Multiple sequence alignment - TraesCS1D01G050400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G050400 chr1D 100.000 3271 0 0 1 3271 30572089 30575359 0.000000e+00 6041.0
1 TraesCS1D01G050400 chr1D 95.593 1475 46 6 1808 3268 31015040 31016509 0.000000e+00 2346.0
2 TraesCS1D01G050400 chr1D 83.376 1931 265 26 485 2374 30651871 30653786 0.000000e+00 1736.0
3 TraesCS1D01G050400 chr1D 83.159 1912 271 25 445 2320 31060105 31062001 0.000000e+00 1700.0
4 TraesCS1D01G050400 chr1D 88.032 1362 148 8 784 2131 31038496 31039856 0.000000e+00 1598.0
5 TraesCS1D01G050400 chr1D 82.430 1753 253 35 592 2311 30314839 30316569 0.000000e+00 1480.0
6 TraesCS1D01G050400 chr1D 81.999 1811 250 46 530 2289 30666600 30668385 0.000000e+00 1469.0
7 TraesCS1D01G050400 chr1D 80.354 1242 191 39 1327 2529 30362105 30363332 0.000000e+00 893.0
8 TraesCS1D01G050400 chr1D 86.694 481 49 9 2802 3271 31063672 31064148 1.350000e-143 520.0
9 TraesCS1D01G050400 chr1D 85.158 411 53 7 2865 3271 30654010 30654416 6.530000e-112 414.0
10 TraesCS1D01G050400 chr1D 82.773 476 65 12 2805 3271 30509029 30509496 3.040000e-110 409.0
11 TraesCS1D01G050400 chr1D 79.291 536 91 15 20 554 31030496 31031012 1.120000e-94 357.0
12 TraesCS1D01G050400 chr1D 80.936 299 55 2 2932 3230 31333972 31334268 5.460000e-58 235.0
13 TraesCS1D01G050400 chr1D 86.341 205 28 0 422 626 30572438 30572642 1.180000e-54 224.0
14 TraesCS1D01G050400 chr1D 86.341 205 28 0 350 554 30572510 30572714 1.180000e-54 224.0
15 TraesCS1D01G050400 chr1D 86.111 144 17 3 2387 2529 30351599 30351740 5.650000e-33 152.0
16 TraesCS1D01G050400 chr1D 79.381 97 17 1 458 554 30666600 30666693 7.580000e-07 65.8
17 TraesCS1D01G050400 chr1D 78.351 97 18 1 458 554 30374851 30374944 3.520000e-05 60.2
18 TraesCS1D01G050400 chr1D 89.362 47 5 0 486 532 31285622 31285668 3.520000e-05 60.2
19 TraesCS1D01G050400 chr1D 94.595 37 2 0 485 521 30651940 30651976 1.270000e-04 58.4
20 TraesCS1D01G050400 chr1D 94.444 36 2 0 486 521 31285762 31285797 4.560000e-04 56.5
21 TraesCS1D01G050400 chr1B 83.602 1921 266 21 485 2367 48932929 48934838 0.000000e+00 1757.0
22 TraesCS1D01G050400 chr1B 83.414 1869 267 16 485 2318 48997091 48998951 0.000000e+00 1694.0
23 TraesCS1D01G050400 chr1B 83.819 1545 206 23 765 2272 49663580 49665117 0.000000e+00 1428.0
24 TraesCS1D01G050400 chr1B 81.246 1589 239 38 558 2108 49675851 49677418 0.000000e+00 1229.0
25 TraesCS1D01G050400 chr1B 86.117 922 110 9 1462 2367 48984448 48985367 0.000000e+00 977.0
26 TraesCS1D01G050400 chr1B 85.714 574 63 11 1747 2311 49612164 49612727 3.640000e-164 588.0
27 TraesCS1D01G050400 chr1B 83.333 414 53 10 2865 3271 48999624 49000028 5.160000e-98 368.0
28 TraesCS1D01G050400 chr1B 78.398 412 63 10 2875 3262 49842881 49843290 9.070000e-61 244.0
29 TraesCS1D01G050400 chr1B 90.840 131 8 3 2838 2966 49639085 49639213 4.340000e-39 172.0
30 TraesCS1D01G050400 chr1B 85.119 168 18 5 2435 2595 48934988 48935155 7.260000e-37 165.0
31 TraesCS1D01G050400 chr1B 82.857 140 17 7 3107 3245 49172506 49172639 5.730000e-23 119.0
32 TraesCS1D01G050400 chr1B 78.505 107 20 1 415 521 48932931 48933034 2.110000e-07 67.6
33 TraesCS1D01G050400 chr1B 88.333 60 1 1 2467 2520 49667482 49667541 2.110000e-07 67.6
34 TraesCS1D01G050400 chr1A 82.728 1679 229 36 691 2318 30334279 30335947 0.000000e+00 1437.0
35 TraesCS1D01G050400 chr1A 86.182 1223 153 9 1066 2273 30389383 30390604 0.000000e+00 1308.0
36 TraesCS1D01G050400 chr1A 82.974 464 75 4 20 482 30573596 30574056 1.820000e-112 416.0
37 TraesCS1D01G050400 chr1A 83.778 450 60 11 2363 2802 30391841 30392287 6.530000e-112 414.0
38 TraesCS1D01G050400 chr1A 84.718 373 47 7 700 1067 30388612 30388979 6.670000e-97 364.0
39 TraesCS1D01G050400 chr1A 77.684 475 75 14 2812 3262 30637282 30637749 9.000000e-66 261.0
40 TraesCS1D01G050400 chr1A 93.023 86 5 1 2432 2517 30556229 30556313 1.230000e-24 124.0
41 TraesCS1D01G050400 chr1A 88.421 95 9 2 3107 3200 30557117 30557210 2.670000e-21 113.0
42 TraesCS1D01G050400 chrUn 86.111 144 17 3 2387 2529 322993641 322993500 5.650000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G050400 chr1D 30572089 30575359 3270 False 2163.000000 6041 90.894000 1 3271 3 chr1D.!!$F10 3270
1 TraesCS1D01G050400 chr1D 31015040 31016509 1469 False 2346.000000 2346 95.593000 1808 3268 1 chr1D.!!$F6 1460
2 TraesCS1D01G050400 chr1D 31038496 31039856 1360 False 1598.000000 1598 88.032000 784 2131 1 chr1D.!!$F8 1347
3 TraesCS1D01G050400 chr1D 30314839 30316569 1730 False 1480.000000 1480 82.430000 592 2311 1 chr1D.!!$F1 1719
4 TraesCS1D01G050400 chr1D 31060105 31064148 4043 False 1110.000000 1700 84.926500 445 3271 2 chr1D.!!$F13 2826
5 TraesCS1D01G050400 chr1D 30362105 30363332 1227 False 893.000000 893 80.354000 1327 2529 1 chr1D.!!$F3 1202
6 TraesCS1D01G050400 chr1D 30666600 30668385 1785 False 767.400000 1469 80.690000 458 2289 2 chr1D.!!$F12 1831
7 TraesCS1D01G050400 chr1D 30651871 30654416 2545 False 736.133333 1736 87.709667 485 3271 3 chr1D.!!$F11 2786
8 TraesCS1D01G050400 chr1D 31030496 31031012 516 False 357.000000 357 79.291000 20 554 1 chr1D.!!$F7 534
9 TraesCS1D01G050400 chr1B 49675851 49677418 1567 False 1229.000000 1229 81.246000 558 2108 1 chr1B.!!$F5 1550
10 TraesCS1D01G050400 chr1B 48997091 49000028 2937 False 1031.000000 1694 83.373500 485 3271 2 chr1B.!!$F8 2786
11 TraesCS1D01G050400 chr1B 48984448 48985367 919 False 977.000000 977 86.117000 1462 2367 1 chr1B.!!$F1 905
12 TraesCS1D01G050400 chr1B 49663580 49667541 3961 False 747.800000 1428 86.076000 765 2520 2 chr1B.!!$F9 1755
13 TraesCS1D01G050400 chr1B 48932929 48935155 2226 False 663.200000 1757 82.408667 415 2595 3 chr1B.!!$F7 2180
14 TraesCS1D01G050400 chr1B 49612164 49612727 563 False 588.000000 588 85.714000 1747 2311 1 chr1B.!!$F3 564
15 TraesCS1D01G050400 chr1A 30334279 30335947 1668 False 1437.000000 1437 82.728000 691 2318 1 chr1A.!!$F1 1627
16 TraesCS1D01G050400 chr1A 30388612 30392287 3675 False 695.333333 1308 84.892667 700 2802 3 chr1A.!!$F4 2102

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.325671 TCTCTCAGGCCGAATCCCTT 60.326 55.0 0.0 0.0 0.0 3.95 F
1317 1732 0.106708 GCGTTGGAGGCTATGGATCA 59.893 55.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1967 0.039618 GGCCAATCCAGGTCCTTTGA 59.960 55.0 0.00 0.0 34.01 2.69 R
3202 5955 0.323629 TCGAAAGGCCAAAGATCGGT 59.676 50.0 5.01 0.0 34.47 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.134815 CAGCATATTTAGTGGTATTGTCTTGC 58.865 38.462 0.00 0.00 0.00 4.01
33 34 2.566833 AGTGGTATTGTCTTGCTGCA 57.433 45.000 0.00 0.00 0.00 4.41
43 44 7.707893 GGTATTGTCTTGCTGCATGATTTAAAT 59.292 33.333 19.34 17.10 0.00 1.40
49 50 9.125906 GTCTTGCTGCATGATTTAAATATGATC 57.874 33.333 19.34 0.95 0.00 2.92
51 52 9.129209 CTTGCTGCATGATTTAAATATGATCAG 57.871 33.333 9.72 13.03 33.70 2.90
89 90 5.221422 CCTCATCTTGACTATCTTGACCTCC 60.221 48.000 0.00 0.00 0.00 4.30
92 93 3.444034 TCTTGACTATCTTGACCTCCGTG 59.556 47.826 0.00 0.00 0.00 4.94
94 95 2.753452 TGACTATCTTGACCTCCGTGAC 59.247 50.000 0.00 0.00 0.00 3.67
99 100 1.483004 TCTTGACCTCCGTGACAACAA 59.517 47.619 0.00 0.00 0.00 2.83
106 107 2.029020 CCTCCGTGACAACAATCTCTCA 60.029 50.000 0.00 0.00 0.00 3.27
115 116 2.611225 ACAATCTCTCAGGCCGAATC 57.389 50.000 0.00 0.00 0.00 2.52
119 120 0.325671 TCTCTCAGGCCGAATCCCTT 60.326 55.000 0.00 0.00 0.00 3.95
124 125 1.284785 TCAGGCCGAATCCCTTCAAAT 59.715 47.619 0.00 0.00 0.00 2.32
135 136 4.314522 TCCCTTCAAATATTGGTGCTCA 57.685 40.909 0.00 0.00 0.00 4.26
138 139 4.365723 CCTTCAAATATTGGTGCTCATGC 58.634 43.478 0.00 0.00 40.20 4.06
143 144 5.067674 TCAAATATTGGTGCTCATGCTAACC 59.932 40.000 0.00 4.16 40.48 2.85
147 148 1.630369 TGGTGCTCATGCTAACCTCTT 59.370 47.619 10.61 0.00 36.54 2.85
154 155 5.586243 TGCTCATGCTAACCTCTTGTTTATC 59.414 40.000 0.00 0.00 40.48 1.75
166 167 8.655935 ACCTCTTGTTTATCAATCTTTCCAAT 57.344 30.769 0.00 0.00 35.35 3.16
181 182 6.053005 TCTTTCCAATAATAGCTTACACGGG 58.947 40.000 0.00 0.00 0.00 5.28
182 183 5.362105 TTCCAATAATAGCTTACACGGGT 57.638 39.130 0.00 0.00 0.00 5.28
228 229 6.845758 TCTTACAAAACTAATCTCCCTCGA 57.154 37.500 0.00 0.00 0.00 4.04
237 238 4.847512 ACTAATCTCCCTCGATCTCTCCTA 59.152 45.833 0.00 0.00 0.00 2.94
253 254 9.436957 GATCTCTCCTACAATTTGTTGTCTAAA 57.563 33.333 7.45 0.00 36.44 1.85
256 257 7.514721 TCTCCTACAATTTGTTGTCTAAAGGT 58.485 34.615 7.45 0.00 36.44 3.50
258 259 8.161699 TCCTACAATTTGTTGTCTAAAGGTTC 57.838 34.615 7.45 0.00 36.44 3.62
260 261 6.783708 ACAATTTGTTGTCTAAAGGTTCCA 57.216 33.333 0.00 0.00 0.00 3.53
261 262 7.360113 ACAATTTGTTGTCTAAAGGTTCCAT 57.640 32.000 0.00 0.00 0.00 3.41
262 263 7.433680 ACAATTTGTTGTCTAAAGGTTCCATC 58.566 34.615 0.00 0.00 0.00 3.51
269 270 6.428083 TGTCTAAAGGTTCCATCACTTGTA 57.572 37.500 0.00 0.00 0.00 2.41
270 271 6.228258 TGTCTAAAGGTTCCATCACTTGTAC 58.772 40.000 0.00 0.00 0.00 2.90
271 272 6.183361 TGTCTAAAGGTTCCATCACTTGTACA 60.183 38.462 0.00 0.00 0.00 2.90
272 273 6.147328 GTCTAAAGGTTCCATCACTTGTACAC 59.853 42.308 0.00 0.00 0.00 2.90
273 274 4.706842 AAGGTTCCATCACTTGTACACT 57.293 40.909 0.00 0.00 0.00 3.55
274 275 5.818678 AAGGTTCCATCACTTGTACACTA 57.181 39.130 0.00 0.00 0.00 2.74
275 276 5.407407 AGGTTCCATCACTTGTACACTAG 57.593 43.478 0.00 0.00 0.00 2.57
276 277 4.223032 AGGTTCCATCACTTGTACACTAGG 59.777 45.833 0.00 0.00 0.00 3.02
277 278 3.887621 TCCATCACTTGTACACTAGGC 57.112 47.619 0.00 0.00 0.00 3.93
278 279 3.169908 TCCATCACTTGTACACTAGGCA 58.830 45.455 0.00 0.00 0.00 4.75
281 282 3.380479 TCACTTGTACACTAGGCACAC 57.620 47.619 0.00 0.00 0.00 3.82
282 283 2.963101 TCACTTGTACACTAGGCACACT 59.037 45.455 0.00 0.00 0.00 3.55
283 284 3.005472 TCACTTGTACACTAGGCACACTC 59.995 47.826 0.00 0.00 0.00 3.51
284 285 2.963101 ACTTGTACACTAGGCACACTCA 59.037 45.455 0.00 0.00 0.00 3.41
285 286 3.386726 ACTTGTACACTAGGCACACTCAA 59.613 43.478 0.00 0.00 0.00 3.02
287 288 2.696187 TGTACACTAGGCACACTCAACA 59.304 45.455 0.00 0.00 0.00 3.33
289 290 2.561569 ACACTAGGCACACTCAACAAC 58.438 47.619 0.00 0.00 0.00 3.32
290 291 2.170607 ACACTAGGCACACTCAACAACT 59.829 45.455 0.00 0.00 0.00 3.16
291 292 3.206150 CACTAGGCACACTCAACAACTT 58.794 45.455 0.00 0.00 0.00 2.66
292 293 4.141801 ACACTAGGCACACTCAACAACTTA 60.142 41.667 0.00 0.00 0.00 2.24
293 294 4.814234 CACTAGGCACACTCAACAACTTAA 59.186 41.667 0.00 0.00 0.00 1.85
294 295 5.295787 CACTAGGCACACTCAACAACTTAAA 59.704 40.000 0.00 0.00 0.00 1.52
295 296 4.900635 AGGCACACTCAACAACTTAAAG 57.099 40.909 0.00 0.00 0.00 1.85
296 297 3.632145 AGGCACACTCAACAACTTAAAGG 59.368 43.478 0.00 0.00 0.00 3.11
297 298 3.630312 GGCACACTCAACAACTTAAAGGA 59.370 43.478 0.00 0.00 0.00 3.36
298 299 4.261197 GGCACACTCAACAACTTAAAGGAG 60.261 45.833 0.00 0.00 0.00 3.69
299 300 4.789802 GCACACTCAACAACTTAAAGGAGC 60.790 45.833 0.00 0.00 0.00 4.70
300 301 4.576463 CACACTCAACAACTTAAAGGAGCT 59.424 41.667 0.00 0.00 0.00 4.09
301 302 4.816925 ACACTCAACAACTTAAAGGAGCTC 59.183 41.667 4.71 4.71 0.00 4.09
302 303 4.816385 CACTCAACAACTTAAAGGAGCTCA 59.184 41.667 17.19 0.00 0.00 4.26
303 304 4.816925 ACTCAACAACTTAAAGGAGCTCAC 59.183 41.667 17.19 5.01 0.00 3.51
304 305 3.807622 TCAACAACTTAAAGGAGCTCACG 59.192 43.478 17.19 0.00 0.00 4.35
309 310 5.465724 ACAACTTAAAGGAGCTCACGTTAAG 59.534 40.000 28.03 28.03 42.02 1.85
319 320 2.853281 GCTCACGTTAAGCCACAACAAC 60.853 50.000 8.23 0.00 33.53 3.32
338 339 3.646736 ACTTAACTGGCCCAATACCTC 57.353 47.619 0.00 0.00 0.00 3.85
347 348 2.241430 GGCCCAATACCTCCTAGTTTGT 59.759 50.000 0.00 0.00 0.00 2.83
353 354 7.201794 GCCCAATACCTCCTAGTTTGTTAAATC 60.202 40.741 0.00 0.00 0.00 2.17
356 357 8.893727 CAATACCTCCTAGTTTGTTAAATCTGG 58.106 37.037 0.00 0.00 0.00 3.86
358 359 4.332819 CCTCCTAGTTTGTTAAATCTGGCG 59.667 45.833 0.00 0.00 0.00 5.69
361 362 4.935808 CCTAGTTTGTTAAATCTGGCGAGT 59.064 41.667 0.00 0.00 0.00 4.18
364 365 6.870971 AGTTTGTTAAATCTGGCGAGTTTA 57.129 33.333 0.00 0.00 0.00 2.01
365 366 7.266922 AGTTTGTTAAATCTGGCGAGTTTAA 57.733 32.000 10.10 10.10 0.00 1.52
369 370 9.535878 TTTGTTAAATCTGGCGAGTTTAAAATT 57.464 25.926 13.51 0.00 31.42 1.82
379 380 8.282455 TGGCGAGTTTAAAATTGTTGGATATA 57.718 30.769 4.90 0.00 0.00 0.86
414 415 8.539117 AAAATCATGGGTTCTATTCCTAAAGG 57.461 34.615 0.00 0.00 0.00 3.11
418 419 5.466127 TGGGTTCTATTCCTAAAGGCATT 57.534 39.130 0.00 0.00 34.44 3.56
430 431 6.489603 TCCTAAAGGCATTGGAAATCTAACA 58.510 36.000 0.00 0.00 34.44 2.41
437 438 7.830739 AGGCATTGGAAATCTAACAAGTTTAG 58.169 34.615 0.00 0.00 0.00 1.85
463 464 6.508030 TGGTTGGATATATCTAGCAACCAA 57.492 37.500 31.80 22.55 45.25 3.67
468 469 9.236006 GTTGGATATATCTAGCAACCAAATCAT 57.764 33.333 16.49 0.00 37.60 2.45
555 556 6.439636 CCAGATCATGGGTTCTATTCCTAA 57.560 41.667 0.00 0.00 46.36 2.69
556 557 6.234177 CCAGATCATGGGTTCTATTCCTAAC 58.766 44.000 0.00 0.00 46.36 2.34
562 563 4.780815 TGGGTTCTATTCCTAACAGCATG 58.219 43.478 0.00 0.00 46.00 4.06
573 574 5.684704 TCCTAACAGCATGGGAAATCTAAG 58.315 41.667 0.00 0.00 43.62 2.18
581 582 7.669722 ACAGCATGGGAAATCTAAGAAGTTTAA 59.330 33.333 0.00 0.00 43.62 1.52
617 618 8.099364 TCTTTCTAACAATCAAATGAGTGGTC 57.901 34.615 14.48 0.00 43.65 4.02
654 655 8.924511 ACCTTCTCAAAATTGATCTCTGTAAA 57.075 30.769 0.00 0.00 36.46 2.01
655 656 8.787852 ACCTTCTCAAAATTGATCTCTGTAAAC 58.212 33.333 0.00 0.00 36.46 2.01
711 712 5.380043 CATATTGCCACCAGAGTTAGGATT 58.620 41.667 0.00 0.00 0.00 3.01
744 745 9.733556 TCTTCTCTCATATCTGGATCTAAGTAC 57.266 37.037 0.00 0.00 0.00 2.73
752 753 9.429359 CATATCTGGATCTAAGTACCAATCAAC 57.571 37.037 0.00 0.00 33.14 3.18
761 762 7.837863 TCTAAGTACCAATCAACTTGTAGGAG 58.162 38.462 0.00 0.00 36.62 3.69
823 824 5.283247 GTCGTTACTCGTATCAGACAACTTG 59.717 44.000 0.00 0.00 40.80 3.16
834 835 2.285220 CAGACAACTTGTTGACAGGACG 59.715 50.000 18.82 0.00 0.00 4.79
931 932 4.899502 TCCCAGTGACTTTTTCTGATCTC 58.100 43.478 0.00 0.00 0.00 2.75
938 939 5.927115 GTGACTTTTTCTGATCTCTACCGTT 59.073 40.000 0.00 0.00 0.00 4.44
941 942 5.179555 ACTTTTTCTGATCTCTACCGTTTGC 59.820 40.000 0.00 0.00 0.00 3.68
988 992 4.689612 TTGGCTGGTAGAGTTCCATATC 57.310 45.455 0.00 0.00 34.26 1.63
1085 1494 3.446873 ACACACCAAAGCAGAAAACATCA 59.553 39.130 0.00 0.00 0.00 3.07
1122 1537 2.622942 TGCTTTTCTCGCACCATTTTCT 59.377 40.909 0.00 0.00 31.40 2.52
1139 1554 2.254546 TCTTTCGCTTGCCTCTCAAA 57.745 45.000 0.00 0.00 33.65 2.69
1215 1630 6.992063 AAAAGCAAGTCTGGTGATATACTG 57.008 37.500 0.00 0.00 32.31 2.74
1317 1732 0.106708 GCGTTGGAGGCTATGGATCA 59.893 55.000 0.00 0.00 0.00 2.92
1322 1737 3.898123 GTTGGAGGCTATGGATCAGTCTA 59.102 47.826 0.00 0.00 0.00 2.59
1340 1755 6.591834 TCAGTCTATAAAGTTGAGCTTGAAGC 59.408 38.462 9.59 9.59 42.84 3.86
1397 1812 1.615502 GAAGAGTACAACGACGAGGC 58.384 55.000 0.00 0.00 0.00 4.70
1460 1875 2.532531 CGATGCATCGTCAAGCTTTT 57.467 45.000 35.19 0.00 44.74 2.27
1527 1942 3.621682 ATCGAGAGGGGGAGTTTATCT 57.378 47.619 0.00 0.00 0.00 1.98
1543 1958 7.148018 GGAGTTTATCTTCCATTTTGCATGAGA 60.148 37.037 0.00 0.00 0.00 3.27
1552 1967 6.819284 TCCATTTTGCATGAGAAAGAACTTT 58.181 32.000 0.00 0.00 35.14 2.66
1687 2102 5.365025 AGCAGCAATATTCTTCTAGACCTCA 59.635 40.000 0.00 0.00 0.00 3.86
1716 2131 2.628657 AGCTTACGTCTCAGACTTTGGT 59.371 45.455 2.61 0.00 0.00 3.67
1731 2146 4.662278 ACTTTGGTATGGCAAGAAAGCTA 58.338 39.130 0.00 0.00 34.17 3.32
1734 2149 6.041523 ACTTTGGTATGGCAAGAAAGCTAAAA 59.958 34.615 0.00 0.00 34.17 1.52
1735 2150 5.643379 TGGTATGGCAAGAAAGCTAAAAG 57.357 39.130 0.00 0.00 34.17 2.27
1736 2151 4.082245 TGGTATGGCAAGAAAGCTAAAAGC 60.082 41.667 0.00 0.00 42.84 3.51
1842 2287 7.770433 TGAAATGTGTTTCAGAAAGAGAGAAGA 59.230 33.333 0.00 0.00 46.49 2.87
1843 2288 8.511604 AAATGTGTTTCAGAAAGAGAGAAGAA 57.488 30.769 0.00 0.00 0.00 2.52
1844 2289 8.511604 AATGTGTTTCAGAAAGAGAGAAGAAA 57.488 30.769 0.00 0.00 0.00 2.52
1928 2385 2.408050 GTGTTGACTGAGAAGTGCGAT 58.592 47.619 0.00 0.00 0.00 4.58
2011 2468 4.010349 CTCCTTCCGTTCTTTTGCCTAAT 58.990 43.478 0.00 0.00 0.00 1.73
2013 2470 3.501950 CTTCCGTTCTTTTGCCTAATGC 58.498 45.455 0.00 0.00 41.77 3.56
2961 5697 7.373493 AGAATGTCAAAAAGAAGGCACAATAG 58.627 34.615 0.00 0.00 0.00 1.73
2964 5700 7.106439 TGTCAAAAAGAAGGCACAATAGAAA 57.894 32.000 0.00 0.00 0.00 2.52
2984 5728 5.360714 AGAAACTGAAGCTTCACATTTTGGA 59.639 36.000 25.16 1.00 32.90 3.53
3002 5746 3.305720 TGGACGGCCAACTTCTAGATAT 58.694 45.455 8.12 0.00 42.49 1.63
3048 5797 8.537728 TCAAACCCTAATAGCATCAATTTGAT 57.462 30.769 6.06 6.06 37.65 2.57
3075 5824 3.876914 CGTAGCAATAATTTCAGCCCTCA 59.123 43.478 0.00 0.00 0.00 3.86
3088 5837 3.018856 CAGCCCTCAAAGCATCAATACA 58.981 45.455 0.00 0.00 0.00 2.29
3103 5852 2.346766 ATACATCGCTGCATTTCCCA 57.653 45.000 0.00 0.00 0.00 4.37
3110 5859 0.527565 GCTGCATTTCCCACGACATT 59.472 50.000 0.00 0.00 0.00 2.71
3163 5912 7.854337 AGCACATTTATCATCCAAATTTCCTT 58.146 30.769 0.00 0.00 0.00 3.36
3184 5933 3.512496 TGACCATGTCCAAGTACCTGTA 58.488 45.455 0.00 0.00 0.00 2.74
3202 5955 4.578516 CCTGTACAACCACATGAAGAAACA 59.421 41.667 0.00 0.00 0.00 2.83
3206 5959 2.616376 CAACCACATGAAGAAACACCGA 59.384 45.455 0.00 0.00 0.00 4.69
3220 5973 0.447801 CACCGATCTTTGGCCTTTCG 59.552 55.000 3.32 5.38 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.046708 AGACAATACCACTAAATATGCTGTTGA 58.953 33.333 0.00 0.00 0.00 3.18
1 2 8.213518 AGACAATACCACTAAATATGCTGTTG 57.786 34.615 0.00 0.00 0.00 3.33
2 3 8.677300 CAAGACAATACCACTAAATATGCTGTT 58.323 33.333 0.00 0.00 0.00 3.16
5 6 7.012704 CAGCAAGACAATACCACTAAATATGCT 59.987 37.037 0.00 0.00 38.31 3.79
6 7 7.134815 CAGCAAGACAATACCACTAAATATGC 58.865 38.462 0.00 0.00 0.00 3.14
7 8 7.134815 GCAGCAAGACAATACCACTAAATATG 58.865 38.462 0.00 0.00 0.00 1.78
8 9 6.828273 TGCAGCAAGACAATACCACTAAATAT 59.172 34.615 0.00 0.00 0.00 1.28
9 10 6.176896 TGCAGCAAGACAATACCACTAAATA 58.823 36.000 0.00 0.00 0.00 1.40
10 11 5.009631 TGCAGCAAGACAATACCACTAAAT 58.990 37.500 0.00 0.00 0.00 1.40
11 12 4.393834 TGCAGCAAGACAATACCACTAAA 58.606 39.130 0.00 0.00 0.00 1.85
12 13 4.014569 TGCAGCAAGACAATACCACTAA 57.985 40.909 0.00 0.00 0.00 2.24
13 14 3.694043 TGCAGCAAGACAATACCACTA 57.306 42.857 0.00 0.00 0.00 2.74
14 15 2.566833 TGCAGCAAGACAATACCACT 57.433 45.000 0.00 0.00 0.00 4.00
15 16 2.749076 TCATGCAGCAAGACAATACCAC 59.251 45.455 0.00 0.00 0.00 4.16
16 17 3.070476 TCATGCAGCAAGACAATACCA 57.930 42.857 0.00 0.00 0.00 3.25
17 18 4.644103 AATCATGCAGCAAGACAATACC 57.356 40.909 1.57 0.00 0.00 2.73
18 19 8.638685 ATTTAAATCATGCAGCAAGACAATAC 57.361 30.769 1.57 0.00 0.00 1.89
23 24 9.125906 GATCATATTTAAATCATGCAGCAAGAC 57.874 33.333 1.57 0.00 0.00 3.01
43 44 4.707030 CAAGCCTGCAAAACTGATCATA 57.293 40.909 0.00 0.00 0.00 2.15
89 90 1.728971 GCCTGAGAGATTGTTGTCACG 59.271 52.381 0.00 0.00 0.00 4.35
92 93 1.066858 TCGGCCTGAGAGATTGTTGTC 60.067 52.381 0.00 0.00 0.00 3.18
94 95 2.099141 TTCGGCCTGAGAGATTGTTG 57.901 50.000 0.00 0.00 0.00 3.33
99 100 0.105246 AGGGATTCGGCCTGAGAGAT 60.105 55.000 0.00 0.00 0.00 2.75
106 107 3.884037 ATATTTGAAGGGATTCGGCCT 57.116 42.857 0.00 0.00 0.00 5.19
115 116 4.738541 GCATGAGCACCAATATTTGAAGGG 60.739 45.833 0.00 0.00 41.58 3.95
119 120 5.067674 GGTTAGCATGAGCACCAATATTTGA 59.932 40.000 0.00 0.00 45.49 2.69
124 125 3.455910 AGAGGTTAGCATGAGCACCAATA 59.544 43.478 0.00 0.00 45.49 1.90
135 136 8.814038 AAGATTGATAAACAAGAGGTTAGCAT 57.186 30.769 0.00 0.00 42.02 3.79
138 139 9.231297 TGGAAAGATTGATAAACAAGAGGTTAG 57.769 33.333 0.00 0.00 42.02 2.34
154 155 8.070171 CCGTGTAAGCTATTATTGGAAAGATTG 58.930 37.037 0.00 0.00 0.00 2.67
166 167 5.458041 GGATGTACCCGTGTAAGCTATTA 57.542 43.478 0.00 0.00 0.00 0.98
181 182 3.631250 ACAAATGGATGGTGGGATGTAC 58.369 45.455 0.00 0.00 0.00 2.90
182 183 5.458451 TTACAAATGGATGGTGGGATGTA 57.542 39.130 0.00 0.00 0.00 2.29
219 220 2.409570 TGTAGGAGAGATCGAGGGAGA 58.590 52.381 0.00 0.00 0.00 3.71
223 224 5.269505 ACAAATTGTAGGAGAGATCGAGG 57.730 43.478 0.00 0.00 0.00 4.63
253 254 4.223032 CCTAGTGTACAAGTGATGGAACCT 59.777 45.833 0.00 0.00 0.00 3.50
256 257 3.580895 TGCCTAGTGTACAAGTGATGGAA 59.419 43.478 0.00 0.00 0.00 3.53
258 259 3.262420 GTGCCTAGTGTACAAGTGATGG 58.738 50.000 0.00 0.00 0.00 3.51
260 261 3.578716 AGTGTGCCTAGTGTACAAGTGAT 59.421 43.478 0.00 0.00 41.47 3.06
261 262 2.963101 AGTGTGCCTAGTGTACAAGTGA 59.037 45.455 0.00 0.00 41.47 3.41
262 263 3.243737 TGAGTGTGCCTAGTGTACAAGTG 60.244 47.826 0.00 0.00 41.47 3.16
269 270 2.170607 AGTTGTTGAGTGTGCCTAGTGT 59.829 45.455 0.00 0.00 0.00 3.55
270 271 2.838736 AGTTGTTGAGTGTGCCTAGTG 58.161 47.619 0.00 0.00 0.00 2.74
271 272 3.560636 AAGTTGTTGAGTGTGCCTAGT 57.439 42.857 0.00 0.00 0.00 2.57
272 273 5.049405 CCTTTAAGTTGTTGAGTGTGCCTAG 60.049 44.000 0.00 0.00 0.00 3.02
273 274 4.819630 CCTTTAAGTTGTTGAGTGTGCCTA 59.180 41.667 0.00 0.00 0.00 3.93
274 275 3.632145 CCTTTAAGTTGTTGAGTGTGCCT 59.368 43.478 0.00 0.00 0.00 4.75
275 276 3.630312 TCCTTTAAGTTGTTGAGTGTGCC 59.370 43.478 0.00 0.00 0.00 5.01
276 277 4.789802 GCTCCTTTAAGTTGTTGAGTGTGC 60.790 45.833 0.00 0.00 0.00 4.57
277 278 4.576463 AGCTCCTTTAAGTTGTTGAGTGTG 59.424 41.667 0.00 0.00 0.00 3.82
278 279 4.781934 AGCTCCTTTAAGTTGTTGAGTGT 58.218 39.130 0.00 0.00 0.00 3.55
281 282 4.084328 CGTGAGCTCCTTTAAGTTGTTGAG 60.084 45.833 12.15 0.00 0.00 3.02
282 283 3.807622 CGTGAGCTCCTTTAAGTTGTTGA 59.192 43.478 12.15 0.00 0.00 3.18
283 284 3.560068 ACGTGAGCTCCTTTAAGTTGTTG 59.440 43.478 12.15 0.00 0.00 3.33
284 285 3.805207 ACGTGAGCTCCTTTAAGTTGTT 58.195 40.909 12.15 0.00 0.00 2.83
285 286 3.470645 ACGTGAGCTCCTTTAAGTTGT 57.529 42.857 12.15 0.00 0.00 3.32
287 288 4.451435 GCTTAACGTGAGCTCCTTTAAGTT 59.549 41.667 24.96 18.11 37.18 2.66
289 290 3.371285 GGCTTAACGTGAGCTCCTTTAAG 59.629 47.826 22.72 22.72 40.01 1.85
290 291 3.244284 TGGCTTAACGTGAGCTCCTTTAA 60.244 43.478 19.70 11.38 40.01 1.52
291 292 2.300723 TGGCTTAACGTGAGCTCCTTTA 59.699 45.455 19.70 4.34 40.01 1.85
292 293 1.071699 TGGCTTAACGTGAGCTCCTTT 59.928 47.619 19.70 5.31 40.01 3.11
293 294 0.685097 TGGCTTAACGTGAGCTCCTT 59.315 50.000 19.70 2.44 40.01 3.36
294 295 0.037232 GTGGCTTAACGTGAGCTCCT 60.037 55.000 19.70 0.00 40.01 3.69
295 296 0.320421 TGTGGCTTAACGTGAGCTCC 60.320 55.000 19.70 12.67 40.01 4.70
296 297 1.194772 GTTGTGGCTTAACGTGAGCTC 59.805 52.381 19.70 6.82 40.01 4.09
297 298 1.226746 GTTGTGGCTTAACGTGAGCT 58.773 50.000 19.70 0.00 40.01 4.09
298 299 0.941542 TGTTGTGGCTTAACGTGAGC 59.058 50.000 14.05 14.05 39.41 4.26
299 300 2.612212 AGTTGTTGTGGCTTAACGTGAG 59.388 45.455 0.00 0.00 0.00 3.51
300 301 2.634600 AGTTGTTGTGGCTTAACGTGA 58.365 42.857 0.00 0.00 0.00 4.35
301 302 3.414549 AAGTTGTTGTGGCTTAACGTG 57.585 42.857 0.00 0.00 0.00 4.49
302 303 4.912214 GTTAAGTTGTTGTGGCTTAACGT 58.088 39.130 9.62 0.00 42.17 3.99
309 310 2.134201 GCCAGTTAAGTTGTTGTGGC 57.866 50.000 0.00 0.00 43.43 5.01
319 320 2.509964 AGGAGGTATTGGGCCAGTTAAG 59.490 50.000 6.93 0.00 0.00 1.85
338 339 4.935808 ACTCGCCAGATTTAACAAACTAGG 59.064 41.667 0.00 0.00 0.00 3.02
347 348 8.973378 CAACAATTTTAAACTCGCCAGATTTAA 58.027 29.630 0.00 0.00 0.00 1.52
353 354 4.865776 TCCAACAATTTTAAACTCGCCAG 58.134 39.130 0.00 0.00 0.00 4.85
383 384 9.492730 AGGAATAGAACCCATGATTTTATTGTT 57.507 29.630 0.00 0.00 0.00 2.83
389 390 7.069950 GCCTTTAGGAATAGAACCCATGATTTT 59.930 37.037 0.00 0.00 37.39 1.82
390 391 6.551227 GCCTTTAGGAATAGAACCCATGATTT 59.449 38.462 0.00 0.00 37.39 2.17
392 393 5.134339 TGCCTTTAGGAATAGAACCCATGAT 59.866 40.000 0.00 0.00 37.39 2.45
394 395 4.792068 TGCCTTTAGGAATAGAACCCATG 58.208 43.478 0.00 0.00 37.39 3.66
396 397 5.200483 CAATGCCTTTAGGAATAGAACCCA 58.800 41.667 0.00 0.00 30.12 4.51
411 412 6.670695 AACTTGTTAGATTTCCAATGCCTT 57.329 33.333 0.00 0.00 0.00 4.35
413 414 7.826690 TCTAAACTTGTTAGATTTCCAATGCC 58.173 34.615 0.00 0.00 0.00 4.40
414 415 9.860898 ATTCTAAACTTGTTAGATTTCCAATGC 57.139 29.630 0.00 0.00 31.78 3.56
418 419 8.934023 ACCATTCTAAACTTGTTAGATTTCCA 57.066 30.769 0.00 0.00 31.78 3.53
442 443 8.621532 TGATTTGGTTGCTAGATATATCCAAC 57.378 34.615 18.01 18.01 34.01 3.77
449 450 5.957132 ACCCATGATTTGGTTGCTAGATAT 58.043 37.500 0.00 0.00 44.83 1.63
451 452 4.255510 ACCCATGATTTGGTTGCTAGAT 57.744 40.909 0.00 0.00 44.83 1.98
454 455 4.046286 AGAACCCATGATTTGGTTGCTA 57.954 40.909 8.62 0.00 44.70 3.49
456 457 5.343307 AATAGAACCCATGATTTGGTTGC 57.657 39.130 8.62 2.23 44.70 4.17
463 464 7.125391 TGCTTTTAGGAATAGAACCCATGATT 58.875 34.615 0.00 0.00 0.00 2.57
468 469 6.388689 TCCTATGCTTTTAGGAATAGAACCCA 59.611 38.462 7.82 0.00 43.78 4.51
479 480 9.178758 ACTTGTTAGATTTCCTATGCTTTTAGG 57.821 33.333 2.57 2.57 40.21 2.69
514 515 7.615403 TGATCTGGTTGCTAGATATATCCAAC 58.385 38.462 18.01 18.01 35.14 3.77
515 516 7.797121 TGATCTGGTTGCTAGATATATCCAA 57.203 36.000 9.18 4.22 35.14 3.53
521 522 4.848660 ACCCATGATCTGGTTGCTAGATAT 59.151 41.667 0.00 0.00 44.30 1.63
523 524 3.051581 ACCCATGATCTGGTTGCTAGAT 58.948 45.455 0.00 0.00 44.30 1.98
526 527 2.846206 AGAACCCATGATCTGGTTGCTA 59.154 45.455 16.31 0.00 44.70 3.49
528 529 2.134789 AGAACCCATGATCTGGTTGC 57.865 50.000 16.31 9.89 44.70 4.17
547 548 6.266131 AGATTTCCCATGCTGTTAGGAATA 57.734 37.500 0.46 0.00 38.17 1.75
551 552 5.684704 TCTTAGATTTCCCATGCTGTTAGG 58.315 41.667 0.00 0.00 0.00 2.69
554 555 5.574188 ACTTCTTAGATTTCCCATGCTGTT 58.426 37.500 0.00 0.00 0.00 3.16
555 556 5.184892 ACTTCTTAGATTTCCCATGCTGT 57.815 39.130 0.00 0.00 0.00 4.40
556 557 6.521151 AAACTTCTTAGATTTCCCATGCTG 57.479 37.500 0.00 0.00 0.00 4.41
590 591 9.082313 ACCACTCATTTGATTGTTAGAAAGATT 57.918 29.630 0.00 0.00 0.00 2.40
610 611 1.682323 GTCGAAGGGATAGGACCACTC 59.318 57.143 0.00 0.00 0.00 3.51
617 618 2.667470 TGAGAAGGTCGAAGGGATAGG 58.333 52.381 0.00 0.00 0.00 2.57
694 695 4.192317 CAAGTAATCCTAACTCTGGTGGC 58.808 47.826 0.00 0.00 0.00 5.01
711 712 8.774546 ATCCAGATATGAGAGAAGAACAAGTA 57.225 34.615 0.00 0.00 0.00 2.24
744 745 3.071874 TGCCTCCTACAAGTTGATTGG 57.928 47.619 10.54 8.36 43.68 3.16
752 753 2.044123 GGTGGAATGCCTCCTACAAG 57.956 55.000 3.26 0.00 45.64 3.16
761 762 2.050144 TCCTATCTCAGGTGGAATGCC 58.950 52.381 0.00 0.00 45.71 4.40
823 824 1.274167 TGTGGTATCCGTCCTGTCAAC 59.726 52.381 0.00 0.00 0.00 3.18
834 835 3.434940 ACCCAAGTTCTTGTGGTATCC 57.565 47.619 17.53 0.00 32.60 2.59
898 899 0.546507 TCACTGGGATGGCACCACTA 60.547 55.000 8.11 0.00 33.63 2.74
931 932 8.609176 TGATAAATTAGCTTAAGCAAACGGTAG 58.391 33.333 28.39 0.00 45.16 3.18
1085 1494 9.994432 CGAGAAAAGCAAGAATTATCATACTTT 57.006 29.630 0.00 0.00 0.00 2.66
1096 1511 2.229792 TGGTGCGAGAAAAGCAAGAAT 58.770 42.857 0.00 0.00 46.97 2.40
1108 1523 1.197721 AGCGAAAGAAAATGGTGCGAG 59.802 47.619 0.00 0.00 0.00 5.03
1122 1537 1.001378 GCTTTTGAGAGGCAAGCGAAA 60.001 47.619 0.00 0.00 37.87 3.46
1139 1554 1.909700 AACCACCGTGATGATTGCTT 58.090 45.000 0.00 0.00 0.00 3.91
1215 1630 8.924511 TCTTCCCATCAAAATTCCATATAGAC 57.075 34.615 0.00 0.00 0.00 2.59
1317 1732 5.578727 CGCTTCAAGCTCAACTTTATAGACT 59.421 40.000 8.02 0.00 39.60 3.24
1322 1737 2.749621 CCCGCTTCAAGCTCAACTTTAT 59.250 45.455 8.02 0.00 39.60 1.40
1340 1755 1.207089 TGACAGCAAAGATAGTCCCCG 59.793 52.381 0.00 0.00 0.00 5.73
1383 1798 1.425412 ATGTTGCCTCGTCGTTGTAC 58.575 50.000 0.00 0.00 0.00 2.90
1397 1812 4.408993 TCAATCTCAGCGTGAAATGTTG 57.591 40.909 0.00 0.00 35.15 3.33
1518 1933 7.765307 TCTCATGCAAAATGGAAGATAAACTC 58.235 34.615 0.00 0.00 0.00 3.01
1527 1942 6.409524 AGTTCTTTCTCATGCAAAATGGAA 57.590 33.333 0.00 0.00 0.00 3.53
1543 1958 4.867086 TCCAGGTCCTTTGAAAGTTCTTT 58.133 39.130 4.02 0.00 0.00 2.52
1552 1967 0.039618 GGCCAATCCAGGTCCTTTGA 59.960 55.000 0.00 0.00 34.01 2.69
1687 2102 7.964604 AGTCTGAGACGTAAGCTTTAAAATT 57.035 32.000 3.20 0.00 45.62 1.82
1701 2116 2.271800 GCCATACCAAAGTCTGAGACG 58.728 52.381 6.99 0.00 37.67 4.18
1731 2146 2.887152 CCAGCTTGAGTAACCAGCTTTT 59.113 45.455 0.00 0.00 33.09 2.27
1734 2149 1.277557 CTCCAGCTTGAGTAACCAGCT 59.722 52.381 6.65 0.00 36.12 4.24
1735 2150 1.731720 CTCCAGCTTGAGTAACCAGC 58.268 55.000 6.65 0.00 0.00 4.85
1736 2151 1.002430 TGCTCCAGCTTGAGTAACCAG 59.998 52.381 15.66 0.00 42.66 4.00
1928 2385 1.663388 CACGCCGAAGCTGTACACA 60.663 57.895 0.00 0.00 36.60 3.72
2013 2470 2.747855 GAACTTCCCCGGCTGCTG 60.748 66.667 0.26 0.26 0.00 4.41
2398 5045 6.737750 GCTAATTGCAAAAATCAAAATGTCGG 59.262 34.615 1.71 0.00 42.31 4.79
2537 5185 8.394877 TGACTACATACACTCAACAACAAAAAG 58.605 33.333 0.00 0.00 0.00 2.27
2859 5581 2.234296 CCTTCCTGTCCTGCCCCTT 61.234 63.158 0.00 0.00 0.00 3.95
2961 5697 5.460091 GTCCAAAATGTGAAGCTTCAGTTTC 59.540 40.000 29.13 17.45 37.98 2.78
2964 5700 3.003689 CGTCCAAAATGTGAAGCTTCAGT 59.996 43.478 29.13 17.78 37.98 3.41
2984 5728 2.224305 GGCATATCTAGAAGTTGGCCGT 60.224 50.000 12.65 0.00 0.00 5.68
3002 5746 1.199789 GAATGCAACACTTGATCGGCA 59.800 47.619 0.00 0.00 35.54 5.69
3048 5797 3.554324 GCTGAAATTATTGCTACGACGGA 59.446 43.478 0.00 0.00 0.00 4.69
3088 5837 1.078497 TCGTGGGAAATGCAGCGAT 60.078 52.632 0.00 0.00 0.00 4.58
3103 5852 0.811915 AGCTGCTCGTAGAATGTCGT 59.188 50.000 0.00 0.00 34.09 4.34
3110 5859 1.086067 GCAATGCAGCTGCTCGTAGA 61.086 55.000 36.61 18.16 42.66 2.59
3163 5912 2.334977 ACAGGTACTTGGACATGGTCA 58.665 47.619 10.04 0.00 34.60 4.02
3184 5933 2.357637 CGGTGTTTCTTCATGTGGTTGT 59.642 45.455 0.00 0.00 0.00 3.32
3202 5955 0.323629 TCGAAAGGCCAAAGATCGGT 59.676 50.000 5.01 0.00 34.47 4.69
3206 5959 5.010282 AGTATGTTTCGAAAGGCCAAAGAT 58.990 37.500 11.66 2.77 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.