Multiple sequence alignment - TraesCS1D01G051900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G051900 chr1D 100.000 4545 0 0 1 4545 32547651 32543107 0.000000e+00 8394
1 TraesCS1D01G051900 chr1A 95.386 2861 110 14 924 3774 31779107 31781955 0.000000e+00 4532
2 TraesCS1D01G051900 chr1A 94.458 415 18 4 1 413 31778690 31779101 6.410000e-178 634
3 TraesCS1D01G051900 chr1B 93.069 3073 149 33 731 3774 50186582 50183545 0.000000e+00 4436
4 TraesCS1D01G051900 chr1B 87.293 543 62 4 4000 4538 658966128 658965589 8.360000e-172 614
5 TraesCS1D01G051900 chr1B 84.426 366 38 10 39 395 50186942 50186587 4.350000e-90 342
6 TraesCS1D01G051900 chr1B 85.437 103 10 3 3824 3921 50183522 50183420 8.040000e-18 102
7 TraesCS1D01G051900 chr7D 90.520 538 45 5 4010 4545 117875835 117876368 0.000000e+00 706
8 TraesCS1D01G051900 chr7D 89.350 554 51 6 3995 4545 532252817 532252269 0.000000e+00 689
9 TraesCS1D01G051900 chr7D 87.985 541 49 8 4010 4545 184986571 184986042 3.860000e-175 625
10 TraesCS1D01G051900 chr5D 89.599 548 50 5 4001 4545 477032797 477033340 0.000000e+00 689
11 TraesCS1D01G051900 chr5D 87.884 553 57 8 3998 4545 520846347 520846894 3.830000e-180 641
12 TraesCS1D01G051900 chr5D 86.631 561 56 13 3995 4545 445835201 445835752 1.810000e-168 603
13 TraesCS1D01G051900 chr6D 87.814 558 54 11 3998 4545 470263487 470264040 3.830000e-180 641
14 TraesCS1D01G051900 chr7B 87.138 552 55 10 4001 4545 113914679 113914137 3.010000e-171 612


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G051900 chr1D 32543107 32547651 4544 True 8394.000000 8394 100.000 1 4545 1 chr1D.!!$R1 4544
1 TraesCS1D01G051900 chr1A 31778690 31781955 3265 False 2583.000000 4532 94.922 1 3774 2 chr1A.!!$F1 3773
2 TraesCS1D01G051900 chr1B 50183420 50186942 3522 True 1626.666667 4436 87.644 39 3921 3 chr1B.!!$R2 3882
3 TraesCS1D01G051900 chr1B 658965589 658966128 539 True 614.000000 614 87.293 4000 4538 1 chr1B.!!$R1 538
4 TraesCS1D01G051900 chr7D 117875835 117876368 533 False 706.000000 706 90.520 4010 4545 1 chr7D.!!$F1 535
5 TraesCS1D01G051900 chr7D 532252269 532252817 548 True 689.000000 689 89.350 3995 4545 1 chr7D.!!$R2 550
6 TraesCS1D01G051900 chr7D 184986042 184986571 529 True 625.000000 625 87.985 4010 4545 1 chr7D.!!$R1 535
7 TraesCS1D01G051900 chr5D 477032797 477033340 543 False 689.000000 689 89.599 4001 4545 1 chr5D.!!$F2 544
8 TraesCS1D01G051900 chr5D 520846347 520846894 547 False 641.000000 641 87.884 3998 4545 1 chr5D.!!$F3 547
9 TraesCS1D01G051900 chr5D 445835201 445835752 551 False 603.000000 603 86.631 3995 4545 1 chr5D.!!$F1 550
10 TraesCS1D01G051900 chr6D 470263487 470264040 553 False 641.000000 641 87.814 3998 4545 1 chr6D.!!$F1 547
11 TraesCS1D01G051900 chr7B 113914137 113914679 542 True 612.000000 612 87.138 4001 4545 1 chr7B.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 598 0.038159 GTTGTCCACGAGGTCTGAGG 60.038 60.0 0.00 0.00 35.89 3.86 F
599 609 0.543749 GGTCTGAGGGCTGCAGTTAT 59.456 55.0 16.64 0.46 34.98 1.89 F
2424 2456 1.135094 ACCTAGATGGCAGGGATGTG 58.865 55.0 0.00 0.00 40.22 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2424 2456 0.883833 CAATAATGCGGCTCCCATCC 59.116 55.0 0.0 0.0 0.0 3.51 R
2793 2826 1.522668 TGCGATGAGGTGAACAAAGG 58.477 50.0 0.0 0.0 0.0 3.11 R
4489 4568 0.250295 TCCAACACCTTCCGAGCTTG 60.250 55.0 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.033626 GGTACTGGGTAGTTAGTGCATAATATC 58.966 40.741 0.00 0.00 38.36 1.63
89 96 6.615316 TGGTCAGATATATCAAAGGGAGTCAA 59.385 38.462 15.08 0.00 0.00 3.18
220 227 8.904099 AAAGTACATAATAGTGGTATTGGAGC 57.096 34.615 0.00 0.00 31.04 4.70
254 261 6.528423 TGTTTTTGTGGTGTGTTTTATTCTCG 59.472 34.615 0.00 0.00 0.00 4.04
396 406 5.113502 ACTTGCAACTTAAAGTCATGAGC 57.886 39.130 0.00 0.00 30.87 4.26
413 423 4.454728 TGAGCTTTGTCTTTTGCAACTT 57.545 36.364 0.00 0.00 0.00 2.66
414 424 4.175516 TGAGCTTTGTCTTTTGCAACTTG 58.824 39.130 0.00 0.00 0.00 3.16
415 425 4.082300 TGAGCTTTGTCTTTTGCAACTTGA 60.082 37.500 0.00 0.00 0.00 3.02
417 427 6.147864 AGCTTTGTCTTTTGCAACTTGATA 57.852 33.333 0.00 0.00 0.00 2.15
418 428 6.752168 AGCTTTGTCTTTTGCAACTTGATAT 58.248 32.000 0.00 0.00 0.00 1.63
419 429 7.212274 AGCTTTGTCTTTTGCAACTTGATATT 58.788 30.769 0.00 0.00 0.00 1.28
420 430 8.359642 AGCTTTGTCTTTTGCAACTTGATATTA 58.640 29.630 0.00 0.00 0.00 0.98
421 431 8.427774 GCTTTGTCTTTTGCAACTTGATATTAC 58.572 33.333 0.00 0.00 0.00 1.89
422 432 8.500837 TTTGTCTTTTGCAACTTGATATTACG 57.499 30.769 0.00 0.00 0.00 3.18
423 433 7.428282 TGTCTTTTGCAACTTGATATTACGA 57.572 32.000 0.00 0.00 0.00 3.43
424 434 7.518161 TGTCTTTTGCAACTTGATATTACGAG 58.482 34.615 0.00 0.00 0.00 4.18
425 435 6.961554 GTCTTTTGCAACTTGATATTACGAGG 59.038 38.462 0.00 0.00 0.00 4.63
426 436 6.653320 TCTTTTGCAACTTGATATTACGAGGT 59.347 34.615 0.00 0.00 0.00 3.85
427 437 6.811253 TTTGCAACTTGATATTACGAGGTT 57.189 33.333 0.00 0.00 0.00 3.50
428 438 6.811253 TTGCAACTTGATATTACGAGGTTT 57.189 33.333 0.00 0.00 0.00 3.27
429 439 7.908827 TTGCAACTTGATATTACGAGGTTTA 57.091 32.000 0.00 0.00 0.00 2.01
430 440 7.908827 TGCAACTTGATATTACGAGGTTTAA 57.091 32.000 0.00 0.00 0.00 1.52
431 441 8.500753 TGCAACTTGATATTACGAGGTTTAAT 57.499 30.769 0.00 0.00 0.00 1.40
432 442 8.394877 TGCAACTTGATATTACGAGGTTTAATG 58.605 33.333 0.00 0.00 0.00 1.90
433 443 8.609176 GCAACTTGATATTACGAGGTTTAATGA 58.391 33.333 0.00 0.00 0.00 2.57
439 449 9.675464 TGATATTACGAGGTTTAATGAAAAGGT 57.325 29.630 0.00 0.00 0.00 3.50
440 450 9.931210 GATATTACGAGGTTTAATGAAAAGGTG 57.069 33.333 0.00 0.00 0.00 4.00
441 451 7.754851 ATTACGAGGTTTAATGAAAAGGTGT 57.245 32.000 0.00 0.00 0.00 4.16
442 452 5.432885 ACGAGGTTTAATGAAAAGGTGTG 57.567 39.130 0.00 0.00 0.00 3.82
443 453 4.885325 ACGAGGTTTAATGAAAAGGTGTGT 59.115 37.500 0.00 0.00 0.00 3.72
444 454 6.056884 ACGAGGTTTAATGAAAAGGTGTGTA 58.943 36.000 0.00 0.00 0.00 2.90
445 455 6.204108 ACGAGGTTTAATGAAAAGGTGTGTAG 59.796 38.462 0.00 0.00 0.00 2.74
446 456 6.425721 CGAGGTTTAATGAAAAGGTGTGTAGA 59.574 38.462 0.00 0.00 0.00 2.59
447 457 7.041644 CGAGGTTTAATGAAAAGGTGTGTAGAA 60.042 37.037 0.00 0.00 0.00 2.10
448 458 7.937649 AGGTTTAATGAAAAGGTGTGTAGAAC 58.062 34.615 0.00 0.00 0.00 3.01
449 459 7.778382 AGGTTTAATGAAAAGGTGTGTAGAACT 59.222 33.333 0.00 0.00 0.00 3.01
450 460 7.860872 GGTTTAATGAAAAGGTGTGTAGAACTG 59.139 37.037 0.00 0.00 0.00 3.16
451 461 5.438761 AATGAAAAGGTGTGTAGAACTGC 57.561 39.130 0.00 0.00 0.00 4.40
452 462 4.150897 TGAAAAGGTGTGTAGAACTGCT 57.849 40.909 0.00 0.00 0.00 4.24
453 463 4.523083 TGAAAAGGTGTGTAGAACTGCTT 58.477 39.130 0.00 0.00 0.00 3.91
454 464 4.335315 TGAAAAGGTGTGTAGAACTGCTTG 59.665 41.667 0.00 0.00 0.00 4.01
455 465 3.560636 AAGGTGTGTAGAACTGCTTGT 57.439 42.857 0.00 0.00 0.00 3.16
456 466 3.113260 AGGTGTGTAGAACTGCTTGTC 57.887 47.619 0.00 0.00 0.00 3.18
457 467 2.143925 GGTGTGTAGAACTGCTTGTCC 58.856 52.381 0.00 0.00 0.00 4.02
458 468 2.143925 GTGTGTAGAACTGCTTGTCCC 58.856 52.381 0.00 0.00 0.00 4.46
459 469 2.047061 TGTGTAGAACTGCTTGTCCCT 58.953 47.619 0.00 0.00 0.00 4.20
460 470 2.224281 TGTGTAGAACTGCTTGTCCCTG 60.224 50.000 0.00 0.00 0.00 4.45
461 471 2.037251 GTGTAGAACTGCTTGTCCCTGA 59.963 50.000 0.00 0.00 0.00 3.86
462 472 2.703536 TGTAGAACTGCTTGTCCCTGAA 59.296 45.455 0.00 0.00 0.00 3.02
463 473 3.135712 TGTAGAACTGCTTGTCCCTGAAA 59.864 43.478 0.00 0.00 0.00 2.69
464 474 3.515602 AGAACTGCTTGTCCCTGAAAT 57.484 42.857 0.00 0.00 0.00 2.17
465 475 3.416156 AGAACTGCTTGTCCCTGAAATC 58.584 45.455 0.00 0.00 0.00 2.17
466 476 2.206576 ACTGCTTGTCCCTGAAATCC 57.793 50.000 0.00 0.00 0.00 3.01
467 477 1.425066 ACTGCTTGTCCCTGAAATCCA 59.575 47.619 0.00 0.00 0.00 3.41
468 478 2.042162 ACTGCTTGTCCCTGAAATCCAT 59.958 45.455 0.00 0.00 0.00 3.41
469 479 2.426024 CTGCTTGTCCCTGAAATCCATG 59.574 50.000 0.00 0.00 0.00 3.66
470 480 1.135721 GCTTGTCCCTGAAATCCATGC 59.864 52.381 0.00 0.00 0.00 4.06
471 481 2.449464 CTTGTCCCTGAAATCCATGCA 58.551 47.619 0.00 0.00 0.00 3.96
472 482 1.838112 TGTCCCTGAAATCCATGCAC 58.162 50.000 0.00 0.00 0.00 4.57
473 483 1.075212 TGTCCCTGAAATCCATGCACA 59.925 47.619 0.00 0.00 0.00 4.57
474 484 2.170166 GTCCCTGAAATCCATGCACAA 58.830 47.619 0.00 0.00 0.00 3.33
475 485 2.762327 GTCCCTGAAATCCATGCACAAT 59.238 45.455 0.00 0.00 0.00 2.71
476 486 2.761767 TCCCTGAAATCCATGCACAATG 59.238 45.455 0.00 0.00 35.89 2.82
486 496 2.689646 CATGCACAATGGTTTCATGCA 58.310 42.857 0.00 0.00 35.33 3.96
487 497 3.266636 CATGCACAATGGTTTCATGCAT 58.733 40.909 4.24 4.24 39.54 3.96
488 498 4.434520 CATGCACAATGGTTTCATGCATA 58.565 39.130 9.48 0.00 37.99 3.14
489 499 4.532314 TGCACAATGGTTTCATGCATAA 57.468 36.364 0.00 0.00 33.18 1.90
490 500 4.244066 TGCACAATGGTTTCATGCATAAC 58.756 39.130 0.00 0.62 33.18 1.89
491 501 4.244066 GCACAATGGTTTCATGCATAACA 58.756 39.130 13.06 1.62 33.18 2.41
492 502 4.327898 GCACAATGGTTTCATGCATAACAG 59.672 41.667 13.06 4.12 33.18 3.16
493 503 5.472148 CACAATGGTTTCATGCATAACAGT 58.528 37.500 13.06 0.00 33.18 3.55
494 504 5.927689 CACAATGGTTTCATGCATAACAGTT 59.072 36.000 13.06 5.51 33.18 3.16
495 505 7.089538 CACAATGGTTTCATGCATAACAGTTA 58.910 34.615 13.06 0.00 33.18 2.24
496 506 7.274033 CACAATGGTTTCATGCATAACAGTTAG 59.726 37.037 13.06 3.29 33.18 2.34
497 507 5.309323 TGGTTTCATGCATAACAGTTAGC 57.691 39.130 13.06 3.91 0.00 3.09
498 508 4.157656 TGGTTTCATGCATAACAGTTAGCC 59.842 41.667 13.06 2.19 0.00 3.93
499 509 4.399303 GGTTTCATGCATAACAGTTAGCCT 59.601 41.667 13.06 0.00 0.00 4.58
500 510 5.449177 GGTTTCATGCATAACAGTTAGCCTC 60.449 44.000 13.06 0.00 0.00 4.70
501 511 3.808728 TCATGCATAACAGTTAGCCTCC 58.191 45.455 0.00 0.00 0.00 4.30
502 512 3.199727 TCATGCATAACAGTTAGCCTCCA 59.800 43.478 0.00 0.00 0.00 3.86
503 513 3.712016 TGCATAACAGTTAGCCTCCAA 57.288 42.857 0.00 0.00 0.00 3.53
504 514 4.027674 TGCATAACAGTTAGCCTCCAAA 57.972 40.909 0.00 0.00 0.00 3.28
505 515 4.599041 TGCATAACAGTTAGCCTCCAAAT 58.401 39.130 0.00 0.00 0.00 2.32
506 516 4.640201 TGCATAACAGTTAGCCTCCAAATC 59.360 41.667 0.00 0.00 0.00 2.17
507 517 4.640201 GCATAACAGTTAGCCTCCAAATCA 59.360 41.667 0.00 0.00 0.00 2.57
508 518 5.125417 GCATAACAGTTAGCCTCCAAATCAA 59.875 40.000 0.00 0.00 0.00 2.57
509 519 6.183360 GCATAACAGTTAGCCTCCAAATCAAT 60.183 38.462 0.00 0.00 0.00 2.57
510 520 7.631377 GCATAACAGTTAGCCTCCAAATCAATT 60.631 37.037 0.00 0.00 0.00 2.32
511 521 8.902806 CATAACAGTTAGCCTCCAAATCAATTA 58.097 33.333 0.00 0.00 0.00 1.40
512 522 7.961326 AACAGTTAGCCTCCAAATCAATTAT 57.039 32.000 0.00 0.00 0.00 1.28
513 523 7.961326 ACAGTTAGCCTCCAAATCAATTATT 57.039 32.000 0.00 0.00 0.00 1.40
514 524 8.366359 ACAGTTAGCCTCCAAATCAATTATTT 57.634 30.769 0.00 0.00 38.36 1.40
515 525 8.470002 ACAGTTAGCCTCCAAATCAATTATTTC 58.530 33.333 0.00 0.00 35.54 2.17
516 526 8.469200 CAGTTAGCCTCCAAATCAATTATTTCA 58.531 33.333 0.00 0.00 35.54 2.69
517 527 9.205513 AGTTAGCCTCCAAATCAATTATTTCAT 57.794 29.630 0.00 0.00 35.54 2.57
518 528 9.822185 GTTAGCCTCCAAATCAATTATTTCATT 57.178 29.630 0.00 0.00 35.54 2.57
520 530 8.726870 AGCCTCCAAATCAATTATTTCATTTG 57.273 30.769 10.15 10.15 35.54 2.32
521 531 7.281549 AGCCTCCAAATCAATTATTTCATTTGC 59.718 33.333 11.09 3.88 35.54 3.68
522 532 7.066043 GCCTCCAAATCAATTATTTCATTTGCA 59.934 33.333 11.09 0.00 35.54 4.08
523 533 8.392612 CCTCCAAATCAATTATTTCATTTGCAC 58.607 33.333 11.09 0.00 35.54 4.57
524 534 7.961855 TCCAAATCAATTATTTCATTTGCACG 58.038 30.769 11.09 0.00 35.54 5.34
525 535 7.816513 TCCAAATCAATTATTTCATTTGCACGA 59.183 29.630 11.09 4.39 35.54 4.35
526 536 8.111836 CCAAATCAATTATTTCATTTGCACGAG 58.888 33.333 11.09 0.00 35.54 4.18
527 537 8.649841 CAAATCAATTATTTCATTTGCACGAGT 58.350 29.630 0.00 0.00 35.54 4.18
528 538 9.853555 AAATCAATTATTTCATTTGCACGAGTA 57.146 25.926 0.00 0.00 32.00 2.59
531 541 9.853555 TCAATTATTTCATTTGCACGAGTATTT 57.146 25.926 0.00 0.00 0.00 1.40
559 569 9.614792 AAAATTTAACAATCCTAGACTATCGCT 57.385 29.630 0.00 0.00 0.00 4.93
561 571 9.915629 AATTTAACAATCCTAGACTATCGCTAG 57.084 33.333 0.00 0.00 36.06 3.42
562 572 5.379732 AACAATCCTAGACTATCGCTAGC 57.620 43.478 4.06 4.06 35.19 3.42
563 573 3.759618 ACAATCCTAGACTATCGCTAGCC 59.240 47.826 9.66 0.00 35.19 3.93
564 574 4.013728 CAATCCTAGACTATCGCTAGCCT 58.986 47.826 9.66 1.37 35.19 4.58
565 575 5.186942 CAATCCTAGACTATCGCTAGCCTA 58.813 45.833 9.66 2.59 35.19 3.93
566 576 5.640158 ATCCTAGACTATCGCTAGCCTAT 57.360 43.478 9.66 5.79 35.19 2.57
567 577 5.438698 TCCTAGACTATCGCTAGCCTATT 57.561 43.478 9.66 0.00 35.19 1.73
568 578 6.556974 TCCTAGACTATCGCTAGCCTATTA 57.443 41.667 9.66 0.00 35.19 0.98
569 579 6.584488 TCCTAGACTATCGCTAGCCTATTAG 58.416 44.000 9.66 7.62 35.19 1.73
570 580 6.156602 TCCTAGACTATCGCTAGCCTATTAGT 59.843 42.308 9.66 10.67 35.19 2.24
571 581 6.824704 CCTAGACTATCGCTAGCCTATTAGTT 59.175 42.308 9.66 5.46 35.19 2.24
572 582 6.503589 AGACTATCGCTAGCCTATTAGTTG 57.496 41.667 9.66 0.00 0.00 3.16
573 583 6.005198 AGACTATCGCTAGCCTATTAGTTGT 58.995 40.000 9.66 1.27 0.00 3.32
574 584 6.149807 AGACTATCGCTAGCCTATTAGTTGTC 59.850 42.308 9.66 5.74 0.00 3.18
575 585 4.522722 ATCGCTAGCCTATTAGTTGTCC 57.477 45.455 9.66 0.00 0.00 4.02
576 586 3.293337 TCGCTAGCCTATTAGTTGTCCA 58.707 45.455 9.66 0.00 0.00 4.02
577 587 3.067742 TCGCTAGCCTATTAGTTGTCCAC 59.932 47.826 9.66 0.00 0.00 4.02
578 588 3.381949 GCTAGCCTATTAGTTGTCCACG 58.618 50.000 2.29 0.00 0.00 4.94
579 589 3.067742 GCTAGCCTATTAGTTGTCCACGA 59.932 47.826 2.29 0.00 0.00 4.35
580 590 3.802948 AGCCTATTAGTTGTCCACGAG 57.197 47.619 0.00 0.00 0.00 4.18
581 591 2.431057 AGCCTATTAGTTGTCCACGAGG 59.569 50.000 0.00 0.00 0.00 4.63
582 592 2.167900 GCCTATTAGTTGTCCACGAGGT 59.832 50.000 0.00 0.00 35.89 3.85
583 593 3.737355 GCCTATTAGTTGTCCACGAGGTC 60.737 52.174 0.00 0.00 35.89 3.85
584 594 3.700038 CCTATTAGTTGTCCACGAGGTCT 59.300 47.826 0.00 0.00 35.89 3.85
585 595 3.594603 ATTAGTTGTCCACGAGGTCTG 57.405 47.619 0.00 0.00 35.89 3.51
586 596 2.281539 TAGTTGTCCACGAGGTCTGA 57.718 50.000 0.00 0.00 35.89 3.27
587 597 0.962489 AGTTGTCCACGAGGTCTGAG 59.038 55.000 0.00 0.00 35.89 3.35
588 598 0.038159 GTTGTCCACGAGGTCTGAGG 60.038 60.000 0.00 0.00 35.89 3.86
589 599 1.185618 TTGTCCACGAGGTCTGAGGG 61.186 60.000 0.00 0.00 35.89 4.30
590 600 2.680352 TCCACGAGGTCTGAGGGC 60.680 66.667 0.00 0.00 35.89 5.19
591 601 2.681778 CCACGAGGTCTGAGGGCT 60.682 66.667 0.00 0.00 0.00 5.19
592 602 2.575993 CACGAGGTCTGAGGGCTG 59.424 66.667 0.00 0.00 0.00 4.85
593 603 3.386237 ACGAGGTCTGAGGGCTGC 61.386 66.667 0.00 0.00 0.00 5.25
594 604 3.385384 CGAGGTCTGAGGGCTGCA 61.385 66.667 0.50 0.00 0.00 4.41
595 605 2.583520 GAGGTCTGAGGGCTGCAG 59.416 66.667 10.11 10.11 34.71 4.41
596 606 2.203907 AGGTCTGAGGGCTGCAGT 60.204 61.111 16.64 0.00 34.98 4.40
597 607 1.835927 GAGGTCTGAGGGCTGCAGTT 61.836 60.000 16.64 0.97 34.98 3.16
598 608 0.545309 AGGTCTGAGGGCTGCAGTTA 60.545 55.000 16.64 0.00 34.98 2.24
599 609 0.543749 GGTCTGAGGGCTGCAGTTAT 59.456 55.000 16.64 0.46 34.98 1.89
600 610 1.762957 GGTCTGAGGGCTGCAGTTATA 59.237 52.381 16.64 0.00 34.98 0.98
601 611 2.370189 GGTCTGAGGGCTGCAGTTATAT 59.630 50.000 16.64 0.00 34.98 0.86
602 612 3.578716 GGTCTGAGGGCTGCAGTTATATA 59.421 47.826 16.64 0.00 34.98 0.86
603 613 4.223923 GGTCTGAGGGCTGCAGTTATATAT 59.776 45.833 16.64 0.00 34.98 0.86
604 614 5.280215 GGTCTGAGGGCTGCAGTTATATATT 60.280 44.000 16.64 0.00 34.98 1.28
605 615 6.234177 GTCTGAGGGCTGCAGTTATATATTT 58.766 40.000 16.64 0.00 34.98 1.40
606 616 6.712547 GTCTGAGGGCTGCAGTTATATATTTT 59.287 38.462 16.64 0.00 34.98 1.82
607 617 6.936900 TCTGAGGGCTGCAGTTATATATTTTC 59.063 38.462 16.64 0.00 34.98 2.29
608 618 6.600388 TGAGGGCTGCAGTTATATATTTTCA 58.400 36.000 16.64 2.87 0.00 2.69
609 619 6.486657 TGAGGGCTGCAGTTATATATTTTCAC 59.513 38.462 16.64 0.00 0.00 3.18
610 620 6.364701 AGGGCTGCAGTTATATATTTTCACA 58.635 36.000 16.64 0.00 0.00 3.58
611 621 6.263168 AGGGCTGCAGTTATATATTTTCACAC 59.737 38.462 16.64 0.00 0.00 3.82
612 622 6.263168 GGGCTGCAGTTATATATTTTCACACT 59.737 38.462 16.64 0.00 0.00 3.55
613 623 7.134815 GGCTGCAGTTATATATTTTCACACTG 58.865 38.462 16.64 4.72 34.52 3.66
614 624 7.201732 GGCTGCAGTTATATATTTTCACACTGT 60.202 37.037 16.64 0.00 34.02 3.55
615 625 8.826710 GCTGCAGTTATATATTTTCACACTGTA 58.173 33.333 16.64 5.26 34.02 2.74
617 627 9.325198 TGCAGTTATATATTTTCACACTGTAGG 57.675 33.333 9.22 0.00 34.02 3.18
618 628 8.774586 GCAGTTATATATTTTCACACTGTAGGG 58.225 37.037 9.22 0.00 34.02 3.53
624 634 4.764050 TTTTCACACTGTAGGGACTTCA 57.236 40.909 0.00 0.00 41.75 3.02
625 635 4.764050 TTTCACACTGTAGGGACTTCAA 57.236 40.909 0.00 0.00 41.75 2.69
626 636 4.336889 TTCACACTGTAGGGACTTCAAG 57.663 45.455 0.00 0.00 41.75 3.02
627 637 2.037251 TCACACTGTAGGGACTTCAAGC 59.963 50.000 0.00 0.00 41.75 4.01
628 638 2.037772 CACACTGTAGGGACTTCAAGCT 59.962 50.000 0.00 0.00 41.75 3.74
629 639 2.706190 ACACTGTAGGGACTTCAAGCTT 59.294 45.455 0.00 0.00 41.75 3.74
630 640 3.136626 ACACTGTAGGGACTTCAAGCTTT 59.863 43.478 0.00 0.00 41.75 3.51
631 641 4.347000 ACACTGTAGGGACTTCAAGCTTTA 59.653 41.667 0.00 0.00 41.75 1.85
632 642 4.932200 CACTGTAGGGACTTCAAGCTTTAG 59.068 45.833 0.00 0.00 41.75 1.85
633 643 4.593634 ACTGTAGGGACTTCAAGCTTTAGT 59.406 41.667 10.07 10.07 41.75 2.24
634 644 5.071923 ACTGTAGGGACTTCAAGCTTTAGTT 59.928 40.000 11.27 1.00 41.75 2.24
635 645 5.305585 TGTAGGGACTTCAAGCTTTAGTTG 58.694 41.667 11.27 0.00 41.75 3.16
636 646 4.706842 AGGGACTTCAAGCTTTAGTTGA 57.293 40.909 11.27 0.00 27.25 3.18
637 647 5.048846 AGGGACTTCAAGCTTTAGTTGAA 57.951 39.130 11.27 5.25 40.73 2.69
673 683 9.416794 AGATGCTATCTGTCTTATTCAATAACG 57.583 33.333 0.00 0.00 38.44 3.18
674 684 7.946655 TGCTATCTGTCTTATTCAATAACGG 57.053 36.000 0.00 0.00 0.00 4.44
675 685 7.722363 TGCTATCTGTCTTATTCAATAACGGA 58.278 34.615 0.00 0.00 0.00 4.69
676 686 8.367911 TGCTATCTGTCTTATTCAATAACGGAT 58.632 33.333 8.15 8.15 0.00 4.18
677 687 8.651588 GCTATCTGTCTTATTCAATAACGGATG 58.348 37.037 11.58 5.58 0.00 3.51
678 688 9.698309 CTATCTGTCTTATTCAATAACGGATGT 57.302 33.333 11.58 0.00 0.00 3.06
679 689 8.964476 ATCTGTCTTATTCAATAACGGATGTT 57.036 30.769 3.60 0.00 42.19 2.71
680 690 8.196802 TCTGTCTTATTCAATAACGGATGTTG 57.803 34.615 0.00 0.00 39.12 3.33
681 691 7.822334 TCTGTCTTATTCAATAACGGATGTTGT 59.178 33.333 0.00 0.00 39.12 3.32
682 692 8.330466 TGTCTTATTCAATAACGGATGTTGTT 57.670 30.769 0.00 0.00 39.64 2.83
683 693 8.447833 TGTCTTATTCAATAACGGATGTTGTTC 58.552 33.333 0.00 0.00 37.32 3.18
684 694 8.665685 GTCTTATTCAATAACGGATGTTGTTCT 58.334 33.333 0.00 0.00 37.32 3.01
685 695 9.226606 TCTTATTCAATAACGGATGTTGTTCTT 57.773 29.630 0.00 0.00 37.32 2.52
686 696 9.840427 CTTATTCAATAACGGATGTTGTTCTTT 57.160 29.630 0.00 0.00 37.32 2.52
721 731 5.470047 AGAATTGTCTACAAGGAACGAGT 57.530 39.130 1.62 0.00 39.47 4.18
722 732 6.585695 AGAATTGTCTACAAGGAACGAGTA 57.414 37.500 1.62 0.00 39.47 2.59
723 733 6.989659 AGAATTGTCTACAAGGAACGAGTAA 58.010 36.000 1.62 0.00 39.47 2.24
724 734 7.439381 AGAATTGTCTACAAGGAACGAGTAAA 58.561 34.615 1.62 0.00 39.47 2.01
725 735 7.929785 AGAATTGTCTACAAGGAACGAGTAAAA 59.070 33.333 1.62 0.00 39.47 1.52
726 736 8.617290 AATTGTCTACAAGGAACGAGTAAAAT 57.383 30.769 1.62 0.00 39.47 1.82
727 737 8.617290 ATTGTCTACAAGGAACGAGTAAAATT 57.383 30.769 1.62 0.00 39.47 1.82
728 738 8.441312 TTGTCTACAAGGAACGAGTAAAATTT 57.559 30.769 0.00 0.00 0.00 1.82
729 739 9.545105 TTGTCTACAAGGAACGAGTAAAATTTA 57.455 29.630 0.00 0.00 0.00 1.40
730 740 9.715121 TGTCTACAAGGAACGAGTAAAATTTAT 57.285 29.630 0.00 0.00 0.00 1.40
787 797 5.345202 GTCTGGTATATTCGGTTTGCTATCG 59.655 44.000 0.00 0.00 0.00 2.92
789 799 5.466819 TGGTATATTCGGTTTGCTATCGAG 58.533 41.667 0.00 0.00 34.33 4.04
819 829 8.311395 TCTAATGTCATCTTACCATGTCTCTT 57.689 34.615 0.00 0.00 0.00 2.85
820 830 8.417106 TCTAATGTCATCTTACCATGTCTCTTC 58.583 37.037 0.00 0.00 0.00 2.87
821 831 6.805016 ATGTCATCTTACCATGTCTCTTCT 57.195 37.500 0.00 0.00 0.00 2.85
839 849 7.925483 GTCTCTTCTATGCTGAATCACAATACT 59.075 37.037 0.00 0.00 0.00 2.12
863 873 3.070878 TCCACAGTGAGTACATTCAAGCA 59.929 43.478 0.62 0.00 0.00 3.91
865 875 3.809279 CACAGTGAGTACATTCAAGCACA 59.191 43.478 0.00 0.00 0.00 4.57
866 876 4.060900 ACAGTGAGTACATTCAAGCACAG 58.939 43.478 0.00 0.00 0.00 3.66
867 877 3.070018 AGTGAGTACATTCAAGCACAGC 58.930 45.455 0.00 0.00 0.00 4.40
868 878 2.807967 GTGAGTACATTCAAGCACAGCA 59.192 45.455 0.00 0.00 0.00 4.41
869 879 3.438087 GTGAGTACATTCAAGCACAGCAT 59.562 43.478 0.00 0.00 0.00 3.79
870 880 3.686241 TGAGTACATTCAAGCACAGCATC 59.314 43.478 0.00 0.00 0.00 3.91
874 901 6.118170 AGTACATTCAAGCACAGCATCTATT 58.882 36.000 0.00 0.00 0.00 1.73
951 979 3.763897 AGTAGCCTTTGCCAGGTTATTTG 59.236 43.478 1.18 0.00 46.07 2.32
956 984 5.003160 GCCTTTGCCAGGTTATTTGATTTT 58.997 37.500 1.18 0.00 46.07 1.82
995 1023 2.107950 ATTCGTTCATTGCGGAAGGA 57.892 45.000 0.00 0.00 39.22 3.36
1038 1066 2.961526 TTCAGGAGATGCCTCGTTAC 57.038 50.000 0.00 0.00 46.97 2.50
1182 1210 2.866156 GTTTGGCAAAAGCTTTCTGGTC 59.134 45.455 15.29 7.59 0.00 4.02
1243 1272 4.400884 TGTGAAGGCAAAAGCTTTCAACTA 59.599 37.500 13.10 4.45 37.49 2.24
1374 1404 5.067283 AGTTCTTTTGACAGTTTATTGCGGT 59.933 36.000 0.00 0.00 0.00 5.68
1430 1461 3.399305 CCCCTCCCCAGCTTATTCTAAAT 59.601 47.826 0.00 0.00 0.00 1.40
1498 1529 3.275617 AGTTTTGAAGCCCCCAAAAAC 57.724 42.857 9.20 0.00 42.77 2.43
1610 1641 6.827586 TCGGTCAAATAATTTAGGCTGTTT 57.172 33.333 0.00 0.00 0.00 2.83
1656 1687 4.065321 AGGTGCATGTCTTCTGCTATAC 57.935 45.455 0.00 0.00 40.34 1.47
1657 1688 3.708631 AGGTGCATGTCTTCTGCTATACT 59.291 43.478 0.00 0.00 40.34 2.12
1842 1874 5.520376 AACTTGAATGGTCTTGTTTGAGG 57.480 39.130 0.00 0.00 0.00 3.86
1849 1881 4.729227 TGGTCTTGTTTGAGGGTTTTTC 57.271 40.909 0.00 0.00 0.00 2.29
1878 1910 2.093447 AGCAGCTGTTGGGTACACTATC 60.093 50.000 16.64 0.00 32.10 2.08
2161 2193 5.356190 AGATGGTGATGCATTTGAGTACTTG 59.644 40.000 0.00 0.00 0.00 3.16
2248 2280 5.118510 CGCGACTATGCATTCATTGTATGTA 59.881 40.000 3.54 1.42 38.45 2.29
2319 2351 5.924475 ACTTGAGACCTATTTTGTTCACG 57.076 39.130 0.00 0.00 0.00 4.35
2424 2456 1.135094 ACCTAGATGGCAGGGATGTG 58.865 55.000 0.00 0.00 40.22 3.21
2493 2525 2.281484 GGCTGTCCACTTTGCGGA 60.281 61.111 0.00 0.00 0.00 5.54
2544 2577 8.874816 GTCCTTTATGAAGCTACTAGAAACTTG 58.125 37.037 0.00 0.00 0.00 3.16
2789 2822 4.500545 CCGAGGAGTCTCAGGTATTGATTG 60.501 50.000 1.47 0.00 39.95 2.67
2793 2826 7.296628 AGGAGTCTCAGGTATTGATTGATAC 57.703 40.000 1.47 0.00 34.68 2.24
2837 2871 4.634199 ACTCCAAATGGCTTGAAATGTTG 58.366 39.130 0.00 0.00 37.17 3.33
2989 3023 2.361438 AGCCGTAGTTACAGGTATGCTC 59.639 50.000 0.00 0.00 0.00 4.26
3097 3131 5.257262 CGATCTAGGTCCAGATCCTATTCA 58.743 45.833 18.23 0.00 45.49 2.57
3115 3149 1.002274 AGAATCTCCCAGAGGGCGT 59.998 57.895 0.00 0.00 43.94 5.68
3199 3233 1.760029 CTCTCCCCAGAAGCTAAGGAC 59.240 57.143 0.00 0.00 0.00 3.85
3214 3248 2.507944 GACATGGATCGCAGCCCT 59.492 61.111 0.00 0.00 0.00 5.19
3277 3311 4.576463 CCTGTAGCAAAGGATAATGGTGAC 59.424 45.833 0.00 0.00 36.91 3.67
3487 3521 1.610379 AAGTCCAAGGGGCAATGGC 60.610 57.895 0.00 0.00 36.62 4.40
3514 3548 3.681835 GGACGTCGTGGCTCAGGT 61.682 66.667 9.92 0.00 0.00 4.00
3520 3554 2.137528 TCGTGGCTCAGGTTCACCA 61.138 57.895 0.00 0.00 38.89 4.17
3591 3625 2.078849 TCGCTACATGTGGTTGTGAG 57.921 50.000 9.11 0.00 36.95 3.51
3646 3680 6.434340 GTGAATTTCCTACCTGTTTCCTGAAT 59.566 38.462 0.00 0.00 0.00 2.57
3652 3686 4.697352 CCTACCTGTTTCCTGAATCTGTTG 59.303 45.833 0.00 0.00 0.00 3.33
3695 3733 5.390567 CGAAGGTTTGTTACTCTGGTTATGC 60.391 44.000 0.00 0.00 0.00 3.14
3717 3755 5.149273 GCTGTGCGTAATGGATTGATAATG 58.851 41.667 0.00 0.00 0.00 1.90
3723 3761 7.482743 GTGCGTAATGGATTGATAATGCTATTG 59.517 37.037 0.00 0.00 0.00 1.90
3788 3839 3.392769 TGTGGTCTTCGAAACGTTTTG 57.607 42.857 20.29 20.29 0.00 2.44
3789 3840 2.743126 TGTGGTCTTCGAAACGTTTTGT 59.257 40.909 24.11 0.00 0.00 2.83
3790 3841 3.095738 GTGGTCTTCGAAACGTTTTGTG 58.904 45.455 24.11 18.37 0.00 3.33
3791 3842 2.096174 TGGTCTTCGAAACGTTTTGTGG 59.904 45.455 24.11 18.01 0.00 4.17
3792 3843 2.352342 GGTCTTCGAAACGTTTTGTGGA 59.648 45.455 24.11 19.58 0.00 4.02
3793 3844 3.545426 GGTCTTCGAAACGTTTTGTGGAG 60.545 47.826 24.11 19.52 0.00 3.86
3794 3845 3.063045 GTCTTCGAAACGTTTTGTGGAGT 59.937 43.478 24.11 0.00 0.00 3.85
3795 3846 4.268405 GTCTTCGAAACGTTTTGTGGAGTA 59.732 41.667 24.11 4.80 0.00 2.59
3796 3847 4.505191 TCTTCGAAACGTTTTGTGGAGTAG 59.495 41.667 24.11 13.99 0.00 2.57
3797 3848 4.044336 TCGAAACGTTTTGTGGAGTAGA 57.956 40.909 24.11 3.45 0.00 2.59
3798 3849 4.431809 TCGAAACGTTTTGTGGAGTAGAA 58.568 39.130 24.11 2.79 0.00 2.10
3799 3850 4.869297 TCGAAACGTTTTGTGGAGTAGAAA 59.131 37.500 24.11 2.11 0.00 2.52
3800 3851 5.350914 TCGAAACGTTTTGTGGAGTAGAAAA 59.649 36.000 24.11 1.64 0.00 2.29
3801 3852 5.675444 CGAAACGTTTTGTGGAGTAGAAAAG 59.325 40.000 15.89 0.00 32.85 2.27
3802 3853 6.455913 CGAAACGTTTTGTGGAGTAGAAAAGA 60.456 38.462 15.89 0.00 32.85 2.52
3803 3854 5.986004 ACGTTTTGTGGAGTAGAAAAGAG 57.014 39.130 0.00 0.00 32.85 2.85
3804 3855 4.272748 ACGTTTTGTGGAGTAGAAAAGAGC 59.727 41.667 0.00 0.00 32.85 4.09
3805 3856 4.608445 CGTTTTGTGGAGTAGAAAAGAGCG 60.608 45.833 0.00 0.00 32.85 5.03
3806 3857 4.330944 TTTGTGGAGTAGAAAAGAGCGA 57.669 40.909 0.00 0.00 0.00 4.93
3807 3858 4.537135 TTGTGGAGTAGAAAAGAGCGAT 57.463 40.909 0.00 0.00 0.00 4.58
3808 3859 3.849911 TGTGGAGTAGAAAAGAGCGATG 58.150 45.455 0.00 0.00 0.00 3.84
3809 3860 3.509967 TGTGGAGTAGAAAAGAGCGATGA 59.490 43.478 0.00 0.00 0.00 2.92
3810 3861 3.860536 GTGGAGTAGAAAAGAGCGATGAC 59.139 47.826 0.00 0.00 0.00 3.06
3811 3862 3.119101 TGGAGTAGAAAAGAGCGATGACC 60.119 47.826 0.00 0.00 0.00 4.02
3812 3863 3.119101 GGAGTAGAAAAGAGCGATGACCA 60.119 47.826 0.00 0.00 0.00 4.02
3813 3864 4.495422 GAGTAGAAAAGAGCGATGACCAA 58.505 43.478 0.00 0.00 0.00 3.67
3814 3865 4.499183 AGTAGAAAAGAGCGATGACCAAG 58.501 43.478 0.00 0.00 0.00 3.61
3815 3866 2.079925 AGAAAAGAGCGATGACCAAGC 58.920 47.619 0.00 0.00 0.00 4.01
3816 3867 0.798776 AAAAGAGCGATGACCAAGCG 59.201 50.000 0.00 0.00 35.78 4.68
3817 3868 0.320771 AAAGAGCGATGACCAAGCGT 60.321 50.000 0.00 0.00 35.78 5.07
3818 3869 0.737715 AAGAGCGATGACCAAGCGTC 60.738 55.000 0.00 0.00 42.33 5.19
3819 3870 1.153745 GAGCGATGACCAAGCGTCT 60.154 57.895 0.00 0.00 42.49 4.18
3820 3871 0.737715 GAGCGATGACCAAGCGTCTT 60.738 55.000 0.00 0.00 42.49 3.01
3821 3872 0.530744 AGCGATGACCAAGCGTCTTA 59.469 50.000 0.00 0.00 42.49 2.10
3822 3873 1.067142 AGCGATGACCAAGCGTCTTAA 60.067 47.619 0.00 0.00 42.49 1.85
3823 3874 1.933853 GCGATGACCAAGCGTCTTAAT 59.066 47.619 0.00 0.00 42.49 1.40
3824 3875 2.033662 GCGATGACCAAGCGTCTTAATC 60.034 50.000 0.00 0.00 42.49 1.75
3825 3876 3.186909 CGATGACCAAGCGTCTTAATCA 58.813 45.455 7.12 7.12 42.49 2.57
3826 3877 3.000322 CGATGACCAAGCGTCTTAATCAC 60.000 47.826 6.93 0.00 42.49 3.06
3840 3891 2.479566 AATCACGCACTGGACTGAAT 57.520 45.000 0.00 0.00 0.00 2.57
3847 3898 5.753438 TCACGCACTGGACTGAATATATTTC 59.247 40.000 0.00 0.00 0.00 2.17
3851 3902 7.073883 CGCACTGGACTGAATATATTTCATTG 58.926 38.462 0.00 1.22 0.00 2.82
3868 3919 5.866335 TCATTGCAAAAGCAAAATCATCC 57.134 34.783 1.71 0.00 33.20 3.51
3874 3925 5.221402 TGCAAAAGCAAAATCATCCACACTA 60.221 36.000 0.00 0.00 0.00 2.74
3877 3928 7.318141 CAAAAGCAAAATCATCCACACTATCT 58.682 34.615 0.00 0.00 0.00 1.98
3878 3929 7.472334 AAAGCAAAATCATCCACACTATCTT 57.528 32.000 0.00 0.00 0.00 2.40
3879 3930 8.579850 AAAGCAAAATCATCCACACTATCTTA 57.420 30.769 0.00 0.00 0.00 2.10
3880 3931 7.798596 AGCAAAATCATCCACACTATCTTAG 57.201 36.000 0.00 0.00 0.00 2.18
3881 3932 7.568349 AGCAAAATCATCCACACTATCTTAGA 58.432 34.615 0.00 0.00 0.00 2.10
3882 3933 8.049117 AGCAAAATCATCCACACTATCTTAGAA 58.951 33.333 0.00 0.00 0.00 2.10
3883 3934 8.844244 GCAAAATCATCCACACTATCTTAGAAT 58.156 33.333 0.00 0.00 0.00 2.40
3885 3936 7.976135 AATCATCCACACTATCTTAGAATGC 57.024 36.000 0.00 0.00 0.00 3.56
3889 3945 8.650490 TCATCCACACTATCTTAGAATGCATTA 58.350 33.333 12.97 0.00 0.00 1.90
3921 3977 3.759618 TGCTTCATGTCATCTCAAATGCA 59.240 39.130 0.00 0.00 0.00 3.96
3922 3978 4.218852 TGCTTCATGTCATCTCAAATGCAA 59.781 37.500 0.00 0.00 0.00 4.08
3923 3979 4.561606 GCTTCATGTCATCTCAAATGCAAC 59.438 41.667 0.00 0.00 0.00 4.17
3924 3980 5.621555 GCTTCATGTCATCTCAAATGCAACT 60.622 40.000 0.00 0.00 0.00 3.16
3925 3981 6.403964 GCTTCATGTCATCTCAAATGCAACTA 60.404 38.462 0.00 0.00 0.00 2.24
3926 3982 7.634671 TTCATGTCATCTCAAATGCAACTAT 57.365 32.000 0.00 0.00 0.00 2.12
3927 3983 7.255491 TCATGTCATCTCAAATGCAACTATC 57.745 36.000 0.00 0.00 0.00 2.08
3928 3984 5.723492 TGTCATCTCAAATGCAACTATCG 57.277 39.130 0.00 0.00 0.00 2.92
3929 3985 5.178061 TGTCATCTCAAATGCAACTATCGT 58.822 37.500 0.00 0.00 0.00 3.73
3930 3986 5.291858 TGTCATCTCAAATGCAACTATCGTC 59.708 40.000 0.00 0.00 0.00 4.20
3931 3987 4.811024 TCATCTCAAATGCAACTATCGTCC 59.189 41.667 0.00 0.00 0.00 4.79
3932 3988 3.531538 TCTCAAATGCAACTATCGTCCC 58.468 45.455 0.00 0.00 0.00 4.46
3933 3989 3.197766 TCTCAAATGCAACTATCGTCCCT 59.802 43.478 0.00 0.00 0.00 4.20
3934 3990 3.531538 TCAAATGCAACTATCGTCCCTC 58.468 45.455 0.00 0.00 0.00 4.30
3935 3991 2.225068 AATGCAACTATCGTCCCTCG 57.775 50.000 0.00 0.00 41.41 4.63
3936 3992 0.249489 ATGCAACTATCGTCCCTCGC 60.249 55.000 0.00 0.00 39.67 5.03
3937 3993 1.141019 GCAACTATCGTCCCTCGCA 59.859 57.895 0.00 0.00 39.67 5.10
3938 3994 0.249489 GCAACTATCGTCCCTCGCAT 60.249 55.000 0.00 0.00 39.67 4.73
3939 3995 1.806623 GCAACTATCGTCCCTCGCATT 60.807 52.381 0.00 0.00 39.67 3.56
3940 3996 2.550978 CAACTATCGTCCCTCGCATTT 58.449 47.619 0.00 0.00 39.67 2.32
3941 3997 3.713288 CAACTATCGTCCCTCGCATTTA 58.287 45.455 0.00 0.00 39.67 1.40
3942 3998 3.366440 ACTATCGTCCCTCGCATTTAC 57.634 47.619 0.00 0.00 39.67 2.01
3943 3999 2.035576 ACTATCGTCCCTCGCATTTACC 59.964 50.000 0.00 0.00 39.67 2.85
3944 4000 1.120530 ATCGTCCCTCGCATTTACCT 58.879 50.000 0.00 0.00 39.67 3.08
3945 4001 0.458669 TCGTCCCTCGCATTTACCTC 59.541 55.000 0.00 0.00 39.67 3.85
3946 4002 0.870307 CGTCCCTCGCATTTACCTCG 60.870 60.000 0.00 0.00 0.00 4.63
3947 4003 1.143183 TCCCTCGCATTTACCTCGC 59.857 57.895 0.00 0.00 0.00 5.03
3948 4004 1.153449 CCCTCGCATTTACCTCGCA 60.153 57.895 0.00 0.00 0.00 5.10
3949 4005 0.742990 CCCTCGCATTTACCTCGCAA 60.743 55.000 0.00 0.00 0.00 4.85
3950 4006 1.083489 CCTCGCATTTACCTCGCAAA 58.917 50.000 0.00 0.00 0.00 3.68
3951 4007 1.466950 CCTCGCATTTACCTCGCAAAA 59.533 47.619 0.00 0.00 0.00 2.44
3952 4008 2.097466 CCTCGCATTTACCTCGCAAAAT 59.903 45.455 0.00 0.00 0.00 1.82
3953 4009 3.100817 CTCGCATTTACCTCGCAAAATG 58.899 45.455 3.93 3.93 43.05 2.32
3954 4010 2.159448 TCGCATTTACCTCGCAAAATGG 60.159 45.455 9.18 0.00 41.35 3.16
3955 4011 2.539476 GCATTTACCTCGCAAAATGGG 58.461 47.619 9.18 0.00 41.35 4.00
3956 4012 2.094234 GCATTTACCTCGCAAAATGGGT 60.094 45.455 9.18 0.00 41.35 4.51
3957 4013 3.510719 CATTTACCTCGCAAAATGGGTG 58.489 45.455 0.00 0.00 38.73 4.61
3958 4014 2.279935 TTACCTCGCAAAATGGGTGT 57.720 45.000 0.00 0.00 33.74 4.16
3959 4015 2.279935 TACCTCGCAAAATGGGTGTT 57.720 45.000 0.00 0.00 33.74 3.32
3960 4016 1.408969 ACCTCGCAAAATGGGTGTTT 58.591 45.000 0.00 0.00 0.00 2.83
3961 4017 1.068434 ACCTCGCAAAATGGGTGTTTG 59.932 47.619 0.00 0.00 38.69 2.93
3962 4018 1.068434 CCTCGCAAAATGGGTGTTTGT 59.932 47.619 0.00 0.00 38.09 2.83
3963 4019 2.294791 CCTCGCAAAATGGGTGTTTGTA 59.705 45.455 0.00 0.00 38.09 2.41
3964 4020 3.305110 CTCGCAAAATGGGTGTTTGTAC 58.695 45.455 0.00 0.00 38.09 2.90
3965 4021 2.688446 TCGCAAAATGGGTGTTTGTACA 59.312 40.909 0.00 0.00 38.09 2.90
3966 4022 3.319405 TCGCAAAATGGGTGTTTGTACAT 59.681 39.130 0.00 0.00 38.09 2.29
3967 4023 3.428198 CGCAAAATGGGTGTTTGTACATG 59.572 43.478 0.00 0.00 38.09 3.21
3968 4024 4.626042 GCAAAATGGGTGTTTGTACATGA 58.374 39.130 0.00 0.00 38.09 3.07
3969 4025 4.447389 GCAAAATGGGTGTTTGTACATGAC 59.553 41.667 0.00 0.00 38.09 3.06
3970 4026 5.595885 CAAAATGGGTGTTTGTACATGACA 58.404 37.500 0.00 2.22 36.50 3.58
3971 4027 6.222389 CAAAATGGGTGTTTGTACATGACAT 58.778 36.000 13.63 3.86 38.07 3.06
3972 4028 5.643379 AATGGGTGTTTGTACATGACATC 57.357 39.130 13.63 13.01 38.07 3.06
3973 4029 4.365514 TGGGTGTTTGTACATGACATCT 57.634 40.909 17.58 0.00 38.07 2.90
3974 4030 4.724399 TGGGTGTTTGTACATGACATCTT 58.276 39.130 17.58 0.00 38.07 2.40
3975 4031 5.870706 TGGGTGTTTGTACATGACATCTTA 58.129 37.500 17.58 8.70 38.07 2.10
3976 4032 6.480763 TGGGTGTTTGTACATGACATCTTAT 58.519 36.000 17.58 0.00 38.07 1.73
3977 4033 6.945435 TGGGTGTTTGTACATGACATCTTATT 59.055 34.615 17.58 0.00 38.07 1.40
3978 4034 8.103935 TGGGTGTTTGTACATGACATCTTATTA 58.896 33.333 17.58 3.54 38.07 0.98
3979 4035 8.395633 GGGTGTTTGTACATGACATCTTATTAC 58.604 37.037 17.58 4.64 38.07 1.89
3980 4036 8.395633 GGTGTTTGTACATGACATCTTATTACC 58.604 37.037 13.63 6.18 38.07 2.85
3981 4037 8.941977 GTGTTTGTACATGACATCTTATTACCA 58.058 33.333 13.63 0.00 38.07 3.25
3982 4038 8.941977 TGTTTGTACATGACATCTTATTACCAC 58.058 33.333 0.00 0.00 38.07 4.16
3983 4039 8.395633 GTTTGTACATGACATCTTATTACCACC 58.604 37.037 0.00 0.00 38.07 4.61
3984 4040 6.588204 TGTACATGACATCTTATTACCACCC 58.412 40.000 0.00 0.00 31.20 4.61
3985 4041 5.708736 ACATGACATCTTATTACCACCCA 57.291 39.130 0.00 0.00 0.00 4.51
3986 4042 6.073447 ACATGACATCTTATTACCACCCAA 57.927 37.500 0.00 0.00 0.00 4.12
3987 4043 6.489603 ACATGACATCTTATTACCACCCAAA 58.510 36.000 0.00 0.00 0.00 3.28
3988 4044 6.951198 ACATGACATCTTATTACCACCCAAAA 59.049 34.615 0.00 0.00 0.00 2.44
3989 4045 7.619302 ACATGACATCTTATTACCACCCAAAAT 59.381 33.333 0.00 0.00 0.00 1.82
3990 4046 7.403312 TGACATCTTATTACCACCCAAAATG 57.597 36.000 0.00 0.00 0.00 2.32
3991 4047 7.178573 TGACATCTTATTACCACCCAAAATGA 58.821 34.615 0.00 0.00 0.00 2.57
3992 4048 7.838696 TGACATCTTATTACCACCCAAAATGAT 59.161 33.333 0.00 0.00 0.00 2.45
3993 4049 9.349713 GACATCTTATTACCACCCAAAATGATA 57.650 33.333 0.00 0.00 0.00 2.15
3994 4050 9.881773 ACATCTTATTACCACCCAAAATGATAT 57.118 29.630 0.00 0.00 0.00 1.63
3996 4052 9.881773 ATCTTATTACCACCCAAAATGATATGT 57.118 29.630 0.00 0.00 0.00 2.29
4018 4074 5.761234 TGTTAAGAGTATTTTCAACAGCCGT 59.239 36.000 0.00 0.00 0.00 5.68
4026 4082 0.393132 TTCAACAGCCGTCCAACACA 60.393 50.000 0.00 0.00 0.00 3.72
4153 4212 0.593128 CAGGCGCACTAAAAAGCAGT 59.407 50.000 10.83 0.00 0.00 4.40
4186 4245 0.726827 CGACGCTTGCCATATGTTGT 59.273 50.000 1.24 0.00 0.00 3.32
4203 4263 9.995957 CATATGTTGTATTTTGGACACGAAATA 57.004 29.630 0.00 0.00 40.38 1.40
4251 4315 7.047271 ACATGGCATAATTTAAATCACCCAAC 58.953 34.615 0.00 0.00 0.00 3.77
4252 4316 6.611613 TGGCATAATTTAAATCACCCAACA 57.388 33.333 0.10 0.00 0.00 3.33
4254 4318 7.102346 TGGCATAATTTAAATCACCCAACAAG 58.898 34.615 0.10 0.00 0.00 3.16
4255 4319 7.102993 GGCATAATTTAAATCACCCAACAAGT 58.897 34.615 0.10 0.00 0.00 3.16
4257 4321 8.655970 GCATAATTTAAATCACCCAACAAGTTC 58.344 33.333 0.10 0.00 0.00 3.01
4258 4322 9.703892 CATAATTTAAATCACCCAACAAGTTCA 57.296 29.630 0.10 0.00 0.00 3.18
4268 4335 5.415389 CACCCAACAAGTTCATGATGACATA 59.585 40.000 0.00 0.00 35.09 2.29
4280 4347 9.630098 GTTCATGATGACATAAAAAGTTCATGT 57.370 29.630 0.00 0.00 39.76 3.21
4331 4398 6.268387 ACATCATCCAACCAAGTTCAAAATCT 59.732 34.615 0.00 0.00 0.00 2.40
4416 4489 3.382865 CCTCGTCTTCATCCTCATCTTCA 59.617 47.826 0.00 0.00 0.00 3.02
4489 4568 2.250485 GCGCCGCATCATCATGTC 59.750 61.111 3.15 0.00 31.86 3.06
4508 4587 0.250295 CAAGCTCGGAAGGTGTTGGA 60.250 55.000 0.00 0.00 32.35 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.651389 TCCCTTTGATATATCTGACCAGTTTAG 58.349 37.037 13.79 0.00 0.00 1.85
194 201 8.989980 GCTCCAATACCACTATTATGTACTTTC 58.010 37.037 0.00 0.00 0.00 2.62
220 227 4.732923 CACACCACAAAAACAGTTGATACG 59.267 41.667 0.00 0.00 32.59 3.06
307 316 6.721571 TTGACCGTTCATCTCATTTACTTC 57.278 37.500 0.00 0.00 0.00 3.01
396 406 8.629986 CGTAATATCAAGTTGCAAAAGACAAAG 58.370 33.333 0.00 0.00 0.00 2.77
413 423 9.675464 ACCTTTTCATTAAACCTCGTAATATCA 57.325 29.630 0.00 0.00 0.00 2.15
414 424 9.931210 CACCTTTTCATTAAACCTCGTAATATC 57.069 33.333 0.00 0.00 0.00 1.63
415 425 9.457436 ACACCTTTTCATTAAACCTCGTAATAT 57.543 29.630 0.00 0.00 0.00 1.28
417 427 7.229907 ACACACCTTTTCATTAAACCTCGTAAT 59.770 33.333 0.00 0.00 0.00 1.89
418 428 6.543100 ACACACCTTTTCATTAAACCTCGTAA 59.457 34.615 0.00 0.00 0.00 3.18
419 429 6.056884 ACACACCTTTTCATTAAACCTCGTA 58.943 36.000 0.00 0.00 0.00 3.43
420 430 4.885325 ACACACCTTTTCATTAAACCTCGT 59.115 37.500 0.00 0.00 0.00 4.18
421 431 5.432885 ACACACCTTTTCATTAAACCTCG 57.567 39.130 0.00 0.00 0.00 4.63
422 432 7.739498 TCTACACACCTTTTCATTAAACCTC 57.261 36.000 0.00 0.00 0.00 3.85
423 433 7.778382 AGTTCTACACACCTTTTCATTAAACCT 59.222 33.333 0.00 0.00 0.00 3.50
424 434 7.860872 CAGTTCTACACACCTTTTCATTAAACC 59.139 37.037 0.00 0.00 0.00 3.27
425 435 7.378728 GCAGTTCTACACACCTTTTCATTAAAC 59.621 37.037 0.00 0.00 0.00 2.01
426 436 7.284489 AGCAGTTCTACACACCTTTTCATTAAA 59.716 33.333 0.00 0.00 0.00 1.52
427 437 6.770785 AGCAGTTCTACACACCTTTTCATTAA 59.229 34.615 0.00 0.00 0.00 1.40
428 438 6.296026 AGCAGTTCTACACACCTTTTCATTA 58.704 36.000 0.00 0.00 0.00 1.90
429 439 5.133221 AGCAGTTCTACACACCTTTTCATT 58.867 37.500 0.00 0.00 0.00 2.57
430 440 4.718961 AGCAGTTCTACACACCTTTTCAT 58.281 39.130 0.00 0.00 0.00 2.57
431 441 4.150897 AGCAGTTCTACACACCTTTTCA 57.849 40.909 0.00 0.00 0.00 2.69
432 442 4.335594 ACAAGCAGTTCTACACACCTTTTC 59.664 41.667 0.00 0.00 0.00 2.29
433 443 4.270008 ACAAGCAGTTCTACACACCTTTT 58.730 39.130 0.00 0.00 0.00 2.27
434 444 3.877508 GACAAGCAGTTCTACACACCTTT 59.122 43.478 0.00 0.00 0.00 3.11
435 445 3.467803 GACAAGCAGTTCTACACACCTT 58.532 45.455 0.00 0.00 0.00 3.50
436 446 2.224305 GGACAAGCAGTTCTACACACCT 60.224 50.000 0.00 0.00 0.00 4.00
437 447 2.143925 GGACAAGCAGTTCTACACACC 58.856 52.381 0.00 0.00 0.00 4.16
438 448 2.143925 GGGACAAGCAGTTCTACACAC 58.856 52.381 0.00 0.00 0.00 3.82
439 449 2.047061 AGGGACAAGCAGTTCTACACA 58.953 47.619 0.00 0.00 0.00 3.72
440 450 2.037251 TCAGGGACAAGCAGTTCTACAC 59.963 50.000 0.00 0.00 0.00 2.90
441 451 2.325484 TCAGGGACAAGCAGTTCTACA 58.675 47.619 0.00 0.00 0.00 2.74
442 452 3.402628 TTCAGGGACAAGCAGTTCTAC 57.597 47.619 0.00 0.00 0.00 2.59
443 453 4.565652 GGATTTCAGGGACAAGCAGTTCTA 60.566 45.833 0.00 0.00 0.00 2.10
444 454 3.416156 GATTTCAGGGACAAGCAGTTCT 58.584 45.455 0.00 0.00 0.00 3.01
445 455 2.489722 GGATTTCAGGGACAAGCAGTTC 59.510 50.000 0.00 0.00 0.00 3.01
446 456 2.158475 TGGATTTCAGGGACAAGCAGTT 60.158 45.455 0.00 0.00 0.00 3.16
447 457 1.425066 TGGATTTCAGGGACAAGCAGT 59.575 47.619 0.00 0.00 0.00 4.40
448 458 2.205022 TGGATTTCAGGGACAAGCAG 57.795 50.000 0.00 0.00 0.00 4.24
449 459 2.449464 CATGGATTTCAGGGACAAGCA 58.551 47.619 0.00 0.00 0.00 3.91
450 460 1.135721 GCATGGATTTCAGGGACAAGC 59.864 52.381 0.00 0.00 0.00 4.01
451 461 2.165030 GTGCATGGATTTCAGGGACAAG 59.835 50.000 0.00 0.00 45.62 3.16
452 462 2.170166 GTGCATGGATTTCAGGGACAA 58.830 47.619 0.00 0.00 45.62 3.18
453 463 1.838112 GTGCATGGATTTCAGGGACA 58.162 50.000 0.00 0.00 45.62 4.02
454 464 1.838112 TGTGCATGGATTTCAGGGAC 58.162 50.000 0.00 0.00 46.31 4.46
455 465 2.601240 TTGTGCATGGATTTCAGGGA 57.399 45.000 0.00 0.00 0.00 4.20
456 466 3.173668 CATTGTGCATGGATTTCAGGG 57.826 47.619 0.00 0.00 0.00 4.45
466 476 2.689646 TGCATGAAACCATTGTGCATG 58.310 42.857 0.00 0.00 40.51 4.06
469 479 4.244066 TGTTATGCATGAAACCATTGTGC 58.756 39.130 10.16 0.00 36.39 4.57
470 480 5.472148 ACTGTTATGCATGAAACCATTGTG 58.528 37.500 10.16 0.00 0.00 3.33
471 481 5.726980 ACTGTTATGCATGAAACCATTGT 57.273 34.783 10.16 1.32 0.00 2.71
472 482 6.254157 GCTAACTGTTATGCATGAAACCATTG 59.746 38.462 10.16 0.75 0.00 2.82
473 483 6.332630 GCTAACTGTTATGCATGAAACCATT 58.667 36.000 10.16 6.46 0.00 3.16
474 484 5.163519 GGCTAACTGTTATGCATGAAACCAT 60.164 40.000 10.16 0.00 0.00 3.55
475 485 4.157656 GGCTAACTGTTATGCATGAAACCA 59.842 41.667 10.16 0.00 0.00 3.67
476 486 4.399303 AGGCTAACTGTTATGCATGAAACC 59.601 41.667 10.16 0.00 0.00 3.27
477 487 5.449177 GGAGGCTAACTGTTATGCATGAAAC 60.449 44.000 10.16 7.45 0.00 2.78
478 488 4.640201 GGAGGCTAACTGTTATGCATGAAA 59.360 41.667 10.16 0.00 0.00 2.69
479 489 4.199310 GGAGGCTAACTGTTATGCATGAA 58.801 43.478 10.16 0.00 0.00 2.57
480 490 3.199727 TGGAGGCTAACTGTTATGCATGA 59.800 43.478 10.16 0.00 0.00 3.07
481 491 3.544684 TGGAGGCTAACTGTTATGCATG 58.455 45.455 10.16 0.00 0.00 4.06
482 492 3.931907 TGGAGGCTAACTGTTATGCAT 57.068 42.857 3.79 3.79 0.00 3.96
483 493 3.712016 TTGGAGGCTAACTGTTATGCA 57.288 42.857 17.50 0.00 0.00 3.96
484 494 4.640201 TGATTTGGAGGCTAACTGTTATGC 59.360 41.667 0.00 7.01 0.00 3.14
485 495 6.757897 TTGATTTGGAGGCTAACTGTTATG 57.242 37.500 0.00 0.00 0.00 1.90
486 496 7.961326 AATTGATTTGGAGGCTAACTGTTAT 57.039 32.000 0.00 0.00 0.00 1.89
487 497 9.474313 AATAATTGATTTGGAGGCTAACTGTTA 57.526 29.630 0.00 0.00 0.00 2.41
488 498 7.961326 ATAATTGATTTGGAGGCTAACTGTT 57.039 32.000 0.00 0.00 0.00 3.16
489 499 7.961326 AATAATTGATTTGGAGGCTAACTGT 57.039 32.000 0.00 0.00 0.00 3.55
490 500 8.469200 TGAAATAATTGATTTGGAGGCTAACTG 58.531 33.333 0.00 0.00 37.90 3.16
491 501 8.593945 TGAAATAATTGATTTGGAGGCTAACT 57.406 30.769 0.00 0.00 37.90 2.24
492 502 9.822185 AATGAAATAATTGATTTGGAGGCTAAC 57.178 29.630 0.00 0.00 37.90 2.34
494 504 9.820725 CAAATGAAATAATTGATTTGGAGGCTA 57.179 29.630 7.36 0.00 42.70 3.93
495 505 7.281549 GCAAATGAAATAATTGATTTGGAGGCT 59.718 33.333 14.65 0.00 44.96 4.58
496 506 7.066043 TGCAAATGAAATAATTGATTTGGAGGC 59.934 33.333 14.65 3.96 44.96 4.70
497 507 8.392612 GTGCAAATGAAATAATTGATTTGGAGG 58.607 33.333 14.65 0.00 45.62 4.30
498 508 8.111836 CGTGCAAATGAAATAATTGATTTGGAG 58.888 33.333 14.65 5.36 45.62 3.86
499 509 7.816513 TCGTGCAAATGAAATAATTGATTTGGA 59.183 29.630 14.65 10.47 44.96 3.53
500 510 7.961855 TCGTGCAAATGAAATAATTGATTTGG 58.038 30.769 14.65 2.23 44.96 3.28
501 511 8.649841 ACTCGTGCAAATGAAATAATTGATTTG 58.350 29.630 10.13 10.13 46.49 2.32
502 512 8.761575 ACTCGTGCAAATGAAATAATTGATTT 57.238 26.923 0.00 0.00 40.62 2.17
505 515 9.853555 AAATACTCGTGCAAATGAAATAATTGA 57.146 25.926 0.00 0.00 0.00 2.57
533 543 9.614792 AGCGATAGTCTAGGATTGTTAAATTTT 57.385 29.630 0.00 0.00 39.35 1.82
535 545 9.915629 CTAGCGATAGTCTAGGATTGTTAAATT 57.084 33.333 0.00 0.00 38.39 1.82
536 546 8.030106 GCTAGCGATAGTCTAGGATTGTTAAAT 58.970 37.037 9.80 0.00 40.67 1.40
537 547 7.368833 GCTAGCGATAGTCTAGGATTGTTAAA 58.631 38.462 9.80 0.00 40.67 1.52
538 548 6.072064 GGCTAGCGATAGTCTAGGATTGTTAA 60.072 42.308 9.80 0.00 40.67 2.01
539 549 5.415077 GGCTAGCGATAGTCTAGGATTGTTA 59.585 44.000 9.80 0.00 40.67 2.41
540 550 4.218852 GGCTAGCGATAGTCTAGGATTGTT 59.781 45.833 9.80 0.00 40.67 2.83
541 551 3.759618 GGCTAGCGATAGTCTAGGATTGT 59.240 47.826 9.80 0.00 40.67 2.71
542 552 4.013728 AGGCTAGCGATAGTCTAGGATTG 58.986 47.826 14.15 0.00 40.67 2.67
543 553 4.310022 AGGCTAGCGATAGTCTAGGATT 57.690 45.455 14.15 0.00 40.67 3.01
544 554 5.640158 ATAGGCTAGCGATAGTCTAGGAT 57.360 43.478 24.48 8.97 37.64 3.24
545 555 5.438698 AATAGGCTAGCGATAGTCTAGGA 57.561 43.478 24.48 6.94 37.64 2.94
546 556 6.350906 ACTAATAGGCTAGCGATAGTCTAGG 58.649 44.000 24.48 18.58 37.64 3.02
547 557 7.334921 ACAACTAATAGGCTAGCGATAGTCTAG 59.665 40.741 24.48 16.56 37.64 2.43
548 558 7.166851 ACAACTAATAGGCTAGCGATAGTCTA 58.833 38.462 22.93 22.93 38.47 2.59
549 559 6.005198 ACAACTAATAGGCTAGCGATAGTCT 58.995 40.000 19.86 19.86 35.91 3.24
550 560 6.256912 ACAACTAATAGGCTAGCGATAGTC 57.743 41.667 3.61 3.61 39.35 2.59
551 561 5.183522 GGACAACTAATAGGCTAGCGATAGT 59.816 44.000 9.80 10.92 39.35 2.12
552 562 5.183331 TGGACAACTAATAGGCTAGCGATAG 59.817 44.000 9.00 2.61 0.00 2.08
553 563 5.048224 GTGGACAACTAATAGGCTAGCGATA 60.048 44.000 9.00 4.63 0.00 2.92
554 564 3.895656 TGGACAACTAATAGGCTAGCGAT 59.104 43.478 9.00 1.41 0.00 4.58
555 565 3.067742 GTGGACAACTAATAGGCTAGCGA 59.932 47.826 9.00 0.00 0.00 4.93
556 566 3.381949 GTGGACAACTAATAGGCTAGCG 58.618 50.000 9.00 0.00 0.00 4.26
557 567 3.067742 TCGTGGACAACTAATAGGCTAGC 59.932 47.826 6.04 6.04 0.00 3.42
558 568 4.261656 CCTCGTGGACAACTAATAGGCTAG 60.262 50.000 0.00 0.00 34.57 3.42
559 569 3.635373 CCTCGTGGACAACTAATAGGCTA 59.365 47.826 0.00 0.00 34.57 3.93
560 570 2.431057 CCTCGTGGACAACTAATAGGCT 59.569 50.000 0.00 0.00 34.57 4.58
561 571 2.167900 ACCTCGTGGACAACTAATAGGC 59.832 50.000 11.17 0.00 37.04 3.93
562 572 3.700038 AGACCTCGTGGACAACTAATAGG 59.300 47.826 11.17 0.00 37.04 2.57
563 573 4.398358 TCAGACCTCGTGGACAACTAATAG 59.602 45.833 11.17 0.00 37.04 1.73
564 574 4.338012 TCAGACCTCGTGGACAACTAATA 58.662 43.478 11.17 0.00 37.04 0.98
565 575 3.162666 TCAGACCTCGTGGACAACTAAT 58.837 45.455 11.17 0.00 37.04 1.73
566 576 2.557056 CTCAGACCTCGTGGACAACTAA 59.443 50.000 11.17 0.00 37.04 2.24
567 577 2.160205 CTCAGACCTCGTGGACAACTA 58.840 52.381 11.17 0.00 37.04 2.24
568 578 0.962489 CTCAGACCTCGTGGACAACT 59.038 55.000 11.17 1.47 37.04 3.16
569 579 0.038159 CCTCAGACCTCGTGGACAAC 60.038 60.000 11.17 0.00 37.04 3.32
570 580 1.185618 CCCTCAGACCTCGTGGACAA 61.186 60.000 11.17 0.00 37.04 3.18
571 581 1.606601 CCCTCAGACCTCGTGGACA 60.607 63.158 11.17 0.00 37.04 4.02
572 582 3.007973 GCCCTCAGACCTCGTGGAC 62.008 68.421 11.17 3.92 37.04 4.02
573 583 2.680352 GCCCTCAGACCTCGTGGA 60.680 66.667 11.17 0.00 37.04 4.02
574 584 2.681778 AGCCCTCAGACCTCGTGG 60.682 66.667 0.99 0.99 39.83 4.94
575 585 2.575993 CAGCCCTCAGACCTCGTG 59.424 66.667 0.00 0.00 0.00 4.35
576 586 3.386237 GCAGCCCTCAGACCTCGT 61.386 66.667 0.00 0.00 0.00 4.18
577 587 3.368190 CTGCAGCCCTCAGACCTCG 62.368 68.421 0.00 0.00 33.54 4.63
578 588 1.835927 AACTGCAGCCCTCAGACCTC 61.836 60.000 15.27 0.00 35.61 3.85
579 589 0.545309 TAACTGCAGCCCTCAGACCT 60.545 55.000 15.27 0.00 35.61 3.85
580 590 0.543749 ATAACTGCAGCCCTCAGACC 59.456 55.000 15.27 0.00 35.61 3.85
581 591 3.760580 ATATAACTGCAGCCCTCAGAC 57.239 47.619 15.27 0.00 35.61 3.51
582 592 6.439636 AAATATATAACTGCAGCCCTCAGA 57.560 37.500 15.27 0.00 35.61 3.27
583 593 6.712095 TGAAAATATATAACTGCAGCCCTCAG 59.288 38.462 15.27 0.00 37.56 3.35
584 594 6.486657 GTGAAAATATATAACTGCAGCCCTCA 59.513 38.462 15.27 0.00 0.00 3.86
585 595 6.486657 TGTGAAAATATATAACTGCAGCCCTC 59.513 38.462 15.27 0.00 0.00 4.30
586 596 6.263168 GTGTGAAAATATATAACTGCAGCCCT 59.737 38.462 15.27 0.62 0.00 5.19
587 597 6.263168 AGTGTGAAAATATATAACTGCAGCCC 59.737 38.462 15.27 0.00 0.00 5.19
588 598 7.134815 CAGTGTGAAAATATATAACTGCAGCC 58.865 38.462 15.27 0.00 0.00 4.85
589 599 7.697691 ACAGTGTGAAAATATATAACTGCAGC 58.302 34.615 15.27 0.00 37.63 5.25
591 601 9.325198 CCTACAGTGTGAAAATATATAACTGCA 57.675 33.333 5.88 0.00 37.63 4.41
592 602 8.774586 CCCTACAGTGTGAAAATATATAACTGC 58.225 37.037 5.88 0.00 37.63 4.40
598 608 8.768397 TGAAGTCCCTACAGTGTGAAAATATAT 58.232 33.333 5.88 0.00 0.00 0.86
599 609 8.141298 TGAAGTCCCTACAGTGTGAAAATATA 57.859 34.615 5.88 0.00 0.00 0.86
600 610 7.016153 TGAAGTCCCTACAGTGTGAAAATAT 57.984 36.000 5.88 0.00 0.00 1.28
601 611 6.428083 TGAAGTCCCTACAGTGTGAAAATA 57.572 37.500 5.88 0.00 0.00 1.40
602 612 5.304686 TGAAGTCCCTACAGTGTGAAAAT 57.695 39.130 5.88 0.00 0.00 1.82
603 613 4.764050 TGAAGTCCCTACAGTGTGAAAA 57.236 40.909 5.88 0.00 0.00 2.29
604 614 4.703897 CTTGAAGTCCCTACAGTGTGAAA 58.296 43.478 5.88 0.00 0.00 2.69
605 615 3.494398 GCTTGAAGTCCCTACAGTGTGAA 60.494 47.826 5.88 0.00 0.00 3.18
606 616 2.037251 GCTTGAAGTCCCTACAGTGTGA 59.963 50.000 5.88 0.00 0.00 3.58
607 617 2.037772 AGCTTGAAGTCCCTACAGTGTG 59.962 50.000 5.88 0.00 0.00 3.82
608 618 2.330216 AGCTTGAAGTCCCTACAGTGT 58.670 47.619 0.00 0.00 0.00 3.55
609 619 3.409026 AAGCTTGAAGTCCCTACAGTG 57.591 47.619 0.00 0.00 0.00 3.66
610 620 4.593634 ACTAAAGCTTGAAGTCCCTACAGT 59.406 41.667 0.00 0.00 0.00 3.55
611 621 5.153950 ACTAAAGCTTGAAGTCCCTACAG 57.846 43.478 0.00 0.00 0.00 2.74
612 622 5.071250 TCAACTAAAGCTTGAAGTCCCTACA 59.929 40.000 13.50 0.00 0.00 2.74
613 623 5.548406 TCAACTAAAGCTTGAAGTCCCTAC 58.452 41.667 13.50 0.00 0.00 3.18
614 624 5.818678 TCAACTAAAGCTTGAAGTCCCTA 57.181 39.130 13.50 0.00 0.00 3.53
615 625 4.706842 TCAACTAAAGCTTGAAGTCCCT 57.293 40.909 13.50 0.00 0.00 4.20
616 626 5.363979 CTTCAACTAAAGCTTGAAGTCCC 57.636 43.478 14.39 0.00 45.10 4.46
647 657 9.416794 CGTTATTGAATAAGACAGATAGCATCT 57.583 33.333 0.00 0.00 41.15 2.90
648 658 8.651588 CCGTTATTGAATAAGACAGATAGCATC 58.348 37.037 0.00 0.00 0.00 3.91
649 659 8.367911 TCCGTTATTGAATAAGACAGATAGCAT 58.632 33.333 0.00 0.00 0.00 3.79
650 660 7.722363 TCCGTTATTGAATAAGACAGATAGCA 58.278 34.615 0.00 0.00 0.00 3.49
651 661 8.651588 CATCCGTTATTGAATAAGACAGATAGC 58.348 37.037 0.00 0.00 0.00 2.97
652 662 9.698309 ACATCCGTTATTGAATAAGACAGATAG 57.302 33.333 0.00 0.00 0.00 2.08
654 664 8.830580 CAACATCCGTTATTGAATAAGACAGAT 58.169 33.333 0.00 0.00 32.75 2.90
655 665 7.822334 ACAACATCCGTTATTGAATAAGACAGA 59.178 33.333 0.00 0.00 32.75 3.41
656 666 7.974675 ACAACATCCGTTATTGAATAAGACAG 58.025 34.615 0.00 0.00 32.75 3.51
657 667 7.915293 ACAACATCCGTTATTGAATAAGACA 57.085 32.000 0.00 0.00 32.75 3.41
658 668 8.665685 AGAACAACATCCGTTATTGAATAAGAC 58.334 33.333 0.00 0.00 32.75 3.01
659 669 8.786826 AGAACAACATCCGTTATTGAATAAGA 57.213 30.769 0.00 0.00 32.75 2.10
660 670 9.840427 AAAGAACAACATCCGTTATTGAATAAG 57.160 29.630 0.00 0.00 32.75 1.73
698 708 6.585695 ACTCGTTCCTTGTAGACAATTCTA 57.414 37.500 0.00 0.00 35.02 2.10
699 709 5.470047 ACTCGTTCCTTGTAGACAATTCT 57.530 39.130 0.00 0.00 35.02 2.40
700 710 7.647907 TTTACTCGTTCCTTGTAGACAATTC 57.352 36.000 0.00 0.00 35.02 2.17
701 711 8.617290 ATTTTACTCGTTCCTTGTAGACAATT 57.383 30.769 0.00 0.00 35.02 2.32
702 712 8.617290 AATTTTACTCGTTCCTTGTAGACAAT 57.383 30.769 0.00 0.00 35.02 2.71
703 713 8.441312 AAATTTTACTCGTTCCTTGTAGACAA 57.559 30.769 0.00 0.00 0.00 3.18
704 714 9.715121 ATAAATTTTACTCGTTCCTTGTAGACA 57.285 29.630 0.00 0.00 0.00 3.41
716 726 9.662947 AGGCACTAACTAATAAATTTTACTCGT 57.337 29.630 0.00 0.00 36.02 4.18
717 727 9.916397 CAGGCACTAACTAATAAATTTTACTCG 57.084 33.333 0.00 0.00 36.02 4.18
725 735 9.988815 CACTCTATCAGGCACTAACTAATAAAT 57.011 33.333 0.00 0.00 36.02 1.40
726 736 9.197306 TCACTCTATCAGGCACTAACTAATAAA 57.803 33.333 0.00 0.00 36.02 1.40
727 737 8.762481 TCACTCTATCAGGCACTAACTAATAA 57.238 34.615 0.00 0.00 36.02 1.40
728 738 8.941995 ATCACTCTATCAGGCACTAACTAATA 57.058 34.615 0.00 0.00 36.02 0.98
729 739 7.847711 ATCACTCTATCAGGCACTAACTAAT 57.152 36.000 0.00 0.00 36.02 1.73
730 740 7.999545 ACTATCACTCTATCAGGCACTAACTAA 59.000 37.037 0.00 0.00 36.02 2.24
731 741 7.519057 ACTATCACTCTATCAGGCACTAACTA 58.481 38.462 0.00 0.00 36.02 2.24
732 742 6.369629 ACTATCACTCTATCAGGCACTAACT 58.630 40.000 0.00 0.00 36.02 2.24
733 743 6.642707 ACTATCACTCTATCAGGCACTAAC 57.357 41.667 0.00 0.00 36.02 2.34
734 744 6.833933 TCAACTATCACTCTATCAGGCACTAA 59.166 38.462 0.00 0.00 36.02 2.24
735 745 6.365520 TCAACTATCACTCTATCAGGCACTA 58.634 40.000 0.00 0.00 36.02 2.74
736 746 5.204292 TCAACTATCACTCTATCAGGCACT 58.796 41.667 0.00 0.00 43.88 4.40
737 747 5.521906 TCAACTATCACTCTATCAGGCAC 57.478 43.478 0.00 0.00 0.00 5.01
738 748 5.658634 AGTTCAACTATCACTCTATCAGGCA 59.341 40.000 0.00 0.00 0.00 4.75
739 749 5.982516 CAGTTCAACTATCACTCTATCAGGC 59.017 44.000 0.00 0.00 0.00 4.85
740 750 7.068103 AGACAGTTCAACTATCACTCTATCAGG 59.932 40.741 0.00 0.00 0.00 3.86
787 797 5.221722 TGGTAAGATGACATTAGATGGGCTC 60.222 44.000 0.00 0.00 33.60 4.70
789 799 4.973168 TGGTAAGATGACATTAGATGGGC 58.027 43.478 0.00 0.00 33.60 5.36
819 829 6.324770 TGGAGAGTATTGTGATTCAGCATAGA 59.675 38.462 0.00 0.00 0.00 1.98
820 830 6.423302 GTGGAGAGTATTGTGATTCAGCATAG 59.577 42.308 0.00 0.00 0.00 2.23
821 831 6.127083 TGTGGAGAGTATTGTGATTCAGCATA 60.127 38.462 0.00 0.00 0.00 3.14
839 849 4.561530 GCTTGAATGTACTCACTGTGGAGA 60.562 45.833 8.11 0.00 38.30 3.71
863 873 2.954318 GGCACATCCAAATAGATGCTGT 59.046 45.455 1.53 0.00 46.29 4.40
865 875 3.589951 AGGCACATCCAAATAGATGCT 57.410 42.857 1.53 0.00 46.29 3.79
866 876 4.392940 ACTAGGCACATCCAAATAGATGC 58.607 43.478 1.53 0.00 46.29 3.91
868 878 6.784969 AGAGTACTAGGCACATCCAAATAGAT 59.215 38.462 0.00 0.00 37.29 1.98
869 879 6.136857 AGAGTACTAGGCACATCCAAATAGA 58.863 40.000 0.00 0.00 37.29 1.98
870 880 6.412362 AGAGTACTAGGCACATCCAAATAG 57.588 41.667 0.00 0.00 37.29 1.73
874 901 3.637229 GCTAGAGTACTAGGCACATCCAA 59.363 47.826 0.00 0.00 44.33 3.53
956 984 7.598278 ACGAATATGACAAGCATAAAACCAAA 58.402 30.769 0.00 0.00 42.45 3.28
979 1007 1.135972 CAGTTCCTTCCGCAATGAACG 60.136 52.381 2.18 0.00 40.33 3.95
995 1023 9.750125 GAAAATTAAGAAAACACTCCATCAGTT 57.250 29.630 0.00 0.00 30.26 3.16
1038 1066 2.538037 TGCGTTTCCATAACGATCATCG 59.462 45.455 5.22 5.22 45.64 3.84
1225 1254 4.644685 TTCACTAGTTGAAAGCTTTTGCCT 59.355 37.500 14.05 11.22 42.21 4.75
1243 1272 6.209192 TGAATTTGTGCAGAACCATATTCACT 59.791 34.615 14.19 0.00 30.37 3.41
1374 1404 0.832135 CTGGGAGGGAGCGGCTTATA 60.832 60.000 2.97 0.00 0.00 0.98
1483 1514 2.969262 CCTAAAGTTTTTGGGGGCTTCA 59.031 45.455 0.00 0.00 30.82 3.02
1498 1529 4.608948 ATTCTAGATGCCGACCCTAAAG 57.391 45.455 0.00 0.00 0.00 1.85
1621 1652 6.040842 AGACATGCACCTTACAGTTCAAAAAT 59.959 34.615 0.00 0.00 0.00 1.82
1656 1687 2.898729 ACACTGACTGGTTCACTCAG 57.101 50.000 0.00 0.00 37.93 3.35
1657 1688 2.766263 AGAACACTGACTGGTTCACTCA 59.234 45.455 7.20 0.00 44.46 3.41
1842 1874 4.082949 ACAGCTGCTATAAACCGAAAAACC 60.083 41.667 15.27 0.00 0.00 3.27
1849 1881 1.670811 CCCAACAGCTGCTATAAACCG 59.329 52.381 15.27 0.00 0.00 4.44
2161 2193 0.889306 ACAGTAAGCCGTCAGGACTC 59.111 55.000 0.00 0.00 41.02 3.36
2272 2304 6.486253 TGCTAACAACTTGAAAGAGCATAG 57.514 37.500 0.00 0.00 33.73 2.23
2319 2351 5.912955 GCAAAACAAACAGTGTACCTCATAC 59.087 40.000 0.00 0.00 40.60 2.39
2424 2456 0.883833 CAATAATGCGGCTCCCATCC 59.116 55.000 0.00 0.00 0.00 3.51
2789 2822 3.309954 GCGATGAGGTGAACAAAGGTATC 59.690 47.826 0.00 0.00 0.00 2.24
2793 2826 1.522668 TGCGATGAGGTGAACAAAGG 58.477 50.000 0.00 0.00 0.00 3.11
2989 3023 1.799258 GAGTTGCAGGTGGGTTGCTG 61.799 60.000 0.00 0.00 42.02 4.41
3040 3074 7.627300 GCAGGAGGAAATATGAGAAAACAGAAC 60.627 40.741 0.00 0.00 0.00 3.01
3121 3155 1.952990 GATCTCCTCTCATCACGCTCA 59.047 52.381 0.00 0.00 0.00 4.26
3178 3212 0.467804 CCTTAGCTTCTGGGGAGAGC 59.532 60.000 0.00 0.00 0.00 4.09
3199 3233 0.882042 GTGTAGGGCTGCGATCCATG 60.882 60.000 0.00 0.00 0.00 3.66
3214 3248 0.678684 TCCGACTGCGATCAGGTGTA 60.679 55.000 0.00 0.00 44.54 2.90
3286 3320 1.075482 CCTGCTCTTTTCCCTGCCA 59.925 57.895 0.00 0.00 0.00 4.92
3352 3386 2.019984 CCATTGTTAGCAGGGCTTCTC 58.980 52.381 0.00 0.00 40.44 2.87
3387 3421 4.284550 TGCCCCTGTTGTCCCTGC 62.285 66.667 0.00 0.00 0.00 4.85
3505 3539 0.397941 CTCTTGGTGAACCTGAGCCA 59.602 55.000 0.37 0.00 36.82 4.75
3514 3548 1.416401 ACGCTTCTTCCTCTTGGTGAA 59.584 47.619 0.00 0.00 34.23 3.18
3520 3554 1.273886 GGAGACACGCTTCTTCCTCTT 59.726 52.381 0.00 0.00 0.00 2.85
3591 3625 9.155053 CAAACGTCTTAAACTTGAAATGTACTC 57.845 33.333 0.00 0.00 0.00 2.59
3646 3680 3.724374 CGTCCAGGAACTAAACAACAGA 58.276 45.455 0.00 0.00 36.02 3.41
3652 3686 1.723220 GAGGCGTCCAGGAACTAAAC 58.277 55.000 0.00 0.00 36.02 2.01
3695 3733 5.049198 AGCATTATCAATCCATTACGCACAG 60.049 40.000 0.00 0.00 0.00 3.66
3770 3812 2.096174 CCACAAAACGTTTCGAAGACCA 59.904 45.455 15.01 0.00 34.32 4.02
3788 3839 3.860536 GTCATCGCTCTTTTCTACTCCAC 59.139 47.826 0.00 0.00 0.00 4.02
3789 3840 3.119101 GGTCATCGCTCTTTTCTACTCCA 60.119 47.826 0.00 0.00 0.00 3.86
3790 3841 3.119101 TGGTCATCGCTCTTTTCTACTCC 60.119 47.826 0.00 0.00 0.00 3.85
3791 3842 4.111375 TGGTCATCGCTCTTTTCTACTC 57.889 45.455 0.00 0.00 0.00 2.59
3792 3843 4.499183 CTTGGTCATCGCTCTTTTCTACT 58.501 43.478 0.00 0.00 0.00 2.57
3793 3844 3.062774 GCTTGGTCATCGCTCTTTTCTAC 59.937 47.826 0.00 0.00 0.00 2.59
3794 3845 3.262420 GCTTGGTCATCGCTCTTTTCTA 58.738 45.455 0.00 0.00 0.00 2.10
3795 3846 2.079925 GCTTGGTCATCGCTCTTTTCT 58.920 47.619 0.00 0.00 0.00 2.52
3796 3847 1.201965 CGCTTGGTCATCGCTCTTTTC 60.202 52.381 0.00 0.00 0.00 2.29
3797 3848 0.798776 CGCTTGGTCATCGCTCTTTT 59.201 50.000 0.00 0.00 0.00 2.27
3798 3849 0.320771 ACGCTTGGTCATCGCTCTTT 60.321 50.000 0.00 0.00 0.00 2.52
3799 3850 0.737715 GACGCTTGGTCATCGCTCTT 60.738 55.000 0.00 0.00 45.36 2.85
3800 3851 1.153745 GACGCTTGGTCATCGCTCT 60.154 57.895 0.00 0.00 45.36 4.09
3801 3852 3.389206 GACGCTTGGTCATCGCTC 58.611 61.111 0.00 0.00 45.36 5.03
3815 3866 1.654105 GTCCAGTGCGTGATTAAGACG 59.346 52.381 5.63 5.63 39.87 4.18
3816 3867 2.668457 CAGTCCAGTGCGTGATTAAGAC 59.332 50.000 0.00 0.00 0.00 3.01
3817 3868 2.560981 TCAGTCCAGTGCGTGATTAAGA 59.439 45.455 0.00 0.00 0.00 2.10
3818 3869 2.959516 TCAGTCCAGTGCGTGATTAAG 58.040 47.619 0.00 0.00 0.00 1.85
3819 3870 3.394674 TTCAGTCCAGTGCGTGATTAA 57.605 42.857 0.00 0.00 0.00 1.40
3820 3871 3.610040 ATTCAGTCCAGTGCGTGATTA 57.390 42.857 0.00 0.00 0.00 1.75
3821 3872 2.479566 ATTCAGTCCAGTGCGTGATT 57.520 45.000 0.00 0.00 0.00 2.57
3822 3873 3.827008 ATATTCAGTCCAGTGCGTGAT 57.173 42.857 0.00 0.00 0.00 3.06
3823 3874 4.937201 ATATATTCAGTCCAGTGCGTGA 57.063 40.909 0.00 0.00 0.00 4.35
3824 3875 5.523552 TGAAATATATTCAGTCCAGTGCGTG 59.476 40.000 0.00 0.00 0.00 5.34
3825 3876 5.670485 TGAAATATATTCAGTCCAGTGCGT 58.330 37.500 0.00 0.00 0.00 5.24
3826 3877 6.791887 ATGAAATATATTCAGTCCAGTGCG 57.208 37.500 0.00 0.00 0.00 5.34
3868 3919 8.430828 CACGATAATGCATTCTAAGATAGTGTG 58.569 37.037 16.86 9.12 0.00 3.82
3874 3925 8.124823 CACAAACACGATAATGCATTCTAAGAT 58.875 33.333 16.86 2.92 0.00 2.40
3877 3928 6.027131 GCACAAACACGATAATGCATTCTAA 58.973 36.000 16.86 0.00 33.27 2.10
3878 3929 5.353956 AGCACAAACACGATAATGCATTCTA 59.646 36.000 16.86 0.00 35.51 2.10
3879 3930 4.156556 AGCACAAACACGATAATGCATTCT 59.843 37.500 16.86 6.03 35.51 2.40
3880 3931 4.414852 AGCACAAACACGATAATGCATTC 58.585 39.130 16.86 1.10 35.51 2.67
3881 3932 4.439305 AGCACAAACACGATAATGCATT 57.561 36.364 17.56 17.56 35.51 3.56
3882 3933 4.082841 TGAAGCACAAACACGATAATGCAT 60.083 37.500 0.00 0.00 35.51 3.96
3883 3934 3.251972 TGAAGCACAAACACGATAATGCA 59.748 39.130 0.00 0.00 35.51 3.96
3884 3935 3.820689 TGAAGCACAAACACGATAATGC 58.179 40.909 0.00 0.00 0.00 3.56
3885 3936 5.393124 ACATGAAGCACAAACACGATAATG 58.607 37.500 0.00 0.00 0.00 1.90
3889 3945 2.877786 TGACATGAAGCACAAACACGAT 59.122 40.909 0.00 0.00 0.00 3.73
3923 3979 2.296471 AGGTAAATGCGAGGGACGATAG 59.704 50.000 0.00 0.00 45.77 2.08
3924 3980 2.295349 GAGGTAAATGCGAGGGACGATA 59.705 50.000 0.00 0.00 45.77 2.92
3925 3981 1.068741 GAGGTAAATGCGAGGGACGAT 59.931 52.381 0.00 0.00 45.77 3.73
3926 3982 0.458669 GAGGTAAATGCGAGGGACGA 59.541 55.000 0.00 0.00 45.77 4.20
3927 3983 0.870307 CGAGGTAAATGCGAGGGACG 60.870 60.000 0.00 0.00 45.66 4.79
3928 3984 1.152383 GCGAGGTAAATGCGAGGGAC 61.152 60.000 0.00 0.00 0.00 4.46
3929 3985 1.143183 GCGAGGTAAATGCGAGGGA 59.857 57.895 0.00 0.00 0.00 4.20
3930 3986 0.742990 TTGCGAGGTAAATGCGAGGG 60.743 55.000 0.00 0.00 0.00 4.30
3931 3987 1.083489 TTTGCGAGGTAAATGCGAGG 58.917 50.000 0.00 0.00 0.00 4.63
3932 3988 2.892373 TTTTGCGAGGTAAATGCGAG 57.108 45.000 0.00 0.00 0.00 5.03
3933 3989 2.159448 CCATTTTGCGAGGTAAATGCGA 60.159 45.455 0.00 0.00 39.34 5.10
3934 3990 2.184448 CCATTTTGCGAGGTAAATGCG 58.816 47.619 0.00 0.00 39.34 4.73
3935 3991 2.094234 ACCCATTTTGCGAGGTAAATGC 60.094 45.455 0.00 0.00 39.34 3.56
3936 3992 3.056891 ACACCCATTTTGCGAGGTAAATG 60.057 43.478 0.00 0.00 40.01 2.32
3937 3993 3.161866 ACACCCATTTTGCGAGGTAAAT 58.838 40.909 0.00 0.00 0.00 1.40
3938 3994 2.588620 ACACCCATTTTGCGAGGTAAA 58.411 42.857 0.00 0.00 0.00 2.01
3939 3995 2.279935 ACACCCATTTTGCGAGGTAA 57.720 45.000 0.00 0.00 0.00 2.85
3940 3996 2.279935 AACACCCATTTTGCGAGGTA 57.720 45.000 0.00 0.00 0.00 3.08
3941 3997 1.068434 CAAACACCCATTTTGCGAGGT 59.932 47.619 0.00 0.00 0.00 3.85
3942 3998 1.068434 ACAAACACCCATTTTGCGAGG 59.932 47.619 0.00 0.00 37.45 4.63
3943 3999 2.507339 ACAAACACCCATTTTGCGAG 57.493 45.000 0.00 0.00 37.45 5.03
3944 4000 2.688446 TGTACAAACACCCATTTTGCGA 59.312 40.909 0.00 0.00 37.45 5.10
3945 4001 3.085443 TGTACAAACACCCATTTTGCG 57.915 42.857 0.00 0.00 37.45 4.85
3946 4002 4.447389 GTCATGTACAAACACCCATTTTGC 59.553 41.667 0.00 0.00 38.78 3.68
3947 4003 5.595885 TGTCATGTACAAACACCCATTTTG 58.404 37.500 0.00 0.00 38.78 2.44
3948 4004 5.860941 TGTCATGTACAAACACCCATTTT 57.139 34.783 0.00 0.00 38.78 1.82
3949 4005 5.774690 AGATGTCATGTACAAACACCCATTT 59.225 36.000 14.55 1.11 42.70 2.32
3950 4006 5.324409 AGATGTCATGTACAAACACCCATT 58.676 37.500 14.55 1.71 42.70 3.16
3951 4007 4.922206 AGATGTCATGTACAAACACCCAT 58.078 39.130 14.55 5.39 42.70 4.00
3952 4008 4.365514 AGATGTCATGTACAAACACCCA 57.634 40.909 14.55 1.18 42.70 4.51
3953 4009 7.391148 AATAAGATGTCATGTACAAACACCC 57.609 36.000 14.55 10.52 42.70 4.61
3954 4010 8.395633 GGTAATAAGATGTCATGTACAAACACC 58.604 37.037 14.55 7.19 42.70 4.16
3955 4011 8.941977 TGGTAATAAGATGTCATGTACAAACAC 58.058 33.333 14.55 6.05 42.70 3.32
3956 4012 8.941977 GTGGTAATAAGATGTCATGTACAAACA 58.058 33.333 14.59 14.59 42.70 2.83
3957 4013 8.395633 GGTGGTAATAAGATGTCATGTACAAAC 58.604 37.037 0.00 1.95 42.70 2.93
3958 4014 7.554835 GGGTGGTAATAAGATGTCATGTACAAA 59.445 37.037 0.00 0.00 42.70 2.83
3959 4015 7.051623 GGGTGGTAATAAGATGTCATGTACAA 58.948 38.462 0.00 0.00 42.70 2.41
3960 4016 6.157123 TGGGTGGTAATAAGATGTCATGTACA 59.843 38.462 0.00 0.00 43.86 2.90
3961 4017 6.588204 TGGGTGGTAATAAGATGTCATGTAC 58.412 40.000 0.00 0.00 0.00 2.90
3962 4018 6.816616 TGGGTGGTAATAAGATGTCATGTA 57.183 37.500 0.00 0.00 0.00 2.29
3963 4019 5.708736 TGGGTGGTAATAAGATGTCATGT 57.291 39.130 0.00 0.00 0.00 3.21
3964 4020 7.403312 TTTTGGGTGGTAATAAGATGTCATG 57.597 36.000 0.00 0.00 0.00 3.07
3965 4021 7.838696 TCATTTTGGGTGGTAATAAGATGTCAT 59.161 33.333 0.00 0.00 0.00 3.06
3966 4022 7.178573 TCATTTTGGGTGGTAATAAGATGTCA 58.821 34.615 0.00 0.00 0.00 3.58
3967 4023 7.639113 TCATTTTGGGTGGTAATAAGATGTC 57.361 36.000 0.00 0.00 0.00 3.06
3968 4024 9.881773 ATATCATTTTGGGTGGTAATAAGATGT 57.118 29.630 0.00 0.00 0.00 3.06
3970 4026 9.881773 ACATATCATTTTGGGTGGTAATAAGAT 57.118 29.630 0.00 0.00 0.00 2.40
3971 4027 9.707957 AACATATCATTTTGGGTGGTAATAAGA 57.292 29.630 0.00 0.00 0.00 2.10
3975 4031 9.707957 TCTTAACATATCATTTTGGGTGGTAAT 57.292 29.630 0.00 0.00 0.00 1.89
3976 4032 9.184523 CTCTTAACATATCATTTTGGGTGGTAA 57.815 33.333 0.00 0.00 0.00 2.85
3977 4033 8.333235 ACTCTTAACATATCATTTTGGGTGGTA 58.667 33.333 0.00 0.00 0.00 3.25
3978 4034 7.182060 ACTCTTAACATATCATTTTGGGTGGT 58.818 34.615 0.00 0.00 0.00 4.16
3979 4035 7.645058 ACTCTTAACATATCATTTTGGGTGG 57.355 36.000 0.00 0.00 0.00 4.61
3990 4046 9.937175 GGCTGTTGAAAATACTCTTAACATATC 57.063 33.333 0.00 0.00 0.00 1.63
3991 4047 8.612619 CGGCTGTTGAAAATACTCTTAACATAT 58.387 33.333 0.00 0.00 0.00 1.78
3992 4048 7.604927 ACGGCTGTTGAAAATACTCTTAACATA 59.395 33.333 0.00 0.00 0.00 2.29
3993 4049 6.430000 ACGGCTGTTGAAAATACTCTTAACAT 59.570 34.615 0.00 0.00 0.00 2.71
3994 4050 5.761234 ACGGCTGTTGAAAATACTCTTAACA 59.239 36.000 0.00 0.00 0.00 2.41
3995 4051 6.237313 ACGGCTGTTGAAAATACTCTTAAC 57.763 37.500 0.00 0.00 0.00 2.01
3996 4052 5.410439 GGACGGCTGTTGAAAATACTCTTAA 59.590 40.000 0.00 0.00 0.00 1.85
4006 4062 0.736053 GTGTTGGACGGCTGTTGAAA 59.264 50.000 0.00 0.00 0.00 2.69
4090 4147 3.807631 TTTGCTGCGTCGCTGGAGT 62.808 57.895 23.15 0.00 0.00 3.85
4099 4156 1.065031 CGCGCTAAAATTTGCTGCGT 61.065 50.000 23.59 0.10 46.94 5.24
4122 4180 2.581354 CGCCTGCAGGAGCTACTT 59.419 61.111 37.21 0.00 42.74 2.24
4141 4199 3.845625 GCACGCACTGCTTTTTAGT 57.154 47.368 0.00 0.00 43.33 2.24
4251 4315 9.681692 TGAACTTTTTATGTCATCATGAACTTG 57.318 29.630 0.00 0.00 35.70 3.16
4254 4318 9.630098 ACATGAACTTTTTATGTCATCATGAAC 57.370 29.630 16.96 0.00 43.18 3.18
4255 4319 9.844790 GACATGAACTTTTTATGTCATCATGAA 57.155 29.630 16.96 0.00 46.12 2.57
4268 4335 9.665719 ATTTAAACTTGTGGACATGAACTTTTT 57.334 25.926 0.00 0.00 0.00 1.94
4280 4347 4.590647 TGGGCATGAATTTAAACTTGTGGA 59.409 37.500 0.00 0.00 0.00 4.02
4416 4489 1.912043 GGGGAGGATGATGAATCGGAT 59.088 52.381 0.00 0.00 35.99 4.18
4457 4533 2.390599 GCGCACGGCAATGAAGAGA 61.391 57.895 0.30 0.00 42.87 3.10
4489 4568 0.250295 TCCAACACCTTCCGAGCTTG 60.250 55.000 0.00 0.00 0.00 4.01
4508 4587 3.181493 GCATGATGCCGTTGAAGATCTTT 60.181 43.478 9.87 0.00 37.42 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.