Multiple sequence alignment - TraesCS1D01G050500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G050500 chr1D 100.000 2968 0 0 1 2968 30663735 30666702 0.000000e+00 5481
1 TraesCS1D01G050500 chr1D 93.543 1905 71 6 1090 2968 30373075 30374953 0.000000e+00 2789
2 TraesCS1D01G050500 chr1D 84.244 1117 158 14 1303 2410 30373513 30374620 0.000000e+00 1072
3 TraesCS1D01G050500 chr1D 85.175 1059 142 10 1553 2603 30665037 30666088 0.000000e+00 1072
4 TraesCS1D01G050500 chr1D 85.175 1059 142 10 1303 2354 30665287 30666337 0.000000e+00 1072
5 TraesCS1D01G050500 chr1D 81.408 1307 228 11 1304 2599 30565163 30566465 0.000000e+00 1053
6 TraesCS1D01G050500 chr1D 86.159 932 113 9 1681 2603 30373391 30374315 0.000000e+00 992
7 TraesCS1D01G050500 chr1D 79.757 1319 242 18 1303 2603 30647529 30648840 0.000000e+00 933
8 TraesCS1D01G050500 chr1D 79.227 1319 249 18 1303 2603 30649785 30651096 0.000000e+00 894
9 TraesCS1D01G050500 chr1D 86.441 708 45 22 185 858 31234703 31235393 0.000000e+00 728
10 TraesCS1D01G050500 chr1D 83.826 575 83 1 722 1286 30264879 30265453 3.370000e-149 538
11 TraesCS1D01G050500 chr1D 82.939 592 85 10 677 1254 30642379 30642968 1.220000e-143 520
12 TraesCS1D01G050500 chr1D 79.733 750 119 14 2238 2955 31059459 31060207 2.040000e-141 512
13 TraesCS1D01G050500 chr1D 81.618 544 87 8 752 1286 30537373 30537912 3.510000e-119 438
14 TraesCS1D01G050500 chr1D 81.513 595 44 25 117 692 30422653 30423200 2.110000e-116 429
15 TraesCS1D01G050500 chr1D 90.367 218 16 4 589 804 30264553 30264767 6.260000e-72 281
16 TraesCS1D01G050500 chr1D 80.636 346 45 8 731 1054 30294230 30294575 6.350000e-62 248
17 TraesCS1D01G050500 chr1D 80.936 299 48 6 2593 2887 31352634 31352927 8.280000e-56 228
18 TraesCS1D01G050500 chr1D 82.383 193 27 5 2669 2856 30374864 30375054 8.510000e-36 161
19 TraesCS1D01G050500 chr1D 92.793 111 8 0 2849 2959 30651899 30652009 8.510000e-36 161
20 TraesCS1D01G050500 chr1B 81.401 1328 226 17 1288 2601 48931580 48932900 0.000000e+00 1064
21 TraesCS1D01G050500 chr1B 79.843 1017 157 18 1990 2968 49674922 49675928 0.000000e+00 699
22 TraesCS1D01G050500 chr1B 82.130 817 143 3 1291 2106 48932084 48932898 0.000000e+00 697
23 TraesCS1D01G050500 chr1B 80.401 648 103 17 657 1286 49674398 49675039 3.460000e-129 472
24 TraesCS1D01G050500 chr1B 83.529 510 76 6 778 1286 49633834 49634336 1.250000e-128 470
25 TraesCS1D01G050500 chr1B 83.333 480 64 12 812 1284 49144951 49145421 2.110000e-116 429
26 TraesCS1D01G050500 chr1B 79.299 599 94 16 2385 2955 49642144 49642740 2.770000e-105 392
27 TraesCS1D01G050500 chr1B 92.058 277 19 2 2694 2967 49096676 49096952 1.290000e-103 387
28 TraesCS1D01G050500 chr1B 81.696 448 65 11 813 1247 48931168 48931611 1.010000e-94 357
29 TraesCS1D01G050500 chr1B 85.015 327 45 2 677 1000 48930821 48931146 2.210000e-86 329
30 TraesCS1D01G050500 chr1B 78.178 527 102 11 1297 1819 49604148 49604665 1.030000e-84 324
31 TraesCS1D01G050500 chr1B 97.115 104 3 0 2856 2959 48932964 48933067 3.040000e-40 176
32 TraesCS1D01G050500 chr1B 96.154 104 4 0 2856 2959 48981966 48982069 1.410000e-38 171
33 TraesCS1D01G050500 chr1B 96.078 102 4 0 2856 2957 48997126 48997227 1.830000e-37 167
34 TraesCS1D01G050500 chr1A 77.628 666 94 36 173 804 30570990 30571634 1.310000e-93 353
35 TraesCS1D01G050500 chr1A 78.487 595 89 13 722 1286 30571746 30572331 1.310000e-93 353
36 TraesCS1D01G050500 chr1A 80.132 302 50 6 2593 2888 30771390 30771687 1.790000e-52 217
37 TraesCS1D01G050500 chr5A 93.878 49 3 0 1 49 471684036 471683988 1.140000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G050500 chr1D 30663735 30666702 2967 False 2541.666667 5481 90.116667 1 2968 3 chr1D.!!$F12 2967
1 TraesCS1D01G050500 chr1D 30373075 30375054 1979 False 1253.500000 2789 86.582250 1090 2968 4 chr1D.!!$F10 1878
2 TraesCS1D01G050500 chr1D 30565163 30566465 1302 False 1053.000000 1053 81.408000 1304 2599 1 chr1D.!!$F4 1295
3 TraesCS1D01G050500 chr1D 31234703 31235393 690 False 728.000000 728 86.441000 185 858 1 chr1D.!!$F7 673
4 TraesCS1D01G050500 chr1D 30647529 30652009 4480 False 662.666667 933 83.925667 1303 2959 3 chr1D.!!$F11 1656
5 TraesCS1D01G050500 chr1D 30642379 30642968 589 False 520.000000 520 82.939000 677 1254 1 chr1D.!!$F5 577
6 TraesCS1D01G050500 chr1D 31059459 31060207 748 False 512.000000 512 79.733000 2238 2955 1 chr1D.!!$F6 717
7 TraesCS1D01G050500 chr1D 30537373 30537912 539 False 438.000000 438 81.618000 752 1286 1 chr1D.!!$F3 534
8 TraesCS1D01G050500 chr1D 30422653 30423200 547 False 429.000000 429 81.513000 117 692 1 chr1D.!!$F2 575
9 TraesCS1D01G050500 chr1D 30264553 30265453 900 False 409.500000 538 87.096500 589 1286 2 chr1D.!!$F9 697
10 TraesCS1D01G050500 chr1B 49674398 49675928 1530 False 585.500000 699 80.122000 657 2968 2 chr1B.!!$F9 2311
11 TraesCS1D01G050500 chr1B 48930821 48933067 2246 False 524.600000 1064 85.471400 677 2959 5 chr1B.!!$F8 2282
12 TraesCS1D01G050500 chr1B 49633834 49634336 502 False 470.000000 470 83.529000 778 1286 1 chr1B.!!$F6 508
13 TraesCS1D01G050500 chr1B 49642144 49642740 596 False 392.000000 392 79.299000 2385 2955 1 chr1B.!!$F7 570
14 TraesCS1D01G050500 chr1B 49604148 49604665 517 False 324.000000 324 78.178000 1297 1819 1 chr1B.!!$F5 522
15 TraesCS1D01G050500 chr1A 30570990 30572331 1341 False 353.000000 353 78.057500 173 1286 2 chr1A.!!$F2 1113

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 668 0.10412 TGCGGTCAGTCAATATCCGG 59.896 55.0 0.0 0.0 41.24 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 5160 0.038744 ACAAGATGGGGCAAGTCTGG 59.961 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.939201 TTTCTAAAAACTTGATCAAACATGCA 57.061 26.923 9.88 0.00 0.00 3.96
32 33 7.928908 TCTAAAAACTTGATCAAACATGCAC 57.071 32.000 9.88 0.00 0.00 4.57
33 34 7.487484 TCTAAAAACTTGATCAAACATGCACA 58.513 30.769 9.88 0.00 0.00 4.57
36 37 7.556733 AAAACTTGATCAAACATGCACAAAT 57.443 28.000 9.88 0.00 0.00 2.32
37 38 7.556733 AAACTTGATCAAACATGCACAAATT 57.443 28.000 9.88 0.00 0.00 1.82
39 40 6.950545 ACTTGATCAAACATGCACAAATTTG 58.049 32.000 16.67 16.67 34.11 2.32
40 41 6.762187 ACTTGATCAAACATGCACAAATTTGA 59.238 30.769 24.64 14.99 43.23 2.69
41 42 6.528014 TGATCAAACATGCACAAATTTGAC 57.472 33.333 24.64 15.54 42.22 3.18
42 43 6.282167 TGATCAAACATGCACAAATTTGACT 58.718 32.000 24.64 0.00 42.22 3.41
44 45 6.981762 TCAAACATGCACAAATTTGACTTT 57.018 29.167 24.64 9.62 36.42 2.66
45 46 7.375106 TCAAACATGCACAAATTTGACTTTT 57.625 28.000 24.64 10.91 36.42 2.27
46 47 7.242079 TCAAACATGCACAAATTTGACTTTTG 58.758 30.769 24.64 19.61 36.42 2.44
47 48 6.981762 AACATGCACAAATTTGACTTTTGA 57.018 29.167 24.64 3.44 37.48 2.69
48 49 6.981762 ACATGCACAAATTTGACTTTTGAA 57.018 29.167 24.64 7.01 37.48 2.69
50 51 7.987649 ACATGCACAAATTTGACTTTTGAATT 58.012 26.923 24.64 0.00 37.48 2.17
52 53 9.291664 CATGCACAAATTTGACTTTTGAATTTT 57.708 25.926 24.64 0.00 37.48 1.82
136 137 8.403236 AGTGGTTATTTATTTTCTATGGCGTTC 58.597 33.333 0.00 0.00 0.00 3.95
180 189 0.551131 ATGGGACCCTCAAAGCTCCT 60.551 55.000 13.00 0.00 0.00 3.69
208 217 0.531532 CAGGTCCCAGATGTCATCGC 60.532 60.000 7.18 0.00 0.00 4.58
225 235 4.876107 TCATCGCCATCTTACCTTTTTCTC 59.124 41.667 0.00 0.00 0.00 2.87
236 246 2.110188 ACCTTTTTCTCCTTCCCCTTCC 59.890 50.000 0.00 0.00 0.00 3.46
371 408 0.251165 AGCTCTCTCTATCGGCTCCC 60.251 60.000 0.00 0.00 0.00 4.30
421 470 4.436998 GCAGGTAGCACCGCGACT 62.437 66.667 8.23 4.33 44.90 4.18
422 471 2.202623 CAGGTAGCACCGCGACTC 60.203 66.667 8.23 0.00 44.90 3.36
423 472 3.450115 AGGTAGCACCGCGACTCC 61.450 66.667 8.23 5.98 44.90 3.85
424 473 4.849329 GGTAGCACCGCGACTCCG 62.849 72.222 8.23 0.00 34.70 4.63
455 512 3.365220 CGTCTTCCTCGAATTCAGTCAAC 59.635 47.826 6.22 0.00 0.00 3.18
468 525 5.499139 TTCAGTCAACTCGCATTCTTTTT 57.501 34.783 0.00 0.00 0.00 1.94
469 526 6.612247 TTCAGTCAACTCGCATTCTTTTTA 57.388 33.333 0.00 0.00 0.00 1.52
475 532 9.612620 AGTCAACTCGCATTCTTTTTAAATAAG 57.387 29.630 0.00 0.00 0.00 1.73
518 667 1.593006 GTTGCGGTCAGTCAATATCCG 59.407 52.381 0.00 0.00 43.37 4.18
519 668 0.104120 TGCGGTCAGTCAATATCCGG 59.896 55.000 0.00 0.00 41.24 5.14
520 669 1.222115 GCGGTCAGTCAATATCCGGC 61.222 60.000 0.00 0.00 41.24 6.13
521 670 0.600255 CGGTCAGTCAATATCCGGCC 60.600 60.000 0.00 0.00 37.92 6.13
522 671 0.468226 GGTCAGTCAATATCCGGCCA 59.532 55.000 2.24 0.00 0.00 5.36
523 672 1.072331 GGTCAGTCAATATCCGGCCAT 59.928 52.381 2.24 0.00 0.00 4.40
605 776 4.139420 CTCGTTTCTGCAGCGCCG 62.139 66.667 9.47 10.47 0.00 6.46
623 794 1.604755 CCGGTCTCTATTCAGGACTCG 59.395 57.143 0.00 0.00 0.00 4.18
680 853 2.245096 GTTCAATGACGCATGCTTGTC 58.755 47.619 17.13 16.59 35.67 3.18
710 883 2.902705 TGTTAGAAGGTCTTGCACGT 57.097 45.000 0.00 0.00 0.00 4.49
762 1133 1.447838 AAGCATGGTCTACACGGCG 60.448 57.895 4.80 4.80 37.68 6.46
786 1159 2.035066 CCTGGCAGTCACTTTCTTTTGG 59.965 50.000 14.43 0.00 0.00 3.28
882 1483 0.326264 TGAGCCTTCTCCTTGCCTTC 59.674 55.000 0.00 0.00 38.58 3.46
920 1729 0.465287 CTTGCCTTGCCACACCTTTT 59.535 50.000 0.00 0.00 0.00 2.27
942 1763 5.437289 TTTGTGCCTCAAATTCTACACAG 57.563 39.130 0.00 0.00 40.56 3.66
943 1764 4.350368 TGTGCCTCAAATTCTACACAGA 57.650 40.909 0.00 0.00 33.41 3.41
957 1778 2.276116 ACAGACGCCACTGGATCGT 61.276 57.895 0.00 0.00 41.59 3.73
981 1802 1.339438 GCAGAGGCACTTCTCCAATGA 60.339 52.381 0.00 0.00 41.55 2.57
1001 1822 8.206189 CCAATGAAAATCTGGCCTAAACAATAT 58.794 33.333 3.32 0.00 0.00 1.28
1006 1830 4.853468 TCTGGCCTAAACAATATGTCCA 57.147 40.909 3.32 0.00 0.00 4.02
1012 1836 6.265196 TGGCCTAAACAATATGTCCAATGATC 59.735 38.462 3.32 0.00 0.00 2.92
1013 1837 6.373779 GCCTAAACAATATGTCCAATGATCG 58.626 40.000 0.00 0.00 0.00 3.69
1056 1883 2.078452 CAACCCCTGTGACTGGGAT 58.922 57.895 26.94 9.13 45.28 3.85
1065 1892 2.359850 GACTGGGATGGCGTTGCA 60.360 61.111 0.00 0.00 0.00 4.08
1068 1895 2.035469 TGGGATGGCGTTGCATGT 59.965 55.556 0.00 0.00 0.00 3.21
1148 1979 2.763627 ATTTCGCTTGCGGGGTTTGC 62.764 55.000 15.10 0.00 0.00 3.68
1180 2583 5.695851 CATGTTAGACAGGCTTCACTTTT 57.304 39.130 0.00 0.00 0.00 2.27
1200 2603 2.449464 TCAGATTTGCCCCATCTTGTG 58.551 47.619 0.00 0.00 0.00 3.33
1264 2667 0.681175 AAACATTGGTGCTCTTGCCC 59.319 50.000 0.00 0.00 38.71 5.36
1286 2689 4.370049 CAGCTCACTCACTTGGATCTATG 58.630 47.826 0.00 0.00 0.00 2.23
1287 2690 4.029520 AGCTCACTCACTTGGATCTATGT 58.970 43.478 0.00 0.00 0.00 2.29
1288 2691 4.469227 AGCTCACTCACTTGGATCTATGTT 59.531 41.667 0.00 0.00 0.00 2.71
1289 2692 4.569966 GCTCACTCACTTGGATCTATGTTG 59.430 45.833 0.00 0.00 0.00 3.33
1290 2693 4.507710 TCACTCACTTGGATCTATGTTGC 58.492 43.478 0.00 0.00 0.00 4.17
1291 2694 4.020307 TCACTCACTTGGATCTATGTTGCA 60.020 41.667 0.00 0.00 0.00 4.08
1292 2695 4.331992 CACTCACTTGGATCTATGTTGCAG 59.668 45.833 0.00 0.00 0.00 4.41
1293 2696 3.273434 TCACTTGGATCTATGTTGCAGC 58.727 45.455 0.00 0.00 0.00 5.25
1294 2697 3.011818 CACTTGGATCTATGTTGCAGCA 58.988 45.455 5.46 5.46 0.00 4.41
1295 2698 3.630769 CACTTGGATCTATGTTGCAGCAT 59.369 43.478 20.30 20.30 0.00 3.79
1296 2699 4.097437 CACTTGGATCTATGTTGCAGCATT 59.903 41.667 21.61 3.43 0.00 3.56
1297 2700 4.337555 ACTTGGATCTATGTTGCAGCATTC 59.662 41.667 21.61 12.65 0.00 2.67
1298 2701 4.160642 TGGATCTATGTTGCAGCATTCT 57.839 40.909 21.61 6.62 0.00 2.40
1299 2702 4.132336 TGGATCTATGTTGCAGCATTCTC 58.868 43.478 21.61 14.38 0.00 2.87
1300 2703 3.501445 GGATCTATGTTGCAGCATTCTCC 59.499 47.826 21.61 18.74 0.00 3.71
1301 2704 2.554142 TCTATGTTGCAGCATTCTCCG 58.446 47.619 21.61 5.88 0.00 4.63
1302 2705 1.600957 CTATGTTGCAGCATTCTCCGG 59.399 52.381 21.61 0.00 0.00 5.14
1306 2709 4.496336 GCAGCATTCTCCGGGGCT 62.496 66.667 0.00 0.12 36.99 5.19
1342 2745 1.376466 GGTGCTCTTTCCCAGCTCA 59.624 57.895 0.00 0.00 37.79 4.26
1344 2747 0.036022 GTGCTCTTTCCCAGCTCACT 59.964 55.000 0.00 0.00 37.79 3.41
1345 2748 0.322975 TGCTCTTTCCCAGCTCACTC 59.677 55.000 0.00 0.00 37.79 3.51
1461 3117 5.010012 CAGTTTGTTTCTTCCATGCCTAGTT 59.990 40.000 0.00 0.00 0.00 2.24
1466 3122 4.640771 TTCTTCCATGCCTAGTTCAGTT 57.359 40.909 0.00 0.00 0.00 3.16
1492 3397 3.134458 GACTAGGGAATTTGATGAGCCG 58.866 50.000 0.00 0.00 0.00 5.52
1507 3412 2.042831 GCCGCTCCACTTTGCAGAT 61.043 57.895 0.00 0.00 0.00 2.90
1523 3428 3.015327 GCAGATTTGCCTCATCTTGTCT 58.985 45.455 0.00 0.00 44.74 3.41
1526 3431 5.298777 GCAGATTTGCCTCATCTTGTCTATT 59.701 40.000 0.00 0.00 44.74 1.73
1528 3433 7.194278 CAGATTTGCCTCATCTTGTCTATTTG 58.806 38.462 0.00 0.00 0.00 2.32
1529 3434 7.066645 CAGATTTGCCTCATCTTGTCTATTTGA 59.933 37.037 0.00 0.00 0.00 2.69
1534 3439 5.649831 GCCTCATCTTGTCTATTTGAACCTT 59.350 40.000 0.00 0.00 0.00 3.50
1620 3525 1.207089 GGATCTGTCCATCAACGACCA 59.793 52.381 0.00 0.00 44.42 4.02
1641 4049 3.134804 CAGAACGGATCTATCCCACCTTT 59.865 47.826 3.39 0.00 44.24 3.11
1648 4056 4.323868 GGATCTATCCCACCTTTCATAGGC 60.324 50.000 0.00 0.00 43.55 3.93
1697 4605 9.706691 TCGATCTCTCTTACTACAATTTGTTTT 57.293 29.630 7.45 0.00 0.00 2.43
1806 4714 1.588139 GATAACCACGTCTCGGGCG 60.588 63.158 0.00 0.00 0.00 6.13
1838 4746 2.044946 ATTGGGGCTCTTGCGGAC 60.045 61.111 0.00 0.00 40.82 4.79
1975 4883 6.550108 CCATGCCTAGTAAAGTAGGAAGACTA 59.450 42.308 13.99 0.00 42.18 2.59
2005 4913 3.958147 TGATGAGCATCTCCATTTTGCAT 59.042 39.130 11.37 0.00 38.84 3.96
2037 4945 3.170717 TCTTGTCTATTTGGACCTCGGT 58.829 45.455 0.00 0.00 35.54 4.69
2038 4946 3.194968 TCTTGTCTATTTGGACCTCGGTC 59.805 47.826 7.57 7.57 43.87 4.79
2044 4952 0.834612 TTTGGACCTCGGTCACAACT 59.165 50.000 17.21 0.00 46.20 3.16
2052 4960 1.129624 CTCGGTCACAACTCTCTCTCG 59.870 57.143 0.00 0.00 0.00 4.04
2074 4982 4.876369 GGGCCTAATCCCATCAAGCATTG 61.876 52.174 0.84 0.00 46.37 2.82
2095 5003 2.154462 GCACTCTAGCCAAGCTTGAAA 58.846 47.619 28.05 11.14 39.54 2.69
2098 5006 3.817647 CACTCTAGCCAAGCTTGAAAACT 59.182 43.478 28.05 19.29 39.54 2.66
2109 5017 3.823304 AGCTTGAAAACTTGGATCTGTCC 59.177 43.478 0.00 0.00 45.31 4.02
2118 5026 2.695314 GGATCTGTCCGGCAATGAC 58.305 57.895 0.00 0.00 34.13 3.06
2121 5029 0.107508 ATCTGTCCGGCAATGACCTG 60.108 55.000 0.00 0.00 31.60 4.00
2122 5030 1.191489 TCTGTCCGGCAATGACCTGA 61.191 55.000 0.00 0.00 31.60 3.86
2124 5032 0.605319 TGTCCGGCAATGACCTGAAC 60.605 55.000 0.00 0.00 31.60 3.18
2128 5036 0.744414 CGGCAATGACCTGAACGGAT 60.744 55.000 0.00 0.00 36.31 4.18
2130 5038 1.407437 GGCAATGACCTGAACGGATCT 60.407 52.381 0.00 0.00 36.31 2.75
2141 5049 4.310769 CTGAACGGATCTATCCCAACATC 58.689 47.826 3.39 0.00 44.24 3.06
2163 5071 9.054580 ACATCCCTAGGTAATTGTACTAAACTT 57.945 33.333 8.29 0.00 0.00 2.66
2172 5080 9.322773 GGTAATTGTACTAAACTTACCTCCATC 57.677 37.037 9.66 0.00 38.72 3.51
2180 5088 5.941555 AAACTTACCTCCATCGATCTCTT 57.058 39.130 0.00 0.00 0.00 2.85
2190 5098 7.070074 ACCTCCATCGATCTCTTTTACTACAAT 59.930 37.037 0.00 0.00 0.00 2.71
2208 5116 7.630082 ACTACAATTTTTCTCTACCATGGCTA 58.370 34.615 13.04 2.70 0.00 3.93
2212 5120 7.553044 ACAATTTTTCTCTACCATGGCTAGTAC 59.447 37.037 13.04 0.00 0.00 2.73
2217 5125 6.009908 TCTCTACCATGGCTAGTACAGTAA 57.990 41.667 13.04 0.00 0.00 2.24
2219 5127 5.138276 TCTACCATGGCTAGTACAGTAAGG 58.862 45.833 13.04 0.00 0.00 2.69
2221 5129 3.705072 ACCATGGCTAGTACAGTAAGGAC 59.295 47.826 13.04 0.00 0.00 3.85
2228 5142 6.377996 TGGCTAGTACAGTAAGGACGAATTTA 59.622 38.462 0.00 0.00 0.00 1.40
2246 5160 6.457528 CGAATTTAATGAGCCTCTCCACTTTC 60.458 42.308 0.00 0.00 0.00 2.62
2257 5171 0.110486 TCCACTTTCCAGACTTGCCC 59.890 55.000 0.00 0.00 0.00 5.36
2267 5181 1.067295 AGACTTGCCCCATCTTGTCA 58.933 50.000 0.00 0.00 0.00 3.58
2270 5184 2.827921 GACTTGCCCCATCTTGTCAATT 59.172 45.455 0.00 0.00 0.00 2.32
2279 5193 3.181503 CCATCTTGTCAATTTGGAGCTCG 60.182 47.826 7.83 0.00 0.00 5.03
2284 5198 3.950397 TGTCAATTTGGAGCTCGGTTAT 58.050 40.909 7.83 0.00 0.00 1.89
2286 5200 5.116180 TGTCAATTTGGAGCTCGGTTATAG 58.884 41.667 7.83 0.00 0.00 1.31
2366 8038 1.191535 TCTGTCCGGTAATGACCTGG 58.808 55.000 0.00 0.69 44.46 4.45
2367 8039 0.462047 CTGTCCGGTAATGACCTGGC 60.462 60.000 0.00 0.00 44.46 4.85
2375 8047 0.758734 TAATGACCTGGCCGGATCTG 59.241 55.000 15.09 0.00 36.31 2.90
2383 8055 2.668632 GCCGGATCTGTCCCAACA 59.331 61.111 5.05 0.00 41.83 3.33
2417 8090 4.644103 TGTACTAACTAACCTCCATCGC 57.356 45.455 0.00 0.00 0.00 4.58
2418 8091 3.382546 TGTACTAACTAACCTCCATCGCC 59.617 47.826 0.00 0.00 0.00 5.54
2423 8096 1.123928 CTAACCTCCATCGCCCTCTT 58.876 55.000 0.00 0.00 0.00 2.85
2457 8130 5.748670 TGTTTCTACCATGCCTAGTACAA 57.251 39.130 0.00 0.00 0.00 2.41
2464 8137 5.552870 ACCATGCCTAGTACAATAGGAAG 57.447 43.478 11.46 1.73 44.50 3.46
2466 8139 5.305644 ACCATGCCTAGTACAATAGGAAGAG 59.694 44.000 11.46 1.00 44.50 2.85
2477 8150 8.487028 AGTACAATAGGAAGAGTAGGGAATTTG 58.513 37.037 0.00 0.00 0.00 2.32
2482 8155 5.995446 AGGAAGAGTAGGGAATTTGATGAC 58.005 41.667 0.00 0.00 0.00 3.06
2522 8198 2.763039 TGCCCCATCTTGTCTATCTGA 58.237 47.619 0.00 0.00 0.00 3.27
2527 8203 4.164988 CCCCATCTTGTCTATCTGAACCTT 59.835 45.833 0.00 0.00 0.00 3.50
2533 8209 7.496346 TCTTGTCTATCTGAACCTTGGTAAT 57.504 36.000 0.00 0.00 0.00 1.89
2537 8213 7.562135 TGTCTATCTGAACCTTGGTAATAACC 58.438 38.462 0.00 0.00 46.98 2.85
2538 8214 7.402071 TGTCTATCTGAACCTTGGTAATAACCT 59.598 37.037 0.00 0.00 46.91 3.50
2545 8221 6.271391 TGAACCTTGGTAATAACCTTCTCTCA 59.729 38.462 0.00 0.00 46.91 3.27
2547 8223 5.785940 ACCTTGGTAATAACCTTCTCTCAGT 59.214 40.000 0.00 0.00 46.91 3.41
2550 8226 4.401519 TGGTAATAACCTTCTCTCAGTCGG 59.598 45.833 0.00 0.00 46.91 4.79
2556 8232 2.291930 ACCTTCTCTCAGTCGGAATCCT 60.292 50.000 0.00 0.00 0.00 3.24
2567 8243 4.818546 CAGTCGGAATCCTATCAAGCATTT 59.181 41.667 0.00 0.00 0.00 2.32
2569 8245 4.576463 GTCGGAATCCTATCAAGCATTTGT 59.424 41.667 0.00 0.00 35.73 2.83
2575 8251 4.194640 TCCTATCAAGCATTTGTGCTCTC 58.805 43.478 3.10 0.00 45.54 3.20
2582 8258 0.877071 CATTTGTGCTCTCGCCAAGT 59.123 50.000 0.00 0.00 34.43 3.16
2586 8262 1.301716 GTGCTCTCGCCAAGTTGGA 60.302 57.895 26.52 4.48 40.96 3.53
2587 8263 0.884704 GTGCTCTCGCCAAGTTGGAA 60.885 55.000 26.52 11.40 40.96 3.53
2588 8264 0.036732 TGCTCTCGCCAAGTTGGAAT 59.963 50.000 26.52 0.00 40.96 3.01
2589 8265 1.277842 TGCTCTCGCCAAGTTGGAATA 59.722 47.619 26.52 8.47 40.96 1.75
2686 8636 3.638160 GCAAGGATCCATTGGAAGCATAA 59.362 43.478 15.82 0.00 34.34 1.90
2783 8739 2.609747 AGCCTCTCTAACAACACTGGA 58.390 47.619 0.00 0.00 0.00 3.86
2799 8755 4.081406 CACTGGAACTTGGATCCAATCAA 58.919 43.478 27.20 15.34 45.96 2.57
2836 8792 3.261897 ACCACCAGAGTTAGGATCACTTG 59.738 47.826 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.376075 TGCATGTTTGATCAAGTTTTTAGAAAA 57.624 25.926 8.41 0.00 0.00 2.29
6 7 8.816144 GTGCATGTTTGATCAAGTTTTTAGAAA 58.184 29.630 8.41 0.00 0.00 2.52
7 8 7.978414 TGTGCATGTTTGATCAAGTTTTTAGAA 59.022 29.630 8.41 0.00 0.00 2.10
10 11 8.484641 TTTGTGCATGTTTGATCAAGTTTTTA 57.515 26.923 8.41 0.00 0.00 1.52
11 12 6.981762 TTGTGCATGTTTGATCAAGTTTTT 57.018 29.167 8.41 0.00 0.00 1.94
13 14 7.556733 AATTTGTGCATGTTTGATCAAGTTT 57.443 28.000 8.41 0.00 0.00 2.66
14 15 7.280428 TCAAATTTGTGCATGTTTGATCAAGTT 59.720 29.630 17.47 0.00 36.11 2.66
16 17 7.042321 AGTCAAATTTGTGCATGTTTGATCAAG 60.042 33.333 17.47 0.00 41.11 3.02
17 18 6.762187 AGTCAAATTTGTGCATGTTTGATCAA 59.238 30.769 17.47 3.38 41.11 2.57
18 19 6.282167 AGTCAAATTTGTGCATGTTTGATCA 58.718 32.000 17.47 0.00 41.11 2.92
19 20 6.774354 AGTCAAATTTGTGCATGTTTGATC 57.226 33.333 17.47 12.08 41.11 2.92
20 21 7.556733 AAAGTCAAATTTGTGCATGTTTGAT 57.443 28.000 17.47 5.03 41.11 2.57
22 23 7.242079 TCAAAAGTCAAATTTGTGCATGTTTG 58.758 30.769 17.47 17.07 38.57 2.93
23 24 7.375106 TCAAAAGTCAAATTTGTGCATGTTT 57.625 28.000 17.47 8.16 38.57 2.83
24 25 6.981762 TCAAAAGTCAAATTTGTGCATGTT 57.018 29.167 17.47 3.97 38.57 2.71
27 28 9.857957 AAAAATTCAAAAGTCAAATTTGTGCAT 57.142 22.222 17.47 2.05 38.57 3.96
71 72 9.621629 TCCTTTAATTGAAAGTACTCTGAACAA 57.378 29.630 0.00 0.00 42.74 2.83
75 76 9.924650 GTACTCCTTTAATTGAAAGTACTCTGA 57.075 33.333 13.66 0.00 42.74 3.27
76 77 9.706691 TGTACTCCTTTAATTGAAAGTACTCTG 57.293 33.333 18.38 2.26 42.74 3.35
107 108 8.832521 CGCCATAGAAAATAAATAACCACTGTA 58.167 33.333 0.00 0.00 0.00 2.74
110 111 7.875327 ACGCCATAGAAAATAAATAACCACT 57.125 32.000 0.00 0.00 0.00 4.00
111 112 8.185505 TGAACGCCATAGAAAATAAATAACCAC 58.814 33.333 0.00 0.00 0.00 4.16
113 114 9.744468 AATGAACGCCATAGAAAATAAATAACC 57.256 29.630 0.00 0.00 34.45 2.85
146 147 3.153919 GTCCCATTGCAGGAAGTTAACA 58.846 45.455 8.61 0.00 34.43 2.41
147 148 2.492088 GGTCCCATTGCAGGAAGTTAAC 59.508 50.000 0.00 0.00 34.43 2.01
180 189 4.671590 TGGGACCTGCGTCGGAGA 62.672 66.667 16.09 0.00 40.17 3.71
208 217 4.950475 GGGAAGGAGAAAAAGGTAAGATGG 59.050 45.833 0.00 0.00 0.00 3.51
225 235 3.728373 CGTGGGGGAAGGGGAAGG 61.728 72.222 0.00 0.00 0.00 3.46
371 408 0.910088 AAGTCCTCCCTTCCCTTCCG 60.910 60.000 0.00 0.00 0.00 4.30
425 474 1.296722 CGAGGAAGACGCGTACTCG 60.297 63.158 27.88 27.88 43.85 4.18
426 475 0.445436 TTCGAGGAAGACGCGTACTC 59.555 55.000 13.97 16.39 43.23 2.59
427 476 1.093159 ATTCGAGGAAGACGCGTACT 58.907 50.000 13.97 8.73 43.23 2.73
455 512 9.490663 AATCGACTTATTTAAAAAGAATGCGAG 57.509 29.630 13.55 0.00 32.42 5.03
519 668 2.757099 CCTTCAGGTGGCCATGGC 60.757 66.667 29.47 29.47 41.06 4.40
520 669 2.043652 CCCTTCAGGTGGCCATGG 60.044 66.667 9.72 7.63 0.00 3.66
521 670 1.077212 CTCCCTTCAGGTGGCCATG 60.077 63.158 9.72 3.78 36.75 3.66
522 671 1.229951 TCTCCCTTCAGGTGGCCAT 60.230 57.895 9.72 0.00 36.75 4.40
523 672 2.206900 TCTCCCTTCAGGTGGCCA 59.793 61.111 0.00 0.00 36.75 5.36
605 776 2.657143 ACCGAGTCCTGAATAGAGACC 58.343 52.381 0.00 0.00 0.00 3.85
623 794 4.642429 ACTGAATGAAGACCAACACTACC 58.358 43.478 0.00 0.00 0.00 3.18
661 833 2.095617 CAGACAAGCATGCGTCATTGAA 60.096 45.455 22.52 0.00 34.48 2.69
680 853 4.081198 AGACCTTCTAACATTCTGCTCCAG 60.081 45.833 0.00 0.00 0.00 3.86
762 1133 0.036022 AGAAAGTGACTGCCAGGCTC 59.964 55.000 14.15 2.98 0.00 4.70
772 1145 6.363473 CGTTGATAGTCCAAAAGAAAGTGAC 58.637 40.000 0.00 0.00 0.00 3.67
786 1159 0.855349 CGCTGATGCCGTTGATAGTC 59.145 55.000 0.00 0.00 35.36 2.59
900 1709 0.396974 AAAGGTGTGGCAAGGCAAGA 60.397 50.000 0.00 0.00 0.00 3.02
943 1764 1.079819 CTTGACGATCCAGTGGCGT 60.080 57.895 13.79 13.79 41.45 5.68
957 1778 0.322975 GGAGAAGTGCCTCTGCTTGA 59.677 55.000 0.00 0.00 38.71 3.02
981 1802 6.667414 TGGACATATTGTTTAGGCCAGATTTT 59.333 34.615 5.01 0.00 0.00 1.82
1001 1822 2.295904 TCCAGGCGATCATTGGACA 58.704 52.632 5.89 0.00 36.13 4.02
1006 1830 1.202734 CCATGAGTCCAGGCGATCATT 60.203 52.381 0.00 0.00 30.09 2.57
1012 1836 0.321564 TTTGTCCATGAGTCCAGGCG 60.322 55.000 0.00 0.00 0.00 5.52
1013 1837 1.457346 CTTTGTCCATGAGTCCAGGC 58.543 55.000 0.00 0.00 0.00 4.85
1148 1979 1.271871 TGTCTAACATGCCAACAGGGG 60.272 52.381 0.00 0.00 37.04 4.79
1151 1982 1.470098 GCCTGTCTAACATGCCAACAG 59.530 52.381 9.83 9.83 34.32 3.16
1173 2576 2.956132 TGGGGCAAATCTGAAAAGTGA 58.044 42.857 0.00 0.00 0.00 3.41
1180 2583 2.225091 ACACAAGATGGGGCAAATCTGA 60.225 45.455 2.34 0.00 34.59 3.27
1200 2603 3.055385 TGTTGCCACTAAGGTCCAGATAC 60.055 47.826 0.00 0.00 40.61 2.24
1222 2625 0.849417 GGGATTGAGCCCTGGAGAAT 59.151 55.000 0.00 0.00 45.12 2.40
1223 2626 2.311287 GGGATTGAGCCCTGGAGAA 58.689 57.895 0.00 0.00 45.12 2.87
1247 2650 0.896940 CTGGGCAAGAGCACCAATGT 60.897 55.000 0.00 0.00 46.13 2.71
1264 2667 4.141981 ACATAGATCCAAGTGAGTGAGCTG 60.142 45.833 0.00 0.00 0.00 4.24
1286 2689 2.409870 CCCCGGAGAATGCTGCAAC 61.410 63.158 6.36 4.14 31.98 4.17
1287 2690 2.045045 CCCCGGAGAATGCTGCAA 60.045 61.111 6.36 0.00 31.98 4.08
1288 2691 4.802051 GCCCCGGAGAATGCTGCA 62.802 66.667 0.73 4.13 31.98 4.41
1289 2692 4.496336 AGCCCCGGAGAATGCTGC 62.496 66.667 0.73 0.00 31.70 5.25
1290 2693 2.203126 GAGCCCCGGAGAATGCTG 60.203 66.667 0.73 0.00 33.41 4.41
1291 2694 1.639635 ATTGAGCCCCGGAGAATGCT 61.640 55.000 0.73 2.05 36.62 3.79
1292 2695 1.152881 ATTGAGCCCCGGAGAATGC 60.153 57.895 0.73 0.00 0.00 3.56
1293 2696 0.536006 GGATTGAGCCCCGGAGAATG 60.536 60.000 0.73 0.00 0.00 2.67
1294 2697 1.709994 GGGATTGAGCCCCGGAGAAT 61.710 60.000 0.73 0.00 42.62 2.40
1295 2698 2.375345 GGGATTGAGCCCCGGAGAA 61.375 63.158 0.73 0.00 42.62 2.87
1296 2699 2.768344 GGGATTGAGCCCCGGAGA 60.768 66.667 0.73 0.00 42.62 3.71
1302 2705 4.371713 CAATGCTAGATGGGATTGAGCCC 61.372 52.174 4.73 0.00 44.18 5.19
1306 2709 3.824133 CACCAATGCTAGATGGGATTGA 58.176 45.455 11.15 0.00 44.18 2.57
1328 2731 1.622811 AGTGAGTGAGCTGGGAAAGAG 59.377 52.381 0.00 0.00 0.00 2.85
1333 2736 0.471780 TCCAAGTGAGTGAGCTGGGA 60.472 55.000 0.00 0.00 32.66 4.37
1336 2739 4.501229 GGATAGATCCAAGTGAGTGAGCTG 60.501 50.000 3.54 0.00 46.38 4.24
1434 3090 5.079643 AGGCATGGAAGAAACAAACTGTAT 58.920 37.500 0.00 0.00 0.00 2.29
1439 3095 5.009610 TGAACTAGGCATGGAAGAAACAAAC 59.990 40.000 0.00 0.00 0.00 2.93
1443 3099 4.327680 ACTGAACTAGGCATGGAAGAAAC 58.672 43.478 0.00 0.00 0.00 2.78
1449 3105 2.265367 TCCAACTGAACTAGGCATGGA 58.735 47.619 0.00 0.73 36.22 3.41
1461 3117 5.309543 TCAAATTCCCTAGTCTTCCAACTGA 59.690 40.000 0.00 0.00 0.00 3.41
1466 3122 5.630069 GCTCATCAAATTCCCTAGTCTTCCA 60.630 44.000 0.00 0.00 0.00 3.53
1507 3412 6.071952 GGTTCAAATAGACAAGATGAGGCAAA 60.072 38.462 0.00 0.00 0.00 3.68
1513 3418 6.542821 ACCAAGGTTCAAATAGACAAGATGA 58.457 36.000 0.00 0.00 0.00 2.92
1610 3515 1.825474 AGATCCGTTCTGGTCGTTGAT 59.175 47.619 0.00 0.00 39.52 2.57
1641 4049 9.461312 AAGATAGTTTTGTACAATTGCCTATGA 57.539 29.630 9.56 0.00 0.00 2.15
1648 4056 7.333423 TCGAGGGAAGATAGTTTTGTACAATTG 59.667 37.037 9.56 3.24 0.00 2.32
1697 4605 6.899075 TCTTCCTACTTTACTAGCCATGGTAA 59.101 38.462 14.67 0.61 31.23 2.85
1705 4613 6.363882 TCCCTAGTCTTCCTACTTTACTAGC 58.636 44.000 0.00 0.00 38.75 3.42
1806 4714 2.169144 CCCCAATGCTTGAAGGGATTTC 59.831 50.000 0.00 0.00 44.30 2.17
1838 4746 3.589988 GGACATATCCAAGTATGCGAGG 58.410 50.000 0.00 0.00 45.47 4.63
1975 4883 3.203710 TGGAGATGCTCATCAAATTCCCT 59.796 43.478 11.90 0.00 40.22 4.20
2005 4913 5.192927 CAAATAGACAAGATGGGGCAAGTA 58.807 41.667 0.00 0.00 0.00 2.24
2037 4945 1.251527 GGCCCGAGAGAGAGTTGTGA 61.252 60.000 0.00 0.00 0.00 3.58
2038 4946 1.216710 GGCCCGAGAGAGAGTTGTG 59.783 63.158 0.00 0.00 0.00 3.33
2044 4952 0.178958 GGGATTAGGCCCGAGAGAGA 60.179 60.000 0.00 0.00 38.58 3.10
2076 4984 3.817647 AGTTTTCAAGCTTGGCTAGAGTG 59.182 43.478 25.73 0.00 38.25 3.51
2077 4985 4.092116 AGTTTTCAAGCTTGGCTAGAGT 57.908 40.909 25.73 7.69 38.25 3.24
2091 4999 2.778299 CCGGACAGATCCAAGTTTTCA 58.222 47.619 0.00 0.00 46.67 2.69
2095 5003 0.400213 TTGCCGGACAGATCCAAGTT 59.600 50.000 5.05 0.00 46.67 2.66
2098 5006 0.617935 TCATTGCCGGACAGATCCAA 59.382 50.000 5.05 0.00 46.67 3.53
2106 5014 1.635663 CGTTCAGGTCATTGCCGGAC 61.636 60.000 5.05 0.00 32.65 4.79
2109 5017 0.744414 ATCCGTTCAGGTCATTGCCG 60.744 55.000 0.00 0.00 41.99 5.69
2128 5036 5.427857 TTACCTAGGGATGTTGGGATAGA 57.572 43.478 14.81 0.00 0.00 1.98
2130 5038 5.914716 ACAATTACCTAGGGATGTTGGGATA 59.085 40.000 14.81 0.00 0.00 2.59
2163 5071 7.058525 TGTAGTAAAAGAGATCGATGGAGGTA 58.941 38.462 0.54 0.00 0.00 3.08
2180 5088 8.736244 GCCATGGTAGAGAAAAATTGTAGTAAA 58.264 33.333 14.67 0.00 0.00 2.01
2190 5098 6.212791 ACTGTACTAGCCATGGTAGAGAAAAA 59.787 38.462 21.20 4.81 36.28 1.94
2195 5103 5.241949 CCTTACTGTACTAGCCATGGTAGAG 59.758 48.000 21.20 15.05 39.02 2.43
2205 5113 8.753175 CATTAAATTCGTCCTTACTGTACTAGC 58.247 37.037 0.00 0.00 0.00 3.42
2208 5116 7.491696 GCTCATTAAATTCGTCCTTACTGTACT 59.508 37.037 0.00 0.00 0.00 2.73
2212 5120 5.817816 AGGCTCATTAAATTCGTCCTTACTG 59.182 40.000 0.00 0.00 0.00 2.74
2217 5125 4.443598 GGAGAGGCTCATTAAATTCGTCCT 60.444 45.833 18.26 0.00 31.08 3.85
2219 5127 4.271291 GTGGAGAGGCTCATTAAATTCGTC 59.729 45.833 18.26 0.78 31.08 4.20
2221 5129 4.446371 AGTGGAGAGGCTCATTAAATTCG 58.554 43.478 18.26 0.00 31.08 3.34
2228 5142 1.988107 TGGAAAGTGGAGAGGCTCATT 59.012 47.619 18.26 0.00 31.08 2.57
2246 5160 0.038744 ACAAGATGGGGCAAGTCTGG 59.961 55.000 0.00 0.00 0.00 3.86
2257 5171 3.181503 CGAGCTCCAAATTGACAAGATGG 60.182 47.826 8.47 13.39 0.00 3.51
2279 5193 1.542472 GCCCGAGAGAGAGCTATAACC 59.458 57.143 0.00 0.00 0.00 2.85
2284 5198 0.844660 TTAGGCCCGAGAGAGAGCTA 59.155 55.000 0.00 0.00 0.00 3.32
2286 5200 0.601057 GATTAGGCCCGAGAGAGAGC 59.399 60.000 0.00 0.00 0.00 4.09
2324 7996 1.066908 CAAGTTTTCGAGCTTGGCCAA 59.933 47.619 19.25 19.25 38.61 4.52
2326 7998 3.479255 CAAGTTTTCGAGCTTGGCC 57.521 52.632 14.63 0.00 38.61 5.36
2375 8047 4.079958 ACAATTACCTAGGGATGTTGGGAC 60.080 45.833 14.81 0.00 0.00 4.46
2383 8055 9.152327 GGTTAGTTAGTACAATTACCTAGGGAT 57.848 37.037 14.81 3.76 0.00 3.85
2423 8096 8.301002 GGCATGGTAGAAACAAATTGTAGTAAA 58.699 33.333 0.00 0.00 0.00 2.01
2457 8130 7.202139 GGTCATCAAATTCCCTACTCTTCCTAT 60.202 40.741 0.00 0.00 0.00 2.57
2477 8150 2.746362 CTGCAAAGTGAAGAGGGTCATC 59.254 50.000 0.00 0.00 0.00 2.92
2482 8155 4.170292 CAAATCTGCAAAGTGAAGAGGG 57.830 45.455 0.00 0.00 35.05 4.30
2533 8209 3.700038 GGATTCCGACTGAGAGAAGGTTA 59.300 47.826 0.00 0.00 0.00 2.85
2537 8213 4.824537 TGATAGGATTCCGACTGAGAGAAG 59.175 45.833 0.00 0.00 0.00 2.85
2538 8214 4.793201 TGATAGGATTCCGACTGAGAGAA 58.207 43.478 0.00 0.00 0.00 2.87
2545 8221 4.696479 AATGCTTGATAGGATTCCGACT 57.304 40.909 0.00 0.00 37.88 4.18
2547 8223 4.576053 CACAAATGCTTGATAGGATTCCGA 59.424 41.667 0.00 0.00 41.02 4.55
2569 8245 6.613028 AAGTATTCCAACTTGGCGAGAGCA 62.613 45.833 9.20 0.00 46.85 4.26
2593 8269 1.134280 CATGGATGGCGGGATAGATCC 60.134 57.143 0.00 0.00 46.41 3.36
2783 8739 6.725834 ACCATTAAGTTGATTGGATCCAAGTT 59.274 34.615 29.98 18.81 39.47 2.66
2836 8792 7.064490 GGAAAGATTCAGATGTGAGAGAAGAAC 59.936 40.741 0.00 0.00 32.98 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.