Multiple sequence alignment - TraesCS1D01G052500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G052500 chr1D 100.000 3946 0 0 1 3946 33594595 33598540 0.000000e+00 7287.0
1 TraesCS1D01G052500 chr1D 99.213 381 3 0 3566 3946 423633787 423633407 0.000000e+00 688.0
2 TraesCS1D01G052500 chr1D 98.950 381 3 1 3566 3946 429065857 429066236 0.000000e+00 680.0
3 TraesCS1D01G052500 chr1A 92.136 2683 160 23 691 3365 32110705 32113344 0.000000e+00 3738.0
4 TraesCS1D01G052500 chr1A 91.828 673 44 7 1 666 32110045 32110713 0.000000e+00 928.0
5 TraesCS1D01G052500 chr1A 91.866 209 17 0 3360 3568 32169984 32170192 3.860000e-75 292.0
6 TraesCS1D01G052500 chr1B 92.184 2482 144 14 588 3047 50900097 50902550 0.000000e+00 3463.0
7 TraesCS1D01G052500 chr1B 92.994 2298 123 13 755 3043 50950180 50952448 0.000000e+00 3317.0
8 TraesCS1D01G052500 chr1B 90.690 580 34 12 1 566 50949259 50949832 0.000000e+00 754.0
9 TraesCS1D01G052500 chr1B 88.909 550 46 8 3032 3568 50952469 50953016 0.000000e+00 664.0
10 TraesCS1D01G052500 chr1B 89.189 481 38 9 3099 3568 50923746 50924223 4.390000e-164 588.0
11 TraesCS1D01G052500 chr1B 95.122 164 5 3 1 163 50898782 50898943 5.060000e-64 255.0
12 TraesCS1D01G052500 chr1B 94.444 108 5 1 155 262 50899101 50899207 8.770000e-37 165.0
13 TraesCS1D01G052500 chr1B 86.364 154 13 4 293 439 50899200 50899352 1.130000e-35 161.0
14 TraesCS1D01G052500 chr1B 91.429 70 4 1 3032 3099 50902568 50902637 1.170000e-15 95.3
15 TraesCS1D01G052500 chr1B 97.917 48 1 0 714 761 50949957 50950004 2.530000e-12 84.2
16 TraesCS1D01G052500 chr7D 86.792 2067 229 22 883 2922 497321003 497318954 0.000000e+00 2265.0
17 TraesCS1D01G052500 chr7D 99.211 380 3 0 3567 3946 189768959 189768580 0.000000e+00 686.0
18 TraesCS1D01G052500 chr7A 85.301 2211 262 40 769 2927 563247227 563245028 0.000000e+00 2224.0
19 TraesCS1D01G052500 chr7A 85.341 2142 247 43 857 2943 563293695 563291566 0.000000e+00 2154.0
20 TraesCS1D01G052500 chr7A 87.886 1783 203 11 1142 2919 29009261 29007487 0.000000e+00 2084.0
21 TraesCS1D01G052500 chr4A 88.111 1800 201 10 1142 2938 702327814 702326025 0.000000e+00 2126.0
22 TraesCS1D01G052500 chr4A 78.519 135 20 9 3056 3187 21507291 21507419 3.270000e-11 80.5
23 TraesCS1D01G052500 chr7B 87.709 1798 207 8 1142 2927 525598503 525596708 0.000000e+00 2084.0
24 TraesCS1D01G052500 chr3D 99.211 380 3 0 3567 3946 212112140 212112519 0.000000e+00 686.0
25 TraesCS1D01G052500 chr3D 99.211 380 3 0 3567 3946 536360872 536361251 0.000000e+00 686.0
26 TraesCS1D01G052500 chr6D 98.698 384 3 2 3563 3946 14403300 14402919 0.000000e+00 680.0
27 TraesCS1D01G052500 chr6D 98.950 381 3 1 3566 3946 327612585 327612964 0.000000e+00 680.0
28 TraesCS1D01G052500 chr6D 97.704 392 6 3 3556 3946 413317677 413317288 0.000000e+00 671.0
29 TraesCS1D01G052500 chr4D 97.704 392 7 2 3555 3946 489934142 489933753 0.000000e+00 673.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G052500 chr1D 33594595 33598540 3945 False 7287.00 7287 100.0000 1 3946 1 chr1D.!!$F1 3945
1 TraesCS1D01G052500 chr1A 32110045 32113344 3299 False 2333.00 3738 91.9820 1 3365 2 chr1A.!!$F2 3364
2 TraesCS1D01G052500 chr1B 50949259 50953016 3757 False 1204.80 3317 92.6275 1 3568 4 chr1B.!!$F3 3567
3 TraesCS1D01G052500 chr1B 50898782 50902637 3855 False 827.86 3463 91.9086 1 3099 5 chr1B.!!$F2 3098
4 TraesCS1D01G052500 chr7D 497318954 497321003 2049 True 2265.00 2265 86.7920 883 2922 1 chr7D.!!$R2 2039
5 TraesCS1D01G052500 chr7A 563245028 563247227 2199 True 2224.00 2224 85.3010 769 2927 1 chr7A.!!$R2 2158
6 TraesCS1D01G052500 chr7A 563291566 563293695 2129 True 2154.00 2154 85.3410 857 2943 1 chr7A.!!$R3 2086
7 TraesCS1D01G052500 chr7A 29007487 29009261 1774 True 2084.00 2084 87.8860 1142 2919 1 chr7A.!!$R1 1777
8 TraesCS1D01G052500 chr4A 702326025 702327814 1789 True 2126.00 2126 88.1110 1142 2938 1 chr4A.!!$R1 1796
9 TraesCS1D01G052500 chr7B 525596708 525598503 1795 True 2084.00 2084 87.7090 1142 2927 1 chr7B.!!$R1 1785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 1448 0.172578 TCTACATGGAGTTCACGCCG 59.827 55.0 4.45 0.0 38.78 6.46 F
687 1463 0.510790 CGCCGCGCAAACATGATATA 59.489 50.0 8.75 0.0 0.00 0.86 F
2228 3292 0.706433 AGACCAACCCGGAGTACCTA 59.294 55.0 0.73 0.0 38.63 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2480 3544 0.249784 CATCCTCCTCTGTCATGGCG 60.250 60.0 0.00 0.00 0.00 5.69 R
2489 3553 0.831288 CCTCATCGGCATCCTCCTCT 60.831 60.0 0.00 0.00 0.00 3.69 R
3322 4448 0.032540 TGTCCATCGCCGATGATCTG 59.967 55.0 27.59 11.35 42.09 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 61 7.889469 ACAGTAGTATGTTTTTCTCCGAGTTA 58.111 34.615 0.00 0.00 0.00 2.24
121 127 1.243342 TTGGATGCCGGCTGTTCAAG 61.243 55.000 29.70 0.00 0.00 3.02
294 466 3.067180 GCAGAACACAATCATATGGGTGG 59.933 47.826 19.86 5.37 36.94 4.61
336 508 2.641815 AGACTGGCTGATTCTGAAGGTT 59.358 45.455 0.00 0.00 0.00 3.50
338 510 4.081198 AGACTGGCTGATTCTGAAGGTTAG 60.081 45.833 0.00 0.00 0.00 2.34
339 511 3.584848 ACTGGCTGATTCTGAAGGTTAGT 59.415 43.478 0.00 0.00 0.00 2.24
341 513 4.326826 TGGCTGATTCTGAAGGTTAGTTG 58.673 43.478 0.00 0.00 0.00 3.16
342 514 4.041567 TGGCTGATTCTGAAGGTTAGTTGA 59.958 41.667 0.00 0.00 0.00 3.18
465 646 6.147164 GTCCTCGTTGTATTTTGAATCAGTCA 59.853 38.462 0.00 0.00 0.00 3.41
626 1402 4.892934 AGTTTGACACAAAATAGCAGGGAA 59.107 37.500 0.00 0.00 0.00 3.97
654 1430 4.667519 ACCGTGACAAAGGGATATACTC 57.332 45.455 3.60 0.00 37.26 2.59
655 1431 4.287552 ACCGTGACAAAGGGATATACTCT 58.712 43.478 3.60 0.00 37.26 3.24
656 1432 5.452255 ACCGTGACAAAGGGATATACTCTA 58.548 41.667 3.60 0.00 37.26 2.43
657 1433 5.301298 ACCGTGACAAAGGGATATACTCTAC 59.699 44.000 3.60 0.00 37.26 2.59
658 1434 5.301045 CCGTGACAAAGGGATATACTCTACA 59.699 44.000 0.00 0.00 35.72 2.74
659 1435 6.015350 CCGTGACAAAGGGATATACTCTACAT 60.015 42.308 0.00 0.00 35.72 2.29
660 1436 6.863645 CGTGACAAAGGGATATACTCTACATG 59.136 42.308 0.00 0.00 0.00 3.21
661 1437 7.155328 GTGACAAAGGGATATACTCTACATGG 58.845 42.308 0.00 0.00 0.00 3.66
662 1438 7.015292 GTGACAAAGGGATATACTCTACATGGA 59.985 40.741 0.00 0.00 0.00 3.41
663 1439 7.233553 TGACAAAGGGATATACTCTACATGGAG 59.766 40.741 0.00 0.00 39.09 3.86
664 1440 7.076446 ACAAAGGGATATACTCTACATGGAGT 58.924 38.462 4.45 7.32 46.68 3.85
665 1441 7.569111 ACAAAGGGATATACTCTACATGGAGTT 59.431 37.037 4.45 0.00 43.14 3.01
666 1442 7.784470 AAGGGATATACTCTACATGGAGTTC 57.216 40.000 4.45 0.00 43.14 3.01
667 1443 6.864421 AGGGATATACTCTACATGGAGTTCA 58.136 40.000 4.45 0.00 43.14 3.18
668 1444 6.722129 AGGGATATACTCTACATGGAGTTCAC 59.278 42.308 4.45 1.17 43.14 3.18
669 1445 6.349445 GGGATATACTCTACATGGAGTTCACG 60.349 46.154 4.45 0.00 43.14 4.35
670 1446 2.656560 ACTCTACATGGAGTTCACGC 57.343 50.000 4.45 0.00 43.14 5.34
671 1447 1.204941 ACTCTACATGGAGTTCACGCC 59.795 52.381 4.45 0.00 43.14 5.68
672 1448 0.172578 TCTACATGGAGTTCACGCCG 59.827 55.000 4.45 0.00 38.78 6.46
673 1449 1.421410 CTACATGGAGTTCACGCCGC 61.421 60.000 0.00 0.00 38.78 6.53
674 1450 3.853330 CATGGAGTTCACGCCGCG 61.853 66.667 12.14 12.14 38.78 6.46
678 1454 4.007940 GAGTTCACGCCGCGCAAA 62.008 61.111 13.88 4.38 0.00 3.68
679 1455 4.307908 AGTTCACGCCGCGCAAAC 62.308 61.111 13.88 16.61 0.00 2.93
680 1456 4.599434 GTTCACGCCGCGCAAACA 62.599 61.111 20.05 0.00 0.00 2.83
681 1457 3.655031 TTCACGCCGCGCAAACAT 61.655 55.556 13.88 0.00 0.00 2.71
682 1458 3.870679 TTCACGCCGCGCAAACATG 62.871 57.895 13.88 2.27 0.00 3.21
683 1459 4.382114 CACGCCGCGCAAACATGA 62.382 61.111 13.88 0.00 0.00 3.07
684 1460 3.430862 ACGCCGCGCAAACATGAT 61.431 55.556 13.88 0.00 0.00 2.45
685 1461 2.103647 ACGCCGCGCAAACATGATA 61.104 52.632 13.88 0.00 0.00 2.15
686 1462 1.279539 CGCCGCGCAAACATGATAT 59.720 52.632 8.75 0.00 0.00 1.63
687 1463 0.510790 CGCCGCGCAAACATGATATA 59.489 50.000 8.75 0.00 0.00 0.86
688 1464 1.128507 CGCCGCGCAAACATGATATAT 59.871 47.619 8.75 0.00 0.00 0.86
689 1465 2.508867 GCCGCGCAAACATGATATATG 58.491 47.619 8.75 0.00 0.00 1.78
694 1470 3.302434 GCGCAAACATGATATATGCATGC 59.698 43.478 11.82 11.82 45.32 4.06
710 1527 5.378292 TGCATGCAGTTAATAACGGAAAA 57.622 34.783 18.46 0.00 36.23 2.29
712 1529 5.631512 TGCATGCAGTTAATAACGGAAAAAC 59.368 36.000 18.46 0.00 36.23 2.43
757 1574 3.126343 GGTGACGAAAATGGTCCATGTAC 59.874 47.826 4.74 0.00 33.46 2.90
804 1802 3.059051 TGGCAATTTACGAACGTTACCAC 60.059 43.478 0.00 0.00 0.00 4.16
1036 2077 4.381411 GCCTATGTACTTCATCCTCCAAC 58.619 47.826 0.00 0.00 37.91 3.77
1150 2211 3.499918 CCACACAGTCTTGCTCCTAAAAG 59.500 47.826 0.00 0.00 0.00 2.27
1179 2240 0.968405 CTTGGACACCAACCCAATGG 59.032 55.000 0.00 0.00 46.38 3.16
1406 2470 0.907486 CCATGAAGGAGCTCAGGACA 59.093 55.000 17.19 10.03 41.22 4.02
1457 2521 1.179174 GCCCCAACTTCTTCGCCTTT 61.179 55.000 0.00 0.00 0.00 3.11
1917 2981 3.571401 TCTCGAGATCATGCAAGCTGATA 59.429 43.478 12.08 0.00 33.56 2.15
2228 3292 0.706433 AGACCAACCCGGAGTACCTA 59.294 55.000 0.73 0.00 38.63 3.08
2414 3478 2.811431 TGAAGATTTTGTTCGTGCCGAT 59.189 40.909 0.00 0.00 35.23 4.18
2459 3523 1.139058 AGGAACTTTGCTCTCGTGTGT 59.861 47.619 0.00 0.00 27.25 3.72
2489 3553 3.364441 GCAACTGGCGCCATGACA 61.364 61.111 32.87 6.37 0.00 3.58
2537 3601 4.197750 GTGTGCTCATGGAGAATCTGAAT 58.802 43.478 0.00 0.00 33.73 2.57
2702 3766 6.386927 TGGATTAAGTGAATGGACCTACAGAT 59.613 38.462 0.00 0.00 0.00 2.90
2976 4055 9.702253 ATATATGGGAGTGACTTATAGTAGGTG 57.298 37.037 0.00 0.00 0.00 4.00
2977 4056 5.461516 TGGGAGTGACTTATAGTAGGTGA 57.538 43.478 0.00 0.00 0.00 4.02
2980 4059 5.299782 GGGAGTGACTTATAGTAGGTGACTG 59.700 48.000 0.00 0.00 43.88 3.51
2981 4060 5.221087 GGAGTGACTTATAGTAGGTGACTGC 60.221 48.000 0.00 0.00 43.88 4.40
3027 4107 7.545965 CACTTTCTTGTTAGACCGTGAGATTAT 59.454 37.037 0.00 0.00 34.85 1.28
3035 4115 4.517285 AGACCGTGAGATTATTGCAACAT 58.483 39.130 0.00 0.00 0.00 2.71
3039 4119 5.048083 ACCGTGAGATTATTGCAACATGTTT 60.048 36.000 8.77 0.00 0.00 2.83
3110 4224 2.396590 TGAAAGTAAGATCACCGGGC 57.603 50.000 6.32 0.00 0.00 6.13
3128 4242 2.356741 GGGCTAGCCTAACCAAACATGA 60.357 50.000 32.18 0.00 36.10 3.07
3132 4246 2.858745 AGCCTAACCAAACATGACGTT 58.141 42.857 0.00 0.00 40.50 3.99
3150 4264 5.963594 GACGTTGAGTCCCTAAAGTAAGAT 58.036 41.667 0.00 0.00 43.95 2.40
3159 4273 6.156949 AGTCCCTAAAGTAAGATCATGCTTCA 59.843 38.462 1.70 0.00 0.00 3.02
3195 4309 3.558321 CCCGACATTTGAGGTCCTAAACA 60.558 47.826 0.00 0.00 31.55 2.83
3284 4402 4.567558 TGCTGGTTTATGTATTTACGACCG 59.432 41.667 0.00 0.00 0.00 4.79
3292 4410 3.772932 TGTATTTACGACCGCCTTACAG 58.227 45.455 0.00 0.00 0.00 2.74
3293 4411 3.193267 TGTATTTACGACCGCCTTACAGT 59.807 43.478 0.00 0.00 0.00 3.55
3294 4412 2.352503 TTTACGACCGCCTTACAGTC 57.647 50.000 0.00 0.00 0.00 3.51
3296 4414 0.608856 TACGACCGCCTTACAGTCCA 60.609 55.000 0.00 0.00 0.00 4.02
3302 4428 1.635663 CGCCTTACAGTCCAAAGCCG 61.636 60.000 0.00 0.00 0.00 5.52
3322 4448 1.134371 GCCTGAATCCTCTGGGTGTAC 60.134 57.143 0.94 0.00 40.25 2.90
3336 4462 1.000163 GGTGTACAGATCATCGGCGAT 60.000 52.381 18.14 18.14 0.00 4.58
3337 4463 2.054363 GTGTACAGATCATCGGCGATG 58.946 52.381 37.07 37.07 41.00 3.84
3356 4482 1.141254 TGGACAACGCTTTCCTTACCA 59.859 47.619 0.00 0.00 32.55 3.25
3368 4494 3.586470 TCCTTACCACCAAAGCTTCAA 57.414 42.857 0.00 0.00 0.00 2.69
3374 4500 1.341209 CCACCAAAGCTTCAAGGGTTC 59.659 52.381 14.70 0.00 0.00 3.62
3394 4520 5.495640 GTTCTTGGGTCAGAGATCTTTGAT 58.504 41.667 18.08 0.00 0.00 2.57
3399 4525 3.432890 GGGTCAGAGATCTTTGATCCCAC 60.433 52.174 27.84 10.72 38.42 4.61
3437 4563 4.021102 AGAAACATCCAAAGGTCATCGT 57.979 40.909 0.00 0.00 0.00 3.73
3438 4564 4.398319 AGAAACATCCAAAGGTCATCGTT 58.602 39.130 0.00 0.00 0.00 3.85
3449 4575 1.606994 GGTCATCGTTGCACACTACCA 60.607 52.381 0.00 0.00 0.00 3.25
3458 4584 1.140852 TGCACACTACCAGAACTGCTT 59.859 47.619 0.00 0.00 0.00 3.91
3459 4585 2.222027 GCACACTACCAGAACTGCTTT 58.778 47.619 0.00 0.00 0.00 3.51
3461 4587 3.466836 CACACTACCAGAACTGCTTTCA 58.533 45.455 0.00 0.00 36.57 2.69
3463 4589 2.808543 CACTACCAGAACTGCTTTCACC 59.191 50.000 0.00 0.00 36.57 4.02
3494 4620 4.832266 TCCTTGTCAAAGCCACATAAATGT 59.168 37.500 0.00 0.00 35.12 2.71
3549 4675 0.741915 TGTTTTGGTCTGTTTCCCGC 59.258 50.000 0.00 0.00 0.00 6.13
3571 4697 2.257353 CCGGAGGCAAACTTGAAGG 58.743 57.895 0.00 0.00 46.14 3.46
3572 4698 0.250727 CCGGAGGCAAACTTGAAGGA 60.251 55.000 0.00 0.00 46.14 3.36
3573 4699 1.604604 CGGAGGCAAACTTGAAGGAA 58.395 50.000 0.00 0.00 0.00 3.36
3574 4700 1.953686 CGGAGGCAAACTTGAAGGAAA 59.046 47.619 0.00 0.00 0.00 3.13
3575 4701 2.558359 CGGAGGCAAACTTGAAGGAAAT 59.442 45.455 0.00 0.00 0.00 2.17
3576 4702 3.756434 CGGAGGCAAACTTGAAGGAAATA 59.244 43.478 0.00 0.00 0.00 1.40
3577 4703 4.399303 CGGAGGCAAACTTGAAGGAAATAT 59.601 41.667 0.00 0.00 0.00 1.28
3578 4704 5.654497 GGAGGCAAACTTGAAGGAAATATG 58.346 41.667 0.00 0.00 0.00 1.78
3579 4705 5.077134 AGGCAAACTTGAAGGAAATATGC 57.923 39.130 0.00 0.00 0.00 3.14
3580 4706 4.183865 GGCAAACTTGAAGGAAATATGCC 58.816 43.478 0.00 3.59 43.31 4.40
3581 4707 4.183865 GCAAACTTGAAGGAAATATGCCC 58.816 43.478 0.00 0.00 0.00 5.36
3582 4708 4.081476 GCAAACTTGAAGGAAATATGCCCT 60.081 41.667 0.00 0.00 0.00 5.19
3583 4709 5.127031 GCAAACTTGAAGGAAATATGCCCTA 59.873 40.000 0.00 0.00 31.36 3.53
3584 4710 6.681368 GCAAACTTGAAGGAAATATGCCCTAG 60.681 42.308 0.00 0.00 31.36 3.02
3585 4711 5.975988 ACTTGAAGGAAATATGCCCTAGA 57.024 39.130 0.00 0.00 31.36 2.43
3586 4712 5.934781 ACTTGAAGGAAATATGCCCTAGAG 58.065 41.667 0.00 0.00 31.36 2.43
3587 4713 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
3663 4789 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
3664 4790 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
3665 4791 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
3666 4792 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
3667 4793 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
3668 4794 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
3669 4795 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
3670 4796 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
3678 4804 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
3679 4805 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
3680 4806 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
3681 4807 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
3682 4808 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
3683 4809 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
3684 4810 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
3685 4811 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
3686 4812 8.067784 CCGGAAACATAATACATGTGTGAATAC 58.932 37.037 9.11 0.00 31.80 1.89
3687 4813 8.608317 CGGAAACATAATACATGTGTGAATACA 58.392 33.333 9.11 0.00 34.63 2.29
3697 4823 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
3698 4824 8.565896 ACATGTGTGAATACATAGACAAACAT 57.434 30.769 0.00 0.00 40.42 2.71
3699 4825 9.665719 ACATGTGTGAATACATAGACAAACATA 57.334 29.630 0.00 0.00 38.58 2.29
3701 4827 9.890629 ATGTGTGAATACATAGACAAACATAGT 57.109 29.630 0.00 0.00 38.77 2.12
3702 4828 9.150348 TGTGTGAATACATAGACAAACATAGTG 57.850 33.333 0.00 0.00 39.39 2.74
3703 4829 9.151471 GTGTGAATACATAGACAAACATAGTGT 57.849 33.333 0.00 0.00 39.39 3.55
3704 4830 9.366216 TGTGAATACATAGACAAACATAGTGTC 57.634 33.333 0.00 0.00 44.75 3.67
3705 4831 9.366216 GTGAATACATAGACAAACATAGTGTCA 57.634 33.333 7.26 0.00 46.44 3.58
3706 4832 9.366216 TGAATACATAGACAAACATAGTGTCAC 57.634 33.333 7.26 0.00 46.44 3.67
3707 4833 9.587772 GAATACATAGACAAACATAGTGTCACT 57.412 33.333 10.99 10.99 46.44 3.41
3710 4836 8.123639 ACATAGACAAACATAGTGTCACTAGT 57.876 34.615 17.43 12.40 46.44 2.57
3711 4837 9.239551 ACATAGACAAACATAGTGTCACTAGTA 57.760 33.333 17.43 0.00 46.44 1.82
3714 4840 7.036220 AGACAAACATAGTGTCACTAGTATGC 58.964 38.462 17.43 9.88 46.44 3.14
3715 4841 6.106673 ACAAACATAGTGTCACTAGTATGCC 58.893 40.000 17.43 0.00 37.44 4.40
3716 4842 6.070767 ACAAACATAGTGTCACTAGTATGCCT 60.071 38.462 17.43 2.21 37.44 4.75
3717 4843 5.776173 ACATAGTGTCACTAGTATGCCTC 57.224 43.478 17.43 0.00 37.44 4.70
3718 4844 5.450453 ACATAGTGTCACTAGTATGCCTCT 58.550 41.667 17.43 0.00 37.44 3.69
3719 4845 6.602278 ACATAGTGTCACTAGTATGCCTCTA 58.398 40.000 17.43 0.00 37.44 2.43
3720 4846 6.487331 ACATAGTGTCACTAGTATGCCTCTAC 59.513 42.308 17.43 0.00 37.44 2.59
3721 4847 5.118729 AGTGTCACTAGTATGCCTCTACT 57.881 43.478 2.87 0.00 36.04 2.57
3722 4848 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
3723 4849 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
3724 4850 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
3725 4851 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
3726 4852 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
3727 4853 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
3728 4854 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
3729 4855 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
3730 4856 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
3731 4857 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
3732 4858 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
3733 4859 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
3734 4860 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
3735 4861 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
3736 4862 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
3737 4863 4.336993 CCTCTACTTGACTAGCTCGTTGAT 59.663 45.833 0.00 0.00 0.00 2.57
3738 4864 5.487153 TCTACTTGACTAGCTCGTTGATC 57.513 43.478 0.00 0.00 0.00 2.92
3739 4865 4.941873 TCTACTTGACTAGCTCGTTGATCA 59.058 41.667 0.00 0.00 0.00 2.92
3740 4866 4.521130 ACTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
3741 4867 4.883083 ACTTGACTAGCTCGTTGATCAAA 58.117 39.130 10.35 0.00 0.00 2.69
3742 4868 4.926238 ACTTGACTAGCTCGTTGATCAAAG 59.074 41.667 10.35 12.64 0.00 2.77
3743 4869 4.783764 TGACTAGCTCGTTGATCAAAGA 57.216 40.909 20.62 20.62 0.00 2.52
3744 4870 5.330455 TGACTAGCTCGTTGATCAAAGAT 57.670 39.130 21.83 12.82 0.00 2.40
3745 4871 5.105063 TGACTAGCTCGTTGATCAAAGATG 58.895 41.667 21.83 16.63 0.00 2.90
3746 4872 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
3747 4873 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
3748 4874 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
3749 4875 4.832248 AGCTCGTTGATCAAAGATGGTTA 58.168 39.130 21.83 1.90 0.00 2.85
3750 4876 5.431765 AGCTCGTTGATCAAAGATGGTTAT 58.568 37.500 21.83 4.91 0.00 1.89
3751 4877 5.295292 AGCTCGTTGATCAAAGATGGTTATG 59.705 40.000 21.83 11.16 0.00 1.90
3752 4878 5.065218 GCTCGTTGATCAAAGATGGTTATGT 59.935 40.000 21.83 0.00 0.00 2.29
3753 4879 6.403636 GCTCGTTGATCAAAGATGGTTATGTT 60.404 38.462 21.83 0.00 0.00 2.71
3754 4880 7.447374 TCGTTGATCAAAGATGGTTATGTTT 57.553 32.000 18.50 0.00 30.61 2.83
3755 4881 7.526608 TCGTTGATCAAAGATGGTTATGTTTC 58.473 34.615 18.50 0.00 28.23 2.78
3756 4882 6.747280 CGTTGATCAAAGATGGTTATGTTTCC 59.253 38.462 15.34 0.00 28.23 3.13
3757 4883 7.362056 CGTTGATCAAAGATGGTTATGTTTCCT 60.362 37.037 15.34 0.00 28.23 3.36
3758 4884 8.956426 GTTGATCAAAGATGGTTATGTTTCCTA 58.044 33.333 10.35 0.00 28.23 2.94
3759 4885 8.737168 TGATCAAAGATGGTTATGTTTCCTAG 57.263 34.615 0.00 0.00 28.23 3.02
3760 4886 7.283127 TGATCAAAGATGGTTATGTTTCCTAGC 59.717 37.037 0.00 0.00 28.23 3.42
3761 4887 5.885912 TCAAAGATGGTTATGTTTCCTAGCC 59.114 40.000 0.00 0.00 28.23 3.93
3762 4888 5.450818 AAGATGGTTATGTTTCCTAGCCA 57.549 39.130 0.00 0.00 34.50 4.75
3763 4889 5.653255 AGATGGTTATGTTTCCTAGCCAT 57.347 39.130 0.00 0.00 41.28 4.40
3764 4890 6.763715 AGATGGTTATGTTTCCTAGCCATA 57.236 37.500 0.00 0.00 39.44 2.74
3765 4891 6.773638 AGATGGTTATGTTTCCTAGCCATAG 58.226 40.000 0.00 0.00 39.44 2.23
3766 4892 6.558775 AGATGGTTATGTTTCCTAGCCATAGA 59.441 38.462 0.00 0.00 39.44 1.98
3767 4893 5.925509 TGGTTATGTTTCCTAGCCATAGAC 58.074 41.667 0.00 0.00 0.00 2.59
3768 4894 5.427157 TGGTTATGTTTCCTAGCCATAGACA 59.573 40.000 0.00 0.00 0.00 3.41
3769 4895 6.101150 TGGTTATGTTTCCTAGCCATAGACAT 59.899 38.462 0.00 0.00 32.04 3.06
3770 4896 6.428159 GGTTATGTTTCCTAGCCATAGACATG 59.572 42.308 0.00 0.00 30.64 3.21
3771 4897 5.894298 ATGTTTCCTAGCCATAGACATGA 57.106 39.130 0.00 0.00 33.67 3.07
3772 4898 5.282055 TGTTTCCTAGCCATAGACATGAG 57.718 43.478 0.00 0.00 33.67 2.90
3773 4899 4.716784 TGTTTCCTAGCCATAGACATGAGT 59.283 41.667 0.00 0.00 33.67 3.41
3774 4900 5.189736 TGTTTCCTAGCCATAGACATGAGTT 59.810 40.000 0.00 0.00 33.67 3.01
3775 4901 4.944619 TCCTAGCCATAGACATGAGTTG 57.055 45.455 0.00 0.00 33.67 3.16
3776 4902 4.290093 TCCTAGCCATAGACATGAGTTGT 58.710 43.478 0.00 0.00 42.79 3.32
3777 4903 4.716784 TCCTAGCCATAGACATGAGTTGTT 59.283 41.667 0.00 0.00 39.18 2.83
3778 4904 5.897250 TCCTAGCCATAGACATGAGTTGTTA 59.103 40.000 0.00 0.00 39.18 2.41
3779 4905 6.554982 TCCTAGCCATAGACATGAGTTGTTAT 59.445 38.462 0.00 0.00 39.18 1.89
3780 4906 7.071196 TCCTAGCCATAGACATGAGTTGTTATT 59.929 37.037 0.00 0.00 39.18 1.40
3781 4907 7.716998 CCTAGCCATAGACATGAGTTGTTATTT 59.283 37.037 0.00 0.00 39.18 1.40
3782 4908 7.325660 AGCCATAGACATGAGTTGTTATTTG 57.674 36.000 0.00 0.00 39.18 2.32
3783 4909 7.112122 AGCCATAGACATGAGTTGTTATTTGA 58.888 34.615 0.00 0.00 39.18 2.69
3784 4910 7.776969 AGCCATAGACATGAGTTGTTATTTGAT 59.223 33.333 0.00 0.00 39.18 2.57
3785 4911 8.408601 GCCATAGACATGAGTTGTTATTTGATT 58.591 33.333 0.00 0.00 39.18 2.57
3790 4916 8.450964 AGACATGAGTTGTTATTTGATTAACGG 58.549 33.333 0.00 0.00 39.18 4.44
3791 4917 7.535139 ACATGAGTTGTTATTTGATTAACGGG 58.465 34.615 0.00 0.00 33.74 5.28
3792 4918 7.392113 ACATGAGTTGTTATTTGATTAACGGGA 59.608 33.333 0.00 0.00 33.74 5.14
3793 4919 7.931578 TGAGTTGTTATTTGATTAACGGGAT 57.068 32.000 0.00 0.00 35.30 3.85
3794 4920 7.981142 TGAGTTGTTATTTGATTAACGGGATC 58.019 34.615 0.00 0.00 35.30 3.36
3795 4921 7.608376 TGAGTTGTTATTTGATTAACGGGATCA 59.392 33.333 0.00 0.00 35.30 2.92
3796 4922 7.758495 AGTTGTTATTTGATTAACGGGATCAC 58.242 34.615 0.00 0.00 35.30 3.06
3797 4923 7.392113 AGTTGTTATTTGATTAACGGGATCACA 59.608 33.333 0.00 0.00 35.30 3.58
3798 4924 7.873719 TGTTATTTGATTAACGGGATCACAT 57.126 32.000 0.00 0.00 35.30 3.21
3799 4925 7.925993 TGTTATTTGATTAACGGGATCACATC 58.074 34.615 0.00 0.00 35.30 3.06
3800 4926 7.554476 TGTTATTTGATTAACGGGATCACATCA 59.446 33.333 0.00 0.00 35.30 3.07
3801 4927 8.567948 GTTATTTGATTAACGGGATCACATCAT 58.432 33.333 0.00 0.00 33.51 2.45
3802 4928 7.587037 ATTTGATTAACGGGATCACATCATT 57.413 32.000 0.00 0.00 33.51 2.57
3803 4929 8.690203 ATTTGATTAACGGGATCACATCATTA 57.310 30.769 0.00 0.00 33.51 1.90
3804 4930 7.728847 TTGATTAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 33.51 1.73
3805 4931 6.230472 TGATTAACGGGATCACATCATTAGG 58.770 40.000 0.00 0.00 0.00 2.69
3806 4932 5.880164 TTAACGGGATCACATCATTAGGA 57.120 39.130 0.00 0.00 0.00 2.94
3807 4933 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
3808 4934 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
3809 4935 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
3810 4936 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
3811 4937 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
3812 4938 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
3813 4939 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
3822 4948 8.618702 ATCATTAGGAGAATGATGTGATTGAC 57.381 34.615 11.08 0.00 43.52 3.18
3823 4949 7.799081 TCATTAGGAGAATGATGTGATTGACT 58.201 34.615 0.00 0.00 32.21 3.41
3824 4950 8.270030 TCATTAGGAGAATGATGTGATTGACTT 58.730 33.333 0.00 0.00 32.21 3.01
3825 4951 7.854557 TTAGGAGAATGATGTGATTGACTTG 57.145 36.000 0.00 0.00 0.00 3.16
3826 4952 6.058553 AGGAGAATGATGTGATTGACTTGA 57.941 37.500 0.00 0.00 0.00 3.02
3827 4953 5.879223 AGGAGAATGATGTGATTGACTTGAC 59.121 40.000 0.00 0.00 0.00 3.18
3828 4954 5.065731 GGAGAATGATGTGATTGACTTGACC 59.934 44.000 0.00 0.00 0.00 4.02
3829 4955 4.946157 AGAATGATGTGATTGACTTGACCC 59.054 41.667 0.00 0.00 0.00 4.46
3830 4956 3.786368 TGATGTGATTGACTTGACCCA 57.214 42.857 0.00 0.00 0.00 4.51
3831 4957 4.305539 TGATGTGATTGACTTGACCCAT 57.694 40.909 0.00 0.00 0.00 4.00
3832 4958 4.665451 TGATGTGATTGACTTGACCCATT 58.335 39.130 0.00 0.00 0.00 3.16
3833 4959 4.701651 TGATGTGATTGACTTGACCCATTC 59.298 41.667 0.00 0.00 0.00 2.67
3834 4960 3.420893 TGTGATTGACTTGACCCATTCC 58.579 45.455 0.00 0.00 0.00 3.01
3835 4961 2.420022 GTGATTGACTTGACCCATTCCG 59.580 50.000 0.00 0.00 0.00 4.30
3836 4962 2.039746 TGATTGACTTGACCCATTCCGT 59.960 45.455 0.00 0.00 0.00 4.69
3837 4963 2.649531 TTGACTTGACCCATTCCGTT 57.350 45.000 0.00 0.00 0.00 4.44
3838 4964 3.773418 TTGACTTGACCCATTCCGTTA 57.227 42.857 0.00 0.00 0.00 3.18
3839 4965 3.328382 TGACTTGACCCATTCCGTTAG 57.672 47.619 0.00 0.00 0.00 2.34
3840 4966 2.007608 GACTTGACCCATTCCGTTAGC 58.992 52.381 0.00 0.00 0.00 3.09
3841 4967 1.628846 ACTTGACCCATTCCGTTAGCT 59.371 47.619 0.00 0.00 0.00 3.32
3842 4968 2.039879 ACTTGACCCATTCCGTTAGCTT 59.960 45.455 0.00 0.00 0.00 3.74
3843 4969 3.262405 ACTTGACCCATTCCGTTAGCTTA 59.738 43.478 0.00 0.00 0.00 3.09
3844 4970 3.536956 TGACCCATTCCGTTAGCTTAG 57.463 47.619 0.00 0.00 0.00 2.18
3845 4971 2.210961 GACCCATTCCGTTAGCTTAGC 58.789 52.381 0.00 0.00 0.00 3.09
3846 4972 1.557832 ACCCATTCCGTTAGCTTAGCA 59.442 47.619 7.07 0.00 0.00 3.49
3847 4973 1.940613 CCCATTCCGTTAGCTTAGCAC 59.059 52.381 7.07 0.00 0.00 4.40
3848 4974 2.627945 CCATTCCGTTAGCTTAGCACA 58.372 47.619 7.07 0.00 0.00 4.57
3849 4975 2.351726 CCATTCCGTTAGCTTAGCACAC 59.648 50.000 7.07 1.09 0.00 3.82
3850 4976 1.705256 TTCCGTTAGCTTAGCACACG 58.295 50.000 17.58 17.58 36.47 4.49
3851 4977 0.883153 TCCGTTAGCTTAGCACACGA 59.117 50.000 23.57 11.12 38.10 4.35
3852 4978 1.475280 TCCGTTAGCTTAGCACACGAT 59.525 47.619 23.57 0.00 38.10 3.73
3853 4979 1.852895 CCGTTAGCTTAGCACACGATC 59.147 52.381 23.57 1.02 38.10 3.69
3854 4980 1.513178 CGTTAGCTTAGCACACGATCG 59.487 52.381 19.12 14.88 38.10 3.69
3855 4981 2.527100 GTTAGCTTAGCACACGATCGT 58.473 47.619 16.60 16.60 0.00 3.73
3856 4982 2.921754 GTTAGCTTAGCACACGATCGTT 59.078 45.455 20.14 6.72 0.00 3.85
3857 4983 2.080286 AGCTTAGCACACGATCGTTT 57.920 45.000 20.14 10.13 0.00 3.60
3858 4984 3.226346 AGCTTAGCACACGATCGTTTA 57.774 42.857 20.14 6.25 0.00 2.01
3859 4985 3.179830 AGCTTAGCACACGATCGTTTAG 58.820 45.455 20.14 10.44 0.00 1.85
3860 4986 2.921754 GCTTAGCACACGATCGTTTAGT 59.078 45.455 20.14 11.17 0.00 2.24
3861 4987 4.100529 GCTTAGCACACGATCGTTTAGTA 58.899 43.478 20.14 5.55 0.00 1.82
3862 4988 4.738740 GCTTAGCACACGATCGTTTAGTAT 59.261 41.667 20.14 8.43 0.00 2.12
3863 4989 5.231568 GCTTAGCACACGATCGTTTAGTATT 59.768 40.000 20.14 7.77 0.00 1.89
3864 4990 6.559886 GCTTAGCACACGATCGTTTAGTATTC 60.560 42.308 20.14 6.60 0.00 1.75
3865 4991 4.995124 AGCACACGATCGTTTAGTATTCT 58.005 39.130 20.14 8.63 0.00 2.40
3866 4992 4.798907 AGCACACGATCGTTTAGTATTCTG 59.201 41.667 20.14 5.73 0.00 3.02
3867 4993 4.548346 GCACACGATCGTTTAGTATTCTGC 60.548 45.833 20.14 9.16 0.00 4.26
3868 4994 4.798907 CACACGATCGTTTAGTATTCTGCT 59.201 41.667 20.14 0.00 0.00 4.24
3869 4995 5.969435 CACACGATCGTTTAGTATTCTGCTA 59.031 40.000 20.14 0.00 0.00 3.49
3870 4996 6.637254 CACACGATCGTTTAGTATTCTGCTAT 59.363 38.462 20.14 0.00 0.00 2.97
3871 4997 7.167635 CACACGATCGTTTAGTATTCTGCTATT 59.832 37.037 20.14 0.00 0.00 1.73
3872 4998 7.167635 ACACGATCGTTTAGTATTCTGCTATTG 59.832 37.037 20.14 3.02 0.00 1.90
3873 4999 6.144080 ACGATCGTTTAGTATTCTGCTATTGC 59.856 38.462 16.60 0.00 40.20 3.56
3874 5000 6.363626 CGATCGTTTAGTATTCTGCTATTGCT 59.636 38.462 7.03 0.00 40.48 3.91
3875 5001 7.096023 CGATCGTTTAGTATTCTGCTATTGCTT 60.096 37.037 7.03 0.00 40.48 3.91
3876 5002 7.843490 TCGTTTAGTATTCTGCTATTGCTTT 57.157 32.000 0.00 0.00 40.48 3.51
3877 5003 7.906160 TCGTTTAGTATTCTGCTATTGCTTTC 58.094 34.615 0.00 0.00 40.48 2.62
3878 5004 7.764443 TCGTTTAGTATTCTGCTATTGCTTTCT 59.236 33.333 0.00 0.00 40.48 2.52
3879 5005 8.391106 CGTTTAGTATTCTGCTATTGCTTTCTT 58.609 33.333 0.00 0.00 40.48 2.52
3880 5006 9.709600 GTTTAGTATTCTGCTATTGCTTTCTTC 57.290 33.333 0.00 0.00 40.48 2.87
3881 5007 9.448438 TTTAGTATTCTGCTATTGCTTTCTTCA 57.552 29.630 0.00 0.00 40.48 3.02
3882 5008 9.618890 TTAGTATTCTGCTATTGCTTTCTTCAT 57.381 29.630 0.00 0.00 40.48 2.57
3883 5009 7.928103 AGTATTCTGCTATTGCTTTCTTCATG 58.072 34.615 0.00 0.00 40.48 3.07
3884 5010 7.772292 AGTATTCTGCTATTGCTTTCTTCATGA 59.228 33.333 0.00 0.00 40.48 3.07
3885 5011 5.808042 TCTGCTATTGCTTTCTTCATGAC 57.192 39.130 0.00 0.00 40.48 3.06
3886 5012 5.494724 TCTGCTATTGCTTTCTTCATGACT 58.505 37.500 0.00 0.00 40.48 3.41
3887 5013 5.942236 TCTGCTATTGCTTTCTTCATGACTT 59.058 36.000 0.00 0.00 40.48 3.01
3888 5014 7.105588 TCTGCTATTGCTTTCTTCATGACTTA 58.894 34.615 0.00 0.00 40.48 2.24
3889 5015 7.772292 TCTGCTATTGCTTTCTTCATGACTTAT 59.228 33.333 0.00 0.00 40.48 1.73
3890 5016 8.962884 TGCTATTGCTTTCTTCATGACTTATA 57.037 30.769 0.00 0.00 40.48 0.98
3891 5017 8.830580 TGCTATTGCTTTCTTCATGACTTATAC 58.169 33.333 0.00 0.00 40.48 1.47
3892 5018 8.830580 GCTATTGCTTTCTTCATGACTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
3895 5021 8.565896 TTGCTTTCTTCATGACTTATACATGT 57.434 30.769 2.69 2.69 43.56 3.21
3896 5022 8.565896 TGCTTTCTTCATGACTTATACATGTT 57.434 30.769 2.30 0.00 43.56 2.71
3897 5023 8.668353 TGCTTTCTTCATGACTTATACATGTTC 58.332 33.333 2.30 0.00 43.56 3.18
3898 5024 8.125448 GCTTTCTTCATGACTTATACATGTTCC 58.875 37.037 2.30 0.00 43.56 3.62
3899 5025 9.388506 CTTTCTTCATGACTTATACATGTTCCT 57.611 33.333 2.30 0.00 43.56 3.36
3902 5028 9.987272 TCTTCATGACTTATACATGTTCCTATG 57.013 33.333 2.30 1.10 43.56 2.23
3903 5029 9.987272 CTTCATGACTTATACATGTTCCTATGA 57.013 33.333 2.30 3.47 43.56 2.15
3904 5030 9.764363 TTCATGACTTATACATGTTCCTATGAC 57.236 33.333 2.30 0.00 43.56 3.06
3905 5031 9.147732 TCATGACTTATACATGTTCCTATGACT 57.852 33.333 2.30 0.00 43.56 3.41
3917 5043 9.096160 CATGTTCCTATGACTATGAGATTATGC 57.904 37.037 0.00 0.00 0.00 3.14
3918 5044 8.193953 TGTTCCTATGACTATGAGATTATGCA 57.806 34.615 0.00 0.00 0.00 3.96
3919 5045 8.650490 TGTTCCTATGACTATGAGATTATGCAA 58.350 33.333 0.00 0.00 0.00 4.08
3920 5046 8.930760 GTTCCTATGACTATGAGATTATGCAAC 58.069 37.037 0.00 0.00 0.00 4.17
3921 5047 8.427902 TCCTATGACTATGAGATTATGCAACT 57.572 34.615 0.00 0.00 0.00 3.16
3922 5048 8.526978 TCCTATGACTATGAGATTATGCAACTC 58.473 37.037 0.00 0.00 0.00 3.01
3923 5049 7.763528 CCTATGACTATGAGATTATGCAACTCC 59.236 40.741 0.00 0.00 0.00 3.85
3924 5050 5.858381 TGACTATGAGATTATGCAACTCCC 58.142 41.667 0.00 0.00 0.00 4.30
3925 5051 4.887748 ACTATGAGATTATGCAACTCCCG 58.112 43.478 0.00 0.00 0.00 5.14
3926 5052 3.845781 ATGAGATTATGCAACTCCCGT 57.154 42.857 0.00 0.00 0.00 5.28
3927 5053 3.627395 TGAGATTATGCAACTCCCGTT 57.373 42.857 0.00 0.00 0.00 4.44
3928 5054 3.950397 TGAGATTATGCAACTCCCGTTT 58.050 40.909 0.00 0.00 0.00 3.60
3929 5055 5.092554 TGAGATTATGCAACTCCCGTTTA 57.907 39.130 0.00 0.00 0.00 2.01
3930 5056 4.873827 TGAGATTATGCAACTCCCGTTTAC 59.126 41.667 0.00 0.00 0.00 2.01
3931 5057 4.196971 AGATTATGCAACTCCCGTTTACC 58.803 43.478 0.00 0.00 0.00 2.85
3932 5058 2.012937 TATGCAACTCCCGTTTACCG 57.987 50.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 44 9.847224 ATATGGTATTAACTCGGAGAAAAACAT 57.153 29.630 12.86 8.73 34.09 2.71
41 46 9.106070 ACATATGGTATTAACTCGGAGAAAAAC 57.894 33.333 12.86 3.26 34.09 2.43
47 52 8.358148 ACAAGTACATATGGTATTAACTCGGAG 58.642 37.037 7.80 2.83 33.76 4.63
232 404 9.782028 GCGTTATCATTTATGCAATTTATGTTG 57.218 29.630 0.00 0.00 0.00 3.33
294 466 4.518970 TCTGAAGGTCTTTGTATGTTTGGC 59.481 41.667 0.00 0.00 0.00 4.52
417 597 7.816995 GGACTTTGGATGAGATCATAGTGTATC 59.183 40.741 0.00 0.00 36.57 2.24
597 1373 7.439056 CCTGCTATTTTGTGTCAAACTTTGATT 59.561 33.333 7.47 0.00 42.47 2.57
626 1402 9.498176 GTATATCCCTTTGTCACGGTTTATTAT 57.502 33.333 0.00 0.00 0.00 1.28
654 1430 1.421410 GCGGCGTGAACTCCATGTAG 61.421 60.000 9.37 0.00 34.28 2.74
655 1431 1.447140 GCGGCGTGAACTCCATGTA 60.447 57.895 9.37 0.00 34.28 2.29
656 1432 2.742372 GCGGCGTGAACTCCATGT 60.742 61.111 9.37 0.00 34.28 3.21
657 1433 3.853330 CGCGGCGTGAACTCCATG 61.853 66.667 16.70 0.00 34.90 3.66
661 1437 4.007940 TTTGCGCGGCGTGAACTC 62.008 61.111 26.40 6.75 0.00 3.01
662 1438 4.307908 GTTTGCGCGGCGTGAACT 62.308 61.111 26.40 0.00 0.00 3.01
663 1439 3.872409 ATGTTTGCGCGGCGTGAAC 62.872 57.895 26.40 24.89 0.00 3.18
664 1440 3.655031 ATGTTTGCGCGGCGTGAA 61.655 55.556 26.40 12.01 0.00 3.18
665 1441 4.382114 CATGTTTGCGCGGCGTGA 62.382 61.111 26.40 9.97 0.00 4.35
666 1442 2.303208 TATCATGTTTGCGCGGCGTG 62.303 55.000 24.46 17.40 0.00 5.34
667 1443 1.436195 ATATCATGTTTGCGCGGCGT 61.436 50.000 24.46 2.75 0.00 5.68
668 1444 0.510790 TATATCATGTTTGCGCGGCG 59.489 50.000 19.62 19.62 0.00 6.46
669 1445 2.508867 CATATATCATGTTTGCGCGGC 58.491 47.619 8.83 0.00 0.00 6.53
670 1446 2.095819 TGCATATATCATGTTTGCGCGG 60.096 45.455 8.83 0.00 36.11 6.46
671 1447 3.186062 TGCATATATCATGTTTGCGCG 57.814 42.857 0.00 0.00 36.11 6.86
672 1448 3.302434 GCATGCATATATCATGTTTGCGC 59.698 43.478 14.21 0.00 42.34 6.09
673 1449 4.477780 TGCATGCATATATCATGTTTGCG 58.522 39.130 18.46 0.00 42.34 4.85
674 1450 5.466819 ACTGCATGCATATATCATGTTTGC 58.533 37.500 22.97 0.00 42.34 3.68
675 1451 9.634163 ATTAACTGCATGCATATATCATGTTTG 57.366 29.630 22.97 7.02 42.34 2.93
679 1455 9.429600 CGTTATTAACTGCATGCATATATCATG 57.570 33.333 22.97 9.38 43.02 3.07
680 1456 8.615211 CCGTTATTAACTGCATGCATATATCAT 58.385 33.333 22.97 11.08 0.00 2.45
681 1457 7.821846 TCCGTTATTAACTGCATGCATATATCA 59.178 33.333 22.97 3.83 0.00 2.15
682 1458 8.196802 TCCGTTATTAACTGCATGCATATATC 57.803 34.615 22.97 13.36 0.00 1.63
683 1459 8.560355 TTCCGTTATTAACTGCATGCATATAT 57.440 30.769 22.97 14.25 0.00 0.86
684 1460 7.971183 TTCCGTTATTAACTGCATGCATATA 57.029 32.000 22.97 14.29 0.00 0.86
685 1461 6.875948 TTCCGTTATTAACTGCATGCATAT 57.124 33.333 22.97 15.37 0.00 1.78
686 1462 6.685527 TTTCCGTTATTAACTGCATGCATA 57.314 33.333 22.97 9.07 0.00 3.14
687 1463 5.574891 TTTCCGTTATTAACTGCATGCAT 57.425 34.783 22.97 10.26 0.00 3.96
688 1464 5.378292 TTTTCCGTTATTAACTGCATGCA 57.622 34.783 21.29 21.29 0.00 3.96
689 1465 5.219951 CGTTTTTCCGTTATTAACTGCATGC 60.220 40.000 11.82 11.82 0.00 4.06
694 1470 7.354257 TCCTTTCGTTTTTCCGTTATTAACTG 58.646 34.615 5.11 0.00 0.00 3.16
757 1574 1.298713 CGGCTGCTAGTCTGCTACG 60.299 63.158 0.00 7.61 39.31 3.51
805 1803 4.162690 CTACCAGCAGCCCCCGTC 62.163 72.222 0.00 0.00 0.00 4.79
1036 2077 5.506708 AGTAATTAGCTAGGTTGGTTTGGG 58.493 41.667 0.00 0.00 0.00 4.12
1150 2211 1.598701 GGTGTCCAAGCTGCCCATTC 61.599 60.000 0.00 0.00 0.00 2.67
1406 2470 2.764128 ATGCCAGGGACGACGGAT 60.764 61.111 0.00 0.00 0.00 4.18
1457 2521 1.152830 GCTGTTGGTGGAGGGGAAA 59.847 57.895 0.00 0.00 0.00 3.13
1640 2704 4.562425 ACACCACCACCAGTGCCG 62.562 66.667 0.00 0.00 45.83 5.69
1725 2789 4.443266 GCCGACAGAGCCGCTTCT 62.443 66.667 0.00 0.00 0.00 2.85
1877 2941 2.156051 GAAGCTTGGTCGGGTCGAGT 62.156 60.000 2.10 0.00 36.23 4.18
2016 3080 3.321682 ACATGGACCCACACATTGAAAAG 59.678 43.478 0.00 0.00 0.00 2.27
2018 3082 2.890311 GACATGGACCCACACATTGAAA 59.110 45.455 0.00 0.00 0.00 2.69
2228 3292 4.437239 CCGAGTCTGTAGCATCATTCTTT 58.563 43.478 0.00 0.00 0.00 2.52
2414 3478 1.802337 CGACCACCTCGAACCTGTCA 61.802 60.000 0.00 0.00 46.14 3.58
2453 3517 1.197721 GCCTTGATCCTGAAACACACG 59.802 52.381 0.00 0.00 0.00 4.49
2459 3523 2.517959 CCAGTTGCCTTGATCCTGAAA 58.482 47.619 0.00 0.00 0.00 2.69
2480 3544 0.249784 CATCCTCCTCTGTCATGGCG 60.250 60.000 0.00 0.00 0.00 5.69
2489 3553 0.831288 CCTCATCGGCATCCTCCTCT 60.831 60.000 0.00 0.00 0.00 3.69
2537 3601 4.442472 GCAAGATAAGCCTTACCGGTCTTA 60.442 45.833 12.40 13.43 36.50 2.10
2702 3766 1.032014 GGCTTCTGGAACTTTGTGCA 58.968 50.000 0.00 0.00 0.00 4.57
3110 4224 3.596214 ACGTCATGTTTGGTTAGGCTAG 58.404 45.455 0.00 0.00 0.00 3.42
3128 4242 5.479375 TGATCTTACTTTAGGGACTCAACGT 59.521 40.000 0.00 0.00 41.75 3.99
3132 4246 5.663106 AGCATGATCTTACTTTAGGGACTCA 59.337 40.000 0.00 0.00 41.75 3.41
3167 4281 1.026718 CCTCAAATGTCGGGGCTCAC 61.027 60.000 0.00 0.00 0.00 3.51
3174 4288 3.435671 GTGTTTAGGACCTCAAATGTCGG 59.564 47.826 0.00 0.00 33.46 4.79
3284 4402 1.923227 GCGGCTTTGGACTGTAAGGC 61.923 60.000 5.54 5.54 46.31 4.35
3292 4410 1.657751 GGATTCAGGCGGCTTTGGAC 61.658 60.000 9.66 0.00 0.00 4.02
3293 4411 1.378514 GGATTCAGGCGGCTTTGGA 60.379 57.895 9.66 0.00 0.00 3.53
3294 4412 1.379044 AGGATTCAGGCGGCTTTGG 60.379 57.895 9.66 0.00 0.00 3.28
3296 4414 0.393537 CAGAGGATTCAGGCGGCTTT 60.394 55.000 9.66 0.00 0.00 3.51
3302 4428 1.134371 GTACACCCAGAGGATTCAGGC 60.134 57.143 0.00 0.00 36.73 4.85
3322 4448 0.032540 TGTCCATCGCCGATGATCTG 59.967 55.000 27.59 11.35 42.09 2.90
3336 4462 1.141254 TGGTAAGGAAAGCGTTGTCCA 59.859 47.619 11.48 0.00 36.28 4.02
3337 4463 1.534163 GTGGTAAGGAAAGCGTTGTCC 59.466 52.381 0.00 0.00 0.00 4.02
3356 4482 2.755952 AGAACCCTTGAAGCTTTGGT 57.244 45.000 0.00 2.65 0.00 3.67
3368 4494 2.192263 GATCTCTGACCCAAGAACCCT 58.808 52.381 0.00 0.00 0.00 4.34
3374 4500 4.450053 GGATCAAAGATCTCTGACCCAAG 58.550 47.826 4.36 0.00 0.00 3.61
3394 4520 1.686325 GAGCTTCGGCCATAGTGGGA 61.686 60.000 2.24 0.00 43.01 4.37
3399 4525 1.621992 TCTAGGAGCTTCGGCCATAG 58.378 55.000 2.24 0.00 43.01 2.23
3437 4563 1.140852 AGCAGTTCTGGTAGTGTGCAA 59.859 47.619 2.56 0.00 33.24 4.08
3438 4564 0.758734 AGCAGTTCTGGTAGTGTGCA 59.241 50.000 2.56 0.00 33.24 4.57
3458 4584 2.092158 TGACAAGGAATGGTGTGGTGAA 60.092 45.455 0.00 0.00 0.00 3.18
3459 4585 1.492599 TGACAAGGAATGGTGTGGTGA 59.507 47.619 0.00 0.00 0.00 4.02
3461 4587 2.746279 TTGACAAGGAATGGTGTGGT 57.254 45.000 0.00 0.00 0.00 4.16
3463 4589 2.288395 GGCTTTGACAAGGAATGGTGTG 60.288 50.000 0.74 0.00 0.00 3.82
3494 4620 6.829811 CCTCCCGAAAATATTACCAAGGTTAA 59.170 38.462 0.00 0.00 0.00 2.01
3514 4640 0.114364 AACATTGGTTGGTCCCTCCC 59.886 55.000 0.00 0.00 35.46 4.30
3539 4665 1.852067 CTCCGGTTTGCGGGAAACAG 61.852 60.000 23.50 19.72 45.15 3.16
3541 4667 2.622962 CCTCCGGTTTGCGGGAAAC 61.623 63.158 15.71 15.71 42.45 2.78
3549 4675 1.028905 TCAAGTTTGCCTCCGGTTTG 58.971 50.000 0.00 0.00 0.00 2.93
3578 4704 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
3637 4763 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
3638 4764 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
3639 4765 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
3640 4766 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
3641 4767 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
3642 4768 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
3643 4769 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
3644 4770 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
3652 4778 9.616156 ACATGTATTATGTTTCCGGTTAATACA 57.384 29.630 22.83 22.83 44.85 2.29
3653 4779 9.872757 CACATGTATTATGTTTCCGGTTAATAC 57.127 33.333 0.00 12.47 37.73 1.89
3654 4780 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
3655 4781 8.402472 CACACATGTATTATGTTTCCGGTTAAT 58.598 33.333 0.00 1.95 0.00 1.40
3656 4782 7.606839 TCACACATGTATTATGTTTCCGGTTAA 59.393 33.333 0.00 0.00 0.00 2.01
3657 4783 7.104290 TCACACATGTATTATGTTTCCGGTTA 58.896 34.615 0.00 0.00 0.00 2.85
3658 4784 5.941058 TCACACATGTATTATGTTTCCGGTT 59.059 36.000 0.00 0.00 0.00 4.44
3659 4785 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
3660 4786 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
3661 4787 8.608317 TGTATTCACACATGTATTATGTTTCCG 58.392 33.333 0.00 0.00 0.00 4.30
3671 4797 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
3672 4798 9.665719 ATGTTTGTCTATGTATTCACACATGTA 57.334 29.630 0.00 0.00 39.46 2.29
3673 4799 7.977789 TGTTTGTCTATGTATTCACACATGT 57.022 32.000 0.00 0.00 39.46 3.21
3675 4801 9.890629 ACTATGTTTGTCTATGTATTCACACAT 57.109 29.630 0.00 0.00 41.88 3.21
3676 4802 9.150348 CACTATGTTTGTCTATGTATTCACACA 57.850 33.333 0.00 0.00 37.54 3.72
3677 4803 9.151471 ACACTATGTTTGTCTATGTATTCACAC 57.849 33.333 0.00 0.00 37.54 3.82
3678 4804 9.366216 GACACTATGTTTGTCTATGTATTCACA 57.634 33.333 0.00 0.00 40.30 3.58
3679 4805 9.366216 TGACACTATGTTTGTCTATGTATTCAC 57.634 33.333 4.27 0.00 43.30 3.18
3680 4806 9.366216 GTGACACTATGTTTGTCTATGTATTCA 57.634 33.333 0.00 0.00 43.30 2.57
3681 4807 9.587772 AGTGACACTATGTTTGTCTATGTATTC 57.412 33.333 6.24 0.00 43.30 1.75
3684 4810 9.239551 ACTAGTGACACTATGTTTGTCTATGTA 57.760 33.333 15.58 0.00 43.30 2.29
3685 4811 8.123639 ACTAGTGACACTATGTTTGTCTATGT 57.876 34.615 15.58 3.27 43.30 2.29
3688 4814 8.188799 GCATACTAGTGACACTATGTTTGTCTA 58.811 37.037 15.58 1.91 43.30 2.59
3689 4815 7.036220 GCATACTAGTGACACTATGTTTGTCT 58.964 38.462 15.58 0.71 43.30 3.41
3690 4816 6.255887 GGCATACTAGTGACACTATGTTTGTC 59.744 42.308 15.58 16.05 43.22 3.18
3691 4817 6.070767 AGGCATACTAGTGACACTATGTTTGT 60.071 38.462 15.58 11.73 29.08 2.83
3692 4818 6.341316 AGGCATACTAGTGACACTATGTTTG 58.659 40.000 15.58 18.04 29.08 2.93
3693 4819 6.381420 AGAGGCATACTAGTGACACTATGTTT 59.619 38.462 15.58 8.50 29.08 2.83
3694 4820 5.894393 AGAGGCATACTAGTGACACTATGTT 59.106 40.000 15.58 6.32 29.08 2.71
3695 4821 5.450453 AGAGGCATACTAGTGACACTATGT 58.550 41.667 15.58 16.25 29.08 2.29
3696 4822 6.712998 AGTAGAGGCATACTAGTGACACTATG 59.287 42.308 15.58 13.06 33.76 2.23
3697 4823 6.843752 AGTAGAGGCATACTAGTGACACTAT 58.156 40.000 15.58 8.80 33.76 2.12
3698 4824 6.249911 AGTAGAGGCATACTAGTGACACTA 57.750 41.667 14.53 14.53 34.21 2.74
3699 4825 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
3700 4826 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
3701 4827 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
3702 4828 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
3703 4829 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
3704 4830 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
3705 4831 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
3706 4832 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
3707 4833 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
3708 4834 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
3709 4835 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
3710 4836 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
3711 4837 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
3712 4838 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
3713 4839 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
3714 4840 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
3715 4841 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
3716 4842 4.941873 TGATCAACGAGCTAGTCAAGTAGA 59.058 41.667 0.00 0.00 0.00 2.59
3717 4843 5.236655 TGATCAACGAGCTAGTCAAGTAG 57.763 43.478 0.00 0.00 0.00 2.57
3718 4844 5.638596 TTGATCAACGAGCTAGTCAAGTA 57.361 39.130 3.38 0.00 0.00 2.24
3719 4845 4.521130 TTGATCAACGAGCTAGTCAAGT 57.479 40.909 3.38 0.00 0.00 3.16
3720 4846 5.164233 TCTTTGATCAACGAGCTAGTCAAG 58.836 41.667 7.89 0.00 0.00 3.02
3721 4847 5.134202 TCTTTGATCAACGAGCTAGTCAA 57.866 39.130 7.89 0.00 0.00 3.18
3722 4848 4.783764 TCTTTGATCAACGAGCTAGTCA 57.216 40.909 7.89 0.00 0.00 3.41
3723 4849 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
3724 4850 4.081420 ACCATCTTTGATCAACGAGCTAGT 60.081 41.667 18.24 10.56 0.00 2.57
3725 4851 4.437239 ACCATCTTTGATCAACGAGCTAG 58.563 43.478 18.24 8.24 0.00 3.42
3726 4852 4.471904 ACCATCTTTGATCAACGAGCTA 57.528 40.909 18.24 0.00 0.00 3.32
3727 4853 3.340814 ACCATCTTTGATCAACGAGCT 57.659 42.857 18.24 2.03 0.00 4.09
3728 4854 5.065218 ACATAACCATCTTTGATCAACGAGC 59.935 40.000 18.24 0.00 0.00 5.03
3729 4855 6.668541 ACATAACCATCTTTGATCAACGAG 57.331 37.500 18.24 10.23 0.00 4.18
3730 4856 7.361713 GGAAACATAACCATCTTTGATCAACGA 60.362 37.037 16.08 16.08 0.00 3.85
3731 4857 6.747280 GGAAACATAACCATCTTTGATCAACG 59.253 38.462 7.89 6.62 0.00 4.10
3732 4858 7.830739 AGGAAACATAACCATCTTTGATCAAC 58.169 34.615 7.89 0.00 0.00 3.18
3733 4859 9.177608 CTAGGAAACATAACCATCTTTGATCAA 57.822 33.333 3.38 3.38 0.00 2.57
3734 4860 7.283127 GCTAGGAAACATAACCATCTTTGATCA 59.717 37.037 0.00 0.00 0.00 2.92
3735 4861 7.255277 GGCTAGGAAACATAACCATCTTTGATC 60.255 40.741 0.00 0.00 0.00 2.92
3736 4862 6.547510 GGCTAGGAAACATAACCATCTTTGAT 59.452 38.462 0.00 0.00 0.00 2.57
3737 4863 5.885912 GGCTAGGAAACATAACCATCTTTGA 59.114 40.000 0.00 0.00 0.00 2.69
3738 4864 5.652014 TGGCTAGGAAACATAACCATCTTTG 59.348 40.000 0.00 0.00 0.00 2.77
3739 4865 5.826643 TGGCTAGGAAACATAACCATCTTT 58.173 37.500 0.00 0.00 0.00 2.52
3740 4866 5.450818 TGGCTAGGAAACATAACCATCTT 57.549 39.130 0.00 0.00 0.00 2.40
3741 4867 5.653255 ATGGCTAGGAAACATAACCATCT 57.347 39.130 0.00 0.00 30.76 2.90
3742 4868 6.651225 GTCTATGGCTAGGAAACATAACCATC 59.349 42.308 0.00 0.00 37.58 3.51
3743 4869 6.101150 TGTCTATGGCTAGGAAACATAACCAT 59.899 38.462 0.00 0.00 39.62 3.55
3744 4870 5.427157 TGTCTATGGCTAGGAAACATAACCA 59.573 40.000 0.00 0.00 0.00 3.67
3745 4871 5.925509 TGTCTATGGCTAGGAAACATAACC 58.074 41.667 0.00 0.00 0.00 2.85
3746 4872 7.217200 TCATGTCTATGGCTAGGAAACATAAC 58.783 38.462 0.00 0.00 34.97 1.89
3747 4873 7.071196 ACTCATGTCTATGGCTAGGAAACATAA 59.929 37.037 0.00 0.00 34.97 1.90
3748 4874 6.554982 ACTCATGTCTATGGCTAGGAAACATA 59.445 38.462 0.00 0.00 34.97 2.29
3749 4875 5.367937 ACTCATGTCTATGGCTAGGAAACAT 59.632 40.000 0.00 0.00 34.97 2.71
3750 4876 4.716784 ACTCATGTCTATGGCTAGGAAACA 59.283 41.667 0.00 0.00 34.97 2.83
3751 4877 5.283457 ACTCATGTCTATGGCTAGGAAAC 57.717 43.478 0.00 0.00 34.97 2.78
3752 4878 5.189736 ACAACTCATGTCTATGGCTAGGAAA 59.810 40.000 0.00 0.00 37.96 3.13
3753 4879 4.716784 ACAACTCATGTCTATGGCTAGGAA 59.283 41.667 0.00 0.00 37.96 3.36
3754 4880 4.290093 ACAACTCATGTCTATGGCTAGGA 58.710 43.478 0.00 0.00 37.96 2.94
3755 4881 4.679373 ACAACTCATGTCTATGGCTAGG 57.321 45.455 0.00 0.00 37.96 3.02
3756 4882 8.554528 CAAATAACAACTCATGTCTATGGCTAG 58.445 37.037 0.00 0.00 42.99 3.42
3757 4883 8.264347 TCAAATAACAACTCATGTCTATGGCTA 58.736 33.333 0.00 0.00 42.99 3.93
3758 4884 7.112122 TCAAATAACAACTCATGTCTATGGCT 58.888 34.615 0.00 0.00 42.99 4.75
3759 4885 7.320443 TCAAATAACAACTCATGTCTATGGC 57.680 36.000 0.00 0.00 42.99 4.40
3764 4890 8.450964 CCGTTAATCAAATAACAACTCATGTCT 58.549 33.333 0.00 0.00 42.99 3.41
3765 4891 7.696453 CCCGTTAATCAAATAACAACTCATGTC 59.304 37.037 0.00 0.00 42.99 3.06
3766 4892 7.392113 TCCCGTTAATCAAATAACAACTCATGT 59.608 33.333 0.00 0.00 46.82 3.21
3767 4893 7.757526 TCCCGTTAATCAAATAACAACTCATG 58.242 34.615 0.00 0.00 35.89 3.07
3768 4894 7.931578 TCCCGTTAATCAAATAACAACTCAT 57.068 32.000 0.00 0.00 35.89 2.90
3769 4895 7.608376 TGATCCCGTTAATCAAATAACAACTCA 59.392 33.333 0.00 0.00 35.89 3.41
3770 4896 7.908601 GTGATCCCGTTAATCAAATAACAACTC 59.091 37.037 0.00 0.00 35.89 3.01
3771 4897 7.392113 TGTGATCCCGTTAATCAAATAACAACT 59.608 33.333 0.00 0.00 35.89 3.16
3772 4898 7.531716 TGTGATCCCGTTAATCAAATAACAAC 58.468 34.615 0.00 0.00 35.89 3.32
3773 4899 7.689446 TGTGATCCCGTTAATCAAATAACAA 57.311 32.000 0.00 0.00 35.89 2.83
3774 4900 7.554476 TGATGTGATCCCGTTAATCAAATAACA 59.446 33.333 0.00 0.00 32.39 2.41
3775 4901 7.925993 TGATGTGATCCCGTTAATCAAATAAC 58.074 34.615 0.00 0.00 32.39 1.89
3776 4902 8.690203 ATGATGTGATCCCGTTAATCAAATAA 57.310 30.769 0.00 0.00 32.39 1.40
3777 4903 8.690203 AATGATGTGATCCCGTTAATCAAATA 57.310 30.769 0.00 0.00 32.39 1.40
3778 4904 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
3779 4905 7.228507 CCTAATGATGTGATCCCGTTAATCAAA 59.771 37.037 0.00 0.00 35.04 2.69
3780 4906 6.710295 CCTAATGATGTGATCCCGTTAATCAA 59.290 38.462 0.00 0.00 35.04 2.57
3781 4907 6.042666 TCCTAATGATGTGATCCCGTTAATCA 59.957 38.462 0.00 0.00 0.00 2.57
3782 4908 6.464222 TCCTAATGATGTGATCCCGTTAATC 58.536 40.000 0.00 0.00 0.00 1.75
3783 4909 6.270000 TCTCCTAATGATGTGATCCCGTTAAT 59.730 38.462 0.00 0.00 0.00 1.40
3784 4910 5.600898 TCTCCTAATGATGTGATCCCGTTAA 59.399 40.000 0.00 0.00 0.00 2.01
3785 4911 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
3786 4912 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
3787 4913 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
3788 4914 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
3789 4915 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
3797 4923 8.438373 AGTCAATCACATCATTCTCCTAATGAT 58.562 33.333 7.28 7.28 45.40 2.45
3798 4924 7.799081 AGTCAATCACATCATTCTCCTAATGA 58.201 34.615 3.13 3.13 40.50 2.57
3799 4925 8.343366 CAAGTCAATCACATCATTCTCCTAATG 58.657 37.037 0.00 0.00 0.00 1.90
3800 4926 8.270030 TCAAGTCAATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 0.00 1.73
3801 4927 7.550551 GTCAAGTCAATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 0.00 2.69
3802 4928 7.044181 GTCAAGTCAATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 0.00 2.94
3803 4929 5.879223 GTCAAGTCAATCACATCATTCTCCT 59.121 40.000 0.00 0.00 0.00 3.69
3804 4930 5.065731 GGTCAAGTCAATCACATCATTCTCC 59.934 44.000 0.00 0.00 0.00 3.71
3805 4931 5.065731 GGGTCAAGTCAATCACATCATTCTC 59.934 44.000 0.00 0.00 0.00 2.87
3806 4932 4.946157 GGGTCAAGTCAATCACATCATTCT 59.054 41.667 0.00 0.00 0.00 2.40
3807 4933 4.701651 TGGGTCAAGTCAATCACATCATTC 59.298 41.667 0.00 0.00 0.00 2.67
3808 4934 4.665451 TGGGTCAAGTCAATCACATCATT 58.335 39.130 0.00 0.00 0.00 2.57
3809 4935 4.305539 TGGGTCAAGTCAATCACATCAT 57.694 40.909 0.00 0.00 0.00 2.45
3810 4936 3.786368 TGGGTCAAGTCAATCACATCA 57.214 42.857 0.00 0.00 0.00 3.07
3811 4937 4.096984 GGAATGGGTCAAGTCAATCACATC 59.903 45.833 0.00 0.00 0.00 3.06
3812 4938 4.019174 GGAATGGGTCAAGTCAATCACAT 58.981 43.478 0.00 0.00 0.00 3.21
3813 4939 3.420893 GGAATGGGTCAAGTCAATCACA 58.579 45.455 0.00 0.00 0.00 3.58
3814 4940 2.420022 CGGAATGGGTCAAGTCAATCAC 59.580 50.000 0.00 0.00 0.00 3.06
3815 4941 2.039746 ACGGAATGGGTCAAGTCAATCA 59.960 45.455 0.00 0.00 0.00 2.57
3816 4942 2.711542 ACGGAATGGGTCAAGTCAATC 58.288 47.619 0.00 0.00 0.00 2.67
3817 4943 2.879103 ACGGAATGGGTCAAGTCAAT 57.121 45.000 0.00 0.00 0.00 2.57
3818 4944 2.649531 AACGGAATGGGTCAAGTCAA 57.350 45.000 0.00 0.00 0.00 3.18
3819 4945 2.614481 GCTAACGGAATGGGTCAAGTCA 60.614 50.000 0.00 0.00 0.00 3.41
3820 4946 2.007608 GCTAACGGAATGGGTCAAGTC 58.992 52.381 0.00 0.00 0.00 3.01
3821 4947 1.628846 AGCTAACGGAATGGGTCAAGT 59.371 47.619 0.00 0.00 0.00 3.16
3822 4948 2.403252 AGCTAACGGAATGGGTCAAG 57.597 50.000 0.00 0.00 0.00 3.02
3823 4949 2.871096 AAGCTAACGGAATGGGTCAA 57.129 45.000 0.00 0.00 0.00 3.18
3824 4950 2.419574 GCTAAGCTAACGGAATGGGTCA 60.420 50.000 0.00 0.00 0.00 4.02
3825 4951 2.210961 GCTAAGCTAACGGAATGGGTC 58.789 52.381 0.00 0.00 0.00 4.46
3826 4952 1.557832 TGCTAAGCTAACGGAATGGGT 59.442 47.619 0.00 0.00 0.00 4.51
3827 4953 1.940613 GTGCTAAGCTAACGGAATGGG 59.059 52.381 0.00 0.00 0.00 4.00
3828 4954 2.351726 GTGTGCTAAGCTAACGGAATGG 59.648 50.000 0.00 0.00 0.00 3.16
3829 4955 2.029244 CGTGTGCTAAGCTAACGGAATG 59.971 50.000 0.00 0.00 35.60 2.67
3830 4956 2.094390 TCGTGTGCTAAGCTAACGGAAT 60.094 45.455 9.65 0.00 38.12 3.01
3831 4957 1.270274 TCGTGTGCTAAGCTAACGGAA 59.730 47.619 9.65 0.00 38.12 4.30
3832 4958 0.883153 TCGTGTGCTAAGCTAACGGA 59.117 50.000 9.65 0.00 38.12 4.69
3833 4959 1.852895 GATCGTGTGCTAAGCTAACGG 59.147 52.381 9.65 0.00 38.12 4.44
3834 4960 1.513178 CGATCGTGTGCTAAGCTAACG 59.487 52.381 7.03 0.00 38.60 3.18
3835 4961 2.527100 ACGATCGTGTGCTAAGCTAAC 58.473 47.619 22.06 0.00 0.00 2.34
3836 4962 2.933495 ACGATCGTGTGCTAAGCTAA 57.067 45.000 22.06 0.00 0.00 3.09
3837 4963 2.933495 AACGATCGTGTGCTAAGCTA 57.067 45.000 23.51 0.00 0.00 3.32
3838 4964 2.080286 AAACGATCGTGTGCTAAGCT 57.920 45.000 23.51 0.00 0.00 3.74
3839 4965 2.921754 ACTAAACGATCGTGTGCTAAGC 59.078 45.455 23.51 0.00 0.00 3.09
3840 4966 6.691818 AGAATACTAAACGATCGTGTGCTAAG 59.308 38.462 23.51 12.83 0.00 2.18
3841 4967 6.471198 CAGAATACTAAACGATCGTGTGCTAA 59.529 38.462 23.51 6.72 0.00 3.09
3842 4968 5.969435 CAGAATACTAAACGATCGTGTGCTA 59.031 40.000 23.51 10.21 0.00 3.49
3843 4969 4.798907 CAGAATACTAAACGATCGTGTGCT 59.201 41.667 23.51 11.36 0.00 4.40
3844 4970 4.548346 GCAGAATACTAAACGATCGTGTGC 60.548 45.833 23.51 12.69 0.00 4.57
3845 4971 4.798907 AGCAGAATACTAAACGATCGTGTG 59.201 41.667 23.51 16.52 0.00 3.82
3846 4972 4.995124 AGCAGAATACTAAACGATCGTGT 58.005 39.130 23.51 19.85 0.00 4.49
3847 4973 7.494130 CAATAGCAGAATACTAAACGATCGTG 58.506 38.462 23.51 12.16 0.00 4.35
3848 4974 6.144080 GCAATAGCAGAATACTAAACGATCGT 59.856 38.462 16.60 16.60 41.58 3.73
3849 4975 6.363626 AGCAATAGCAGAATACTAAACGATCG 59.636 38.462 14.88 14.88 45.49 3.69
3850 4976 7.644986 AGCAATAGCAGAATACTAAACGATC 57.355 36.000 0.00 0.00 45.49 3.69
3851 4977 8.438676 AAAGCAATAGCAGAATACTAAACGAT 57.561 30.769 0.00 0.00 45.49 3.73
3852 4978 7.764443 AGAAAGCAATAGCAGAATACTAAACGA 59.236 33.333 0.00 0.00 45.49 3.85
3853 4979 7.910304 AGAAAGCAATAGCAGAATACTAAACG 58.090 34.615 0.00 0.00 45.49 3.60
3854 4980 9.709600 GAAGAAAGCAATAGCAGAATACTAAAC 57.290 33.333 0.00 0.00 45.49 2.01
3855 4981 9.448438 TGAAGAAAGCAATAGCAGAATACTAAA 57.552 29.630 0.00 0.00 45.49 1.85
3856 4982 9.618890 ATGAAGAAAGCAATAGCAGAATACTAA 57.381 29.630 0.00 0.00 45.49 2.24
3857 4983 9.049523 CATGAAGAAAGCAATAGCAGAATACTA 57.950 33.333 0.00 0.00 45.49 1.82
3858 4984 7.772292 TCATGAAGAAAGCAATAGCAGAATACT 59.228 33.333 0.00 0.00 45.49 2.12
3859 4985 7.854916 GTCATGAAGAAAGCAATAGCAGAATAC 59.145 37.037 0.00 0.00 45.49 1.89
3860 4986 7.772292 AGTCATGAAGAAAGCAATAGCAGAATA 59.228 33.333 0.00 0.00 45.49 1.75
3861 4987 6.602406 AGTCATGAAGAAAGCAATAGCAGAAT 59.398 34.615 0.00 0.00 45.49 2.40
3862 4988 5.942236 AGTCATGAAGAAAGCAATAGCAGAA 59.058 36.000 0.00 0.00 45.49 3.02
3863 4989 5.494724 AGTCATGAAGAAAGCAATAGCAGA 58.505 37.500 0.00 0.00 45.49 4.26
3864 4990 5.814764 AGTCATGAAGAAAGCAATAGCAG 57.185 39.130 0.00 0.00 45.49 4.24
3865 4991 7.870509 ATAAGTCATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
3866 4992 8.830580 TGTATAAGTCATGAAGAAAGCAATAGC 58.169 33.333 0.00 0.00 42.56 2.97
3869 4995 9.182214 ACATGTATAAGTCATGAAGAAAGCAAT 57.818 29.630 11.92 0.00 43.47 3.56
3870 4996 8.565896 ACATGTATAAGTCATGAAGAAAGCAA 57.434 30.769 11.92 0.00 43.47 3.91
3871 4997 8.565896 AACATGTATAAGTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 43.47 3.91
3872 4998 8.125448 GGAACATGTATAAGTCATGAAGAAAGC 58.875 37.037 0.00 0.00 43.47 3.51
3873 4999 9.388506 AGGAACATGTATAAGTCATGAAGAAAG 57.611 33.333 0.00 0.00 43.47 2.62
3876 5002 9.987272 CATAGGAACATGTATAAGTCATGAAGA 57.013 33.333 0.00 0.00 43.47 2.87
3877 5003 9.987272 TCATAGGAACATGTATAAGTCATGAAG 57.013 33.333 0.00 0.00 43.47 3.02
3878 5004 9.764363 GTCATAGGAACATGTATAAGTCATGAA 57.236 33.333 0.00 0.00 43.47 2.57
3879 5005 9.147732 AGTCATAGGAACATGTATAAGTCATGA 57.852 33.333 0.00 0.00 43.47 3.07
3891 5017 9.096160 GCATAATCTCATAGTCATAGGAACATG 57.904 37.037 0.00 0.00 0.00 3.21
3892 5018 8.819845 TGCATAATCTCATAGTCATAGGAACAT 58.180 33.333 0.00 0.00 0.00 2.71
3893 5019 8.193953 TGCATAATCTCATAGTCATAGGAACA 57.806 34.615 0.00 0.00 0.00 3.18
3894 5020 8.930760 GTTGCATAATCTCATAGTCATAGGAAC 58.069 37.037 0.00 0.00 0.00 3.62
3895 5021 8.874156 AGTTGCATAATCTCATAGTCATAGGAA 58.126 33.333 0.00 0.00 0.00 3.36
3896 5022 8.427902 AGTTGCATAATCTCATAGTCATAGGA 57.572 34.615 0.00 0.00 0.00 2.94
3897 5023 7.763528 GGAGTTGCATAATCTCATAGTCATAGG 59.236 40.741 0.00 0.00 0.00 2.57
3898 5024 7.763528 GGGAGTTGCATAATCTCATAGTCATAG 59.236 40.741 0.00 0.00 0.00 2.23
3899 5025 7.577616 CGGGAGTTGCATAATCTCATAGTCATA 60.578 40.741 0.00 0.00 0.00 2.15
3900 5026 6.471146 GGGAGTTGCATAATCTCATAGTCAT 58.529 40.000 0.00 0.00 0.00 3.06
3901 5027 5.509670 CGGGAGTTGCATAATCTCATAGTCA 60.510 44.000 0.00 0.00 0.00 3.41
3902 5028 4.926238 CGGGAGTTGCATAATCTCATAGTC 59.074 45.833 0.00 0.00 0.00 2.59
3903 5029 4.345257 ACGGGAGTTGCATAATCTCATAGT 59.655 41.667 0.00 0.00 43.33 2.12
3904 5030 4.887748 ACGGGAGTTGCATAATCTCATAG 58.112 43.478 0.00 0.00 43.33 2.23
3905 5031 4.955811 ACGGGAGTTGCATAATCTCATA 57.044 40.909 0.00 0.00 43.33 2.15
3906 5032 3.845781 ACGGGAGTTGCATAATCTCAT 57.154 42.857 0.00 0.00 43.33 2.90
3924 5050 2.159327 AAGTGTTCCTCCGGTAAACG 57.841 50.000 0.00 0.00 43.80 3.60
3925 5051 3.891056 CAAAGTGTTCCTCCGGTAAAC 57.109 47.619 0.00 5.38 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.