCATGGTAAATTCCTG 57.097 39.130 0.00 0.00 0.00 3.86
1755 1767 3.535561 AGAGCATGGTAAATTCCTGTCG 58.464 45.455 0.00 0.00 0.00 4.35
1799 1811 4.495349 CGAGAATGTGAGAAATGATGCCAC 60.495 45.833 0.00 0.00 0.00 5.01
1848 1860 8.274322 TCTATGAAGCAGGAGAAAATTGGAATA 58.726 33.333 0.00 0.00 0.00 1.75
2025 2037 3.582647 TGGAAAACACAGAGCTGGAGATA 59.417 43.478 0.00 0.00 34.19 1.98
2031 2043 3.636300 ACACAGAGCTGGAGATATCACTC 59.364 47.826 5.32 3.93 36.31 3.51
2050 2062 4.470764 AGGAACTGGAGGGAGAGC 57.529 61.111 0.00 0.00 37.18 4.09
2063 2075 1.831736 GGGAGAGCAGGCAGTAGTAAA 59.168 52.381 0.00 0.00 0.00 2.01
2070 2082 2.550208 GCAGGCAGTAGTAAACAGTGGT 60.550 50.000 0.00 0.00 0.00 4.16
2154 2166 0.831966 AGAGCTCCTTCCATGCAGAG 59.168 55.000 10.93 0.00 0.00 3.35
2187 2199 6.612306 AGTCTATTCAAATTTCGCTGAAACC 58.388 36.000 5.99 0.00 35.31 3.27
2199 2211 1.266989 GCTGAAACCGCAAGTAGCTTT 59.733 47.619 0.00 0.00 42.61 3.51
2217 2229 9.991906 AGTAGCTTTTGTTGTATTACAGACTTA 57.008 29.630 0.00 0.00 0.00 2.24
2246 2258 1.239968 CCTCCTGTTGAGCACCAAGC 61.240 60.000 0.00 0.00 46.19 4.01
2353 2365 7.504403 TGAAGAAGATCCTCAGATGGATAAAC 58.496 38.462 0.00 0.00 46.00 2.01
2373 2385 3.149196 ACCTACAACAAAGCCTGACATG 58.851 45.455 0.00 0.00 0.00 3.21
2416 2428 3.702548 TGGTAAATTGGAGCTAGCTACGA 59.297 43.478 19.64 19.64 0.00 3.43
2421 2433 0.955178 TGGAGCTAGCTACGATCAGC 59.045 55.000 22.04 4.88 42.12 4.26
2522 2534 2.533266 AGAAAGTCGAGCTTTGCAGA 57.467 45.000 14.84 0.00 46.54 4.26
2564 2576 7.542130 GGAAACAGCAGAAAATGTTATTACAGG 59.458 37.037 0.00 0.00 38.66 4.00
2575 2587 8.574251 AAATGTTATTACAGGTATGTTGCAGA 57.426 30.769 0.00 0.00 41.01 4.26
2775 2787 2.098443 GGAGCTAGCTACAGTCAGTGAC 59.902 54.545 22.69 15.78 0.00 3.67
2875 2887 5.131809 TGGGATTGTGGGTTTGAAAGAAATT 59.868 36.000 0.00 0.00 0.00 1.82
2924 2936 2.298163 AGGAAACAGCTGAAAATGCAGG 59.702 45.455 23.35 0.00 36.41 4.85
2927 2939 0.601558 ACAGCTGAAAATGCAGGCAG 59.398 50.000 23.35 0.00 36.41 4.85
2961 2973 0.106708 TGTTGCAGTCACCTCTCACC 59.893 55.000 0.00 0.00 0.00 4.02
2972 2984 1.668294 CTCTCACCGAGCACCAAGT 59.332 57.895 0.00 0.00 31.99 3.16
3011 3023 2.158769 TGACTGATGAAGCAACACCACT 60.159 45.455 0.00 0.00 0.00 4.00
3019 3031 1.595382 GCAACACCACTCGCTGACT 60.595 57.895 0.00 0.00 0.00 3.41
3022 3034 1.399744 AACACCACTCGCTGACTCCA 61.400 55.000 0.00 0.00 0.00 3.86
3034 3046 0.770499 TGACTCCAAACCATCTGGCA 59.230 50.000 0.00 0.00 39.32 4.92
3042 3054 2.361757 CAAACCATCTGGCAAGTGTGAA 59.638 45.455 0.00 0.00 39.32 3.18
3127 3139 1.004277 TCCTGGATTGGTGTGGTAAGC 59.996 52.381 0.00 0.00 0.00 3.09
3187 3199 0.040958 GCAGTTTGAGCTTGACGGTG 60.041 55.000 0.00 0.00 0.00 4.94
3268 3280 7.466805 CAGTACATCTGGTGAACATAACAATG 58.533 38.462 0.00 0.00 40.23 2.82
3345 3357 3.005554 ACATTCTCATGAGCAAGGTTCG 58.994 45.455 18.36 3.02 34.11 3.95
3377 3389 2.294233 TGCATCAAAGTTCACCTGAAGC 59.706 45.455 0.00 0.00 35.06 3.86
3425 3437 2.691526 TGGATGGCAAGCAAGATTCATC 59.308 45.455 0.00 0.00 0.00 2.92
3434 3446 2.234661 AGCAAGATTCATCGACAGTGGA 59.765 45.455 0.00 0.00 0.00 4.02
3443 3455 3.575687 TCATCGACAGTGGATCATAGCAT 59.424 43.478 0.00 0.00 0.00 3.79
3458 3470 1.720781 AGCATTTTTGGAGGCCACTT 58.279 45.000 5.01 0.00 30.78 3.16
3459 3471 1.345415 AGCATTTTTGGAGGCCACTTG 59.655 47.619 5.01 0.00 30.78 3.16
3582 3594 3.700539 ACAACATGGCTAATATGCAGCAA 59.299 39.130 0.00 1.29 40.95 3.91
3610 3622 2.677914 TGAGTGGACTCCAAGACAAGA 58.322 47.619 0.00 0.00 42.20 3.02
3637 3649 4.117685 GGTACTATTAACCGAGTGCAAGG 58.882 47.826 0.00 0.00 30.65 3.61
3698 3710 6.936900 GCTACAAGGAAGCCTGAAATATATGA 59.063 38.462 0.00 0.00 32.13 2.15
3708 3720 6.944862 AGCCTGAAATATATGAATTCCCTGAC 59.055 38.462 2.27 0.00 0.00 3.51
3710 3722 7.449704 GCCTGAAATATATGAATTCCCTGACTT 59.550 37.037 2.27 0.00 0.00 3.01
3737 3749 5.869888 CCAGTAACTTGGAGCTAGTAAACAG 59.130 44.000 0.00 0.00 40.87 3.16
3771 3783 3.343617 GCAGCCATCTAACAGTTACCAA 58.656 45.455 0.00 0.00 0.00 3.67
3800 3812 1.610522 GGCAGAAAAGCATGACAGTGT 59.389 47.619 0.00 0.00 35.83 3.55
3801 3813 2.606308 GGCAGAAAAGCATGACAGTGTG 60.606 50.000 0.00 0.00 35.83 3.82
3837 3849 2.198827 TGTGGTATTGTGGGCTTGAG 57.801 50.000 0.00 0.00 0.00 3.02
3857 3869 5.555017 TGAGAGAAAATCTAGCTTTGCAGT 58.445 37.500 0.00 0.00 38.84 4.40
3889 3901 7.497909 CGGTAAATAAGGAGAAGGCAGAAAATA 59.502 37.037 0.00 0.00 0.00 1.40
3890 3902 9.355916 GGTAAATAAGGAGAAGGCAGAAAATAT 57.644 33.333 0.00 0.00 0.00 1.28
3898 3910 8.277918 AGGAGAAGGCAGAAAATATAGACAATT 58.722 33.333 0.00 0.00 0.00 2.32
3926 3977 5.480642 TTTGGTGAACATAACAATGGCAT 57.519 34.783 0.00 0.00 0.00 4.40
4019 4070 1.698532 AGTCCCAGGAGATCATCATGC 59.301 52.381 0.00 0.00 38.41 4.06
4025 4076 3.464907 CAGGAGATCATCATGCGAAGTT 58.535 45.455 0.00 0.00 32.12 2.66
4032 4083 4.944619 TCATCATGCGAAGTTAGAGGAT 57.055 40.909 0.00 0.00 0.00 3.24
4059 4110 1.098050 AAGATTCATCAACAGCGGGC 58.902 50.000 0.00 0.00 0.00 6.13
4082 4133 2.603075 AGCATTTCCAAAGGCCACTA 57.397 45.000 5.01 0.00 45.99 2.74
4083 4134 3.105959 AGCATTTCCAAAGGCCACTAT 57.894 42.857 5.01 0.00 45.99 2.12
4157 4208 5.750352 AATTCAATTCCTGGCAGTGAAAT 57.250 34.783 18.44 10.30 32.36 2.17
4158 4209 5.750352 ATTCAATTCCTGGCAGTGAAATT 57.250 34.783 18.44 14.91 32.36 1.82
4443 4494 5.410746 CACTTCTACTGTCAAAGATGCACAT 59.589 40.000 8.55 0.00 0.00 3.21
4533 4587 0.975887 GGATCCCAAGCTTTTTGCCA 59.024 50.000 0.00 0.00 44.23 4.92
4549 4603 1.280133 TGCCAGGTCATCAAAGGAGAG 59.720 52.381 0.00 0.00 0.00 3.20
4563 4617 3.694043 AGGAGAGAAAGTGCTTCTTCC 57.306 47.619 7.03 7.03 44.82 3.46
4565 4619 3.586618 AGGAGAGAAAGTGCTTCTTCCAT 59.413 43.478 13.10 0.00 44.82 3.41
4636 4690 4.508461 TCACATGATGCTGTTTTTCAGG 57.492 40.909 0.00 0.00 43.78 3.86
4892 4946 1.021390 GGTGGCACAAGTGATCCTCG 61.021 60.000 20.82 0.00 44.16 4.63
4930 4984 2.892784 AACCATAGAGAAGCGGCTAC 57.107 50.000 1.35 0.00 0.00 3.58
5017 5071 1.108727 CAGGTTTGCTTCCCTGTGCA 61.109 55.000 7.66 0.00 42.72 4.57
5076 5130 2.027745 TGCAGAGACTGTGGAAGGAATC 60.028 50.000 1.28 0.00 33.43 2.52
5187 5241 6.052360 GGCTGGCTTAGATTATATAAGAGGC 58.948 44.000 10.39 8.06 32.96 4.70
5340 5394 4.309933 CAGCCAAGAAAAAGAAACCATCC 58.690 43.478 0.00 0.00 0.00 3.51
5344 5398 4.309933 CAAGAAAAAGAAACCATCCCTGC 58.690 43.478 0.00 0.00 0.00 4.85
5361 5415 0.684805 TGCTGGCATGCATGAATCCA 60.685 50.000 30.64 24.24 38.12 3.41
5397 5451 4.456911 CAGTACAGTGACATGGCATTCTTT 59.543 41.667 3.50 0.00 0.00 2.52
5463 5521 7.388776 TGCATTAATGGCTATACTTTCAGCTAG 59.611 37.037 17.02 0.00 37.91 3.42
5485 5543 5.308825 AGTGTTGTTCTTCCTATGAGTTGG 58.691 41.667 0.00 0.00 0.00 3.77
5531 5592 0.107017 AGGCCTTCATGATGGAACCG 60.107 55.000 27.35 4.90 0.00 4.44
5568 5629 0.036577 GCCAGATGAGCTGTGTCTGT 60.037 55.000 14.85 0.00 43.33 3.41
5576 5637 0.181114 AGCTGTGTCTGTGAGGCAAA 59.819 50.000 0.00 0.00 28.00 3.68
5583 5644 1.537202 GTCTGTGAGGCAAACATGACC 59.463 52.381 0.00 0.00 0.00 4.02
5594 5655 5.126061 AGGCAAACATGACCTGAAATATGAC 59.874 40.000 0.00 0.00 30.82 3.06
5625 5686 7.023575 GGTTGTATTAGACAGCTTCATTGTTG 58.976 38.462 0.00 0.00 39.88 3.33
5647 5708 3.251571 GGCTAACTACAAGGTTCTCACG 58.748 50.000 0.00 0.00 0.00 4.35
5657 5718 4.876107 ACAAGGTTCTCACGGCATATTTAG 59.124 41.667 0.00 0.00 0.00 1.85
5658 5719 4.755266 AGGTTCTCACGGCATATTTAGT 57.245 40.909 0.00 0.00 0.00 2.24
5672 5733 6.183361 GGCATATTTAGTGGAGAAACTAGGGA 60.183 42.308 0.00 0.00 34.24 4.20
5674 5735 7.939588 GCATATTTAGTGGAGAAACTAGGGATT 59.060 37.037 0.00 0.00 34.24 3.01
5839 5926 0.038892 TAGTGCCGTTCAACGAGGAC 60.039 55.000 12.68 12.78 46.05 3.85
5848 5937 0.593008 TCAACGAGGACGACAACACG 60.593 55.000 0.00 0.00 42.66 4.49
5907 6038 3.947196 AGCAGCCATGAAATAATCGTGAA 59.053 39.130 0.00 0.00 46.22 3.18
5920 6051 7.413475 AATAATCGTGAATTCCTTCATCTCG 57.587 36.000 2.27 0.00 43.08 4.04
5969 6101 0.804364 GCATCAATGGCAGTCGAACA 59.196 50.000 0.00 0.00 0.00 3.18
5984 6116 2.031191 TCGAACAAAACGGAGCAAAGAC 59.969 45.455 0.00 0.00 0.00 3.01
5986 6118 1.375551 ACAAAACGGAGCAAAGACGT 58.624 45.000 0.00 0.00 43.43 4.34
5987 6119 2.553086 ACAAAACGGAGCAAAGACGTA 58.447 42.857 0.00 0.00 40.31 3.57
5988 6120 2.286025 ACAAAACGGAGCAAAGACGTAC 59.714 45.455 0.00 0.00 40.31 3.67
5990 6122 1.779569 AACGGAGCAAAGACGTACAG 58.220 50.000 0.00 0.00 40.31 2.74
5991 6123 0.672342 ACGGAGCAAAGACGTACAGT 59.328 50.000 0.00 0.00 39.30 3.55
5992 6124 1.060713 CGGAGCAAAGACGTACAGTG 58.939 55.000 0.00 0.00 0.00 3.66
6007 6139 4.397103 CGTACAGTGTAGTGATCCTTACCA 59.603 45.833 2.39 0.00 0.00 3.25
6015 6147 2.025887 AGTGATCCTTACCAGCTTTGGG 60.026 50.000 0.00 0.00 0.00 4.12
6028 6160 3.156511 GCTTTGGGCTCTTTCTTATGC 57.843 47.619 0.00 0.00 38.06 3.14
6030 6162 2.897271 TTGGGCTCTTTCTTATGCCA 57.103 45.000 5.21 0.00 46.53 4.92
6037 6169 2.631696 CTTTCTTATGCCACCGCGCG 62.632 60.000 25.67 25.67 38.08 6.86
6115 6247 3.389656 CCCATTTCTACTCTTCCTCCTCC 59.610 52.174 0.00 0.00 0.00 4.30
6233 6366 2.367512 GGGGGAGATGAGGGCACT 60.368 66.667 0.00 0.00 0.00 4.40
6234 6367 2.750657 GGGGGAGATGAGGGCACTG 61.751 68.421 0.00 0.00 0.00 3.66
6235 6368 2.191641 GGGAGATGAGGGCACTGC 59.808 66.667 0.00 0.00 0.00 4.40
6252 6385 3.443045 CCGCCGCTGCTTTGGAAT 61.443 61.111 0.00 0.00 34.43 3.01
6253 6386 2.568090 CGCCGCTGCTTTGGAATT 59.432 55.556 0.00 0.00 34.43 2.17
6254 6387 1.802715 CGCCGCTGCTTTGGAATTG 60.803 57.895 0.00 0.00 34.43 2.32
6255 6388 1.446618 GCCGCTGCTTTGGAATTGG 60.447 57.895 0.00 0.00 33.53 3.16
6256 6389 1.966762 CCGCTGCTTTGGAATTGGT 59.033 52.632 0.00 0.00 0.00 3.67
6257 6390 1.173043 CCGCTGCTTTGGAATTGGTA 58.827 50.000 0.00 0.00 0.00 3.25
6258 6391 1.135402 CCGCTGCTTTGGAATTGGTAC 60.135 52.381 0.00 0.00 0.00 3.34
6259 6392 1.135402 CGCTGCTTTGGAATTGGTACC 60.135 52.381 4.43 4.43 0.00 3.34
6260 6393 1.892474 GCTGCTTTGGAATTGGTACCA 59.108 47.619 11.60 11.60 0.00 3.25
6261 6394 2.352715 GCTGCTTTGGAATTGGTACCAC 60.353 50.000 16.04 3.34 35.81 4.16
6262 6395 2.231235 CTGCTTTGGAATTGGTACCACC 59.769 50.000 16.04 13.75 39.22 4.61
6263 6396 1.201414 GCTTTGGAATTGGTACCACCG 59.799 52.381 16.04 1.69 42.58 4.94
6264 6397 2.785562 CTTTGGAATTGGTACCACCGA 58.214 47.619 16.04 10.11 42.58 4.69
6265 6398 3.352648 CTTTGGAATTGGTACCACCGAT 58.647 45.455 16.04 2.33 44.24 4.18
6267 6400 2.193127 TGGAATTGGTACCACCGATCT 58.807 47.619 16.04 0.00 41.52 2.75
6282 6415 1.683917 CGATCTCTTCCCATCTCCGTT 59.316 52.381 0.00 0.00 0.00 4.44
6285 6418 2.821437 TCTCTTCCCATCTCCGTTTCT 58.179 47.619 0.00 0.00 0.00 2.52
6299 6438 4.293415 TCCGTTTCTGTAGAGTTTCGTTC 58.707 43.478 0.00 0.00 0.00 3.95
6303 6443 5.219804 CGTTTCTGTAGAGTTTCGTTCGATC 60.220 44.000 0.00 0.00 0.00 3.69
6345 6485 2.803956 GGGTTTTGTTCGTGATCTCGAA 59.196 45.455 24.33 24.33 45.46 3.71
6359 6499 3.197790 CGAACTGATGGGCTGGCG 61.198 66.667 0.00 0.00 0.00 5.69
6408 6552 0.172578 TCGTGGACTCGCAATAGGTG 59.827 55.000 0.00 0.00 0.00 4.00
6420 6564 1.139853 CAATAGGTGCCAGGAGAGGAC 59.860 57.143 0.00 0.00 0.00 3.85
6421 6565 0.399233 ATAGGTGCCAGGAGAGGACC 60.399 60.000 0.00 0.00 32.40 4.46
6422 6566 2.531483 TAGGTGCCAGGAGAGGACCC 62.531 65.000 0.00 0.00 32.54 4.46
6424 6568 2.206900 TGCCAGGAGAGGACCCAA 59.793 61.111 0.00 0.00 0.00 4.12
6425 6569 1.920325 TGCCAGGAGAGGACCCAAG 60.920 63.158 0.00 0.00 0.00 3.61
6426 6570 2.993853 CCAGGAGAGGACCCAAGC 59.006 66.667 0.00 0.00 0.00 4.01
6427 6571 2.674220 CCAGGAGAGGACCCAAGCC 61.674 68.421 0.00 0.00 0.00 4.35
6428 6572 1.920325 CAGGAGAGGACCCAAGCCA 60.920 63.158 0.00 0.00 0.00 4.75
6429 6573 1.920835 AGGAGAGGACCCAAGCCAC 60.921 63.158 0.00 0.00 0.00 5.01
6430 6574 2.266055 GAGAGGACCCAAGCCACG 59.734 66.667 0.00 0.00 0.00 4.94
6442 6586 2.125350 GCCACGGCTCCTCTGAAG 60.125 66.667 0.00 0.00 38.26 3.02
6443 6587 2.650116 GCCACGGCTCCTCTGAAGA 61.650 63.158 0.00 0.00 38.26 2.87
6444 6588 1.965754 GCCACGGCTCCTCTGAAGAT 61.966 60.000 0.00 0.00 38.26 2.40
6445 6589 1.403814 CCACGGCTCCTCTGAAGATA 58.596 55.000 0.00 0.00 0.00 1.98
6446 6590 1.757118 CCACGGCTCCTCTGAAGATAA 59.243 52.381 0.00 0.00 0.00 1.75
6447 6591 2.482142 CCACGGCTCCTCTGAAGATAAC 60.482 54.545 0.00 0.00 0.00 1.89
6448 6592 2.428890 CACGGCTCCTCTGAAGATAACT 59.571 50.000 0.00 0.00 0.00 2.24
6449 6593 2.428890 ACGGCTCCTCTGAAGATAACTG 59.571 50.000 0.00 0.00 0.00 3.16
6450 6594 2.690497 CGGCTCCTCTGAAGATAACTGA 59.310 50.000 0.00 0.00 0.00 3.41
6451 6595 3.131223 CGGCTCCTCTGAAGATAACTGAA 59.869 47.826 0.00 0.00 0.00 3.02
6452 6596 4.692228 GGCTCCTCTGAAGATAACTGAAG 58.308 47.826 0.00 0.00 0.00 3.02
6453 6597 4.119136 GCTCCTCTGAAGATAACTGAAGC 58.881 47.826 0.00 0.00 0.00 3.86
6454 6598 4.382470 GCTCCTCTGAAGATAACTGAAGCA 60.382 45.833 0.00 0.00 0.00 3.91
6455 6599 5.336150 TCCTCTGAAGATAACTGAAGCAG 57.664 43.478 0.00 0.00 37.52 4.24
6456 6600 3.870419 CCTCTGAAGATAACTGAAGCAGC 59.130 47.826 0.00 0.00 34.37 5.25
6457 6601 3.515630 TCTGAAGATAACTGAAGCAGCG 58.484 45.455 0.00 0.00 34.37 5.18
6458 6602 3.056536 TCTGAAGATAACTGAAGCAGCGT 60.057 43.478 0.00 0.00 34.37 5.07
6459 6603 3.254060 TGAAGATAACTGAAGCAGCGTC 58.746 45.455 0.65 0.65 34.37 5.19
6460 6604 1.914634 AGATAACTGAAGCAGCGTCG 58.085 50.000 3.75 1.76 34.37 5.12
6461 6605 1.472878 AGATAACTGAAGCAGCGTCGA 59.527 47.619 3.75 0.00 34.37 4.20
6462 6606 1.584308 GATAACTGAAGCAGCGTCGAC 59.416 52.381 5.18 5.18 34.37 4.20
6463 6607 0.728129 TAACTGAAGCAGCGTCGACG 60.728 55.000 32.57 32.57 43.27 5.12
6464 6608 2.126850 CTGAAGCAGCGTCGACGA 60.127 61.111 39.74 17.12 43.02 4.20
6465 6609 1.729484 CTGAAGCAGCGTCGACGAA 60.729 57.895 39.74 14.54 43.02 3.85
6466 6610 1.669158 CTGAAGCAGCGTCGACGAAG 61.669 60.000 39.74 29.37 43.02 3.79
6467 6611 3.060663 GAAGCAGCGTCGACGAAGC 62.061 63.158 39.74 36.03 43.02 3.86
6471 6615 2.643272 AGCGTCGACGAAGCTGAA 59.357 55.556 39.74 0.00 44.74 3.02
6472 6616 1.442857 AGCGTCGACGAAGCTGAAG 60.443 57.895 39.74 9.55 44.74 3.02
6473 6617 1.442184 GCGTCGACGAAGCTGAAGA 60.442 57.895 39.74 0.00 43.02 2.87
6474 6618 1.002250 GCGTCGACGAAGCTGAAGAA 61.002 55.000 39.74 0.00 43.02 2.52
6475 6619 0.978385 CGTCGACGAAGCTGAAGAAG 59.022 55.000 33.35 0.00 43.02 2.85
6476 6620 1.399855 CGTCGACGAAGCTGAAGAAGA 60.400 52.381 33.35 0.00 43.02 2.87
6477 6621 2.662700 GTCGACGAAGCTGAAGAAGAA 58.337 47.619 0.00 0.00 0.00 2.52
6478 6622 2.659279 GTCGACGAAGCTGAAGAAGAAG 59.341 50.000 0.00 0.00 0.00 2.85
6479 6623 1.388431 CGACGAAGCTGAAGAAGAAGC 59.612 52.381 0.00 0.00 39.82 3.86
6480 6624 2.408050 GACGAAGCTGAAGAAGAAGCA 58.592 47.619 0.00 0.00 42.06 3.91
6481 6625 2.802816 GACGAAGCTGAAGAAGAAGCAA 59.197 45.455 0.00 0.00 42.06 3.91
6482 6626 3.206150 ACGAAGCTGAAGAAGAAGCAAA 58.794 40.909 0.00 0.00 42.06 3.68
6483 6627 3.249559 ACGAAGCTGAAGAAGAAGCAAAG 59.750 43.478 0.00 0.00 42.06 2.77
6484 6628 3.364764 CGAAGCTGAAGAAGAAGCAAAGG 60.365 47.826 0.00 0.00 42.06 3.11
6485 6629 3.220674 AGCTGAAGAAGAAGCAAAGGT 57.779 42.857 0.00 0.00 42.06 3.50
6486 6630 3.560105 AGCTGAAGAAGAAGCAAAGGTT 58.440 40.909 0.00 0.00 42.06 3.50
6487 6631 3.567585 AGCTGAAGAAGAAGCAAAGGTTC 59.432 43.478 0.97 0.97 42.06 3.62
6488 6632 3.316308 GCTGAAGAAGAAGCAAAGGTTCA 59.684 43.478 11.00 0.00 41.76 3.18
6489 6633 4.556302 GCTGAAGAAGAAGCAAAGGTTCAG 60.556 45.833 11.00 0.00 41.76 3.02
6490 6634 4.780815 TGAAGAAGAAGCAAAGGTTCAGA 58.219 39.130 11.00 0.00 41.76 3.27
6491 6635 4.576463 TGAAGAAGAAGCAAAGGTTCAGAC 59.424 41.667 11.00 2.92 41.76 3.51
6492 6636 4.156455 AGAAGAAGCAAAGGTTCAGACA 57.844 40.909 11.00 0.00 41.76 3.41
6493 6637 4.526970 AGAAGAAGCAAAGGTTCAGACAA 58.473 39.130 11.00 0.00 41.76 3.18
6494 6638 4.578105 AGAAGAAGCAAAGGTTCAGACAAG 59.422 41.667 11.00 0.00 41.76 3.16
6495 6639 2.620585 AGAAGCAAAGGTTCAGACAAGC 59.379 45.455 11.00 0.00 41.76 4.01
6496 6640 2.057137 AGCAAAGGTTCAGACAAGCA 57.943 45.000 0.00 0.00 0.00 3.91
6497 6641 2.378038 AGCAAAGGTTCAGACAAGCAA 58.622 42.857 0.00 0.00 0.00 3.91
6498 6642 2.099756 AGCAAAGGTTCAGACAAGCAAC 59.900 45.455 0.00 0.00 0.00 4.17
6499 6643 2.719798 CAAAGGTTCAGACAAGCAACG 58.280 47.619 0.00 0.00 0.00 4.10
6500 6644 1.308998 AAGGTTCAGACAAGCAACGG 58.691 50.000 0.00 0.00 0.00 4.44
6501 6645 1.166531 AGGTTCAGACAAGCAACGGC 61.167 55.000 0.00 0.00 41.61 5.68
6502 6646 1.282875 GTTCAGACAAGCAACGGCC 59.717 57.895 0.00 0.00 42.56 6.13
6503 6647 1.896660 TTCAGACAAGCAACGGCCC 60.897 57.895 0.00 0.00 42.56 5.80
6504 6648 2.594303 CAGACAAGCAACGGCCCA 60.594 61.111 0.00 0.00 42.56 5.36
6505 6649 2.281761 AGACAAGCAACGGCCCAG 60.282 61.111 0.00 0.00 42.56 4.45
6506 6650 2.281484 GACAAGCAACGGCCCAGA 60.281 61.111 0.00 0.00 42.56 3.86
6507 6651 1.675641 GACAAGCAACGGCCCAGAT 60.676 57.895 0.00 0.00 42.56 2.90
6508 6652 1.228552 ACAAGCAACGGCCCAGATT 60.229 52.632 0.00 0.00 42.56 2.40
6509 6653 1.213537 CAAGCAACGGCCCAGATTG 59.786 57.895 0.00 0.00 42.56 2.67
6511 6655 4.133796 GCAACGGCCCAGATTGCC 62.134 66.667 14.67 0.00 42.32 4.52
6516 6660 2.123982 GGCCCAGATTGCCTGAGG 60.124 66.667 0.00 0.00 45.78 3.86
6517 6661 2.683465 GGCCCAGATTGCCTGAGGA 61.683 63.158 0.65 0.00 45.78 3.71
6518 6662 1.452833 GCCCAGATTGCCTGAGGAC 60.453 63.158 0.65 0.00 45.78 3.85
6519 6663 1.919600 GCCCAGATTGCCTGAGGACT 61.920 60.000 0.65 0.00 45.78 3.85
6520 6664 0.179936 CCCAGATTGCCTGAGGACTC 59.820 60.000 0.65 0.00 45.78 3.36
6521 6665 0.179089 CCAGATTGCCTGAGGACTCG 60.179 60.000 0.65 0.00 45.78 4.18
6543 6688 4.394729 GTGTGAGGACCAAATTACCAGAA 58.605 43.478 0.00 0.00 0.00 3.02
6544 6689 4.215613 GTGTGAGGACCAAATTACCAGAAC 59.784 45.833 0.00 0.00 0.00 3.01
6547 6692 5.048713 GTGAGGACCAAATTACCAGAACAAG 60.049 44.000 0.00 0.00 0.00 3.16
6548 6693 4.407365 AGGACCAAATTACCAGAACAAGG 58.593 43.478 0.00 0.00 0.00 3.61
6554 6699 2.396590 TTACCAGAACAAGGCGATCC 57.603 50.000 0.00 0.00 0.00 3.36
6557 6702 0.539051 CCAGAACAAGGCGATCCTCT 59.461 55.000 0.00 0.00 43.40 3.69
6559 6704 1.205655 CAGAACAAGGCGATCCTCTCA 59.794 52.381 0.00 0.00 43.40 3.27
6562 6707 2.611225 ACAAGGCGATCCTCTCAATC 57.389 50.000 0.00 0.00 43.40 2.67
6565 6710 2.364970 CAAGGCGATCCTCTCAATCTCT 59.635 50.000 0.00 0.00 43.40 3.10
6567 6834 2.364970 AGGCGATCCTCTCAATCTCTTG 59.635 50.000 0.00 0.00 38.72 3.02
6568 6835 2.134346 GCGATCCTCTCAATCTCTTGC 58.866 52.381 0.00 0.00 32.11 4.01
6572 6839 5.536260 CGATCCTCTCAATCTCTTGCATTA 58.464 41.667 0.00 0.00 32.11 1.90
6573 6840 6.164876 CGATCCTCTCAATCTCTTGCATTAT 58.835 40.000 0.00 0.00 32.11 1.28
6574 6841 6.310956 CGATCCTCTCAATCTCTTGCATTATC 59.689 42.308 0.00 0.00 32.11 1.75
6575 6842 6.490241 TCCTCTCAATCTCTTGCATTATCA 57.510 37.500 0.00 0.00 32.11 2.15
6576 6843 6.522946 TCCTCTCAATCTCTTGCATTATCAG 58.477 40.000 0.00 0.00 32.11 2.90
6580 6847 5.993055 TCAATCTCTTGCATTATCAGTGGA 58.007 37.500 0.00 0.00 32.11 4.02
6581 6848 6.417258 TCAATCTCTTGCATTATCAGTGGAA 58.583 36.000 0.00 0.00 32.11 3.53
6582 6849 6.885918 TCAATCTCTTGCATTATCAGTGGAAA 59.114 34.615 0.00 0.00 32.11 3.13
6586 6853 6.489700 TCTCTTGCATTATCAGTGGAAAAACA 59.510 34.615 0.00 0.00 0.00 2.83
6591 6858 6.939730 TGCATTATCAGTGGAAAAACAGTAGA 59.060 34.615 0.00 0.00 0.00 2.59
6599 6866 8.846211 TCAGTGGAAAAACAGTAGAAATTTAGG 58.154 33.333 0.00 0.00 0.00 2.69
6601 6868 8.002459 AGTGGAAAAACAGTAGAAATTTAGGGA 58.998 33.333 0.00 0.00 0.00 4.20
6610 6877 9.449719 ACAGTAGAAATTTAGGGATACAACTTG 57.550 33.333 0.00 0.00 39.74 3.16
6613 6880 6.194967 AGAAATTTAGGGATACAACTTGGGG 58.805 40.000 0.00 0.00 39.74 4.96
6618 6885 4.692523 AGGGATACAACTTGGGGAATTT 57.307 40.909 0.00 0.00 39.74 1.82
6634 6902 3.490078 GGAATTTCGCGAGATCAGAGACT 60.490 47.826 13.01 0.00 41.60 3.24
6645 6935 1.996798 TCAGAGACTCCGACTTGGTT 58.003 50.000 0.00 0.00 39.52 3.67
6647 6937 0.882474 AGAGACTCCGACTTGGTTCG 59.118 55.000 0.00 0.00 39.52 3.95
6663 6953 2.034432 GGTTCGCTAGCTAGGGTTCTAC 59.966 54.545 30.36 23.09 37.50 2.59
6665 6955 1.213678 TCGCTAGCTAGGGTTCTACCA 59.786 52.381 30.36 12.22 41.02 3.25
6672 6962 4.024670 AGCTAGGGTTCTACCAACTACAG 58.975 47.826 0.00 0.00 41.02 2.74
6697 6987 6.484643 GCATATGCTAAGAATCTTCTTGACCA 59.515 38.462 20.64 8.95 46.34 4.02
6709 6999 1.081174 TCTTGACCATCTCCTCCCCTT 59.919 52.381 0.00 0.00 0.00 3.95
6710 7000 2.317900 TCTTGACCATCTCCTCCCCTTA 59.682 50.000 0.00 0.00 0.00 2.69
6713 7003 0.760945 ACCATCTCCTCCCCTTAGCG 60.761 60.000 0.00 0.00 0.00 4.26
6720 7010 1.335132 CCTCCCCTTAGCGTGCCTTA 61.335 60.000 0.00 0.00 0.00 2.69
6726 7016 2.224305 CCCTTAGCGTGCCTTATAAGCT 60.224 50.000 6.99 4.33 41.45 3.74
6727 7017 3.006537 CCCTTAGCGTGCCTTATAAGCTA 59.993 47.826 6.99 3.36 39.14 3.32
6731 7021 3.458189 AGCGTGCCTTATAAGCTAACAG 58.542 45.455 6.99 3.50 36.28 3.16
6732 7022 2.544267 GCGTGCCTTATAAGCTAACAGG 59.456 50.000 6.99 8.58 0.00 4.00
6756 7046 1.457303 GCTCACAGCTCACAACTAACG 59.543 52.381 0.00 0.00 38.45 3.18
6757 7047 2.061773 CTCACAGCTCACAACTAACGG 58.938 52.381 0.00 0.00 0.00 4.44
6768 7058 3.059868 CACAACTAACGGCACTGTTACAG 60.060 47.826 11.21 11.21 37.52 2.74
6769 7059 3.181473 ACAACTAACGGCACTGTTACAGA 60.181 43.478 20.07 0.00 35.18 3.41
6772 7062 2.831685 AACGGCACTGTTACAGATCA 57.168 45.000 20.07 0.00 35.18 2.92
6773 7063 2.080286 ACGGCACTGTTACAGATCAC 57.920 50.000 20.07 4.92 35.18 3.06
6782 7072 3.386486 TGTTACAGATCACAACGGTGTC 58.614 45.455 1.16 0.00 45.45 3.67
6790 7080 1.661617 TCACAACGGTGTCGACAAAAG 59.338 47.619 21.95 16.35 45.45 2.27
6798 7088 3.307782 CGGTGTCGACAAAAGTAACAGTT 59.692 43.478 21.95 0.00 39.00 3.16
6801 7091 5.291614 GGTGTCGACAAAAGTAACAGTTACA 59.708 40.000 21.95 0.64 38.60 2.41
6803 7093 5.521010 TGTCGACAAAAGTAACAGTTACAGG 59.479 40.000 22.81 12.31 38.60 4.00
6804 7094 5.750067 GTCGACAAAAGTAACAGTTACAGGA 59.250 40.000 22.81 8.09 38.60 3.86
6806 7096 6.817641 TCGACAAAAGTAACAGTTACAGGAAA 59.182 34.615 22.81 1.20 38.60 3.13
6807 7097 6.903479 CGACAAAAGTAACAGTTACAGGAAAC 59.097 38.462 22.81 10.50 38.60 2.78
6810 7103 4.677673 AGTAACAGTTACAGGAAACGGT 57.322 40.909 22.81 0.00 39.06 4.83
6819 7112 0.613260 CAGGAAACGGTGAGGATGGA 59.387 55.000 0.00 0.00 0.00 3.41
6831 7124 4.857251 GATGGAATCCGAGCCGTT 57.143 55.556 0.00 0.00 37.38 4.44
6835 7128 1.116308 TGGAATCCGAGCCGTTGATA 58.884 50.000 0.00 0.00 0.00 2.15
6841 7135 3.136009 TCCGAGCCGTTGATATCTCTA 57.864 47.619 3.98 0.00 0.00 2.43
6843 7137 2.414824 CCGAGCCGTTGATATCTCTAGC 60.415 54.545 3.98 2.59 0.00 3.42
6845 7139 1.068194 AGCCGTTGATATCTCTAGCGC 60.068 52.381 0.00 0.00 0.00 5.92
6852 7146 5.618863 CGTTGATATCTCTAGCGCTCATCTT 60.619 44.000 16.34 0.00 0.00 2.40
6861 7155 2.508891 CGCTCATCTTGACCGTCGC 61.509 63.158 0.00 0.00 0.00 5.19
6863 7157 0.737715 GCTCATCTTGACCGTCGCTT 60.738 55.000 0.00 0.00 0.00 4.68
6864 7158 1.272781 CTCATCTTGACCGTCGCTTC 58.727 55.000 0.00 0.00 0.00 3.86
6871 7165 0.888619 TGACCGTCGCTTCTCTGAAT 59.111 50.000 0.00 0.00 0.00 2.57
6872 7166 1.135373 TGACCGTCGCTTCTCTGAATC 60.135 52.381 0.00 0.00 0.00 2.52
6874 7168 1.546476 ACCGTCGCTTCTCTGAATCTT 59.454 47.619 0.00 0.00 0.00 2.40
6875 7169 2.189342 CCGTCGCTTCTCTGAATCTTC 58.811 52.381 0.00 0.00 0.00 2.87
6880 7174 2.928757 CGCTTCTCTGAATCTTCTGTGG 59.071 50.000 0.00 0.00 0.00 4.17
6881 7175 2.677337 GCTTCTCTGAATCTTCTGTGGC 59.323 50.000 0.00 0.00 0.00 5.01
6885 7180 1.348696 TCTGAATCTTCTGTGGCTGCA 59.651 47.619 0.50 0.00 0.00 4.41
6888 7183 2.026542 TGAATCTTCTGTGGCTGCATCT 60.027 45.455 0.50 0.00 0.00 2.90
6901 7196 3.254060 GCTGCATCTCTTCGTCAGTAAA 58.746 45.455 0.00 0.00 0.00 2.01
6906 7201 4.796312 GCATCTCTTCGTCAGTAAACTCTC 59.204 45.833 0.00 0.00 0.00 3.20
6950 7245 1.766143 GCCATGACGATCGCCTTGTC 61.766 60.000 16.60 5.30 38.58 3.18
6972 7267 0.586319 CGAGGCGAAAAAGCTTGTGA 59.414 50.000 0.00 0.00 37.29 3.58
6978 7273 1.001378 CGAAAAAGCTTGTGACCTGGG 60.001 52.381 0.00 0.00 0.00 4.45
6981 7276 2.683211 AAAGCTTGTGACCTGGGAAT 57.317 45.000 0.00 0.00 0.00 3.01
6984 7279 1.145738 AGCTTGTGACCTGGGAATGTT 59.854 47.619 0.00 0.00 0.00 2.71
6993 7288 2.965147 ACCTGGGAATGTTTTGTTGAGG 59.035 45.455 0.00 0.00 0.00 3.86
6998 7293 4.653341 TGGGAATGTTTTGTTGAGGAATGT 59.347 37.500 0.00 0.00 0.00 2.71
6999 7294 4.990426 GGGAATGTTTTGTTGAGGAATGTG 59.010 41.667 0.00 0.00 0.00 3.21
7002 7297 2.223688 TGTTTTGTTGAGGAATGTGGCG 60.224 45.455 0.00 0.00 0.00 5.69
7022 7317 1.952296 GTCCTCCCATGTTGCATCATC 59.048 52.381 7.31 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.692593 CACAAGACCTGATCATGAATGCA 59.307 43.478 0.00 0.00 30.31 3.96
15 16 1.730501 CGCACACAAGACCTGATCAT 58.269 50.000 0.00 0.00 0.00 2.45
53 54 0.858598 TCCTCCAACCTCCCTCCCTA 60.859 60.000 0.00 0.00 0.00 3.53
64 65 1.597461 CCCCTCGTCTTCCTCCAAC 59.403 63.158 0.00 0.00 0.00 3.77
76 77 4.530857 CGGTTAGCCAGCCCCTCG 62.531 72.222 0.00 0.00 34.09 4.63
115 120 3.136750 CATCCTGCCTCTCCTCCG 58.863 66.667 0.00 0.00 0.00 4.63
116 121 1.765657 AGCATCCTGCCTCTCCTCC 60.766 63.158 0.00 0.00 46.52 4.30
117 122 1.446791 CAGCATCCTGCCTCTCCTC 59.553 63.158 0.00 0.00 46.52 3.71
147 152 2.094659 CCACGAGTAGGCGTTGCTG 61.095 63.158 0.00 0.00 43.59 4.41
233 238 1.082104 GTTGGCGCAACGAAGAAGG 60.082 57.895 10.83 0.00 34.63 3.46
241 246 0.306533 CGTATATGGGTTGGCGCAAC 59.693 55.000 10.83 11.86 42.89 4.17
242 247 1.440938 GCGTATATGGGTTGGCGCAA 61.441 55.000 10.83 0.00 43.62 4.85
243 248 1.890041 GCGTATATGGGTTGGCGCA 60.890 57.895 10.83 0.00 43.62 6.09
244 249 2.943653 GCGTATATGGGTTGGCGC 59.056 61.111 0.00 0.00 38.15 6.53
248 253 1.271379 TCTAGGCGCGTATATGGGTTG 59.729 52.381 10.66 0.00 0.00 3.77
249 254 1.624336 TCTAGGCGCGTATATGGGTT 58.376 50.000 10.66 2.95 0.00 4.11
274 280 0.679002 AAGATGTGCCGAGCAAGCAT 60.679 50.000 0.00 1.69 43.29 3.79
283 289 5.799936 ACGAAAAATAATCAAAGATGTGCCG 59.200 36.000 0.00 0.00 0.00 5.69
298 304 5.066634 TGCAAACTTCTGACCACGAAAAATA 59.933 36.000 0.00 0.00 0.00 1.40
304 310 1.872952 CATGCAAACTTCTGACCACGA 59.127 47.619 0.00 0.00 0.00 4.35
306 312 1.610522 AGCATGCAAACTTCTGACCAC 59.389 47.619 21.98 0.00 0.00 4.16
354 360 5.479306 AGCAACTGACTATACACGAAATGT 58.521 37.500 0.00 0.00 46.06 2.71
363 369 7.545362 ACATTCATGAAGCAACTGACTATAC 57.455 36.000 14.54 0.00 0.00 1.47
367 373 6.175471 TGATACATTCATGAAGCAACTGACT 58.825 36.000 14.54 0.46 0.00 3.41
384 390 5.704515 GCTGCAACTAGATTCCATGATACAT 59.295 40.000 0.00 0.00 0.00 2.29
388 394 4.160642 TGCTGCAACTAGATTCCATGAT 57.839 40.909 0.00 0.00 0.00 2.45
413 419 5.651576 TCAGAATGGCAATGCAAAGTACATA 59.348 36.000 7.79 0.00 36.16 2.29
418 424 3.308438 GTCAGAATGGCAATGCAAAGT 57.692 42.857 7.79 0.00 43.01 2.66
428 434 2.622942 TGTGTTTCTTGGTCAGAATGGC 59.377 45.455 0.00 0.00 41.42 4.40
434 440 4.763793 AGAATCCATGTGTTTCTTGGTCAG 59.236 41.667 0.00 0.00 40.77 3.51
437 444 4.473444 ACAGAATCCATGTGTTTCTTGGT 58.527 39.130 0.00 0.00 40.77 3.67
451 458 9.378551 TGTAGTGTGTATTTCATTACAGAATCC 57.621 33.333 0.00 0.00 34.68 3.01
456 463 9.371136 AGTGATGTAGTGTGTATTTCATTACAG 57.629 33.333 0.00 0.00 39.80 2.74
471 478 3.667497 ACACCTCACAGTGATGTAGTG 57.333 47.619 10.80 13.93 40.34 2.74
485 492 7.305474 CCATACACAAGTTTCATAAACACCTC 58.695 38.462 5.42 0.00 43.79 3.85
491 498 6.150976 CCTGAGCCATACACAAGTTTCATAAA 59.849 38.462 0.00 0.00 0.00 1.40
493 500 5.185454 CCTGAGCCATACACAAGTTTCATA 58.815 41.667 0.00 0.00 0.00 2.15
503 510 2.168521 TCTGCTAACCTGAGCCATACAC 59.831 50.000 0.00 0.00 42.11 2.90
554 561 4.221041 GCTATCAACTAGTGAGATACCCCC 59.779 50.000 12.07 2.06 40.43 5.40
555 562 4.833380 TGCTATCAACTAGTGAGATACCCC 59.167 45.833 12.07 6.67 40.43 4.95
556 563 6.406692 TTGCTATCAACTAGTGAGATACCC 57.593 41.667 12.07 8.37 40.43 3.69
557 564 7.717568 TCTTTGCTATCAACTAGTGAGATACC 58.282 38.462 12.07 8.30 40.43 2.73
560 567 9.926158 CATATCTTTGCTATCAACTAGTGAGAT 57.074 33.333 13.68 13.68 40.43 2.75
561 568 8.918116 ACATATCTTTGCTATCAACTAGTGAGA 58.082 33.333 0.00 0.00 40.43 3.27
562 569 8.976471 CACATATCTTTGCTATCAACTAGTGAG 58.024 37.037 0.00 0.00 40.43 3.51
563 570 7.928167 CCACATATCTTTGCTATCAACTAGTGA 59.072 37.037 0.00 0.00 41.67 3.41
564 571 7.712639 ACCACATATCTTTGCTATCAACTAGTG 59.287 37.037 0.00 0.00 30.75 2.74
565 572 7.712639 CACCACATATCTTTGCTATCAACTAGT 59.287 37.037 0.00 0.00 30.75 2.57
566 573 7.928167 TCACCACATATCTTTGCTATCAACTAG 59.072 37.037 0.00 0.00 30.75 2.57
567 574 7.791029 TCACCACATATCTTTGCTATCAACTA 58.209 34.615 0.00 0.00 30.75 2.24
568 575 6.653020 TCACCACATATCTTTGCTATCAACT 58.347 36.000 0.00 0.00 30.75 3.16
574 581 6.095300 CCAAACATCACCACATATCTTTGCTA 59.905 38.462 0.00 0.00 0.00 3.49
577 584 6.072008 TGACCAAACATCACCACATATCTTTG 60.072 38.462 0.00 0.00 0.00 2.77
589 596 2.163818 TCCGAGTGACCAAACATCAC 57.836 50.000 0.00 0.00 45.70 3.06
637 644 8.890472 TGAGGGGATTTAACTGTATATATGCTT 58.110 33.333 2.37 0.00 0.00 3.91
670 678 1.306148 CAGCTCGAATGGTGCATCAT 58.694 50.000 6.64 6.64 37.60 2.45
685 693 7.093814 TGCCTATGTTTTTAATCATGAACAGCT 60.094 33.333 0.00 0.00 35.69 4.24
715 723 9.512435 GCTCGTACACTTAATTTCTGTAGAATA 57.488 33.333 0.00 0.00 33.54 1.75
716 724 7.220300 CGCTCGTACACTTAATTTCTGTAGAAT 59.780 37.037 0.00 0.00 33.54 2.40
717 725 6.525628 CGCTCGTACACTTAATTTCTGTAGAA 59.474 38.462 0.00 0.00 0.00 2.10
718 726 6.025896 CGCTCGTACACTTAATTTCTGTAGA 58.974 40.000 0.00 0.00 0.00 2.59
719 727 5.229469 CCGCTCGTACACTTAATTTCTGTAG 59.771 44.000 0.00 0.00 0.00 2.74
735 743 0.320073 CCAAGTGGTTTCCGCTCGTA 60.320 55.000 2.27 0.00 44.35 3.43
738 746 2.396590 TATCCAAGTGGTTTCCGCTC 57.603 50.000 2.27 0.00 44.35 5.03
742 750 3.699538 GGGTTGATATCCAAGTGGTTTCC 59.300 47.826 0.00 0.00 35.03 3.13
758 766 3.068873 GCAGTTAATTGGTGTTGGGTTGA 59.931 43.478 0.00 0.00 0.00 3.18
770 778 3.383620 TGGCACCAAAGCAGTTAATTG 57.616 42.857 0.00 0.00 35.83 2.32
771 779 3.133721 TGTTGGCACCAAAGCAGTTAATT 59.866 39.130 3.10 0.00 37.70 1.40
772 780 2.697751 TGTTGGCACCAAAGCAGTTAAT 59.302 40.909 3.10 0.00 37.70 1.40
773 781 2.103373 TGTTGGCACCAAAGCAGTTAA 58.897 42.857 3.10 0.00 37.70 2.01
774 782 1.769026 TGTTGGCACCAAAGCAGTTA 58.231 45.000 3.10 0.00 37.70 2.24
775 783 1.122227 ATGTTGGCACCAAAGCAGTT 58.878 45.000 3.10 0.00 37.70 3.16
787 795 6.998673 AGTACCCTGATTAAAGATATGTTGGC 59.001 38.462 0.00 0.00 0.00 4.52
807 815 7.859325 TGCTTAAAGGATGTTTCATAGTACC 57.141 36.000 0.00 0.00 0.00 3.34
822 830 7.662604 AGAATTGCTGAAATTTGCTTAAAGG 57.337 32.000 0.00 0.00 38.64 3.11
864 872 4.339872 AAAGGCAATTGCTCACAATCAA 57.660 36.364 28.42 0.00 45.90 2.57
868 876 4.558178 CATGTAAAGGCAATTGCTCACAA 58.442 39.130 28.42 11.72 41.70 3.33
870 878 2.925563 GCATGTAAAGGCAATTGCTCAC 59.074 45.455 28.42 19.74 41.70 3.51
874 882 2.276472 TCGCATGTAAAGGCAATTGC 57.724 45.000 22.47 22.47 41.14 3.56
878 886 3.128589 GGAGAAATCGCATGTAAAGGCAA 59.871 43.478 0.00 0.00 0.00 4.52
880 888 2.682856 TGGAGAAATCGCATGTAAAGGC 59.317 45.455 0.00 0.00 0.00 4.35
881 889 4.963276 TTGGAGAAATCGCATGTAAAGG 57.037 40.909 0.00 0.00 0.00 3.11
903 911 8.848182 ACCACAATGCAATTCAACATTATTTTT 58.152 25.926 0.00 0.00 34.80 1.94
910 918 4.339872 ACACCACAATGCAATTCAACAT 57.660 36.364 0.00 0.00 31.22 2.71
911 919 3.815856 ACACCACAATGCAATTCAACA 57.184 38.095 0.00 0.00 31.22 3.33
922 930 7.759489 AACATGTATTCAGTTACACCACAAT 57.241 32.000 0.00 0.00 35.04 2.71
923 931 7.094975 GCTAACATGTATTCAGTTACACCACAA 60.095 37.037 0.00 0.00 35.04 3.33
927 935 6.594159 AGTGCTAACATGTATTCAGTTACACC 59.406 38.462 0.00 0.00 35.04 4.16
928 936 7.596749 AGTGCTAACATGTATTCAGTTACAC 57.403 36.000 0.00 0.00 35.04 2.90
942 950 7.705325 CGACCAAAAGTATAGTAGTGCTAACAT 59.295 37.037 0.00 0.00 32.72 2.71
959 968 0.109132 GCTCAATGCCCGACCAAAAG 60.109 55.000 0.00 0.00 35.15 2.27
969 981 3.004171 TCAAATGCAATTGCTCAATGCC 58.996 40.909 29.37 0.24 42.66 4.40
970 982 4.587306 CATCAAATGCAATTGCTCAATGC 58.413 39.130 29.37 4.03 42.66 3.56
985 997 4.392047 TCTTCCATATCTGCGCATCAAAT 58.608 39.130 12.24 5.22 0.00 2.32
993 1005 3.511540 TGACCCTATCTTCCATATCTGCG 59.488 47.826 0.00 0.00 0.00 5.18
1008 1020 4.721776 AGTAAGAGGATGCATTTGACCCTA 59.278 41.667 0.00 0.00 0.00 3.53
1017 1029 3.387962 TCCAAGGAGTAAGAGGATGCAT 58.612 45.455 0.00 0.00 0.00 3.96
1035 1047 3.368843 CGAAAGAATCTGCTTCCTCTCCA 60.369 47.826 0.00 0.00 34.11 3.86
1233 1245 3.243367 GGAGACTGTCATCATCCTCTTCG 60.243 52.174 10.88 0.00 0.00 3.79
1242 1254 1.066858 GCTTTCGGGAGACTGTCATCA 60.067 52.381 10.88 0.00 39.59 3.07
1260 1272 1.369091 GATCAACCGCCGTGAATGCT 61.369 55.000 0.00 0.00 0.00 3.79
1263 1275 0.462047 GAGGATCAACCGCCGTGAAT 60.462 55.000 0.00 0.00 44.74 2.57
1270 1282 2.287103 GGATTTTACGAGGATCAACCGC 59.713 50.000 0.00 0.00 44.74 5.68
1296 1308 2.610859 AGCCCCTCCACCGTTGAT 60.611 61.111 0.00 0.00 0.00 2.57
1377 1389 1.160137 GCGCATTCTCCTTGTTGACT 58.840 50.000 0.30 0.00 0.00 3.41
1379 1391 1.603456 TTGCGCATTCTCCTTGTTGA 58.397 45.000 12.75 0.00 0.00 3.18
1515 1527 2.745821 GCAGACTTCTTCATGCATGTCA 59.254 45.455 25.43 13.03 38.54 3.58
1566 1578 3.118665 TCGCCTCATCATCTTCAATCACA 60.119 43.478 0.00 0.00 0.00 3.58
1572 1584 1.068281 GCTCTCGCCTCATCATCTTCA 59.932 52.381 0.00 0.00 0.00 3.02
1587 1599 1.925847 CTCGCTGTCATCAAAGCTCTC 59.074 52.381 0.00 0.00 37.27 3.20
1607 1619 4.378459 CGTCTTCACAAGATTTAAGGGCAC 60.378 45.833 0.00 0.00 40.18 5.01
1660 1672 1.129998 CATTGCTTGGCTGAACGAGAG 59.870 52.381 0.00 0.00 0.00 3.20
1662 1674 0.169672 CCATTGCTTGGCTGAACGAG 59.830 55.000 0.00 0.00 39.09 4.18
1725 1737 6.921857 GGAATTTACCATGCTCTTTCATGATG 59.078 38.462 0.00 0.00 44.94 3.07
1752 1764 6.237861 CGTAAAGAGAATTTCCTGAATCCGAC 60.238 42.308 0.00 0.00 0.00 4.79
1799 1811 6.015856 AGAGTACAGATCATCCATCTTAACGG 60.016 42.308 0.00 0.00 40.20 4.44
1848 1860 9.373450 TCCTTGATCTTATCTACTATTGCTTCT 57.627 33.333 0.00 0.00 0.00 2.85
2050 2062 3.402628 ACCACTGTTTACTACTGCCTG 57.597 47.619 0.00 0.00 0.00 4.85
2063 2075 3.576078 TCAATTCACCTGAACCACTGT 57.424 42.857 0.00 0.00 36.80 3.55
2070 2082 4.828939 AGCTTGTCATTCAATTCACCTGAA 59.171 37.500 0.00 0.00 37.22 3.02
2154 2166 7.377131 GCGAAATTTGAATAGACTATGCTTTCC 59.623 37.037 0.00 0.00 0.00 3.13
2199 2211 8.615878 ACTGCAATAAGTCTGTAATACAACAA 57.384 30.769 0.00 0.00 0.00 2.83
2353 2365 2.489329 CCATGTCAGGCTTTGTTGTAGG 59.511 50.000 0.00 0.00 0.00 3.18
2522 2534 5.221048 GCTGTTTCCTTATTTACCGATGCAT 60.221 40.000 0.00 0.00 0.00 3.96
2564 2576 4.627467 CAGTAAGAGGTGTCTGCAACATAC 59.373 45.833 5.26 4.27 40.80 2.39
2575 2587 1.717032 TGGTGCTCAGTAAGAGGTGT 58.283 50.000 0.00 0.00 44.86 4.16
2635 2647 3.605749 ATGGTTCGGTGTCAGCGGG 62.606 63.158 23.06 0.00 39.89 6.13
2694 2706 6.096001 CAGGCTTTCTTGTAGCTTTATCCATT 59.904 38.462 0.00 0.00 38.67 3.16
2775 2787 4.950050 AACAGTTAGACTGGTGAGAGTTG 58.050 43.478 12.24 0.00 45.96 3.16
2898 2910 6.523840 TGCATTTTCAGCTGTTTCCTTATTT 58.476 32.000 14.67 0.00 0.00 1.40
2924 2936 5.985530 TGCAACATATCTGTAGTATCACTGC 59.014 40.000 0.00 0.00 33.36 4.40
2927 2939 7.168302 GTGACTGCAACATATCTGTAGTATCAC 59.832 40.741 5.39 6.77 39.47 3.06
2972 2984 2.560542 GTCATTGTGGGCACATAACCAA 59.439 45.455 0.00 0.00 41.52 3.67
3011 3023 0.976641 AGATGGTTTGGAGTCAGCGA 59.023 50.000 0.00 0.00 0.00 4.93
3019 3031 1.133513 ACACTTGCCAGATGGTTTGGA 60.134 47.619 0.00 0.00 37.96 3.53
3022 3034 2.363306 TCACACTTGCCAGATGGTTT 57.637 45.000 0.00 0.00 37.57 3.27
3127 3139 4.463539 AGCACTGATGATAGCTATCTCTGG 59.536 45.833 29.20 19.77 35.19 3.86
3187 3199 2.471862 GCAGCTGCAAAGCTAGATTC 57.528 50.000 33.36 0.00 44.30 2.52
3268 3280 7.303998 GCTCCATGATTATATTTCACTTCTGC 58.696 38.462 0.00 0.00 0.00 4.26
3330 3342 2.176045 TCTACCGAACCTTGCTCATGA 58.824 47.619 0.00 0.00 0.00 3.07
3377 3389 0.762842 TAGGTCGTGATCCCATGGGG 60.763 60.000 30.93 14.28 46.11 4.96
3425 3437 5.268544 CAAAAATGCTATGATCCACTGTCG 58.731 41.667 0.00 0.00 0.00 4.35
3434 3446 3.385755 GTGGCCTCCAAAAATGCTATGAT 59.614 43.478 3.32 0.00 34.18 2.45
3443 3455 1.760029 GTTCCAAGTGGCCTCCAAAAA 59.240 47.619 3.32 0.00 34.18 1.94
3458 3470 9.383519 GTTCTTCTATGTTCATATCTTGTTCCA 57.616 33.333 0.00 0.00 0.00 3.53
3459 3471 8.543774 CGTTCTTCTATGTTCATATCTTGTTCC 58.456 37.037 0.00 0.00 0.00 3.62
3582 3594 4.164796 TCTTGGAGTCCACTCATATGCAAT 59.835 41.667 12.69 0.00 44.60 3.56
3587 3599 5.026121 TCTTGTCTTGGAGTCCACTCATAT 58.974 41.667 12.69 0.00 44.60 1.78
3610 3622 6.174760 TGCACTCGGTTAATAGTACCATTTT 58.825 36.000 0.00 0.00 35.31 1.82
3637 3649 8.558973 TGAGGATCTTCTTCTGATTCTTTTTC 57.441 34.615 6.38 0.00 30.43 2.29
3698 3710 5.953571 AGTTACTGGAAAAGTCAGGGAATT 58.046 37.500 0.00 0.00 40.56 2.17
3708 3720 5.552178 ACTAGCTCCAAGTTACTGGAAAAG 58.448 41.667 0.00 5.64 44.97 2.27
3710 3722 6.675413 TTACTAGCTCCAAGTTACTGGAAA 57.325 37.500 0.00 0.00 44.97 3.13
3712 3724 5.541101 TGTTTACTAGCTCCAAGTTACTGGA 59.459 40.000 0.00 0.00 43.45 3.86
3731 3743 2.954989 TGCCTGTTGTCATTGCTGTTTA 59.045 40.909 0.00 0.00 0.00 2.01
3737 3749 1.080298 GGCTGCCTGTTGTCATTGC 60.080 57.895 12.43 0.00 0.00 3.56
3771 3783 6.071221 TGTCATGCTTTTCTGCCATAATTTCT 60.071 34.615 0.00 0.00 0.00 2.52
3800 3812 3.561960 CCACAAATCCTCTGAATCACCCA 60.562 47.826 0.00 0.00 0.00 4.51
3801 3813 3.019564 CCACAAATCCTCTGAATCACCC 58.980 50.000 0.00 0.00 0.00 4.61
3837 3849 4.855937 GCAACTGCAAAGCTAGATTTTCTC 59.144 41.667 2.53 0.00 41.59 2.87
3857 3869 4.698304 CCTTCTCCTTATTTACCGTTGCAA 59.302 41.667 0.00 0.00 0.00 4.08
3864 3876 7.646548 ATTTTCTGCCTTCTCCTTATTTACC 57.353 36.000 0.00 0.00 0.00 2.85
3889 3901 6.150307 TGTTCACCAAATGCGTAATTGTCTAT 59.850 34.615 0.59 0.00 0.00 1.98
3890 3902 5.470437 TGTTCACCAAATGCGTAATTGTCTA 59.530 36.000 0.59 0.00 0.00 2.59
3898 3910 5.690997 TTGTTATGTTCACCAAATGCGTA 57.309 34.783 0.00 0.00 0.00 4.42
3900 3912 4.326817 CCATTGTTATGTTCACCAAATGCG 59.673 41.667 0.00 0.00 0.00 4.73
3926 3977 2.512692 AACATAGGGTTGCATGCTGA 57.487 45.000 20.33 4.61 38.60 4.26
4019 4070 3.849911 TGCTTGTCATCCTCTAACTTCG 58.150 45.455 0.00 0.00 0.00 3.79
4025 4076 5.682234 TGAATCTTGCTTGTCATCCTCTA 57.318 39.130 0.00 0.00 0.00 2.43
4032 4083 4.320714 GCTGTTGATGAATCTTGCTTGTCA 60.321 41.667 0.00 0.00 0.00 3.58
4059 4110 2.109774 TGGCCTTTGGAAATGCTATGG 58.890 47.619 3.32 0.00 31.39 2.74
4082 4133 6.236409 TCTGCTTTCTTCATCTCTTGTTCAT 58.764 36.000 0.00 0.00 0.00 2.57
4083 4134 5.614308 TCTGCTTTCTTCATCTCTTGTTCA 58.386 37.500 0.00 0.00 0.00 3.18
4120 4171 4.669206 TTGAATTTTCAGTGCCATGTGT 57.331 36.364 0.00 0.00 38.61 3.72
4127 4178 3.681417 GCCAGGAATTGAATTTTCAGTGC 59.319 43.478 0.00 0.00 38.61 4.40
4157 4208 6.054941 TCTTGATCTCTAACAACAACAGCAA 58.945 36.000 0.00 0.00 0.00 3.91
4158 4209 5.610398 TCTTGATCTCTAACAACAACAGCA 58.390 37.500 0.00 0.00 0.00 4.41
4443 4494 5.892686 TGTATTCATTTGATGGCCATTCTGA 59.107 36.000 21.84 16.52 0.00 3.27
4533 4587 4.805609 GCACTTTCTCTCCTTTGATGACCT 60.806 45.833 0.00 0.00 0.00 3.85
4549 4603 4.378874 CCTCGAAATGGAAGAAGCACTTTC 60.379 45.833 0.00 0.00 39.13 2.62
4563 4617 9.823098 GAATTCTTCATGATTATCCTCGAAATG 57.177 33.333 0.00 0.00 0.00 2.32
4596 4650 5.946298 TGTGATGCATCATCTTTGTTCTTC 58.054 37.500 30.89 14.41 41.06 2.87
4632 4686 3.432186 CCATACCGATTCTTTCTGCCTGA 60.432 47.826 0.00 0.00 0.00 3.86
4633 4687 2.874701 CCATACCGATTCTTTCTGCCTG 59.125 50.000 0.00 0.00 0.00 4.85
4636 4690 2.614057 CACCCATACCGATTCTTTCTGC 59.386 50.000 0.00 0.00 0.00 4.26
4821 4875 2.011947 CGCTTGCCAATCTCTGATTGA 58.988 47.619 18.46 0.88 0.00 2.57
4856 4910 1.172812 ACCGCTGTTTTCCTTGAGCC 61.173 55.000 0.00 0.00 0.00 4.70
4892 4946 0.884704 TTCGGGTTCAGCTTCTGCAC 60.885 55.000 0.00 0.00 42.74 4.57
4930 4984 5.309323 TGCATTTCAATCTTAAGTTCCCG 57.691 39.130 1.63 0.00 0.00 5.14
5013 5067 5.428253 TGGATTTCCTCTTGTATACTGCAC 58.572 41.667 4.17 0.00 36.82 4.57
5017 5071 4.721776 TGCCTGGATTTCCTCTTGTATACT 59.278 41.667 4.17 0.00 36.82 2.12
5076 5130 4.735578 GCAGCATGGTATGAAGTGAATTGG 60.736 45.833 0.00 0.00 35.86 3.16
5187 5241 6.311690 GGATCTTTTCGACTTCTTCTTGTAGG 59.688 42.308 0.00 0.00 0.00 3.18
5200 5254 3.074412 TCTTTGCCAGGATCTTTTCGAC 58.926 45.455 0.00 0.00 0.00 4.20
5344 5398 0.032130 GCTGGATTCATGCATGCCAG 59.968 55.000 31.79 31.79 46.82 4.85
5361 5415 2.366916 ACTGTACTGCTTCTGAAGTGCT 59.633 45.455 17.97 4.15 35.73 4.40
5463 5521 5.049405 CACCAACTCATAGGAAGAACAACAC 60.049 44.000 0.00 0.00 0.00 3.32
5485 5543 2.182825 CGATACAGCGTGTTAGTCCAC 58.817 52.381 0.00 0.00 0.00 4.02
5531 5592 1.398390 GGCTCCGTGTGTGATGAATTC 59.602 52.381 0.00 0.00 0.00 2.17
5568 5629 2.655090 TTCAGGTCATGTTTGCCTCA 57.345 45.000 0.00 0.00 30.09 3.86
5576 5637 7.448420 CCTGATAGTCATATTTCAGGTCATGT 58.552 38.462 9.20 0.00 46.64 3.21
5594 5655 7.492524 TGAAGCTGTCTAATACAACCTGATAG 58.507 38.462 0.00 0.00 37.74 2.08
5608 5669 2.040278 AGCCCAACAATGAAGCTGTCTA 59.960 45.455 0.00 0.00 35.47 2.59
5625 5686 3.597255 GTGAGAACCTTGTAGTTAGCCC 58.403 50.000 0.00 0.00 0.00 5.19
5647 5708 5.998363 CCCTAGTTTCTCCACTAAATATGCC 59.002 44.000 0.00 0.00 0.00 4.40
5657 5718 7.226918 GCTAAATGTAATCCCTAGTTTCTCCAC 59.773 40.741 0.00 0.00 0.00 4.02
5658 5719 7.127339 AGCTAAATGTAATCCCTAGTTTCTCCA 59.873 37.037 0.00 0.00 0.00 3.86
5839 5926 2.202171 GGAATGCGCGTGTTGTCG 60.202 61.111 8.43 0.00 0.00 4.35
5848 5937 1.365699 TAAGAGGTTTCGGAATGCGC 58.634 50.000 0.00 0.00 0.00 6.09
5907 6038 1.776662 TCGTCCCGAGATGAAGGAAT 58.223 50.000 0.00 0.00 35.03 3.01
5920 6051 1.953686 CTCTTCTCTCTGGATCGTCCC 59.046 57.143 2.23 0.00 35.03 4.46
5928 6059 4.462483 GCTATATGTCCCTCTTCTCTCTGG 59.538 50.000 0.00 0.00 0.00 3.86
5929 6060 5.076182 TGCTATATGTCCCTCTTCTCTCTG 58.924 45.833 0.00 0.00 0.00 3.35
5933 6064 5.991933 TGATGCTATATGTCCCTCTTCTC 57.008 43.478 0.00 0.00 0.00 2.87
5969 6101 2.542595 CTGTACGTCTTTGCTCCGTTTT 59.457 45.455 0.00 0.00 36.12 2.43
5984 6116 4.397103 TGGTAAGGATCACTACACTGTACG 59.603 45.833 0.00 0.00 0.00 3.67
5986 6118 4.401519 GCTGGTAAGGATCACTACACTGTA 59.598 45.833 0.00 0.00 0.00 2.74
5987 6119 3.195825 GCTGGTAAGGATCACTACACTGT 59.804 47.826 0.00 0.00 0.00 3.55
5988 6120 3.449018 AGCTGGTAAGGATCACTACACTG 59.551 47.826 0.00 0.00 0.00 3.66
5990 6122 4.473477 AAGCTGGTAAGGATCACTACAC 57.527 45.455 0.00 0.00 0.00 2.90
5991 6123 4.323485 CCAAAGCTGGTAAGGATCACTACA 60.323 45.833 0.00 0.00 38.00 2.74
5992 6124 4.192317 CCAAAGCTGGTAAGGATCACTAC 58.808 47.826 0.00 0.00 38.00 2.73
6015 6147 0.378610 GCGGTGGCATAAGAAAGAGC 59.621 55.000 0.00 0.00 39.62 4.09
6049 6181 2.813908 GTTCGACGGAATGCGGCT 60.814 61.111 0.00 0.00 34.05 5.52
6092 6224 2.774809 AGGAGGAAGAGTAGAAATGGGC 59.225 50.000 0.00 0.00 0.00 5.36
6215 6348 3.866582 GTGCCCTCATCTCCCCCG 61.867 72.222 0.00 0.00 0.00 5.73
6217 6350 2.914289 CAGTGCCCTCATCTCCCC 59.086 66.667 0.00 0.00 0.00 4.81
6237 6370 1.446618 CCAATTCCAAAGCAGCGGC 60.447 57.895 0.00 0.00 41.61 6.53
6239 6372 1.135402 GGTACCAATTCCAAAGCAGCG 60.135 52.381 7.15 0.00 0.00 5.18
6241 6374 2.231235 GGTGGTACCAATTCCAAAGCAG 59.769 50.000 18.31 0.00 38.42 4.24
6242 6375 2.243810 GGTGGTACCAATTCCAAAGCA 58.756 47.619 18.31 0.00 38.42 3.91
6243 6376 1.201414 CGGTGGTACCAATTCCAAAGC 59.799 52.381 18.31 0.00 38.47 3.51
6245 6378 2.953284 TCGGTGGTACCAATTCCAAA 57.047 45.000 18.31 2.12 38.47 3.28
6247 6380 2.169769 GAGATCGGTGGTACCAATTCCA 59.830 50.000 18.31 5.50 38.47 3.53
6248 6381 2.434702 AGAGATCGGTGGTACCAATTCC 59.565 50.000 18.31 13.19 38.47 3.01
6249 6382 3.821421 AGAGATCGGTGGTACCAATTC 57.179 47.619 18.31 10.98 38.47 2.17
6250 6383 3.118371 GGAAGAGATCGGTGGTACCAATT 60.118 47.826 18.31 1.08 38.47 2.32
6251 6384 2.434702 GGAAGAGATCGGTGGTACCAAT 59.565 50.000 18.31 6.73 38.47 3.16
6252 6385 1.829222 GGAAGAGATCGGTGGTACCAA 59.171 52.381 18.31 0.60 38.47 3.67
6253 6386 1.481871 GGAAGAGATCGGTGGTACCA 58.518 55.000 11.60 11.60 38.47 3.25
6254 6387 0.751452 GGGAAGAGATCGGTGGTACC 59.249 60.000 4.43 4.43 34.05 3.34
6255 6388 1.481871 TGGGAAGAGATCGGTGGTAC 58.518 55.000 0.00 0.00 0.00 3.34
6256 6389 2.091278 AGATGGGAAGAGATCGGTGGTA 60.091 50.000 0.00 0.00 0.00 3.25
6257 6390 1.123928 GATGGGAAGAGATCGGTGGT 58.876 55.000 0.00 0.00 0.00 4.16
6258 6391 1.342819 GAGATGGGAAGAGATCGGTGG 59.657 57.143 0.00 0.00 0.00 4.61
6259 6392 1.342819 GGAGATGGGAAGAGATCGGTG 59.657 57.143 0.00 0.00 0.00 4.94
6260 6393 1.710816 GGAGATGGGAAGAGATCGGT 58.289 55.000 0.00 0.00 0.00 4.69
6261 6394 0.600557 CGGAGATGGGAAGAGATCGG 59.399 60.000 0.00 0.00 0.00 4.18
6262 6395 1.323412 ACGGAGATGGGAAGAGATCG 58.677 55.000 0.00 0.00 0.00 3.69
6263 6396 3.386402 AGAAACGGAGATGGGAAGAGATC 59.614 47.826 0.00 0.00 0.00 2.75
6264 6397 3.133721 CAGAAACGGAGATGGGAAGAGAT 59.866 47.826 0.00 0.00 0.00 2.75
6265 6398 2.497675 CAGAAACGGAGATGGGAAGAGA 59.502 50.000 0.00 0.00 0.00 3.10
6267 6400 2.257207 ACAGAAACGGAGATGGGAAGA 58.743 47.619 0.00 0.00 0.00 2.87
6282 6415 5.624344 AGATCGAACGAAACTCTACAGAA 57.376 39.130 0.12 0.00 0.00 3.02
6285 6418 5.048224 AGGAAAGATCGAACGAAACTCTACA 60.048 40.000 0.12 0.00 0.00 2.74
6303 6443 1.335506 GCGGAGATCGAGCTAGGAAAG 60.336 57.143 1.61 0.00 42.43 2.62
6345 6485 0.255890 AATTACGCCAGCCCATCAGT 59.744 50.000 0.00 0.00 0.00 3.41
6359 6499 3.242316 GGATCGCGGTTCTCACAAATTAC 60.242 47.826 6.13 0.00 0.00 1.89
6408 6552 2.993853 CTTGGGTCCTCTCCTGGC 59.006 66.667 0.00 0.00 0.00 4.85
6410 6554 1.920325 TGGCTTGGGTCCTCTCCTG 60.920 63.158 0.00 0.00 0.00 3.86
6425 6569 1.965754 ATCTTCAGAGGAGCCGTGGC 61.966 60.000 1.67 1.67 42.33 5.01
6426 6570 1.403814 TATCTTCAGAGGAGCCGTGG 58.596 55.000 0.00 0.00 0.00 4.94
6427 6571 2.428890 AGTTATCTTCAGAGGAGCCGTG 59.571 50.000 0.00 0.00 0.00 4.94
6428 6572 2.428890 CAGTTATCTTCAGAGGAGCCGT 59.571 50.000 0.00 0.00 0.00 5.68
6429 6573 2.690497 TCAGTTATCTTCAGAGGAGCCG 59.310 50.000 0.00 0.00 0.00 5.52
6430 6574 4.692228 CTTCAGTTATCTTCAGAGGAGCC 58.308 47.826 0.00 0.00 0.00 4.70
6434 6578 3.870419 GCTGCTTCAGTTATCTTCAGAGG 59.130 47.826 0.00 0.00 33.43 3.69
6435 6579 3.551082 CGCTGCTTCAGTTATCTTCAGAG 59.449 47.826 0.00 0.00 33.43 3.35
6436 6580 3.056536 ACGCTGCTTCAGTTATCTTCAGA 60.057 43.478 0.00 0.00 33.43 3.27
6437 6581 3.257393 ACGCTGCTTCAGTTATCTTCAG 58.743 45.455 0.00 0.00 33.43 3.02
6438 6582 3.254060 GACGCTGCTTCAGTTATCTTCA 58.746 45.455 0.77 0.00 33.43 3.02
6439 6583 2.280183 CGACGCTGCTTCAGTTATCTTC 59.720 50.000 6.94 0.00 33.43 2.87
6440 6584 2.094700 TCGACGCTGCTTCAGTTATCTT 60.095 45.455 6.94 0.00 33.43 2.40
6441 6585 1.472878 TCGACGCTGCTTCAGTTATCT 59.527 47.619 6.94 0.00 33.43 1.98
6442 6586 1.584308 GTCGACGCTGCTTCAGTTATC 59.416 52.381 0.00 0.00 33.43 1.75
6443 6587 1.630148 GTCGACGCTGCTTCAGTTAT 58.370 50.000 0.00 0.00 33.43 1.89
6444 6588 0.728129 CGTCGACGCTGCTTCAGTTA 60.728 55.000 26.59 0.00 33.43 2.24
6445 6589 2.016704 CGTCGACGCTGCTTCAGTT 61.017 57.895 26.59 0.00 33.43 3.16
6446 6590 2.402282 TTCGTCGACGCTGCTTCAGT 62.402 55.000 32.19 0.00 39.60 3.41
6447 6591 1.669158 CTTCGTCGACGCTGCTTCAG 61.669 60.000 32.19 14.27 39.60 3.02
6448 6592 1.729484 CTTCGTCGACGCTGCTTCA 60.729 57.895 32.19 11.25 39.60 3.02
6449 6593 3.060663 GCTTCGTCGACGCTGCTTC 62.061 63.158 31.98 17.26 39.60 3.86
6450 6594 3.106407 GCTTCGTCGACGCTGCTT 61.106 61.111 31.98 0.00 39.60 3.91
6451 6595 4.044484 AGCTTCGTCGACGCTGCT 62.044 61.111 34.45 34.45 35.85 4.24
6452 6596 3.832171 CAGCTTCGTCGACGCTGC 61.832 66.667 32.28 32.12 45.13 5.25
6454 6598 1.442857 CTTCAGCTTCGTCGACGCT 60.443 57.895 32.19 19.45 37.65 5.07
6455 6599 1.002250 TTCTTCAGCTTCGTCGACGC 61.002 55.000 32.19 18.79 39.60 5.19
6456 6600 0.978385 CTTCTTCAGCTTCGTCGACG 59.022 55.000 31.30 31.30 41.45 5.12
6457 6601 2.333389 TCTTCTTCAGCTTCGTCGAC 57.667 50.000 5.18 5.18 0.00 4.20
6458 6602 2.922758 GCTTCTTCTTCAGCTTCGTCGA 60.923 50.000 0.00 0.00 32.87 4.20
6459 6603 1.388431 GCTTCTTCTTCAGCTTCGTCG 59.612 52.381 0.00 0.00 32.87 5.12
6460 6604 2.408050 TGCTTCTTCTTCAGCTTCGTC 58.592 47.619 0.00 0.00 36.92 4.20
6461 6605 2.533266 TGCTTCTTCTTCAGCTTCGT 57.467 45.000 0.00 0.00 36.92 3.85
6462 6606 3.364764 CCTTTGCTTCTTCTTCAGCTTCG 60.365 47.826 0.00 0.00 36.92 3.79
6463 6607 3.567585 ACCTTTGCTTCTTCTTCAGCTTC 59.432 43.478 0.00 0.00 36.92 3.86
6464 6608 3.560105 ACCTTTGCTTCTTCTTCAGCTT 58.440 40.909 0.00 0.00 36.92 3.74
6465 6609 3.220674 ACCTTTGCTTCTTCTTCAGCT 57.779 42.857 0.00 0.00 36.92 4.24
6466 6610 3.316308 TGAACCTTTGCTTCTTCTTCAGC 59.684 43.478 0.00 0.00 36.49 4.26
6467 6611 4.818546 TCTGAACCTTTGCTTCTTCTTCAG 59.181 41.667 0.00 0.00 36.18 3.02
6468 6612 4.576463 GTCTGAACCTTTGCTTCTTCTTCA 59.424 41.667 0.00 0.00 0.00 3.02
6469 6613 4.576463 TGTCTGAACCTTTGCTTCTTCTTC 59.424 41.667 0.00 0.00 0.00 2.87
6470 6614 4.526970 TGTCTGAACCTTTGCTTCTTCTT 58.473 39.130 0.00 0.00 0.00 2.52
6471 6615 4.156455 TGTCTGAACCTTTGCTTCTTCT 57.844 40.909 0.00 0.00 0.00 2.85
6472 6616 4.791088 GCTTGTCTGAACCTTTGCTTCTTC 60.791 45.833 0.00 0.00 0.00 2.87
6473 6617 3.067320 GCTTGTCTGAACCTTTGCTTCTT 59.933 43.478 0.00 0.00 0.00 2.52
6474 6618 2.620585 GCTTGTCTGAACCTTTGCTTCT 59.379 45.455 0.00 0.00 0.00 2.85
6475 6619 2.358898 TGCTTGTCTGAACCTTTGCTTC 59.641 45.455 0.00 0.00 0.00 3.86
6476 6620 2.378038 TGCTTGTCTGAACCTTTGCTT 58.622 42.857 0.00 0.00 0.00 3.91
6477 6621 2.057137 TGCTTGTCTGAACCTTTGCT 57.943 45.000 0.00 0.00 0.00 3.91
6478 6622 2.463876 GTTGCTTGTCTGAACCTTTGC 58.536 47.619 0.00 0.00 0.00 3.68
6479 6623 2.541588 CCGTTGCTTGTCTGAACCTTTG 60.542 50.000 0.00 0.00 0.00 2.77
6480 6624 1.676006 CCGTTGCTTGTCTGAACCTTT 59.324 47.619 0.00 0.00 0.00 3.11
6481 6625 1.308998 CCGTTGCTTGTCTGAACCTT 58.691 50.000 0.00 0.00 0.00 3.50
6482 6626 1.166531 GCCGTTGCTTGTCTGAACCT 61.167 55.000 0.00 0.00 33.53 3.50
6483 6627 1.282875 GCCGTTGCTTGTCTGAACC 59.717 57.895 0.00 0.00 33.53 3.62
6484 6628 1.282875 GGCCGTTGCTTGTCTGAAC 59.717 57.895 0.00 0.00 37.74 3.18
6485 6629 1.896660 GGGCCGTTGCTTGTCTGAA 60.897 57.895 0.00 0.00 37.74 3.02
6486 6630 2.281484 GGGCCGTTGCTTGTCTGA 60.281 61.111 0.00 0.00 37.74 3.27
6487 6631 2.594303 TGGGCCGTTGCTTGTCTG 60.594 61.111 0.00 0.00 37.74 3.51
6488 6632 2.129555 ATCTGGGCCGTTGCTTGTCT 62.130 55.000 0.00 0.00 37.74 3.41
6489 6633 1.244019 AATCTGGGCCGTTGCTTGTC 61.244 55.000 0.00 0.00 37.74 3.18
6490 6634 1.228552 AATCTGGGCCGTTGCTTGT 60.229 52.632 0.00 0.00 37.74 3.16
6491 6635 1.213537 CAATCTGGGCCGTTGCTTG 59.786 57.895 0.00 0.00 37.74 4.01
6492 6636 2.639327 GCAATCTGGGCCGTTGCTT 61.639 57.895 24.82 4.54 43.56 3.91
6493 6637 3.064324 GCAATCTGGGCCGTTGCT 61.064 61.111 24.82 0.00 43.56 3.91
6494 6638 4.133796 GGCAATCTGGGCCGTTGC 62.134 66.667 24.37 24.37 45.54 4.17
6500 6644 1.452833 GTCCTCAGGCAATCTGGGC 60.453 63.158 0.00 0.00 42.63 5.36
6501 6645 0.179936 GAGTCCTCAGGCAATCTGGG 59.820 60.000 0.00 0.00 43.59 4.45
6502 6646 0.179089 CGAGTCCTCAGGCAATCTGG 60.179 60.000 0.00 0.00 43.53 3.86
6503 6647 0.534412 ACGAGTCCTCAGGCAATCTG 59.466 55.000 0.00 0.00 44.68 2.90
6504 6648 0.534412 CACGAGTCCTCAGGCAATCT 59.466 55.000 0.00 0.00 0.00 2.40
6505 6649 0.247736 ACACGAGTCCTCAGGCAATC 59.752 55.000 0.00 0.00 0.00 2.67
6506 6650 0.036952 CACACGAGTCCTCAGGCAAT 60.037 55.000 0.00 0.00 0.00 3.56
6507 6651 1.112916 TCACACGAGTCCTCAGGCAA 61.113 55.000 0.00 0.00 0.00 4.52
6508 6652 1.527433 CTCACACGAGTCCTCAGGCA 61.527 60.000 0.00 0.00 34.29 4.75
6509 6653 1.214062 CTCACACGAGTCCTCAGGC 59.786 63.158 0.00 0.00 34.29 4.85
6510 6654 0.609406 TCCTCACACGAGTCCTCAGG 60.609 60.000 0.00 0.00 37.59 3.86
6511 6655 0.523966 GTCCTCACACGAGTCCTCAG 59.476 60.000 0.00 0.00 37.59 3.35
6512 6656 0.894184 GGTCCTCACACGAGTCCTCA 60.894 60.000 0.00 0.00 37.59 3.86
6513 6657 0.894184 TGGTCCTCACACGAGTCCTC 60.894 60.000 0.00 0.00 37.59 3.71
6514 6658 0.469331 TTGGTCCTCACACGAGTCCT 60.469 55.000 0.00 0.00 37.59 3.85
6515 6659 0.391597 TTTGGTCCTCACACGAGTCC 59.608 55.000 0.00 0.00 37.59 3.85
6516 6660 2.457366 ATTTGGTCCTCACACGAGTC 57.543 50.000 0.00 0.00 37.59 3.36
6517 6661 2.930826 AATTTGGTCCTCACACGAGT 57.069 45.000 0.00 0.00 37.59 4.18
6518 6662 3.000727 GGTAATTTGGTCCTCACACGAG 58.999 50.000 0.00 0.00 39.16 4.18
6519 6663 2.369203 TGGTAATTTGGTCCTCACACGA 59.631 45.455 0.00 0.00 0.00 4.35
6520 6664 2.742053 CTGGTAATTTGGTCCTCACACG 59.258 50.000 0.00 0.00 0.00 4.49
6521 6665 4.015872 TCTGGTAATTTGGTCCTCACAC 57.984 45.455 0.00 0.00 0.00 3.82
6530 6674 2.817258 TCGCCTTGTTCTGGTAATTTGG 59.183 45.455 0.00 0.00 0.00 3.28
6535 6679 1.906574 AGGATCGCCTTGTTCTGGTAA 59.093 47.619 0.00 0.00 43.90 2.85
6547 6692 2.753296 CAAGAGATTGAGAGGATCGCC 58.247 52.381 0.00 0.00 42.67 5.54
6548 6693 2.134346 GCAAGAGATTGAGAGGATCGC 58.866 52.381 0.00 0.00 42.67 4.58
6554 6699 6.203145 CCACTGATAATGCAAGAGATTGAGAG 59.797 42.308 0.00 0.00 0.00 3.20
6557 6702 5.993055 TCCACTGATAATGCAAGAGATTGA 58.007 37.500 0.00 0.00 0.00 2.57
6559 6704 7.707624 TTTTCCACTGATAATGCAAGAGATT 57.292 32.000 0.00 0.00 0.00 2.40
6562 6707 6.680810 TGTTTTTCCACTGATAATGCAAGAG 58.319 36.000 0.00 0.00 0.00 2.85
6565 6710 6.403866 ACTGTTTTTCCACTGATAATGCAA 57.596 33.333 0.00 0.00 0.00 4.08
6567 6834 7.377766 TCTACTGTTTTTCCACTGATAATGC 57.622 36.000 0.00 0.00 0.00 3.56
6573 6840 8.846211 CCTAAATTTCTACTGTTTTTCCACTGA 58.154 33.333 0.00 0.00 0.00 3.41
6574 6841 8.082242 CCCTAAATTTCTACTGTTTTTCCACTG 58.918 37.037 0.00 0.00 0.00 3.66
6575 6842 8.002459 TCCCTAAATTTCTACTGTTTTTCCACT 58.998 33.333 0.00 0.00 0.00 4.00
6576 6843 8.173542 TCCCTAAATTTCTACTGTTTTTCCAC 57.826 34.615 0.00 0.00 0.00 4.02
6586 6853 8.053355 CCCAAGTTGTATCCCTAAATTTCTACT 58.947 37.037 1.45 0.00 0.00 2.57
6591 6858 6.160483 TCCCCAAGTTGTATCCCTAAATTT 57.840 37.500 1.45 0.00 0.00 1.82
6596 6863 5.630539 CGAAATTCCCCAAGTTGTATCCCTA 60.631 44.000 1.45 0.00 0.00 3.53
6599 6866 3.181490 GCGAAATTCCCCAAGTTGTATCC 60.181 47.826 1.45 0.00 0.00 2.59
6601 6868 2.422127 CGCGAAATTCCCCAAGTTGTAT 59.578 45.455 0.00 0.00 0.00 2.29
6607 6874 1.599542 GATCTCGCGAAATTCCCCAAG 59.400 52.381 11.33 0.00 0.00 3.61
6610 6877 1.202533 TCTGATCTCGCGAAATTCCCC 60.203 52.381 11.33 0.00 0.00 4.81
6613 6880 3.701241 AGTCTCTGATCTCGCGAAATTC 58.299 45.455 11.33 7.95 0.00 2.17
6618 6885 1.154814 CGGAGTCTCTGATCTCGCGA 61.155 60.000 9.26 9.26 31.38 5.87
6634 6902 1.214589 GCTAGCGAACCAAGTCGGA 59.785 57.895 0.00 0.00 41.40 4.55
6645 6935 1.213678 TGGTAGAACCCTAGCTAGCGA 59.786 52.381 15.74 2.55 42.33 4.93
6647 6937 3.032459 AGTTGGTAGAACCCTAGCTAGC 58.968 50.000 15.74 6.62 42.33 3.42
6672 6962 6.484643 TGGTCAAGAAGATTCTTAGCATATGC 59.515 38.462 20.36 20.36 45.23 3.14
6694 6984 0.760945 CGCTAAGGGGAGGAGATGGT 60.761 60.000 0.00 0.00 0.00 3.55
6695 6985 0.760945 ACGCTAAGGGGAGGAGATGG 60.761 60.000 0.00 0.00 0.00 3.51
6697 6987 1.403687 GCACGCTAAGGGGAGGAGAT 61.404 60.000 0.00 0.00 0.00 2.75
6709 6999 4.500887 CCTGTTAGCTTATAAGGCACGCTA 60.501 45.833 14.28 6.91 32.49 4.26
6710 7000 3.458189 CTGTTAGCTTATAAGGCACGCT 58.542 45.455 14.28 7.86 34.88 5.07
6713 7003 4.766375 TGTCCTGTTAGCTTATAAGGCAC 58.234 43.478 14.28 0.00 0.00 5.01
6726 7016 3.914984 GCTGTGAGCTGTCCTGTTA 57.085 52.632 0.00 0.00 38.45 2.41
6727 7017 4.787871 GCTGTGAGCTGTCCTGTT 57.212 55.556 0.00 0.00 38.45 3.16
6745 7035 2.319136 AACAGTGCCGTTAGTTGTGA 57.681 45.000 0.00 0.00 0.00 3.58
6746 7036 2.867368 TGTAACAGTGCCGTTAGTTGTG 59.133 45.455 0.00 0.00 32.15 3.33
6747 7037 3.128349 CTGTAACAGTGCCGTTAGTTGT 58.872 45.455 0.00 0.00 32.15 3.32
6748 7038 3.386486 TCTGTAACAGTGCCGTTAGTTG 58.614 45.455 0.00 0.00 32.15 3.16
6749 7039 3.738830 TCTGTAACAGTGCCGTTAGTT 57.261 42.857 0.00 0.00 32.15 2.24
6750 7040 3.257375 TGATCTGTAACAGTGCCGTTAGT 59.743 43.478 0.00 0.00 32.15 2.24
6752 7042 3.006003 TGTGATCTGTAACAGTGCCGTTA 59.994 43.478 0.00 0.00 32.61 3.18
6754 7044 1.343142 TGTGATCTGTAACAGTGCCGT 59.657 47.619 0.00 0.00 32.61 5.68
6755 7045 2.078849 TGTGATCTGTAACAGTGCCG 57.921 50.000 0.00 0.00 32.61 5.69
6756 7046 2.157668 CGTTGTGATCTGTAACAGTGCC 59.842 50.000 0.00 0.00 32.61 5.01
6757 7047 2.157668 CCGTTGTGATCTGTAACAGTGC 59.842 50.000 0.00 0.00 32.61 4.40
6768 7058 1.493772 TTGTCGACACCGTTGTGATC 58.506 50.000 19.90 0.00 45.76 2.92
6769 7059 1.942677 TTTGTCGACACCGTTGTGAT 58.057 45.000 19.90 0.00 45.76 3.06
6772 7062 1.729284 ACTTTTGTCGACACCGTTGT 58.271 45.000 19.90 10.10 39.32 3.32
6773 7063 3.062369 TGTTACTTTTGTCGACACCGTTG 59.938 43.478 19.90 9.46 37.05 4.10
6782 7072 6.592798 TTCCTGTAACTGTTACTTTTGTCG 57.407 37.500 25.91 9.70 37.06 4.35
6790 7080 4.370917 TCACCGTTTCCTGTAACTGTTAC 58.629 43.478 20.87 20.87 36.67 2.50
6798 7088 1.553248 CCATCCTCACCGTTTCCTGTA 59.447 52.381 0.00 0.00 0.00 2.74
6801 7091 1.358152 TTCCATCCTCACCGTTTCCT 58.642 50.000 0.00 0.00 0.00 3.36
6803 7093 2.289565 GGATTCCATCCTCACCGTTTC 58.710 52.381 0.00 0.00 46.19 2.78
6804 7094 2.420058 GGATTCCATCCTCACCGTTT 57.580 50.000 0.00 0.00 46.19 3.60
6819 7112 2.894126 AGAGATATCAACGGCTCGGATT 59.106 45.455 5.32 0.00 32.80 3.01
6823 7116 2.726373 CGCTAGAGATATCAACGGCTCG 60.726 54.545 5.32 0.00 32.80 5.03
6824 7117 2.857618 CGCTAGAGATATCAACGGCTC 58.142 52.381 5.32 0.00 0.00 4.70
6829 7122 5.309323 AGATGAGCGCTAGAGATATCAAC 57.691 43.478 11.50 0.00 0.00 3.18
6831 7124 5.006386 TCAAGATGAGCGCTAGAGATATCA 58.994 41.667 11.50 1.01 0.00 2.15
6835 7128 2.295909 GGTCAAGATGAGCGCTAGAGAT 59.704 50.000 11.50 0.00 35.04 2.75
6845 7139 1.135257 AGAAGCGACGGTCAAGATGAG 60.135 52.381 9.10 0.00 0.00 2.90
6852 7146 0.888619 ATTCAGAGAAGCGACGGTCA 59.111 50.000 9.10 0.00 0.00 4.02
6861 7155 3.933955 CAGCCACAGAAGATTCAGAGAAG 59.066 47.826 0.00 0.00 0.00 2.85
6863 7157 2.354503 GCAGCCACAGAAGATTCAGAGA 60.355 50.000 0.00 0.00 0.00 3.10
6864 7158 2.008329 GCAGCCACAGAAGATTCAGAG 58.992 52.381 0.00 0.00 0.00 3.35
6871 7165 1.273759 AGAGATGCAGCCACAGAAGA 58.726 50.000 0.00 0.00 0.00 2.87
6872 7166 2.008329 GAAGAGATGCAGCCACAGAAG 58.992 52.381 0.00 0.00 0.00 2.85
6874 7168 0.108472 CGAAGAGATGCAGCCACAGA 60.108 55.000 0.00 0.00 0.00 3.41
6875 7169 0.390866 ACGAAGAGATGCAGCCACAG 60.391 55.000 0.00 0.00 0.00 3.66
6880 7174 2.568696 TACTGACGAAGAGATGCAGC 57.431 50.000 0.00 0.00 0.00 5.25
6881 7175 4.489810 AGTTTACTGACGAAGAGATGCAG 58.510 43.478 0.00 0.00 0.00 4.41
6885 7180 4.095185 CCGAGAGTTTACTGACGAAGAGAT 59.905 45.833 0.00 0.00 0.00 2.75
6888 7183 2.095364 GCCGAGAGTTTACTGACGAAGA 60.095 50.000 0.00 0.00 0.00 2.87
6901 7196 2.120718 AGGACCCAAGCCGAGAGT 59.879 61.111 0.00 0.00 0.00 3.24
6906 7201 1.002134 ATTGTCAGGACCCAAGCCG 60.002 57.895 0.00 0.00 0.00 5.52
6950 7245 0.166814 CAAGCTTTTTCGCCTCGAGG 59.833 55.000 27.83 27.83 37.14 4.63
6972 7267 2.965147 CCTCAACAAAACATTCCCAGGT 59.035 45.455 0.00 0.00 0.00 4.00
6978 7273 4.448732 GCCACATTCCTCAACAAAACATTC 59.551 41.667 0.00 0.00 0.00 2.67
6981 7276 2.223688 CGCCACATTCCTCAACAAAACA 60.224 45.455 0.00 0.00 0.00 2.83
6984 7279 1.606668 GACGCCACATTCCTCAACAAA 59.393 47.619 0.00 0.00 0.00 2.83
6993 7288 1.097547 CATGGGAGGACGCCACATTC 61.098 60.000 0.00 0.00 0.00 2.67
6998 7293 2.350895 CAACATGGGAGGACGCCA 59.649 61.111 0.00 0.00 0.00 5.69
6999 7294 3.134127 GCAACATGGGAGGACGCC 61.134 66.667 0.00 0.00 0.00 5.68
7002 7297 1.952296 GATGATGCAACATGGGAGGAC 59.048 52.381 14.87 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.