Multiple sequence alignment - TraesCS1D01G053200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G053200 chr1D 100.000 2614 0 0 1 2614 34229433 34232046 0.000000e+00 4828
1 TraesCS1D01G053200 chr1D 97.196 2318 58 4 1 2312 419053263 419055579 0.000000e+00 3914
2 TraesCS1D01G053200 chr1D 97.705 305 7 0 2310 2614 293832975 293832671 2.300000e-145 525
3 TraesCS1D01G053200 chr7D 95.226 2325 74 10 1 2310 61669377 61667075 0.000000e+00 3644
4 TraesCS1D01G053200 chr7D 98.033 305 6 0 2310 2614 228956367 228956063 4.950000e-147 531
5 TraesCS1D01G053200 chr7D 97.712 306 6 1 2310 2614 218013346 218013041 2.300000e-145 525
6 TraesCS1D01G053200 chr5A 94.868 2319 85 11 1 2309 338458888 338456594 0.000000e+00 3592
7 TraesCS1D01G053200 chr5A 94.992 1837 80 8 1 1829 501189751 501187919 0.000000e+00 2872
8 TraesCS1D01G053200 chr4B 92.719 2321 139 16 1 2309 642268763 642271065 0.000000e+00 3323
9 TraesCS1D01G053200 chr3A 92.089 2326 139 23 1 2310 717429366 717431662 0.000000e+00 3234
10 TraesCS1D01G053200 chr7A 91.652 2348 151 15 1 2309 720224359 720222018 0.000000e+00 3208
11 TraesCS1D01G053200 chr2B 91.624 2328 150 21 1 2309 83722167 83724468 0.000000e+00 3177
12 TraesCS1D01G053200 chr2D 95.025 1990 83 7 1 1975 459635235 459633247 0.000000e+00 3112
13 TraesCS1D01G053200 chr2D 93.253 1986 112 13 1 1971 302022220 302020242 0.000000e+00 2905
14 TraesCS1D01G053200 chr2D 98.039 306 5 1 2310 2614 162733954 162733649 4.950000e-147 531
15 TraesCS1D01G053200 chr2D 92.877 351 25 0 1960 2310 459633306 459632956 6.450000e-141 510
16 TraesCS1D01G053200 chr5B 92.163 1595 97 10 720 2309 705458365 705459936 0.000000e+00 2228
17 TraesCS1D01G053200 chr2A 91.660 1307 65 16 1024 2310 218576610 218577892 0.000000e+00 1770
18 TraesCS1D01G053200 chr1A 94.813 347 18 0 1963 2309 48228034 48227688 2.290000e-150 542
19 TraesCS1D01G053200 chr5D 97.705 305 7 0 2310 2614 406121444 406121748 2.300000e-145 525
20 TraesCS1D01G053200 chr5D 97.712 306 6 1 2310 2614 496193560 496193865 2.300000e-145 525
21 TraesCS1D01G053200 chr4D 97.705 305 7 0 2310 2614 492708876 492709180 2.300000e-145 525
22 TraesCS1D01G053200 chrUn 97.386 306 7 1 2310 2614 114479801 114480106 1.070000e-143 520
23 TraesCS1D01G053200 chr6D 97.386 306 7 1 2310 2614 394434365 394434670 1.070000e-143 520


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G053200 chr1D 34229433 34232046 2613 False 4828 4828 100.000 1 2614 1 chr1D.!!$F1 2613
1 TraesCS1D01G053200 chr1D 419053263 419055579 2316 False 3914 3914 97.196 1 2312 1 chr1D.!!$F2 2311
2 TraesCS1D01G053200 chr7D 61667075 61669377 2302 True 3644 3644 95.226 1 2310 1 chr7D.!!$R1 2309
3 TraesCS1D01G053200 chr5A 338456594 338458888 2294 True 3592 3592 94.868 1 2309 1 chr5A.!!$R1 2308
4 TraesCS1D01G053200 chr5A 501187919 501189751 1832 True 2872 2872 94.992 1 1829 1 chr5A.!!$R2 1828
5 TraesCS1D01G053200 chr4B 642268763 642271065 2302 False 3323 3323 92.719 1 2309 1 chr4B.!!$F1 2308
6 TraesCS1D01G053200 chr3A 717429366 717431662 2296 False 3234 3234 92.089 1 2310 1 chr3A.!!$F1 2309
7 TraesCS1D01G053200 chr7A 720222018 720224359 2341 True 3208 3208 91.652 1 2309 1 chr7A.!!$R1 2308
8 TraesCS1D01G053200 chr2B 83722167 83724468 2301 False 3177 3177 91.624 1 2309 1 chr2B.!!$F1 2308
9 TraesCS1D01G053200 chr2D 302020242 302022220 1978 True 2905 2905 93.253 1 1971 1 chr2D.!!$R2 1970
10 TraesCS1D01G053200 chr2D 459632956 459635235 2279 True 1811 3112 93.951 1 2310 2 chr2D.!!$R3 2309
11 TraesCS1D01G053200 chr5B 705458365 705459936 1571 False 2228 2228 92.163 720 2309 1 chr5B.!!$F1 1589
12 TraesCS1D01G053200 chr2A 218576610 218577892 1282 False 1770 1770 91.660 1024 2310 1 chr2A.!!$F1 1286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 716 1.626321 TGTAGTTTCGGCCATCCTCAA 59.374 47.619 2.24 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2572 2674 0.031178 GCGTATCGTATCACGGGGTT 59.969 55.0 0.0 0.0 42.81 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 150 8.404000 GCATTGTCATGAGAAATATTCTTGACT 58.596 33.333 9.61 4.70 44.06 3.41
256 280 5.076182 TGCATTGGATTTGTTCAAGGAGTA 58.924 37.500 0.00 0.00 0.00 2.59
352 378 7.666623 ACTACCAACCATCATTTTACCTTTTG 58.333 34.615 0.00 0.00 0.00 2.44
683 716 1.626321 TGTAGTTTCGGCCATCCTCAA 59.374 47.619 2.24 0.00 0.00 3.02
876 928 5.696822 TCGACTGTTATCACAAGTGTCTAC 58.303 41.667 0.00 0.00 30.36 2.59
1208 1261 1.856265 GAGCTTCGGGCACTTGTTGG 61.856 60.000 0.00 0.00 44.79 3.77
1220 1273 1.331214 CTTGTTGGCACCTTGACCAT 58.669 50.000 0.00 0.00 35.42 3.55
1292 1345 5.012458 ACATGAAGAGAGATGAGGACAACAA 59.988 40.000 0.00 0.00 0.00 2.83
1360 1413 1.540267 AGTTGCAAGCAAGATCAGCTG 59.460 47.619 7.63 7.63 42.53 4.24
1500 1553 1.479730 TGCACACTGTTGGATGCAAAA 59.520 42.857 0.00 0.00 44.72 2.44
1596 1649 9.243637 TGTTGTTCTTCTTTTATGTATTTGTGC 57.756 29.630 0.00 0.00 0.00 4.57
1667 1732 0.178964 CAAAGAAGGGCTGGGTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
1674 1739 0.919710 GGGCTGGGTTGGATAGAGTT 59.080 55.000 0.00 0.00 0.00 3.01
1723 1789 3.390135 CTCGAAACACACTTTCTGGCTA 58.610 45.455 0.00 0.00 0.00 3.93
1882 1962 5.128008 GCCTGTACTAAAATAAATGGGCCAA 59.872 40.000 11.89 0.00 0.00 4.52
1890 1970 2.088104 TAAATGGGCCAAACCACACA 57.912 45.000 11.89 0.00 44.72 3.72
1923 2003 1.596752 CGGCTTACACTGTGCCACA 60.597 57.895 7.90 0.00 46.39 4.17
1971 2073 4.783621 ATGCTGGCGCCACGTCAT 62.784 61.111 29.03 24.35 41.69 3.06
1974 2076 2.887568 CTGGCGCCACGTCATCTC 60.888 66.667 29.03 0.00 41.69 2.75
1975 2077 4.451150 TGGCGCCACGTCATCTCC 62.451 66.667 29.03 0.00 36.25 3.71
1976 2078 4.451150 GGCGCCACGTCATCTCCA 62.451 66.667 24.80 0.00 0.00 3.86
1977 2079 2.202932 GCGCCACGTCATCTCCAT 60.203 61.111 0.00 0.00 0.00 3.41
1978 2080 1.067416 GCGCCACGTCATCTCCATA 59.933 57.895 0.00 0.00 0.00 2.74
1979 2081 1.215655 GCGCCACGTCATCTCCATAC 61.216 60.000 0.00 0.00 0.00 2.39
1980 2082 0.385751 CGCCACGTCATCTCCATACT 59.614 55.000 0.00 0.00 0.00 2.12
1981 2083 1.858091 GCCACGTCATCTCCATACTG 58.142 55.000 0.00 0.00 0.00 2.74
1982 2084 1.539065 GCCACGTCATCTCCATACTGG 60.539 57.143 0.00 0.00 39.43 4.00
2076 2178 5.204673 GTCATGTAAATCTGTGACGGAAC 57.795 43.478 0.00 0.00 32.64 3.62
2221 2323 4.384846 ACGCGATATACATGACGGATTTTC 59.615 41.667 15.93 0.00 0.00 2.29
2253 2355 1.308069 CCGGCCATCCTTGACAGTTG 61.308 60.000 2.24 0.00 0.00 3.16
2312 2414 6.833342 TTAACGACTTTCTTGTAGTGGTTC 57.167 37.500 6.66 0.00 41.58 3.62
2313 2415 4.667519 ACGACTTTCTTGTAGTGGTTCT 57.332 40.909 0.00 0.00 31.65 3.01
2314 2416 5.019785 ACGACTTTCTTGTAGTGGTTCTT 57.980 39.130 0.00 0.00 31.65 2.52
2315 2417 5.425630 ACGACTTTCTTGTAGTGGTTCTTT 58.574 37.500 0.00 0.00 31.65 2.52
2316 2418 5.293569 ACGACTTTCTTGTAGTGGTTCTTTG 59.706 40.000 0.00 0.00 31.65 2.77
2317 2419 5.522460 CGACTTTCTTGTAGTGGTTCTTTGA 59.478 40.000 0.00 0.00 0.00 2.69
2318 2420 6.202954 CGACTTTCTTGTAGTGGTTCTTTGAT 59.797 38.462 0.00 0.00 0.00 2.57
2319 2421 7.254795 CGACTTTCTTGTAGTGGTTCTTTGATT 60.255 37.037 0.00 0.00 0.00 2.57
2320 2422 7.707104 ACTTTCTTGTAGTGGTTCTTTGATTG 58.293 34.615 0.00 0.00 0.00 2.67
2321 2423 7.339466 ACTTTCTTGTAGTGGTTCTTTGATTGT 59.661 33.333 0.00 0.00 0.00 2.71
2322 2424 6.861065 TCTTGTAGTGGTTCTTTGATTGTC 57.139 37.500 0.00 0.00 0.00 3.18
2323 2425 5.763204 TCTTGTAGTGGTTCTTTGATTGTCC 59.237 40.000 0.00 0.00 0.00 4.02
2324 2426 5.304686 TGTAGTGGTTCTTTGATTGTCCT 57.695 39.130 0.00 0.00 0.00 3.85
2325 2427 5.305585 TGTAGTGGTTCTTTGATTGTCCTC 58.694 41.667 0.00 0.00 0.00 3.71
2326 2428 3.756117 AGTGGTTCTTTGATTGTCCTCC 58.244 45.455 0.00 0.00 0.00 4.30
2327 2429 3.395941 AGTGGTTCTTTGATTGTCCTCCT 59.604 43.478 0.00 0.00 0.00 3.69
2328 2430 4.141158 AGTGGTTCTTTGATTGTCCTCCTT 60.141 41.667 0.00 0.00 0.00 3.36
2329 2431 5.073144 AGTGGTTCTTTGATTGTCCTCCTTA 59.927 40.000 0.00 0.00 0.00 2.69
2330 2432 5.946377 GTGGTTCTTTGATTGTCCTCCTTAT 59.054 40.000 0.00 0.00 0.00 1.73
2331 2433 5.945784 TGGTTCTTTGATTGTCCTCCTTATG 59.054 40.000 0.00 0.00 0.00 1.90
2332 2434 6.180472 GGTTCTTTGATTGTCCTCCTTATGA 58.820 40.000 0.00 0.00 0.00 2.15
2333 2435 6.317391 GGTTCTTTGATTGTCCTCCTTATGAG 59.683 42.308 0.00 0.00 41.07 2.90
2334 2436 6.627087 TCTTTGATTGTCCTCCTTATGAGT 57.373 37.500 0.00 0.00 39.65 3.41
2335 2437 6.409704 TCTTTGATTGTCCTCCTTATGAGTG 58.590 40.000 0.00 0.00 39.65 3.51
2336 2438 4.760530 TGATTGTCCTCCTTATGAGTGG 57.239 45.455 0.00 0.00 39.65 4.00
2337 2439 3.118261 TGATTGTCCTCCTTATGAGTGGC 60.118 47.826 0.00 0.00 39.65 5.01
2338 2440 0.824109 TGTCCTCCTTATGAGTGGCG 59.176 55.000 0.00 0.00 39.65 5.69
2339 2441 0.105039 GTCCTCCTTATGAGTGGCGG 59.895 60.000 0.00 0.00 39.65 6.13
2340 2442 0.325296 TCCTCCTTATGAGTGGCGGT 60.325 55.000 0.00 0.00 39.65 5.68
2341 2443 0.105039 CCTCCTTATGAGTGGCGGTC 59.895 60.000 0.00 0.00 39.65 4.79
2342 2444 0.249073 CTCCTTATGAGTGGCGGTCG 60.249 60.000 0.00 0.00 36.27 4.79
2343 2445 1.227263 CCTTATGAGTGGCGGTCGG 60.227 63.158 0.00 0.00 0.00 4.79
2344 2446 1.227263 CTTATGAGTGGCGGTCGGG 60.227 63.158 0.00 0.00 0.00 5.14
2345 2447 2.644555 CTTATGAGTGGCGGTCGGGG 62.645 65.000 0.00 0.00 0.00 5.73
2346 2448 3.665515 TATGAGTGGCGGTCGGGGA 62.666 63.158 0.00 0.00 0.00 4.81
2359 2461 3.148279 GGGGACGAGCGATGGTCT 61.148 66.667 15.41 0.00 33.70 3.85
2360 2462 2.722201 GGGGACGAGCGATGGTCTT 61.722 63.158 15.41 0.00 33.70 3.01
2361 2463 1.218316 GGGACGAGCGATGGTCTTT 59.782 57.895 15.41 0.00 33.70 2.52
2362 2464 0.391263 GGGACGAGCGATGGTCTTTT 60.391 55.000 15.41 0.00 33.70 2.27
2363 2465 1.000145 GGACGAGCGATGGTCTTTTC 59.000 55.000 15.41 0.00 33.70 2.29
2364 2466 1.000145 GACGAGCGATGGTCTTTTCC 59.000 55.000 8.67 0.00 0.00 3.13
2365 2467 0.608640 ACGAGCGATGGTCTTTTCCT 59.391 50.000 0.00 0.00 0.00 3.36
2366 2468 1.822990 ACGAGCGATGGTCTTTTCCTA 59.177 47.619 0.00 0.00 0.00 2.94
2367 2469 2.194271 CGAGCGATGGTCTTTTCCTAC 58.806 52.381 0.00 0.00 0.00 3.18
2368 2470 2.552031 GAGCGATGGTCTTTTCCTACC 58.448 52.381 0.00 0.00 36.24 3.18
2377 2479 6.248569 TGGTCTTTTCCTACCAATCTATCC 57.751 41.667 0.00 0.00 42.74 2.59
2378 2480 5.132144 TGGTCTTTTCCTACCAATCTATCCC 59.868 44.000 0.00 0.00 42.74 3.85
2379 2481 5.456330 GGTCTTTTCCTACCAATCTATCCCC 60.456 48.000 0.00 0.00 35.73 4.81
2380 2482 4.663592 TCTTTTCCTACCAATCTATCCCCC 59.336 45.833 0.00 0.00 0.00 5.40
2381 2483 4.311208 TTTCCTACCAATCTATCCCCCT 57.689 45.455 0.00 0.00 0.00 4.79
2382 2484 5.443277 TTTCCTACCAATCTATCCCCCTA 57.557 43.478 0.00 0.00 0.00 3.53
2383 2485 4.694280 TCCTACCAATCTATCCCCCTAG 57.306 50.000 0.00 0.00 0.00 3.02
2384 2486 3.340049 TCCTACCAATCTATCCCCCTAGG 59.660 52.174 0.06 0.06 0.00 3.02
2392 2494 2.844362 TCCCCCTAGGAGCATGCG 60.844 66.667 11.48 0.00 40.93 4.73
2393 2495 4.632974 CCCCCTAGGAGCATGCGC 62.633 72.222 13.62 13.62 38.24 6.09
2394 2496 4.976925 CCCCTAGGAGCATGCGCG 62.977 72.222 15.49 0.00 45.49 6.86
2395 2497 4.227134 CCCTAGGAGCATGCGCGT 62.227 66.667 20.11 20.11 45.49 6.01
2396 2498 2.728180 CCTAGGAGCATGCGCGTA 59.272 61.111 20.19 20.19 45.49 4.42
2397 2499 1.372251 CCTAGGAGCATGCGCGTAG 60.372 63.158 31.74 31.74 45.49 3.51
2398 2500 1.360551 CTAGGAGCATGCGCGTAGT 59.639 57.895 30.88 13.86 45.49 2.73
2399 2501 0.936764 CTAGGAGCATGCGCGTAGTG 60.937 60.000 30.88 16.05 45.49 2.74
2409 2511 3.837669 CGCGTAGTGCTTGGTTTTT 57.162 47.368 0.00 0.00 43.27 1.94
2410 2512 1.394697 CGCGTAGTGCTTGGTTTTTG 58.605 50.000 0.00 0.00 43.27 2.44
2411 2513 1.003331 CGCGTAGTGCTTGGTTTTTGA 60.003 47.619 0.00 0.00 43.27 2.69
2412 2514 2.350388 CGCGTAGTGCTTGGTTTTTGAT 60.350 45.455 0.00 0.00 43.27 2.57
2413 2515 2.979813 GCGTAGTGCTTGGTTTTTGATG 59.020 45.455 0.00 0.00 41.73 3.07
2414 2516 3.304391 GCGTAGTGCTTGGTTTTTGATGA 60.304 43.478 0.00 0.00 41.73 2.92
2415 2517 4.219033 CGTAGTGCTTGGTTTTTGATGAC 58.781 43.478 0.00 0.00 0.00 3.06
2416 2518 4.024048 CGTAGTGCTTGGTTTTTGATGACT 60.024 41.667 0.00 0.00 0.00 3.41
2417 2519 5.505654 CGTAGTGCTTGGTTTTTGATGACTT 60.506 40.000 0.00 0.00 0.00 3.01
2418 2520 4.685924 AGTGCTTGGTTTTTGATGACTTG 58.314 39.130 0.00 0.00 0.00 3.16
2419 2521 4.160252 AGTGCTTGGTTTTTGATGACTTGT 59.840 37.500 0.00 0.00 0.00 3.16
2420 2522 5.359576 AGTGCTTGGTTTTTGATGACTTGTA 59.640 36.000 0.00 0.00 0.00 2.41
2421 2523 5.687285 GTGCTTGGTTTTTGATGACTTGTAG 59.313 40.000 0.00 0.00 0.00 2.74
2422 2524 5.592282 TGCTTGGTTTTTGATGACTTGTAGA 59.408 36.000 0.00 0.00 0.00 2.59
2423 2525 6.265196 TGCTTGGTTTTTGATGACTTGTAGAT 59.735 34.615 0.00 0.00 0.00 1.98
2424 2526 7.147976 GCTTGGTTTTTGATGACTTGTAGATT 58.852 34.615 0.00 0.00 0.00 2.40
2425 2527 7.653311 GCTTGGTTTTTGATGACTTGTAGATTT 59.347 33.333 0.00 0.00 0.00 2.17
2426 2528 9.533253 CTTGGTTTTTGATGACTTGTAGATTTT 57.467 29.630 0.00 0.00 0.00 1.82
2427 2529 9.883142 TTGGTTTTTGATGACTTGTAGATTTTT 57.117 25.926 0.00 0.00 0.00 1.94
2428 2530 9.311916 TGGTTTTTGATGACTTGTAGATTTTTG 57.688 29.630 0.00 0.00 0.00 2.44
2429 2531 8.275632 GGTTTTTGATGACTTGTAGATTTTTGC 58.724 33.333 0.00 0.00 0.00 3.68
2430 2532 8.816144 GTTTTTGATGACTTGTAGATTTTTGCA 58.184 29.630 0.00 0.00 0.00 4.08
2431 2533 8.939201 TTTTGATGACTTGTAGATTTTTGCAA 57.061 26.923 0.00 0.00 0.00 4.08
2432 2534 9.545105 TTTTGATGACTTGTAGATTTTTGCAAT 57.455 25.926 0.00 0.00 0.00 3.56
2435 2537 9.844790 TGATGACTTGTAGATTTTTGCAATAAG 57.155 29.630 0.00 0.00 0.00 1.73
2436 2538 9.846248 GATGACTTGTAGATTTTTGCAATAAGT 57.154 29.630 0.00 0.00 0.00 2.24
2446 2548 9.846248 AGATTTTTGCAATAAGTATGTGAGTTC 57.154 29.630 0.00 0.00 0.00 3.01
2447 2549 9.846248 GATTTTTGCAATAAGTATGTGAGTTCT 57.154 29.630 0.00 0.00 0.00 3.01
2453 2555 9.665719 TGCAATAAGTATGTGAGTTCTTTATGA 57.334 29.630 0.00 0.00 0.00 2.15
2454 2556 9.922305 GCAATAAGTATGTGAGTTCTTTATGAC 57.078 33.333 0.00 0.00 0.00 3.06
2463 2565 9.725019 ATGTGAGTTCTTTATGACTAATGTTGA 57.275 29.630 0.00 0.00 0.00 3.18
2464 2566 9.208022 TGTGAGTTCTTTATGACTAATGTTGAG 57.792 33.333 0.00 0.00 0.00 3.02
2465 2567 9.209175 GTGAGTTCTTTATGACTAATGTTGAGT 57.791 33.333 0.00 0.00 0.00 3.41
2466 2568 9.424319 TGAGTTCTTTATGACTAATGTTGAGTC 57.576 33.333 0.00 0.00 43.10 3.36
2467 2569 8.779354 AGTTCTTTATGACTAATGTTGAGTCC 57.221 34.615 0.61 0.00 42.29 3.85
2468 2570 8.375506 AGTTCTTTATGACTAATGTTGAGTCCA 58.624 33.333 0.61 0.00 42.29 4.02
2469 2571 8.660373 GTTCTTTATGACTAATGTTGAGTCCAG 58.340 37.037 0.61 0.00 42.29 3.86
2470 2572 7.331026 TCTTTATGACTAATGTTGAGTCCAGG 58.669 38.462 0.61 0.00 42.29 4.45
2471 2573 3.981071 TGACTAATGTTGAGTCCAGGG 57.019 47.619 0.61 0.00 42.29 4.45
2472 2574 3.516586 TGACTAATGTTGAGTCCAGGGA 58.483 45.455 0.61 0.00 42.29 4.20
2473 2575 4.104086 TGACTAATGTTGAGTCCAGGGAT 58.896 43.478 0.61 0.00 42.29 3.85
2474 2576 4.536090 TGACTAATGTTGAGTCCAGGGATT 59.464 41.667 0.61 0.00 42.29 3.01
2475 2577 5.724370 TGACTAATGTTGAGTCCAGGGATTA 59.276 40.000 0.61 0.00 42.29 1.75
2476 2578 6.386927 TGACTAATGTTGAGTCCAGGGATTAT 59.613 38.462 0.61 0.00 42.29 1.28
2477 2579 7.567250 TGACTAATGTTGAGTCCAGGGATTATA 59.433 37.037 0.61 0.00 42.29 0.98
2478 2580 7.736893 ACTAATGTTGAGTCCAGGGATTATAC 58.263 38.462 0.00 0.00 0.00 1.47
2479 2581 4.665833 TGTTGAGTCCAGGGATTATACG 57.334 45.455 0.00 0.00 0.00 3.06
2480 2582 3.181469 TGTTGAGTCCAGGGATTATACGC 60.181 47.826 0.00 0.00 0.00 4.42
2481 2583 2.673258 TGAGTCCAGGGATTATACGCA 58.327 47.619 0.00 0.00 0.00 5.24
2482 2584 2.364324 TGAGTCCAGGGATTATACGCAC 59.636 50.000 0.00 0.00 0.00 5.34
2483 2585 2.628657 GAGTCCAGGGATTATACGCACT 59.371 50.000 0.00 0.00 0.00 4.40
2484 2586 2.628657 AGTCCAGGGATTATACGCACTC 59.371 50.000 0.00 0.00 0.00 3.51
2485 2587 2.628657 GTCCAGGGATTATACGCACTCT 59.371 50.000 0.00 0.00 0.00 3.24
2486 2588 3.069729 GTCCAGGGATTATACGCACTCTT 59.930 47.826 0.00 0.00 0.00 2.85
2487 2589 4.280174 GTCCAGGGATTATACGCACTCTTA 59.720 45.833 0.00 0.00 0.00 2.10
2488 2590 4.280174 TCCAGGGATTATACGCACTCTTAC 59.720 45.833 0.00 0.00 0.00 2.34
2489 2591 4.557205 CAGGGATTATACGCACTCTTACC 58.443 47.826 0.00 0.00 0.00 2.85
2490 2592 4.281182 CAGGGATTATACGCACTCTTACCT 59.719 45.833 0.00 0.00 0.00 3.08
2491 2593 4.900054 AGGGATTATACGCACTCTTACCTT 59.100 41.667 0.00 0.00 0.00 3.50
2492 2594 5.010820 AGGGATTATACGCACTCTTACCTTC 59.989 44.000 0.00 0.00 0.00 3.46
2493 2595 5.228665 GGATTATACGCACTCTTACCTTCC 58.771 45.833 0.00 0.00 0.00 3.46
2494 2596 5.221382 GGATTATACGCACTCTTACCTTCCA 60.221 44.000 0.00 0.00 0.00 3.53
2495 2597 5.864418 TTATACGCACTCTTACCTTCCAT 57.136 39.130 0.00 0.00 0.00 3.41
2496 2598 2.674796 ACGCACTCTTACCTTCCATC 57.325 50.000 0.00 0.00 0.00 3.51
2497 2599 1.899814 ACGCACTCTTACCTTCCATCA 59.100 47.619 0.00 0.00 0.00 3.07
2498 2600 2.501723 ACGCACTCTTACCTTCCATCAT 59.498 45.455 0.00 0.00 0.00 2.45
2499 2601 3.055094 ACGCACTCTTACCTTCCATCATT 60.055 43.478 0.00 0.00 0.00 2.57
2500 2602 3.310774 CGCACTCTTACCTTCCATCATTG 59.689 47.826 0.00 0.00 0.00 2.82
2501 2603 3.065925 GCACTCTTACCTTCCATCATTGC 59.934 47.826 0.00 0.00 0.00 3.56
2502 2604 4.521146 CACTCTTACCTTCCATCATTGCT 58.479 43.478 0.00 0.00 0.00 3.91
2503 2605 5.674525 CACTCTTACCTTCCATCATTGCTA 58.325 41.667 0.00 0.00 0.00 3.49
2504 2606 5.757320 CACTCTTACCTTCCATCATTGCTAG 59.243 44.000 0.00 0.00 0.00 3.42
2505 2607 4.708177 TCTTACCTTCCATCATTGCTAGC 58.292 43.478 8.10 8.10 0.00 3.42
2506 2608 2.355010 ACCTTCCATCATTGCTAGCC 57.645 50.000 13.29 0.00 0.00 3.93
2507 2609 1.849039 ACCTTCCATCATTGCTAGCCT 59.151 47.619 13.29 0.00 0.00 4.58
2508 2610 2.158696 ACCTTCCATCATTGCTAGCCTC 60.159 50.000 13.29 0.00 0.00 4.70
2509 2611 2.106166 CCTTCCATCATTGCTAGCCTCT 59.894 50.000 13.29 0.00 0.00 3.69
2510 2612 3.434739 CCTTCCATCATTGCTAGCCTCTT 60.435 47.826 13.29 0.00 0.00 2.85
2511 2613 3.482156 TCCATCATTGCTAGCCTCTTC 57.518 47.619 13.29 0.00 0.00 2.87
2512 2614 2.141517 CCATCATTGCTAGCCTCTTCG 58.858 52.381 13.29 0.00 0.00 3.79
2513 2615 2.141517 CATCATTGCTAGCCTCTTCGG 58.858 52.381 13.29 0.00 0.00 4.30
2514 2616 1.195115 TCATTGCTAGCCTCTTCGGT 58.805 50.000 13.29 0.00 34.25 4.69
2515 2617 2.384828 TCATTGCTAGCCTCTTCGGTA 58.615 47.619 13.29 0.00 34.25 4.02
2516 2618 2.100916 TCATTGCTAGCCTCTTCGGTAC 59.899 50.000 13.29 0.00 34.25 3.34
2517 2619 0.822164 TTGCTAGCCTCTTCGGTACC 59.178 55.000 13.29 0.16 34.25 3.34
2518 2620 1.359475 GCTAGCCTCTTCGGTACCG 59.641 63.158 28.66 28.66 41.35 4.02
2519 2621 1.382692 GCTAGCCTCTTCGGTACCGT 61.383 60.000 32.16 14.90 40.74 4.83
2520 2622 0.381089 CTAGCCTCTTCGGTACCGTG 59.619 60.000 32.16 24.69 40.74 4.94
2521 2623 1.660560 TAGCCTCTTCGGTACCGTGC 61.661 60.000 32.16 24.81 40.74 5.34
2522 2624 2.967397 CCTCTTCGGTACCGTGCA 59.033 61.111 32.16 17.14 40.74 4.57
2523 2625 1.515954 CCTCTTCGGTACCGTGCAT 59.484 57.895 32.16 0.00 40.74 3.96
2524 2626 0.108329 CCTCTTCGGTACCGTGCATT 60.108 55.000 32.16 0.00 40.74 3.56
2525 2627 0.999406 CTCTTCGGTACCGTGCATTG 59.001 55.000 32.16 16.68 40.74 2.82
2526 2628 1.017177 TCTTCGGTACCGTGCATTGC 61.017 55.000 32.16 0.46 40.74 3.56
2527 2629 1.977594 CTTCGGTACCGTGCATTGCC 61.978 60.000 32.16 0.00 40.74 4.52
2528 2630 3.505184 CGGTACCGTGCATTGCCC 61.505 66.667 26.39 0.00 34.35 5.36
2529 2631 2.360600 GGTACCGTGCATTGCCCA 60.361 61.111 6.12 0.00 0.00 5.36
2530 2632 1.752694 GGTACCGTGCATTGCCCAT 60.753 57.895 6.12 0.00 0.00 4.00
2531 2633 1.319614 GGTACCGTGCATTGCCCATT 61.320 55.000 6.12 0.00 0.00 3.16
2532 2634 0.100503 GTACCGTGCATTGCCCATTC 59.899 55.000 6.12 0.00 0.00 2.67
2533 2635 0.034574 TACCGTGCATTGCCCATTCT 60.035 50.000 6.12 0.00 0.00 2.40
2534 2636 1.315257 ACCGTGCATTGCCCATTCTC 61.315 55.000 6.12 0.00 0.00 2.87
2535 2637 1.314534 CCGTGCATTGCCCATTCTCA 61.315 55.000 6.12 0.00 0.00 3.27
2536 2638 0.179156 CGTGCATTGCCCATTCTCAC 60.179 55.000 6.12 0.00 0.00 3.51
2537 2639 0.174162 GTGCATTGCCCATTCTCACC 59.826 55.000 6.12 0.00 0.00 4.02
2538 2640 0.040058 TGCATTGCCCATTCTCACCT 59.960 50.000 6.12 0.00 0.00 4.00
2539 2641 1.188863 GCATTGCCCATTCTCACCTT 58.811 50.000 0.00 0.00 0.00 3.50
2540 2642 1.134907 GCATTGCCCATTCTCACCTTG 60.135 52.381 0.00 0.00 0.00 3.61
2541 2643 2.449464 CATTGCCCATTCTCACCTTGA 58.551 47.619 0.00 0.00 0.00 3.02
2542 2644 2.205022 TTGCCCATTCTCACCTTGAG 57.795 50.000 0.00 0.00 45.59 3.02
2554 2656 4.415881 TCACCTTGAGAGTTAGTGCAAA 57.584 40.909 0.00 0.00 0.00 3.68
2555 2657 4.127171 TCACCTTGAGAGTTAGTGCAAAC 58.873 43.478 0.00 0.00 0.00 2.93
2556 2658 4.130118 CACCTTGAGAGTTAGTGCAAACT 58.870 43.478 3.42 3.42 42.36 2.66
2557 2659 4.576463 CACCTTGAGAGTTAGTGCAAACTT 59.424 41.667 5.30 0.00 39.78 2.66
2558 2660 4.816925 ACCTTGAGAGTTAGTGCAAACTTC 59.183 41.667 5.30 6.06 39.78 3.01
2559 2661 4.084328 CCTTGAGAGTTAGTGCAAACTTCG 60.084 45.833 5.30 0.00 39.78 3.79
2560 2662 2.800544 TGAGAGTTAGTGCAAACTTCGC 59.199 45.455 5.30 2.61 39.78 4.70
2561 2663 3.060602 GAGAGTTAGTGCAAACTTCGCT 58.939 45.455 5.30 0.00 39.78 4.93
2562 2664 2.802816 AGAGTTAGTGCAAACTTCGCTG 59.197 45.455 5.30 0.00 39.78 5.18
2563 2665 1.873591 AGTTAGTGCAAACTTCGCTGG 59.126 47.619 0.00 0.00 36.26 4.85
2564 2666 1.602377 GTTAGTGCAAACTTCGCTGGT 59.398 47.619 0.00 0.00 0.00 4.00
2565 2667 1.508632 TAGTGCAAACTTCGCTGGTC 58.491 50.000 0.00 0.00 0.00 4.02
2566 2668 1.166531 AGTGCAAACTTCGCTGGTCC 61.167 55.000 0.00 0.00 0.00 4.46
2567 2669 1.153066 TGCAAACTTCGCTGGTCCA 60.153 52.632 0.00 0.00 0.00 4.02
2568 2670 0.537143 TGCAAACTTCGCTGGTCCAT 60.537 50.000 0.00 0.00 0.00 3.41
2569 2671 0.169009 GCAAACTTCGCTGGTCCATC 59.831 55.000 0.00 0.00 0.00 3.51
2570 2672 0.804989 CAAACTTCGCTGGTCCATCC 59.195 55.000 0.00 0.00 0.00 3.51
2571 2673 0.400213 AAACTTCGCTGGTCCATCCA 59.600 50.000 0.00 0.00 45.01 3.41
2572 2674 0.400213 AACTTCGCTGGTCCATCCAA 59.600 50.000 0.00 0.00 46.59 3.53
2573 2675 0.400213 ACTTCGCTGGTCCATCCAAA 59.600 50.000 0.00 0.00 46.59 3.28
2574 2676 0.804989 CTTCGCTGGTCCATCCAAAC 59.195 55.000 0.00 0.00 46.59 2.93
2575 2677 0.608035 TTCGCTGGTCCATCCAAACC 60.608 55.000 0.00 0.00 46.59 3.27
2576 2678 2.046285 CGCTGGTCCATCCAAACCC 61.046 63.158 0.00 0.00 46.59 4.11
2577 2679 1.682344 GCTGGTCCATCCAAACCCC 60.682 63.158 0.00 0.00 46.59 4.95
2578 2680 1.378514 CTGGTCCATCCAAACCCCG 60.379 63.158 0.00 0.00 46.59 5.73
2579 2681 2.137177 CTGGTCCATCCAAACCCCGT 62.137 60.000 0.00 0.00 46.59 5.28
2580 2682 1.677633 GGTCCATCCAAACCCCGTG 60.678 63.158 0.00 0.00 35.97 4.94
2581 2683 1.377229 GTCCATCCAAACCCCGTGA 59.623 57.895 0.00 0.00 0.00 4.35
2582 2684 0.034477 GTCCATCCAAACCCCGTGAT 60.034 55.000 0.00 0.00 0.00 3.06
2583 2685 1.210967 GTCCATCCAAACCCCGTGATA 59.789 52.381 0.00 0.00 0.00 2.15
2584 2686 1.210967 TCCATCCAAACCCCGTGATAC 59.789 52.381 0.00 0.00 0.00 2.24
2585 2687 1.295792 CATCCAAACCCCGTGATACG 58.704 55.000 0.00 0.00 42.11 3.06
2586 2688 1.134640 CATCCAAACCCCGTGATACGA 60.135 52.381 2.52 0.00 46.05 3.43
2587 2689 1.196911 TCCAAACCCCGTGATACGAT 58.803 50.000 2.52 0.00 46.05 3.73
2588 2690 2.386779 TCCAAACCCCGTGATACGATA 58.613 47.619 2.52 0.00 46.05 2.92
2589 2691 2.101249 TCCAAACCCCGTGATACGATAC 59.899 50.000 2.52 0.00 46.05 2.24
2590 2692 2.121786 CAAACCCCGTGATACGATACG 58.878 52.381 2.52 0.00 46.05 3.06
2591 2693 0.031178 AACCCCGTGATACGATACGC 59.969 55.000 2.52 0.00 46.05 4.42
2592 2694 0.820891 ACCCCGTGATACGATACGCT 60.821 55.000 2.52 0.00 46.05 5.07
2593 2695 0.109873 CCCCGTGATACGATACGCTC 60.110 60.000 2.52 0.00 46.05 5.03
2594 2696 0.873054 CCCGTGATACGATACGCTCT 59.127 55.000 2.52 0.00 46.05 4.09
2595 2697 2.071540 CCCGTGATACGATACGCTCTA 58.928 52.381 2.52 0.00 46.05 2.43
2596 2698 2.676839 CCCGTGATACGATACGCTCTAT 59.323 50.000 2.52 0.00 46.05 1.98
2597 2699 3.242349 CCCGTGATACGATACGCTCTATC 60.242 52.174 2.52 0.00 46.05 2.08
2598 2700 3.370061 CCGTGATACGATACGCTCTATCA 59.630 47.826 2.52 0.00 46.05 2.15
2599 2701 4.324568 CGTGATACGATACGCTCTATCAC 58.675 47.826 16.15 16.15 46.05 3.06
2600 2702 4.143179 CGTGATACGATACGCTCTATCACA 60.143 45.833 21.20 6.44 46.05 3.58
2601 2703 5.080731 GTGATACGATACGCTCTATCACAC 58.919 45.833 18.85 0.00 40.35 3.82
2602 2704 4.753107 TGATACGATACGCTCTATCACACA 59.247 41.667 0.00 0.00 0.00 3.72
2603 2705 5.411669 TGATACGATACGCTCTATCACACAT 59.588 40.000 0.00 0.00 0.00 3.21
2604 2706 6.592607 TGATACGATACGCTCTATCACACATA 59.407 38.462 0.00 0.00 0.00 2.29
2605 2707 5.684550 ACGATACGCTCTATCACACATAA 57.315 39.130 0.00 0.00 0.00 1.90
2606 2708 5.690816 ACGATACGCTCTATCACACATAAG 58.309 41.667 0.00 0.00 0.00 1.73
2607 2709 4.555360 CGATACGCTCTATCACACATAAGC 59.445 45.833 0.00 0.00 0.00 3.09
2608 2710 3.099267 ACGCTCTATCACACATAAGCC 57.901 47.619 0.00 0.00 0.00 4.35
2609 2711 2.695666 ACGCTCTATCACACATAAGCCT 59.304 45.455 0.00 0.00 0.00 4.58
2610 2712 3.243569 ACGCTCTATCACACATAAGCCTC 60.244 47.826 0.00 0.00 0.00 4.70
2611 2713 3.658709 GCTCTATCACACATAAGCCTCC 58.341 50.000 0.00 0.00 0.00 4.30
2612 2714 3.323403 GCTCTATCACACATAAGCCTCCT 59.677 47.826 0.00 0.00 0.00 3.69
2613 2715 4.202305 GCTCTATCACACATAAGCCTCCTT 60.202 45.833 0.00 0.00 35.05 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 150 6.167685 ACGCAACAGTTAACATGAACCTATA 58.832 36.000 8.61 0.00 0.00 1.31
139 163 3.671008 ACTACATGGACGCAACAGTTA 57.329 42.857 0.00 0.00 0.00 2.24
256 280 6.524101 TTTTCTTTTTCTTGCTGTAGTGGT 57.476 33.333 0.00 0.00 0.00 4.16
454 481 4.473477 ACAGGACAGGCTATTACAAGAC 57.527 45.455 0.00 0.00 0.00 3.01
854 906 5.700846 AGTAGACACTTGTGATAACAGTCG 58.299 41.667 7.83 0.00 0.00 4.18
876 928 4.122776 AGCTATCGTGCATCCTTTACAAG 58.877 43.478 0.00 0.00 34.99 3.16
891 943 5.100259 TCGTCTTTGTAAGGAAAGCTATCG 58.900 41.667 0.00 0.00 33.63 2.92
1086 1139 5.445964 TGAAGAAACCTTGGCTTCTTAGTT 58.554 37.500 15.45 0.00 40.98 2.24
1208 1261 0.038892 CAACTGCATGGTCAAGGTGC 60.039 55.000 0.00 0.00 39.26 5.01
1220 1273 0.756294 TTCGGACTCCTTCAACTGCA 59.244 50.000 0.00 0.00 0.00 4.41
1292 1345 2.570752 TCCATCTCAGCTTGCTTCTTCT 59.429 45.455 0.00 0.00 0.00 2.85
1360 1413 4.885325 TCTTGGACAAACAACTTACCCTTC 59.115 41.667 0.00 0.00 0.00 3.46
1596 1649 3.896888 AGAGCTTACATCTCCAGATCCAG 59.103 47.826 0.00 0.00 31.21 3.86
1624 1677 7.846272 TTGTTTCTACACAAAATGGGTTTCCAG 60.846 37.037 0.00 0.00 38.92 3.86
1667 1732 4.652421 TCGGCCCATTAGTGTTAACTCTAT 59.348 41.667 16.01 6.18 37.88 1.98
1674 1739 5.587043 CACTTTATTCGGCCCATTAGTGTTA 59.413 40.000 0.00 0.00 0.00 2.41
1859 1939 6.783708 TTGGCCCATTTATTTTAGTACAGG 57.216 37.500 0.00 0.00 0.00 4.00
1882 1962 1.603455 CATTCGGCCCTGTGTGGTT 60.603 57.895 0.00 0.00 0.00 3.67
1923 2003 2.434884 CGCCAACGTGGAGCTGAT 60.435 61.111 8.04 0.00 40.96 2.90
1961 2063 0.385751 AGTATGGAGATGACGTGGCG 59.614 55.000 0.00 0.00 0.00 5.69
1962 2064 1.858091 CAGTATGGAGATGACGTGGC 58.142 55.000 0.00 0.00 0.00 5.01
1975 2077 1.490693 GATGACGTGGCGCCAGTATG 61.491 60.000 33.73 22.11 0.00 2.39
1976 2078 1.227263 GATGACGTGGCGCCAGTAT 60.227 57.895 33.73 21.12 0.00 2.12
1977 2079 2.183300 GATGACGTGGCGCCAGTA 59.817 61.111 33.73 16.98 0.00 2.74
1978 2080 3.649277 GAGATGACGTGGCGCCAGT 62.649 63.158 33.73 28.52 0.00 4.00
1979 2081 2.887568 GAGATGACGTGGCGCCAG 60.888 66.667 33.73 25.38 0.00 4.85
1980 2082 4.451150 GGAGATGACGTGGCGCCA 62.451 66.667 29.03 29.03 0.00 5.69
1981 2083 4.451150 TGGAGATGACGTGGCGCC 62.451 66.667 22.73 22.73 0.00 6.53
1982 2084 3.188786 GTGGAGATGACGTGGCGC 61.189 66.667 0.00 0.00 0.00 6.53
2076 2178 1.587054 GGTCCTCTGTGACGGACTG 59.413 63.158 7.83 0.00 46.94 3.51
2253 2355 0.602638 TCCGTCACAGACATGGCAAC 60.603 55.000 0.00 0.00 32.09 4.17
2317 2419 5.321023 CCGCCACTCATAAGGAGGACAAT 62.321 52.174 0.00 0.00 46.54 2.71
2318 2420 4.059378 CCGCCACTCATAAGGAGGACAA 62.059 54.545 0.00 0.00 46.54 3.18
2319 2421 2.575165 CCGCCACTCATAAGGAGGACA 61.575 57.143 0.00 0.00 46.54 4.02
2320 2422 0.105039 CCGCCACTCATAAGGAGGAC 59.895 60.000 0.00 0.00 46.54 3.85
2321 2423 0.325296 ACCGCCACTCATAAGGAGGA 60.325 55.000 8.24 0.00 46.54 3.71
2324 2426 1.672854 CCGACCGCCACTCATAAGGA 61.673 60.000 0.00 0.00 0.00 3.36
2325 2427 1.227263 CCGACCGCCACTCATAAGG 60.227 63.158 0.00 0.00 0.00 2.69
2326 2428 1.227263 CCCGACCGCCACTCATAAG 60.227 63.158 0.00 0.00 0.00 1.73
2327 2429 2.727392 CCCCGACCGCCACTCATAA 61.727 63.158 0.00 0.00 0.00 1.90
2328 2430 3.151710 CCCCGACCGCCACTCATA 61.152 66.667 0.00 0.00 0.00 2.15
2338 2440 4.570663 CATCGCTCGTCCCCGACC 62.571 72.222 0.00 0.00 38.40 4.79
2339 2441 4.570663 CCATCGCTCGTCCCCGAC 62.571 72.222 0.00 0.00 38.40 4.79
2341 2443 4.570663 GACCATCGCTCGTCCCCG 62.571 72.222 0.00 0.00 0.00 5.73
2342 2444 2.240162 AAAGACCATCGCTCGTCCCC 62.240 60.000 0.00 0.00 0.00 4.81
2343 2445 0.391263 AAAAGACCATCGCTCGTCCC 60.391 55.000 0.00 0.00 0.00 4.46
2344 2446 1.000145 GAAAAGACCATCGCTCGTCC 59.000 55.000 0.00 0.00 0.00 4.79
2345 2447 1.000145 GGAAAAGACCATCGCTCGTC 59.000 55.000 0.00 0.00 0.00 4.20
2346 2448 0.608640 AGGAAAAGACCATCGCTCGT 59.391 50.000 0.00 0.00 0.00 4.18
2347 2449 2.194271 GTAGGAAAAGACCATCGCTCG 58.806 52.381 0.00 0.00 0.00 5.03
2348 2450 2.093658 TGGTAGGAAAAGACCATCGCTC 60.094 50.000 0.00 0.00 40.87 5.03
2349 2451 1.906574 TGGTAGGAAAAGACCATCGCT 59.093 47.619 0.00 0.00 40.87 4.93
2350 2452 2.396590 TGGTAGGAAAAGACCATCGC 57.603 50.000 0.00 0.00 40.87 4.58
2351 2453 4.770795 AGATTGGTAGGAAAAGACCATCG 58.229 43.478 0.00 0.00 45.09 3.84
2352 2454 6.937465 GGATAGATTGGTAGGAAAAGACCATC 59.063 42.308 0.00 0.00 45.09 3.51
2353 2455 6.183361 GGGATAGATTGGTAGGAAAAGACCAT 60.183 42.308 0.00 0.00 45.09 3.55
2354 2456 5.132144 GGGATAGATTGGTAGGAAAAGACCA 59.868 44.000 0.00 0.00 44.08 4.02
2355 2457 5.456330 GGGGATAGATTGGTAGGAAAAGACC 60.456 48.000 0.00 0.00 36.17 3.85
2356 2458 5.456330 GGGGGATAGATTGGTAGGAAAAGAC 60.456 48.000 0.00 0.00 0.00 3.01
2357 2459 4.663592 GGGGGATAGATTGGTAGGAAAAGA 59.336 45.833 0.00 0.00 0.00 2.52
2358 2460 4.665483 AGGGGGATAGATTGGTAGGAAAAG 59.335 45.833 0.00 0.00 0.00 2.27
2359 2461 4.652628 AGGGGGATAGATTGGTAGGAAAA 58.347 43.478 0.00 0.00 0.00 2.29
2360 2462 4.311208 AGGGGGATAGATTGGTAGGAAA 57.689 45.455 0.00 0.00 0.00 3.13
2361 2463 4.202901 CCTAGGGGGATAGATTGGTAGGAA 60.203 50.000 0.00 0.00 37.23 3.36
2362 2464 3.340049 CCTAGGGGGATAGATTGGTAGGA 59.660 52.174 0.00 0.00 37.23 2.94
2363 2465 3.340049 TCCTAGGGGGATAGATTGGTAGG 59.660 52.174 9.46 0.00 39.58 3.18
2364 2466 4.615513 CTCCTAGGGGGATAGATTGGTAG 58.384 52.174 9.46 0.00 44.15 3.18
2365 2467 3.246021 GCTCCTAGGGGGATAGATTGGTA 60.246 52.174 11.65 0.00 44.15 3.25
2366 2468 2.495572 GCTCCTAGGGGGATAGATTGGT 60.496 54.545 11.65 0.00 44.15 3.67
2367 2469 2.192263 GCTCCTAGGGGGATAGATTGG 58.808 57.143 11.65 0.00 44.15 3.16
2368 2470 2.907892 TGCTCCTAGGGGGATAGATTG 58.092 52.381 11.65 0.00 44.15 2.67
2369 2471 3.458831 CATGCTCCTAGGGGGATAGATT 58.541 50.000 16.38 0.00 44.15 2.40
2370 2472 2.896153 GCATGCTCCTAGGGGGATAGAT 60.896 54.545 16.38 0.00 44.15 1.98
2371 2473 1.553417 GCATGCTCCTAGGGGGATAGA 60.553 57.143 16.38 0.00 44.15 1.98
2372 2474 0.908198 GCATGCTCCTAGGGGGATAG 59.092 60.000 16.38 11.27 44.15 2.08
2373 2475 0.904865 CGCATGCTCCTAGGGGGATA 60.905 60.000 16.38 0.00 44.15 2.59
2374 2476 2.219875 CGCATGCTCCTAGGGGGAT 61.220 63.158 10.43 10.43 44.15 3.85
2375 2477 2.844362 CGCATGCTCCTAGGGGGA 60.844 66.667 17.13 8.46 42.77 4.81
2376 2478 4.632974 GCGCATGCTCCTAGGGGG 62.633 72.222 17.13 4.51 38.39 5.40
2377 2479 4.976925 CGCGCATGCTCCTAGGGG 62.977 72.222 17.13 6.61 39.65 4.79
2378 2480 2.755542 CTACGCGCATGCTCCTAGGG 62.756 65.000 17.13 10.41 39.65 3.53
2379 2481 1.372251 CTACGCGCATGCTCCTAGG 60.372 63.158 17.13 0.82 39.65 3.02
2380 2482 0.936764 CACTACGCGCATGCTCCTAG 60.937 60.000 17.13 13.42 39.65 3.02
2381 2483 1.065764 CACTACGCGCATGCTCCTA 59.934 57.895 17.13 0.99 39.65 2.94
2382 2484 2.202797 CACTACGCGCATGCTCCT 60.203 61.111 17.13 0.00 39.65 3.69
2383 2485 3.929948 GCACTACGCGCATGCTCC 61.930 66.667 17.13 5.62 39.65 4.70
2384 2486 2.887568 AGCACTACGCGCATGCTC 60.888 61.111 22.28 6.91 46.68 4.26
2392 2494 2.766970 TCAAAAACCAAGCACTACGC 57.233 45.000 0.00 0.00 42.91 4.42
2393 2495 4.024048 AGTCATCAAAAACCAAGCACTACG 60.024 41.667 0.00 0.00 0.00 3.51
2394 2496 5.438761 AGTCATCAAAAACCAAGCACTAC 57.561 39.130 0.00 0.00 0.00 2.73
2395 2497 5.359576 ACAAGTCATCAAAAACCAAGCACTA 59.640 36.000 0.00 0.00 0.00 2.74
2396 2498 4.160252 ACAAGTCATCAAAAACCAAGCACT 59.840 37.500 0.00 0.00 0.00 4.40
2397 2499 4.432712 ACAAGTCATCAAAAACCAAGCAC 58.567 39.130 0.00 0.00 0.00 4.40
2398 2500 4.734398 ACAAGTCATCAAAAACCAAGCA 57.266 36.364 0.00 0.00 0.00 3.91
2399 2501 6.072112 TCTACAAGTCATCAAAAACCAAGC 57.928 37.500 0.00 0.00 0.00 4.01
2400 2502 9.533253 AAAATCTACAAGTCATCAAAAACCAAG 57.467 29.630 0.00 0.00 0.00 3.61
2401 2503 9.883142 AAAAATCTACAAGTCATCAAAAACCAA 57.117 25.926 0.00 0.00 0.00 3.67
2402 2504 9.311916 CAAAAATCTACAAGTCATCAAAAACCA 57.688 29.630 0.00 0.00 0.00 3.67
2403 2505 8.275632 GCAAAAATCTACAAGTCATCAAAAACC 58.724 33.333 0.00 0.00 0.00 3.27
2404 2506 8.816144 TGCAAAAATCTACAAGTCATCAAAAAC 58.184 29.630 0.00 0.00 0.00 2.43
2405 2507 8.939201 TGCAAAAATCTACAAGTCATCAAAAA 57.061 26.923 0.00 0.00 0.00 1.94
2406 2508 8.939201 TTGCAAAAATCTACAAGTCATCAAAA 57.061 26.923 0.00 0.00 0.00 2.44
2409 2511 9.844790 CTTATTGCAAAAATCTACAAGTCATCA 57.155 29.630 1.71 0.00 0.00 3.07
2410 2512 9.846248 ACTTATTGCAAAAATCTACAAGTCATC 57.154 29.630 1.71 0.00 0.00 2.92
2420 2522 9.846248 GAACTCACATACTTATTGCAAAAATCT 57.154 29.630 1.71 0.00 0.00 2.40
2421 2523 9.846248 AGAACTCACATACTTATTGCAAAAATC 57.154 29.630 1.71 0.00 0.00 2.17
2427 2529 9.665719 TCATAAAGAACTCACATACTTATTGCA 57.334 29.630 0.00 0.00 0.00 4.08
2428 2530 9.922305 GTCATAAAGAACTCACATACTTATTGC 57.078 33.333 0.00 0.00 0.00 3.56
2437 2539 9.725019 TCAACATTAGTCATAAAGAACTCACAT 57.275 29.630 0.00 0.00 0.00 3.21
2438 2540 9.208022 CTCAACATTAGTCATAAAGAACTCACA 57.792 33.333 0.00 0.00 0.00 3.58
2439 2541 9.209175 ACTCAACATTAGTCATAAAGAACTCAC 57.791 33.333 0.00 0.00 0.00 3.51
2440 2542 9.424319 GACTCAACATTAGTCATAAAGAACTCA 57.576 33.333 0.00 0.00 42.43 3.41
2441 2543 8.874816 GGACTCAACATTAGTCATAAAGAACTC 58.125 37.037 5.67 0.00 44.25 3.01
2442 2544 8.375506 TGGACTCAACATTAGTCATAAAGAACT 58.624 33.333 5.67 0.00 44.25 3.01
2443 2545 8.547967 TGGACTCAACATTAGTCATAAAGAAC 57.452 34.615 5.67 0.00 44.25 3.01
2444 2546 7.824289 CCTGGACTCAACATTAGTCATAAAGAA 59.176 37.037 5.67 0.00 44.25 2.52
2445 2547 7.331026 CCTGGACTCAACATTAGTCATAAAGA 58.669 38.462 5.67 0.00 44.25 2.52
2446 2548 6.540189 CCCTGGACTCAACATTAGTCATAAAG 59.460 42.308 0.00 0.00 44.25 1.85
2447 2549 6.214615 TCCCTGGACTCAACATTAGTCATAAA 59.785 38.462 0.00 0.00 44.25 1.40
2448 2550 5.724370 TCCCTGGACTCAACATTAGTCATAA 59.276 40.000 0.00 0.00 44.25 1.90
2449 2551 5.277250 TCCCTGGACTCAACATTAGTCATA 58.723 41.667 0.00 0.00 44.25 2.15
2450 2552 4.104086 TCCCTGGACTCAACATTAGTCAT 58.896 43.478 0.00 0.00 44.25 3.06
2451 2553 3.516586 TCCCTGGACTCAACATTAGTCA 58.483 45.455 0.00 0.00 44.25 3.41
2452 2554 4.762289 ATCCCTGGACTCAACATTAGTC 57.238 45.455 0.00 0.00 42.19 2.59
2453 2555 6.831664 ATAATCCCTGGACTCAACATTAGT 57.168 37.500 0.00 0.00 0.00 2.24
2454 2556 6.868864 CGTATAATCCCTGGACTCAACATTAG 59.131 42.308 0.00 0.00 0.00 1.73
2455 2557 6.740401 GCGTATAATCCCTGGACTCAACATTA 60.740 42.308 0.00 0.00 0.00 1.90
2456 2558 5.611374 CGTATAATCCCTGGACTCAACATT 58.389 41.667 0.00 0.00 0.00 2.71
2457 2559 4.503296 GCGTATAATCCCTGGACTCAACAT 60.503 45.833 0.00 0.00 0.00 2.71
2458 2560 3.181469 GCGTATAATCCCTGGACTCAACA 60.181 47.826 0.00 0.00 0.00 3.33
2459 2561 3.181469 TGCGTATAATCCCTGGACTCAAC 60.181 47.826 0.00 0.00 0.00 3.18
2460 2562 3.035363 TGCGTATAATCCCTGGACTCAA 58.965 45.455 0.00 0.00 0.00 3.02
2461 2563 2.364324 GTGCGTATAATCCCTGGACTCA 59.636 50.000 0.00 0.00 0.00 3.41
2462 2564 2.628657 AGTGCGTATAATCCCTGGACTC 59.371 50.000 0.00 0.00 0.00 3.36
2463 2565 2.628657 GAGTGCGTATAATCCCTGGACT 59.371 50.000 0.00 0.00 33.75 3.85
2464 2566 2.628657 AGAGTGCGTATAATCCCTGGAC 59.371 50.000 0.00 0.00 0.00 4.02
2465 2567 2.958818 AGAGTGCGTATAATCCCTGGA 58.041 47.619 0.00 0.00 0.00 3.86
2466 2568 3.753294 AAGAGTGCGTATAATCCCTGG 57.247 47.619 0.00 0.00 0.00 4.45
2467 2569 4.281182 AGGTAAGAGTGCGTATAATCCCTG 59.719 45.833 0.00 0.00 0.00 4.45
2468 2570 4.481072 AGGTAAGAGTGCGTATAATCCCT 58.519 43.478 0.00 0.00 0.00 4.20
2469 2571 4.868314 AGGTAAGAGTGCGTATAATCCC 57.132 45.455 0.00 0.00 0.00 3.85
2470 2572 5.221382 TGGAAGGTAAGAGTGCGTATAATCC 60.221 44.000 0.00 0.00 0.00 3.01
2471 2573 5.839621 TGGAAGGTAAGAGTGCGTATAATC 58.160 41.667 0.00 0.00 0.00 1.75
2472 2574 5.864418 TGGAAGGTAAGAGTGCGTATAAT 57.136 39.130 0.00 0.00 0.00 1.28
2473 2575 5.361571 TGATGGAAGGTAAGAGTGCGTATAA 59.638 40.000 0.00 0.00 0.00 0.98
2474 2576 4.891168 TGATGGAAGGTAAGAGTGCGTATA 59.109 41.667 0.00 0.00 0.00 1.47
2475 2577 3.704566 TGATGGAAGGTAAGAGTGCGTAT 59.295 43.478 0.00 0.00 0.00 3.06
2476 2578 3.093814 TGATGGAAGGTAAGAGTGCGTA 58.906 45.455 0.00 0.00 0.00 4.42
2477 2579 1.899814 TGATGGAAGGTAAGAGTGCGT 59.100 47.619 0.00 0.00 0.00 5.24
2478 2580 2.672961 TGATGGAAGGTAAGAGTGCG 57.327 50.000 0.00 0.00 0.00 5.34
2479 2581 3.065925 GCAATGATGGAAGGTAAGAGTGC 59.934 47.826 0.00 0.00 0.00 4.40
2480 2582 4.521146 AGCAATGATGGAAGGTAAGAGTG 58.479 43.478 0.00 0.00 0.00 3.51
2481 2583 4.851639 AGCAATGATGGAAGGTAAGAGT 57.148 40.909 0.00 0.00 0.00 3.24
2482 2584 4.754114 GCTAGCAATGATGGAAGGTAAGAG 59.246 45.833 10.63 0.00 0.00 2.85
2483 2585 4.444876 GGCTAGCAATGATGGAAGGTAAGA 60.445 45.833 18.24 0.00 0.00 2.10
2484 2586 3.817647 GGCTAGCAATGATGGAAGGTAAG 59.182 47.826 18.24 0.00 0.00 2.34
2485 2587 3.459598 AGGCTAGCAATGATGGAAGGTAA 59.540 43.478 18.24 0.00 0.00 2.85
2486 2588 3.048600 AGGCTAGCAATGATGGAAGGTA 58.951 45.455 18.24 0.00 0.00 3.08
2487 2589 1.849039 AGGCTAGCAATGATGGAAGGT 59.151 47.619 18.24 0.00 0.00 3.50
2488 2590 2.106166 AGAGGCTAGCAATGATGGAAGG 59.894 50.000 18.24 0.00 0.00 3.46
2489 2591 3.488778 AGAGGCTAGCAATGATGGAAG 57.511 47.619 18.24 0.00 0.00 3.46
2490 2592 3.742327 CGAAGAGGCTAGCAATGATGGAA 60.742 47.826 18.24 0.00 0.00 3.53
2491 2593 2.224137 CGAAGAGGCTAGCAATGATGGA 60.224 50.000 18.24 0.00 0.00 3.41
2492 2594 2.141517 CGAAGAGGCTAGCAATGATGG 58.858 52.381 18.24 0.00 0.00 3.51
2493 2595 2.141517 CCGAAGAGGCTAGCAATGATG 58.858 52.381 18.24 1.58 0.00 3.07
2494 2596 1.765314 ACCGAAGAGGCTAGCAATGAT 59.235 47.619 18.24 0.00 46.52 2.45
2495 2597 1.195115 ACCGAAGAGGCTAGCAATGA 58.805 50.000 18.24 0.00 46.52 2.57
2496 2598 2.474816 GTACCGAAGAGGCTAGCAATG 58.525 52.381 18.24 0.00 46.52 2.82
2497 2599 1.413077 GGTACCGAAGAGGCTAGCAAT 59.587 52.381 18.24 3.88 46.52 3.56
2498 2600 0.822164 GGTACCGAAGAGGCTAGCAA 59.178 55.000 18.24 0.00 46.52 3.91
2499 2601 1.381928 CGGTACCGAAGAGGCTAGCA 61.382 60.000 30.64 0.00 46.52 3.49
2500 2602 1.359475 CGGTACCGAAGAGGCTAGC 59.641 63.158 30.64 6.04 46.52 3.42
2501 2603 0.381089 CACGGTACCGAAGAGGCTAG 59.619 60.000 39.52 13.30 46.52 3.42
2502 2604 1.660560 GCACGGTACCGAAGAGGCTA 61.661 60.000 39.52 0.00 46.52 3.93
2503 2605 3.003113 GCACGGTACCGAAGAGGCT 62.003 63.158 39.52 13.69 46.52 4.58
2504 2606 2.508663 GCACGGTACCGAAGAGGC 60.509 66.667 39.52 26.81 46.52 4.70
2506 2608 0.999406 CAATGCACGGTACCGAAGAG 59.001 55.000 39.52 24.64 42.83 2.85
2507 2609 1.017177 GCAATGCACGGTACCGAAGA 61.017 55.000 39.52 21.75 42.83 2.87
2508 2610 1.423845 GCAATGCACGGTACCGAAG 59.576 57.895 39.52 29.33 42.83 3.79
2509 2611 2.036006 GGCAATGCACGGTACCGAA 61.036 57.895 39.52 23.87 42.83 4.30
2510 2612 2.435234 GGCAATGCACGGTACCGA 60.435 61.111 39.52 19.17 42.83 4.69
2511 2613 3.505184 GGGCAATGCACGGTACCG 61.505 66.667 32.22 32.22 46.03 4.02
2512 2614 1.319614 AATGGGCAATGCACGGTACC 61.320 55.000 7.79 0.16 32.76 3.34
2513 2615 0.100503 GAATGGGCAATGCACGGTAC 59.899 55.000 7.79 0.00 32.76 3.34
2514 2616 0.034574 AGAATGGGCAATGCACGGTA 60.035 50.000 7.79 0.00 32.76 4.02
2515 2617 1.304381 AGAATGGGCAATGCACGGT 60.304 52.632 7.79 0.00 32.76 4.83
2516 2618 1.314534 TGAGAATGGGCAATGCACGG 61.315 55.000 7.79 0.00 32.76 4.94
2517 2619 0.179156 GTGAGAATGGGCAATGCACG 60.179 55.000 7.79 0.00 32.76 5.34
2518 2620 0.174162 GGTGAGAATGGGCAATGCAC 59.826 55.000 7.79 3.19 0.00 4.57
2519 2621 0.040058 AGGTGAGAATGGGCAATGCA 59.960 50.000 7.79 0.00 0.00 3.96
2520 2622 1.134907 CAAGGTGAGAATGGGCAATGC 60.135 52.381 0.00 0.00 0.00 3.56
2521 2623 2.449464 TCAAGGTGAGAATGGGCAATG 58.551 47.619 0.00 0.00 0.00 2.82
2522 2624 2.905415 TCAAGGTGAGAATGGGCAAT 57.095 45.000 0.00 0.00 0.00 3.56
2531 2633 9.470713 AAGTTTGCACTAACTCTCAAGGTGAGA 62.471 40.741 4.30 7.68 40.80 3.27
2532 2634 3.667497 TGCACTAACTCTCAAGGTGAG 57.333 47.619 0.00 0.00 45.59 3.51
2533 2635 4.127171 GTTTGCACTAACTCTCAAGGTGA 58.873 43.478 0.00 0.00 0.00 4.02
2534 2636 4.130118 AGTTTGCACTAACTCTCAAGGTG 58.870 43.478 0.00 0.00 33.12 4.00
2535 2637 4.423625 AGTTTGCACTAACTCTCAAGGT 57.576 40.909 0.00 0.00 33.12 3.50
2536 2638 4.084328 CGAAGTTTGCACTAACTCTCAAGG 60.084 45.833 4.30 0.00 37.37 3.61
2537 2639 4.609336 GCGAAGTTTGCACTAACTCTCAAG 60.609 45.833 10.38 0.00 37.37 3.02
2538 2640 3.247648 GCGAAGTTTGCACTAACTCTCAA 59.752 43.478 10.38 0.00 37.37 3.02
2539 2641 2.800544 GCGAAGTTTGCACTAACTCTCA 59.199 45.455 10.38 0.00 37.37 3.27
2540 2642 3.060602 AGCGAAGTTTGCACTAACTCTC 58.939 45.455 17.42 4.50 37.37 3.20
2541 2643 2.802816 CAGCGAAGTTTGCACTAACTCT 59.197 45.455 17.42 0.00 37.37 3.24
2542 2644 2.096218 CCAGCGAAGTTTGCACTAACTC 60.096 50.000 17.42 0.00 37.37 3.01
2543 2645 1.873591 CCAGCGAAGTTTGCACTAACT 59.126 47.619 17.42 0.00 39.97 2.24
2544 2646 1.602377 ACCAGCGAAGTTTGCACTAAC 59.398 47.619 17.42 0.00 30.68 2.34
2545 2647 1.871039 GACCAGCGAAGTTTGCACTAA 59.129 47.619 17.42 0.00 30.68 2.24
2546 2648 1.508632 GACCAGCGAAGTTTGCACTA 58.491 50.000 17.42 0.00 30.68 2.74
2547 2649 1.166531 GGACCAGCGAAGTTTGCACT 61.167 55.000 17.42 0.00 33.11 4.40
2548 2650 1.282875 GGACCAGCGAAGTTTGCAC 59.717 57.895 17.42 5.64 33.85 4.57
2549 2651 0.537143 ATGGACCAGCGAAGTTTGCA 60.537 50.000 17.42 0.00 33.85 4.08
2550 2652 0.169009 GATGGACCAGCGAAGTTTGC 59.831 55.000 7.03 7.03 0.00 3.68
2551 2653 0.804989 GGATGGACCAGCGAAGTTTG 59.195 55.000 3.13 0.00 38.79 2.93
2552 2654 0.400213 TGGATGGACCAGCGAAGTTT 59.600 50.000 3.13 0.00 44.64 2.66
2553 2655 2.066340 TGGATGGACCAGCGAAGTT 58.934 52.632 3.13 0.00 44.64 2.66
2554 2656 3.805928 TGGATGGACCAGCGAAGT 58.194 55.556 3.13 0.00 44.64 3.01
2562 2664 1.677633 CACGGGGTTTGGATGGACC 60.678 63.158 0.00 0.00 39.54 4.46
2563 2665 0.034477 ATCACGGGGTTTGGATGGAC 60.034 55.000 0.00 0.00 0.00 4.02
2564 2666 1.210967 GTATCACGGGGTTTGGATGGA 59.789 52.381 0.00 0.00 0.00 3.41
2565 2667 1.675552 GTATCACGGGGTTTGGATGG 58.324 55.000 0.00 0.00 0.00 3.51
2566 2668 1.134640 TCGTATCACGGGGTTTGGATG 60.135 52.381 0.00 0.00 42.81 3.51
2567 2669 1.196911 TCGTATCACGGGGTTTGGAT 58.803 50.000 0.00 0.00 42.81 3.41
2568 2670 1.196911 ATCGTATCACGGGGTTTGGA 58.803 50.000 0.00 0.00 42.81 3.53
2569 2671 2.476821 GTATCGTATCACGGGGTTTGG 58.523 52.381 0.00 0.00 42.81 3.28
2570 2672 2.121786 CGTATCGTATCACGGGGTTTG 58.878 52.381 0.00 0.00 42.81 2.93
2571 2673 1.536709 GCGTATCGTATCACGGGGTTT 60.537 52.381 0.00 0.00 42.81 3.27
2572 2674 0.031178 GCGTATCGTATCACGGGGTT 59.969 55.000 0.00 0.00 42.81 4.11
2573 2675 0.820891 AGCGTATCGTATCACGGGGT 60.821 55.000 0.00 0.00 42.81 4.95
2574 2676 0.109873 GAGCGTATCGTATCACGGGG 60.110 60.000 0.00 0.00 42.81 5.73
2575 2677 0.873054 AGAGCGTATCGTATCACGGG 59.127 55.000 0.00 0.00 42.81 5.28
2576 2678 3.370061 TGATAGAGCGTATCGTATCACGG 59.630 47.826 0.00 0.00 42.81 4.94
2577 2679 4.143179 TGTGATAGAGCGTATCGTATCACG 60.143 45.833 20.66 5.63 43.30 4.35
2578 2680 5.080731 GTGTGATAGAGCGTATCGTATCAC 58.919 45.833 20.09 20.09 42.26 3.06
2579 2681 4.753107 TGTGTGATAGAGCGTATCGTATCA 59.247 41.667 5.09 0.00 31.36 2.15
2580 2682 5.278964 TGTGTGATAGAGCGTATCGTATC 57.721 43.478 5.09 0.00 0.00 2.24
2581 2683 5.881777 ATGTGTGATAGAGCGTATCGTAT 57.118 39.130 5.09 0.00 0.00 3.06
2582 2684 6.620089 GCTTATGTGTGATAGAGCGTATCGTA 60.620 42.308 5.09 0.00 0.00 3.43
2583 2685 5.684550 TTATGTGTGATAGAGCGTATCGT 57.315 39.130 5.09 0.00 0.00 3.73
2584 2686 4.555360 GCTTATGTGTGATAGAGCGTATCG 59.445 45.833 5.09 0.00 0.00 2.92
2585 2687 4.859798 GGCTTATGTGTGATAGAGCGTATC 59.140 45.833 2.95 2.95 0.00 2.24
2586 2688 4.524714 AGGCTTATGTGTGATAGAGCGTAT 59.475 41.667 0.00 0.00 0.00 3.06
2587 2689 3.889538 AGGCTTATGTGTGATAGAGCGTA 59.110 43.478 0.00 0.00 0.00 4.42
2588 2690 2.695666 AGGCTTATGTGTGATAGAGCGT 59.304 45.455 0.00 0.00 0.00 5.07
2589 2691 3.312828 GAGGCTTATGTGTGATAGAGCG 58.687 50.000 0.00 0.00 0.00 5.03
2590 2692 3.323403 AGGAGGCTTATGTGTGATAGAGC 59.677 47.826 0.00 0.00 0.00 4.09
2591 2693 5.543507 AAGGAGGCTTATGTGTGATAGAG 57.456 43.478 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.