Multiple sequence alignment - TraesCS1D01G050200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G050200 chr1D 100.000 3454 0 0 1 3454 30316798 30320251 0.000000e+00 6379.0
1 TraesCS1D01G050200 chr1D 92.934 467 26 4 1913 2377 340669137 340668676 0.000000e+00 673.0
2 TraesCS1D01G050200 chr1D 85.855 608 35 6 1963 2541 47854718 47855303 1.770000e-167 599.0
3 TraesCS1D01G050200 chr1D 83.721 215 31 2 972 1183 30372633 30372846 2.100000e-47 200.0
4 TraesCS1D01G050200 chr1D 78.992 238 39 6 962 1191 30294343 30294577 5.970000e-33 152.0
5 TraesCS1D01G050200 chr7B 90.095 737 53 8 2722 3454 622975823 622975103 0.000000e+00 939.0
6 TraesCS1D01G050200 chr7B 79.847 655 92 30 2546 3178 645540730 645541366 3.160000e-120 442.0
7 TraesCS1D01G050200 chr1A 89.358 639 47 6 1918 2541 20899141 20899773 0.000000e+00 784.0
8 TraesCS1D01G050200 chr1A 91.242 491 41 2 2776 3265 64545053 64545542 0.000000e+00 667.0
9 TraesCS1D01G050200 chr1A 88.969 553 42 8 1375 1915 30550197 30550742 0.000000e+00 665.0
10 TraesCS1D01G050200 chr1A 93.284 268 11 1 967 1227 30549932 30550199 4.180000e-104 388.0
11 TraesCS1D01G050200 chr1A 89.172 314 16 4 638 933 30547564 30547877 3.250000e-100 375.0
12 TraesCS1D01G050200 chr1A 90.066 151 15 0 3087 3237 74754968 74754818 2.720000e-46 196.0
13 TraesCS1D01G050200 chr1A 90.066 151 15 0 3087 3237 446716845 446716695 2.720000e-46 196.0
14 TraesCS1D01G050200 chr2B 88.991 654 42 9 1914 2541 651356881 651356232 0.000000e+00 782.0
15 TraesCS1D01G050200 chr2B 87.596 653 46 16 1918 2541 168864806 168864160 0.000000e+00 725.0
16 TraesCS1D01G050200 chr2B 91.242 491 41 2 2776 3265 292814276 292814765 0.000000e+00 667.0
17 TraesCS1D01G050200 chr2B 80.419 669 90 20 2544 3188 153608414 153607763 4.040000e-129 472.0
18 TraesCS1D01G050200 chr2B 87.963 108 13 0 3270 3377 402542296 402542189 1.010000e-25 128.0
19 TraesCS1D01G050200 chr5D 88.991 654 41 10 1913 2541 395297110 395296463 0.000000e+00 780.0
20 TraesCS1D01G050200 chr5D 93.421 456 23 4 1923 2377 433531675 433532124 0.000000e+00 669.0
21 TraesCS1D01G050200 chr5D 92.489 466 29 3 1913 2377 111943582 111943122 0.000000e+00 662.0
22 TraesCS1D01G050200 chr5D 86.505 289 32 5 2544 2831 550473559 550473277 9.310000e-81 311.0
23 TraesCS1D01G050200 chr7D 88.647 643 42 3 1925 2541 204618768 204619405 0.000000e+00 754.0
24 TraesCS1D01G050200 chr3D 87.692 650 46 6 1919 2541 440700287 440700929 0.000000e+00 726.0
25 TraesCS1D01G050200 chr3D 93.103 464 24 4 1912 2373 448746199 448746656 0.000000e+00 673.0
26 TraesCS1D01G050200 chr3D 91.772 474 28 7 1907 2377 581001419 581000954 0.000000e+00 649.0
27 TraesCS1D01G050200 chr4A 86.858 662 46 10 1915 2541 375772241 375772896 0.000000e+00 702.0
28 TraesCS1D01G050200 chr4A 91.713 181 15 0 3272 3452 720748808 720748628 5.720000e-63 252.0
29 TraesCS1D01G050200 chr4D 86.778 658 51 17 1913 2541 150906420 150905770 0.000000e+00 701.0
30 TraesCS1D01G050200 chr4D 92.258 465 29 4 1914 2377 391833420 391832962 0.000000e+00 652.0
31 TraesCS1D01G050200 chr4D 92.408 461 29 3 1918 2377 413046389 413045934 0.000000e+00 652.0
32 TraesCS1D01G050200 chr1B 88.601 579 54 10 2692 3265 39389335 39388764 0.000000e+00 693.0
33 TraesCS1D01G050200 chr1B 91.242 491 41 2 2776 3265 325322588 325323077 0.000000e+00 667.0
34 TraesCS1D01G050200 chr1B 85.017 287 36 5 2546 2831 153426184 153425904 5.640000e-73 285.0
35 TraesCS1D01G050200 chr1B 77.621 496 91 13 972 1453 49640390 49640879 2.030000e-72 283.0
36 TraesCS1D01G050200 chr1B 75.720 486 93 16 992 1469 49525169 49525637 1.610000e-53 220.0
37 TraesCS1D01G050200 chr1B 90.667 150 14 0 3087 3236 4984848 4984997 2.100000e-47 200.0
38 TraesCS1D01G050200 chr6A 87.543 578 63 8 2692 3265 12370160 12369588 0.000000e+00 660.0
39 TraesCS1D01G050200 chr6A 85.567 291 33 8 2544 2831 16125319 16125603 2.610000e-76 296.0
40 TraesCS1D01G050200 chr6A 91.713 181 15 0 3272 3452 606039552 606039372 5.720000e-63 252.0
41 TraesCS1D01G050200 chr6A 89.404 151 16 0 3087 3237 317609144 317608994 1.270000e-44 191.0
42 TraesCS1D01G050200 chr5A 90.224 491 45 3 2776 3265 398890996 398891484 3.760000e-179 638.0
43 TraesCS1D01G050200 chr5A 89.944 179 18 0 3274 3452 229496069 229495891 7.460000e-57 231.0
44 TraesCS1D01G050200 chr3B 88.276 290 26 7 2544 2831 431147931 431148214 1.190000e-89 340.0
45 TraesCS1D01G050200 chr3B 83.791 364 46 8 2546 2906 821829395 821829748 1.990000e-87 333.0
46 TraesCS1D01G050200 chr3B 82.597 362 51 10 2544 2903 185389005 185389356 3.350000e-80 309.0
47 TraesCS1D01G050200 chr3B 84.912 285 17 11 2283 2541 431150726 431151010 7.350000e-67 265.0
48 TraesCS1D01G050200 chr3B 89.286 56 4 1 2908 2963 558377745 558377692 6.190000e-08 69.4
49 TraesCS1D01G050200 chr6B 87.931 290 27 6 2544 2831 463406144 463406427 5.520000e-88 335.0
50 TraesCS1D01G050200 chr6B 79.055 487 67 20 2274 2728 661065453 661065936 5.600000e-78 302.0
51 TraesCS1D01G050200 chr6B 92.000 200 14 1 3038 3235 528085920 528085721 2.620000e-71 279.0
52 TraesCS1D01G050200 chrUn 85.333 150 19 3 3096 3243 375150467 375150319 5.970000e-33 152.0
53 TraesCS1D01G050200 chr7A 80.357 168 18 9 2928 3094 33565027 33565180 2.820000e-21 113.0
54 TraesCS1D01G050200 chr4B 88.333 60 4 2 2908 2967 1878656 1878712 6.190000e-08 69.4
55 TraesCS1D01G050200 chr3A 89.286 56 4 1 2908 2963 95563001 95562948 6.190000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G050200 chr1D 30316798 30320251 3453 False 6379.0 6379 100.000 1 3454 1 chr1D.!!$F2 3453
1 TraesCS1D01G050200 chr1D 47854718 47855303 585 False 599.0 599 85.855 1963 2541 1 chr1D.!!$F4 578
2 TraesCS1D01G050200 chr7B 622975103 622975823 720 True 939.0 939 90.095 2722 3454 1 chr7B.!!$R1 732
3 TraesCS1D01G050200 chr7B 645540730 645541366 636 False 442.0 442 79.847 2546 3178 1 chr7B.!!$F1 632
4 TraesCS1D01G050200 chr1A 20899141 20899773 632 False 784.0 784 89.358 1918 2541 1 chr1A.!!$F1 623
5 TraesCS1D01G050200 chr1A 30547564 30550742 3178 False 476.0 665 90.475 638 1915 3 chr1A.!!$F3 1277
6 TraesCS1D01G050200 chr2B 651356232 651356881 649 True 782.0 782 88.991 1914 2541 1 chr2B.!!$R4 627
7 TraesCS1D01G050200 chr2B 168864160 168864806 646 True 725.0 725 87.596 1918 2541 1 chr2B.!!$R2 623
8 TraesCS1D01G050200 chr2B 153607763 153608414 651 True 472.0 472 80.419 2544 3188 1 chr2B.!!$R1 644
9 TraesCS1D01G050200 chr5D 395296463 395297110 647 True 780.0 780 88.991 1913 2541 1 chr5D.!!$R2 628
10 TraesCS1D01G050200 chr7D 204618768 204619405 637 False 754.0 754 88.647 1925 2541 1 chr7D.!!$F1 616
11 TraesCS1D01G050200 chr3D 440700287 440700929 642 False 726.0 726 87.692 1919 2541 1 chr3D.!!$F1 622
12 TraesCS1D01G050200 chr4A 375772241 375772896 655 False 702.0 702 86.858 1915 2541 1 chr4A.!!$F1 626
13 TraesCS1D01G050200 chr4D 150905770 150906420 650 True 701.0 701 86.778 1913 2541 1 chr4D.!!$R1 628
14 TraesCS1D01G050200 chr1B 39388764 39389335 571 True 693.0 693 88.601 2692 3265 1 chr1B.!!$R1 573
15 TraesCS1D01G050200 chr6A 12369588 12370160 572 True 660.0 660 87.543 2692 3265 1 chr6A.!!$R1 573
16 TraesCS1D01G050200 chr3B 431147931 431151010 3079 False 302.5 340 86.594 2283 2831 2 chr3B.!!$F3 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 550 0.030705 ATAGAGGGAGCTTGAGGGCA 60.031 55.0 0.00 0.0 34.17 5.36 F
938 957 0.042188 CACGCGTTTTCACTGTCTGG 60.042 55.0 10.22 0.0 0.00 3.86 F
1425 3472 0.038166 TGTCCTCCAATGGCCTGAAC 59.962 55.0 3.32 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 3431 0.108804 TTCAAGTAAGCGAGCTCGGG 60.109 55.0 35.10 11.31 40.23 5.14 R
1952 4011 0.164217 TTACAAATTGTCGCGACGGC 59.836 50.0 31.88 11.57 0.00 5.68 R
3377 5570 0.824109 TCCAACTCCGATGCCTGTAG 59.176 55.0 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.984241 GAGCACGAACTCGATCCG 58.016 61.111 6.05 0.00 43.02 4.18
32 33 2.202623 GCACGAACTCGATCCGCT 60.203 61.111 6.05 0.00 43.02 5.52
33 34 1.805945 GCACGAACTCGATCCGCTT 60.806 57.895 6.05 0.00 43.02 4.68
34 35 1.991430 CACGAACTCGATCCGCTTG 59.009 57.895 6.05 0.00 43.02 4.01
35 36 0.456142 CACGAACTCGATCCGCTTGA 60.456 55.000 6.05 0.00 43.02 3.02
36 37 0.456221 ACGAACTCGATCCGCTTGAT 59.544 50.000 6.05 0.00 43.02 2.57
37 38 1.674441 ACGAACTCGATCCGCTTGATA 59.326 47.619 6.05 0.00 43.02 2.15
38 39 2.044860 CGAACTCGATCCGCTTGATAC 58.955 52.381 0.00 0.00 43.02 2.24
39 40 2.540973 CGAACTCGATCCGCTTGATACA 60.541 50.000 0.00 0.00 43.02 2.29
40 41 3.444916 GAACTCGATCCGCTTGATACAA 58.555 45.455 0.00 0.00 32.41 2.41
41 42 3.735237 ACTCGATCCGCTTGATACAAT 57.265 42.857 0.00 0.00 32.41 2.71
42 43 4.848562 ACTCGATCCGCTTGATACAATA 57.151 40.909 0.00 0.00 32.41 1.90
43 44 4.547532 ACTCGATCCGCTTGATACAATAC 58.452 43.478 0.00 0.00 32.41 1.89
45 46 4.295870 TCGATCCGCTTGATACAATACAC 58.704 43.478 0.00 0.00 32.41 2.90
46 47 4.048504 CGATCCGCTTGATACAATACACA 58.951 43.478 0.00 0.00 32.41 3.72
47 48 4.148871 CGATCCGCTTGATACAATACACAG 59.851 45.833 0.00 0.00 32.41 3.66
49 50 5.079689 TCCGCTTGATACAATACACAGAA 57.920 39.130 0.00 0.00 0.00 3.02
51 52 4.271049 CCGCTTGATACAATACACAGAAGG 59.729 45.833 0.00 0.00 0.00 3.46
52 53 4.271049 CGCTTGATACAATACACAGAAGGG 59.729 45.833 0.00 0.00 0.00 3.95
54 55 5.525378 GCTTGATACAATACACAGAAGGGAG 59.475 44.000 0.00 0.00 0.00 4.30
55 56 6.630413 GCTTGATACAATACACAGAAGGGAGA 60.630 42.308 0.00 0.00 0.00 3.71
56 57 6.471233 TGATACAATACACAGAAGGGAGAG 57.529 41.667 0.00 0.00 0.00 3.20
59 60 3.107601 CAATACACAGAAGGGAGAGGGA 58.892 50.000 0.00 0.00 0.00 4.20
60 61 2.233305 TACACAGAAGGGAGAGGGAC 57.767 55.000 0.00 0.00 0.00 4.46
62 63 1.132689 ACACAGAAGGGAGAGGGACTT 60.133 52.381 0.00 0.00 41.55 3.01
64 65 3.246167 ACACAGAAGGGAGAGGGACTTAT 60.246 47.826 0.00 0.00 41.55 1.73
66 67 4.342665 CACAGAAGGGAGAGGGACTTATAC 59.657 50.000 0.00 0.00 41.55 1.47
67 68 3.570550 CAGAAGGGAGAGGGACTTATACG 59.429 52.174 0.00 0.00 41.55 3.06
68 69 1.998222 AGGGAGAGGGACTTATACGC 58.002 55.000 0.00 0.00 41.55 4.42
69 70 0.597072 GGGAGAGGGACTTATACGCG 59.403 60.000 3.53 3.53 41.55 6.01
70 71 0.039346 GGAGAGGGACTTATACGCGC 60.039 60.000 5.73 0.00 41.55 6.86
72 73 2.015090 GAGGGACTTATACGCGCGC 61.015 63.158 32.58 23.91 41.55 6.86
109 110 4.738998 CGCTCCCAATGCACCCCA 62.739 66.667 0.00 0.00 0.00 4.96
112 113 1.379044 CTCCCAATGCACCCCACTC 60.379 63.158 0.00 0.00 0.00 3.51
114 115 3.443045 CCAATGCACCCCACTCGC 61.443 66.667 0.00 0.00 0.00 5.03
115 116 2.672651 CAATGCACCCCACTCGCA 60.673 61.111 0.00 0.00 40.50 5.10
116 117 2.672996 AATGCACCCCACTCGCAC 60.673 61.111 0.00 0.00 38.73 5.34
117 118 3.490031 AATGCACCCCACTCGCACA 62.490 57.895 0.00 0.00 38.73 4.57
118 119 4.927782 TGCACCCCACTCGCACAC 62.928 66.667 0.00 0.00 0.00 3.82
120 121 2.357517 CACCCCACTCGCACACTC 60.358 66.667 0.00 0.00 0.00 3.51
124 125 4.662961 CCACTCGCACACTCGCCA 62.663 66.667 0.00 0.00 0.00 5.69
126 127 2.433145 ACTCGCACACTCGCCATG 60.433 61.111 0.00 0.00 0.00 3.66
127 128 2.433145 CTCGCACACTCGCCATGT 60.433 61.111 0.00 0.00 0.00 3.21
128 129 2.432456 TCGCACACTCGCCATGTC 60.432 61.111 0.00 0.00 0.00 3.06
129 130 3.490759 CGCACACTCGCCATGTCC 61.491 66.667 0.00 0.00 0.00 4.02
130 131 3.490759 GCACACTCGCCATGTCCG 61.491 66.667 0.00 0.00 0.00 4.79
131 132 2.261361 CACACTCGCCATGTCCGA 59.739 61.111 5.72 5.72 0.00 4.55
135 136 2.279120 CTCGCCATGTCCGAGCTC 60.279 66.667 16.70 2.73 44.53 4.09
136 137 3.781770 CTCGCCATGTCCGAGCTCC 62.782 68.421 16.70 0.00 44.53 4.70
137 138 4.147449 CGCCATGTCCGAGCTCCA 62.147 66.667 8.47 0.17 0.00 3.86
138 139 2.512515 GCCATGTCCGAGCTCCAC 60.513 66.667 8.47 5.81 0.00 4.02
139 140 2.202797 CCATGTCCGAGCTCCACG 60.203 66.667 8.47 0.00 0.00 4.94
140 141 2.887568 CATGTCCGAGCTCCACGC 60.888 66.667 8.47 0.00 39.57 5.34
141 142 3.381983 ATGTCCGAGCTCCACGCA 61.382 61.111 8.47 2.78 42.61 5.24
142 143 3.649277 ATGTCCGAGCTCCACGCAC 62.649 63.158 8.47 0.00 42.61 5.34
143 144 4.357947 GTCCGAGCTCCACGCACA 62.358 66.667 8.47 0.00 42.61 4.57
144 145 4.357947 TCCGAGCTCCACGCACAC 62.358 66.667 8.47 0.00 42.61 3.82
167 168 4.430765 CGCTTGACGCTACCGGGT 62.431 66.667 6.32 4.46 39.22 5.28
172 173 4.509737 GACGCTACCGGGTCCAGC 62.510 72.222 6.32 7.49 44.68 4.85
190 191 2.048127 GCCCTGACACGGTCACTC 60.048 66.667 3.02 0.00 37.67 3.51
191 192 2.657237 CCCTGACACGGTCACTCC 59.343 66.667 3.02 0.00 37.67 3.85
193 194 1.587054 CCTGACACGGTCACTCCTC 59.413 63.158 3.02 0.00 37.67 3.71
194 195 1.587054 CTGACACGGTCACTCCTCC 59.413 63.158 3.02 0.00 37.67 4.30
199 200 2.439701 CGGTCACTCCTCCGCCTA 60.440 66.667 0.00 0.00 40.28 3.93
200 201 1.828660 CGGTCACTCCTCCGCCTAT 60.829 63.158 0.00 0.00 40.28 2.57
202 203 0.105039 GGTCACTCCTCCGCCTATTG 59.895 60.000 0.00 0.00 0.00 1.90
204 205 0.975556 TCACTCCTCCGCCTATTGCA 60.976 55.000 0.00 0.00 41.33 4.08
205 206 0.811616 CACTCCTCCGCCTATTGCAC 60.812 60.000 0.00 0.00 41.33 4.57
206 207 1.227674 CTCCTCCGCCTATTGCACC 60.228 63.158 0.00 0.00 41.33 5.01
207 208 1.971505 CTCCTCCGCCTATTGCACCA 61.972 60.000 0.00 0.00 41.33 4.17
208 209 1.077787 CCTCCGCCTATTGCACCAA 60.078 57.895 0.00 0.00 41.33 3.67
210 211 0.676466 CTCCGCCTATTGCACCAACA 60.676 55.000 0.00 0.00 41.33 3.33
211 212 0.250945 TCCGCCTATTGCACCAACAA 60.251 50.000 0.00 0.00 41.33 2.83
212 213 0.600557 CCGCCTATTGCACCAACAAA 59.399 50.000 0.00 0.00 41.33 2.83
213 214 1.668628 CCGCCTATTGCACCAACAAAC 60.669 52.381 0.00 0.00 41.33 2.93
214 215 1.000827 CGCCTATTGCACCAACAAACA 60.001 47.619 0.00 0.00 41.33 2.83
215 216 2.403259 GCCTATTGCACCAACAAACAC 58.597 47.619 0.00 0.00 40.77 3.32
216 217 2.223923 GCCTATTGCACCAACAAACACA 60.224 45.455 0.00 0.00 40.77 3.72
219 220 0.247736 TTGCACCAACAAACACACCC 59.752 50.000 0.00 0.00 0.00 4.61
220 221 0.900182 TGCACCAACAAACACACCCA 60.900 50.000 0.00 0.00 0.00 4.51
221 222 0.459411 GCACCAACAAACACACCCAC 60.459 55.000 0.00 0.00 0.00 4.61
227 228 2.831284 AAACACACCCACGCACCC 60.831 61.111 0.00 0.00 0.00 4.61
229 230 4.868116 ACACACCCACGCACCCAC 62.868 66.667 0.00 0.00 0.00 4.61
251 252 4.012895 CCACGCACGCAAGGACAC 62.013 66.667 0.00 0.00 46.39 3.67
254 255 4.354212 CGCACGCAAGGACACACG 62.354 66.667 0.00 0.00 46.39 4.49
255 256 4.666532 GCACGCAAGGACACACGC 62.667 66.667 0.00 0.00 46.39 5.34
256 257 3.268603 CACGCAAGGACACACGCA 61.269 61.111 0.00 0.00 46.39 5.24
257 258 3.269347 ACGCAAGGACACACGCAC 61.269 61.111 0.00 0.00 46.39 5.34
259 260 2.327940 GCAAGGACACACGCACAC 59.672 61.111 0.00 0.00 0.00 3.82
260 261 2.468670 GCAAGGACACACGCACACA 61.469 57.895 0.00 0.00 0.00 3.72
263 264 1.366111 AAGGACACACGCACACACAC 61.366 55.000 0.00 0.00 0.00 3.82
264 265 2.319707 GACACACGCACACACACG 59.680 61.111 0.00 0.00 0.00 4.49
290 291 4.379243 CTGCACGGACCGCTCCTT 62.379 66.667 15.39 0.00 33.79 3.36
291 292 4.680237 TGCACGGACCGCTCCTTG 62.680 66.667 15.39 5.34 38.60 3.61
293 294 4.680237 CACGGACCGCTCCTTGCA 62.680 66.667 15.39 0.00 43.06 4.08
295 296 4.680237 CGGACCGCTCCTTGCACA 62.680 66.667 0.00 0.00 43.06 4.57
296 297 3.050275 GGACCGCTCCTTGCACAC 61.050 66.667 0.00 0.00 43.06 3.82
297 298 2.280797 GACCGCTCCTTGCACACA 60.281 61.111 0.00 0.00 43.06 3.72
298 299 2.591715 ACCGCTCCTTGCACACAC 60.592 61.111 0.00 0.00 43.06 3.82
299 300 3.716006 CCGCTCCTTGCACACACG 61.716 66.667 0.00 0.00 43.06 4.49
300 301 4.374702 CGCTCCTTGCACACACGC 62.375 66.667 0.00 0.00 43.06 5.34
301 302 3.279116 GCTCCTTGCACACACGCA 61.279 61.111 0.00 0.00 42.31 5.24
302 303 2.633657 CTCCTTGCACACACGCAC 59.366 61.111 0.00 0.00 42.87 5.34
303 304 3.227372 CTCCTTGCACACACGCACG 62.227 63.158 0.00 0.00 42.87 5.34
305 306 4.962122 CTTGCACACACGCACGCC 62.962 66.667 0.00 0.00 42.87 5.68
337 338 4.120085 CGGTCACGGCTTATTCCC 57.880 61.111 0.00 0.00 36.18 3.97
338 339 1.219664 CGGTCACGGCTTATTCCCA 59.780 57.895 0.00 0.00 36.18 4.37
339 340 0.391927 CGGTCACGGCTTATTCCCAA 60.392 55.000 0.00 0.00 36.18 4.12
340 341 1.745827 CGGTCACGGCTTATTCCCAAT 60.746 52.381 0.00 0.00 36.18 3.16
341 342 2.484065 CGGTCACGGCTTATTCCCAATA 60.484 50.000 0.00 0.00 36.18 1.90
342 343 3.139077 GGTCACGGCTTATTCCCAATAG 58.861 50.000 0.00 0.00 0.00 1.73
343 344 3.181458 GGTCACGGCTTATTCCCAATAGA 60.181 47.826 0.00 0.00 0.00 1.98
344 345 3.808174 GTCACGGCTTATTCCCAATAGAC 59.192 47.826 0.00 0.00 0.00 2.59
345 346 2.800544 CACGGCTTATTCCCAATAGACG 59.199 50.000 0.00 0.00 32.75 4.18
347 348 2.152016 GGCTTATTCCCAATAGACGGC 58.848 52.381 0.00 0.00 0.00 5.68
350 351 0.034337 TATTCCCAATAGACGGCGGC 59.966 55.000 13.24 8.92 0.00 6.53
351 352 1.978455 ATTCCCAATAGACGGCGGCA 61.978 55.000 18.30 0.18 0.00 5.69
352 353 2.124901 CCCAATAGACGGCGGCAA 60.125 61.111 18.30 0.00 0.00 4.52
353 354 2.469516 CCCAATAGACGGCGGCAAC 61.470 63.158 18.30 1.04 0.00 4.17
376 377 4.024698 CAGCCGATGCAGTAGCTC 57.975 61.111 4.30 0.00 42.74 4.09
377 378 1.948138 CAGCCGATGCAGTAGCTCG 60.948 63.158 4.30 2.05 42.74 5.03
378 379 2.121538 AGCCGATGCAGTAGCTCGA 61.122 57.895 8.18 0.00 41.02 4.04
379 380 1.659954 GCCGATGCAGTAGCTCGAG 60.660 63.158 8.45 8.45 41.02 4.04
380 381 1.007964 CCGATGCAGTAGCTCGAGG 60.008 63.158 15.58 0.00 41.02 4.63
382 383 0.040514 CGATGCAGTAGCTCGAGGAG 60.041 60.000 15.58 0.00 41.02 3.69
391 392 2.407210 CTCGAGGAGCAGCGAGTC 59.593 66.667 3.91 0.00 46.43 3.36
392 393 3.447634 CTCGAGGAGCAGCGAGTCG 62.448 68.421 8.54 8.54 46.43 4.18
393 394 3.805307 CGAGGAGCAGCGAGTCGT 61.805 66.667 15.08 0.00 0.00 4.34
395 396 1.515304 GAGGAGCAGCGAGTCGTTC 60.515 63.158 15.08 7.11 0.00 3.95
397 398 1.803519 GGAGCAGCGAGTCGTTCTG 60.804 63.158 15.08 14.34 0.00 3.02
399 400 3.482783 GCAGCGAGTCGTTCTGCC 61.483 66.667 25.65 13.31 45.34 4.85
400 401 2.811317 CAGCGAGTCGTTCTGCCC 60.811 66.667 15.08 0.00 0.00 5.36
401 402 4.421479 AGCGAGTCGTTCTGCCCG 62.421 66.667 15.08 0.00 0.00 6.13
405 406 4.719369 AGTCGTTCTGCCCGCGTC 62.719 66.667 4.92 0.00 0.00 5.19
412 413 4.394712 CTGCCCGCGTCCTCCTTT 62.395 66.667 4.92 0.00 0.00 3.11
413 414 4.697756 TGCCCGCGTCCTCCTTTG 62.698 66.667 4.92 0.00 0.00 2.77
416 417 2.815647 CCGCGTCCTCCTTTGCTC 60.816 66.667 4.92 0.00 0.00 4.26
417 418 2.262915 CGCGTCCTCCTTTGCTCT 59.737 61.111 0.00 0.00 0.00 4.09
418 419 2.097038 CGCGTCCTCCTTTGCTCTG 61.097 63.158 0.00 0.00 0.00 3.35
421 422 1.294659 CGTCCTCCTTTGCTCTGCAC 61.295 60.000 0.00 0.00 38.71 4.57
422 423 0.250467 GTCCTCCTTTGCTCTGCACA 60.250 55.000 0.00 0.00 38.71 4.57
423 424 0.250467 TCCTCCTTTGCTCTGCACAC 60.250 55.000 0.00 0.00 38.71 3.82
424 425 1.572085 CCTCCTTTGCTCTGCACACG 61.572 60.000 0.00 0.00 38.71 4.49
425 426 0.882042 CTCCTTTGCTCTGCACACGT 60.882 55.000 0.00 0.00 38.71 4.49
426 427 1.159713 TCCTTTGCTCTGCACACGTG 61.160 55.000 15.48 15.48 38.71 4.49
460 461 2.043652 CCAGACATTGGGCCCCAG 60.044 66.667 22.27 11.84 43.75 4.45
461 462 2.615465 CCAGACATTGGGCCCCAGA 61.615 63.158 22.27 5.54 43.75 3.86
462 463 1.379044 CAGACATTGGGCCCCAGAC 60.379 63.158 22.27 9.47 33.81 3.51
463 464 2.438434 GACATTGGGCCCCAGACG 60.438 66.667 22.27 5.72 33.81 4.18
464 465 4.740822 ACATTGGGCCCCAGACGC 62.741 66.667 22.27 0.00 33.81 5.19
485 486 3.361443 GCTCCGTTGCGTTACAAAG 57.639 52.632 0.00 0.00 40.82 2.77
490 491 2.309898 CGTTGCGTTACAAAGGAAGG 57.690 50.000 0.00 0.00 40.82 3.46
491 492 1.662026 CGTTGCGTTACAAAGGAAGGC 60.662 52.381 0.00 0.00 40.82 4.35
492 493 0.589223 TTGCGTTACAAAGGAAGGCG 59.411 50.000 2.68 0.00 39.86 5.52
493 494 1.154282 GCGTTACAAAGGAAGGCGC 60.154 57.895 0.00 0.00 36.75 6.53
494 495 1.131826 CGTTACAAAGGAAGGCGCG 59.868 57.895 0.00 0.00 0.00 6.86
495 496 1.286354 CGTTACAAAGGAAGGCGCGA 61.286 55.000 12.10 0.00 0.00 5.87
496 497 0.165295 GTTACAAAGGAAGGCGCGAC 59.835 55.000 12.10 7.34 0.00 5.19
497 498 1.286354 TTACAAAGGAAGGCGCGACG 61.286 55.000 12.10 0.00 0.00 5.12
511 512 2.049985 GACGCTGACGCAGTGAGT 60.050 61.111 21.62 0.00 45.56 3.41
512 513 2.049985 ACGCTGACGCAGTGAGTC 60.050 61.111 18.94 18.94 45.56 3.36
513 514 3.168604 CGCTGACGCAGTGAGTCG 61.169 66.667 20.11 15.70 45.56 4.18
514 515 2.255554 GCTGACGCAGTGAGTCGA 59.744 61.111 20.11 9.91 45.56 4.20
515 516 1.799519 GCTGACGCAGTGAGTCGAG 60.800 63.158 20.11 17.98 45.56 4.04
520 521 4.427661 GCAGTGAGTCGAGCGCCT 62.428 66.667 2.29 0.00 0.00 5.52
522 523 2.091112 CAGTGAGTCGAGCGCCTTG 61.091 63.158 2.29 0.00 0.00 3.61
523 524 2.258591 GTGAGTCGAGCGCCTTGA 59.741 61.111 2.29 0.00 0.00 3.02
524 525 2.089349 GTGAGTCGAGCGCCTTGAC 61.089 63.158 14.36 14.36 43.25 3.18
525 526 2.876645 GAGTCGAGCGCCTTGACG 60.877 66.667 2.29 2.79 46.37 4.35
528 529 4.415332 TCGAGCGCCTTGACGACC 62.415 66.667 2.29 0.00 34.06 4.79
532 533 2.103538 GCGCCTTGACGACCGATA 59.896 61.111 0.00 0.00 34.06 2.92
534 535 1.725665 CGCCTTGACGACCGATAGA 59.274 57.895 0.00 0.00 33.70 1.98
535 536 0.317103 CGCCTTGACGACCGATAGAG 60.317 60.000 0.00 0.00 33.70 2.43
536 537 0.030908 GCCTTGACGACCGATAGAGG 59.969 60.000 0.00 0.00 39.76 3.69
537 538 0.669077 CCTTGACGACCGATAGAGGG 59.331 60.000 0.00 0.00 39.76 4.30
538 539 1.676746 CTTGACGACCGATAGAGGGA 58.323 55.000 0.00 0.00 39.76 4.20
539 540 1.604755 CTTGACGACCGATAGAGGGAG 59.395 57.143 0.00 0.00 39.76 4.30
540 541 0.818445 TGACGACCGATAGAGGGAGC 60.818 60.000 0.00 0.00 39.76 4.70
541 542 0.535553 GACGACCGATAGAGGGAGCT 60.536 60.000 0.00 0.00 39.76 4.09
542 543 0.106619 ACGACCGATAGAGGGAGCTT 60.107 55.000 0.00 0.00 39.76 3.74
543 544 0.312416 CGACCGATAGAGGGAGCTTG 59.688 60.000 0.00 0.00 39.76 4.01
544 545 1.693627 GACCGATAGAGGGAGCTTGA 58.306 55.000 0.00 0.00 39.76 3.02
545 546 1.611491 GACCGATAGAGGGAGCTTGAG 59.389 57.143 0.00 0.00 39.76 3.02
546 547 0.965439 CCGATAGAGGGAGCTTGAGG 59.035 60.000 0.00 0.00 39.76 3.86
547 548 0.965439 CGATAGAGGGAGCTTGAGGG 59.035 60.000 0.00 0.00 39.76 4.30
549 550 0.030705 ATAGAGGGAGCTTGAGGGCA 60.031 55.000 0.00 0.00 34.17 5.36
550 551 0.689080 TAGAGGGAGCTTGAGGGCAG 60.689 60.000 0.00 0.00 34.17 4.85
552 553 4.811364 GGGAGCTTGAGGGCAGCC 62.811 72.222 1.26 1.26 34.17 4.85
554 555 2.274760 GAGCTTGAGGGCAGCCAT 59.725 61.111 15.19 5.81 34.17 4.40
555 556 2.044252 AGCTTGAGGGCAGCCATG 60.044 61.111 15.19 0.00 34.17 3.66
556 557 3.145551 GCTTGAGGGCAGCCATGG 61.146 66.667 15.19 7.63 0.00 3.66
574 575 4.508128 CGTAGGCGGTGATGGCGT 62.508 66.667 0.00 0.00 39.82 5.68
576 577 3.845259 TAGGCGGTGATGGCGTCC 61.845 66.667 3.88 0.00 39.82 4.79
581 582 2.746277 GGTGATGGCGTCCACCAC 60.746 66.667 13.25 13.25 46.88 4.16
582 583 2.031919 GTGATGGCGTCCACCACA 59.968 61.111 15.87 7.85 46.82 4.17
583 584 2.031919 TGATGGCGTCCACCACAC 59.968 61.111 3.88 0.00 44.17 3.82
584 585 2.746277 GATGGCGTCCACCACACC 60.746 66.667 0.50 0.00 44.17 4.16
585 586 3.545124 GATGGCGTCCACCACACCA 62.545 63.158 0.50 0.00 44.17 4.17
586 587 3.842925 ATGGCGTCCACCACACCAC 62.843 63.158 0.50 0.00 40.16 4.16
587 588 4.555709 GGCGTCCACCACACCACA 62.556 66.667 0.00 0.00 0.00 4.17
590 591 1.887242 CGTCCACCACACCACACAG 60.887 63.158 0.00 0.00 0.00 3.66
591 592 2.186826 GTCCACCACACCACACAGC 61.187 63.158 0.00 0.00 0.00 4.40
592 593 3.279116 CCACCACACCACACAGCG 61.279 66.667 0.00 0.00 0.00 5.18
593 594 2.513666 CACCACACCACACAGCGT 60.514 61.111 0.00 0.00 0.00 5.07
596 597 1.817520 CCACACCACACAGCGTTGA 60.818 57.895 6.16 0.00 0.00 3.18
597 598 1.165907 CCACACCACACAGCGTTGAT 61.166 55.000 6.16 0.00 0.00 2.57
599 600 0.179059 ACACCACACAGCGTTGATGA 60.179 50.000 6.16 0.00 0.00 2.92
600 601 0.514255 CACCACACAGCGTTGATGAG 59.486 55.000 6.16 0.00 0.00 2.90
601 602 1.230635 ACCACACAGCGTTGATGAGC 61.231 55.000 6.16 0.00 0.00 4.26
602 603 1.229975 CCACACAGCGTTGATGAGCA 61.230 55.000 6.16 0.00 35.48 4.26
603 604 0.110509 CACACAGCGTTGATGAGCAC 60.111 55.000 6.16 0.00 35.48 4.40
604 605 0.250038 ACACAGCGTTGATGAGCACT 60.250 50.000 6.16 0.00 35.48 4.40
605 606 1.000843 ACACAGCGTTGATGAGCACTA 59.999 47.619 6.16 0.00 35.48 2.74
607 608 0.649475 CAGCGTTGATGAGCACTAGC 59.351 55.000 0.00 0.00 42.56 3.42
617 618 4.740235 GCACTAGCTAGCTTCCCG 57.260 61.111 24.88 11.58 37.91 5.14
618 619 1.592939 GCACTAGCTAGCTTCCCGC 60.593 63.158 24.88 16.47 37.91 6.13
620 621 2.336809 CTAGCTAGCTTCCCGCCG 59.663 66.667 24.88 0.00 40.39 6.46
621 622 3.850095 CTAGCTAGCTTCCCGCCGC 62.850 68.421 24.88 0.00 40.39 6.53
634 635 4.547367 GCCGCCGGTCCTGCTATT 62.547 66.667 4.45 0.00 0.00 1.73
635 636 2.189521 CCGCCGGTCCTGCTATTT 59.810 61.111 1.90 0.00 0.00 1.40
637 638 0.179067 CCGCCGGTCCTGCTATTTTA 60.179 55.000 1.90 0.00 0.00 1.52
638 639 1.658994 CGCCGGTCCTGCTATTTTAA 58.341 50.000 1.90 0.00 0.00 1.52
639 640 2.011222 CGCCGGTCCTGCTATTTTAAA 58.989 47.619 1.90 0.00 0.00 1.52
640 641 2.420722 CGCCGGTCCTGCTATTTTAAAA 59.579 45.455 1.90 2.51 0.00 1.52
641 642 3.729762 CGCCGGTCCTGCTATTTTAAAAC 60.730 47.826 1.90 0.00 0.00 2.43
642 643 3.191791 GCCGGTCCTGCTATTTTAAAACA 59.808 43.478 1.90 0.00 0.00 2.83
643 644 4.729595 CCGGTCCTGCTATTTTAAAACAC 58.270 43.478 1.97 0.00 0.00 3.32
645 646 5.151389 CGGTCCTGCTATTTTAAAACACAC 58.849 41.667 1.97 0.00 0.00 3.82
646 647 5.278071 CGGTCCTGCTATTTTAAAACACACA 60.278 40.000 1.97 0.00 0.00 3.72
649 650 7.968405 GGTCCTGCTATTTTAAAACACACATAG 59.032 37.037 1.97 1.59 0.00 2.23
666 667 5.410746 ACACATAGAATGTTCTCTTGTGCAG 59.589 40.000 24.16 11.91 45.65 4.41
667 668 4.394300 ACATAGAATGTTCTCTTGTGCAGC 59.606 41.667 0.00 0.00 41.63 5.25
748 756 2.032178 CGAATAGCCAAAAGTAGCAGCC 59.968 50.000 0.00 0.00 0.00 4.85
765 773 3.777925 CTCAGTTCGGCGCCGTTG 61.778 66.667 44.16 36.17 40.74 4.10
781 789 2.798364 TTGGCCTTGACCGACGACA 61.798 57.895 3.32 0.00 0.00 4.35
822 841 1.153628 CAGGTAGCACTGCGGGTAC 60.154 63.158 0.00 0.42 40.19 3.34
906 925 0.899717 AGTCAACATTTGCGCCCCAT 60.900 50.000 4.18 0.00 0.00 4.00
933 952 1.654137 GCACCACGCGTTTTCACTG 60.654 57.895 10.22 0.00 0.00 3.66
935 954 0.315869 CACCACGCGTTTTCACTGTC 60.316 55.000 10.22 0.00 0.00 3.51
938 957 0.042188 CACGCGTTTTCACTGTCTGG 60.042 55.000 10.22 0.00 0.00 3.86
941 960 1.332904 CGCGTTTTCACTGTCTGGTTC 60.333 52.381 0.00 0.00 0.00 3.62
942 961 1.002792 GCGTTTTCACTGTCTGGTTCC 60.003 52.381 0.00 0.00 0.00 3.62
943 962 2.561569 CGTTTTCACTGTCTGGTTCCT 58.438 47.619 0.00 0.00 0.00 3.36
944 963 3.724374 CGTTTTCACTGTCTGGTTCCTA 58.276 45.455 0.00 0.00 0.00 2.94
946 965 5.475719 CGTTTTCACTGTCTGGTTCCTATA 58.524 41.667 0.00 0.00 0.00 1.31
947 966 5.577164 CGTTTTCACTGTCTGGTTCCTATAG 59.423 44.000 0.00 0.00 0.00 1.31
948 967 6.571731 CGTTTTCACTGTCTGGTTCCTATAGA 60.572 42.308 0.00 0.00 0.00 1.98
952 971 5.958380 TCACTGTCTGGTTCCTATAGAATGT 59.042 40.000 0.00 0.00 36.69 2.71
953 972 7.123383 TCACTGTCTGGTTCCTATAGAATGTA 58.877 38.462 0.00 0.00 36.69 2.29
954 973 7.618117 TCACTGTCTGGTTCCTATAGAATGTAA 59.382 37.037 0.00 0.00 36.69 2.41
955 974 8.258007 CACTGTCTGGTTCCTATAGAATGTAAA 58.742 37.037 0.00 0.00 36.69 2.01
956 975 8.478877 ACTGTCTGGTTCCTATAGAATGTAAAG 58.521 37.037 0.00 0.00 36.69 1.85
958 977 9.042450 TGTCTGGTTCCTATAGAATGTAAAGAA 57.958 33.333 0.00 0.00 36.69 2.52
959 978 9.535878 GTCTGGTTCCTATAGAATGTAAAGAAG 57.464 37.037 0.00 0.00 36.69 2.85
963 982 7.169476 GGTTCCTATAGAATGTAAAGAAGACGC 59.831 40.741 0.00 0.00 36.69 5.19
969 3009 5.784177 AGAATGTAAAGAAGACGCTCTGAA 58.216 37.500 0.00 0.00 0.00 3.02
998 3045 2.550830 ACCAACTAAGTCCTGCACAG 57.449 50.000 0.00 0.00 0.00 3.66
1061 3108 1.875963 CCTTGCCACGCCTTACTTG 59.124 57.895 0.00 0.00 0.00 3.16
1132 3179 3.587061 TCTCCAGTGGAAATCAAGCCTAA 59.413 43.478 14.17 0.00 0.00 2.69
1145 3192 1.135960 AGCCTAAAGGGATGGAGCTC 58.864 55.000 4.71 4.71 37.23 4.09
1169 3216 1.952367 GCTGGACTCATGGACAAAGGG 60.952 57.143 0.00 0.00 0.00 3.95
1230 3277 4.722700 GTGCTGCCCCGTGGTGAT 62.723 66.667 0.00 0.00 0.00 3.06
1231 3278 4.720902 TGCTGCCCCGTGGTGATG 62.721 66.667 0.00 0.00 0.00 3.07
1233 3280 4.415150 CTGCCCCGTGGTGATGCT 62.415 66.667 0.00 0.00 0.00 3.79
1234 3281 4.720902 TGCCCCGTGGTGATGCTG 62.721 66.667 0.00 0.00 0.00 4.41
1235 3282 4.722700 GCCCCGTGGTGATGCTGT 62.723 66.667 0.00 0.00 0.00 4.40
1236 3283 2.436646 CCCCGTGGTGATGCTGTC 60.437 66.667 0.00 0.00 0.00 3.51
1237 3284 2.436646 CCCGTGGTGATGCTGTCC 60.437 66.667 0.00 0.00 0.00 4.02
1238 3285 2.665000 CCGTGGTGATGCTGTCCT 59.335 61.111 0.00 0.00 0.00 3.85
1239 3286 1.613317 CCCGTGGTGATGCTGTCCTA 61.613 60.000 0.00 0.00 0.00 2.94
1240 3287 0.179100 CCGTGGTGATGCTGTCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
1241 3288 0.532573 CGTGGTGATGCTGTCCTAGT 59.467 55.000 0.00 0.00 0.00 2.57
1242 3289 1.066858 CGTGGTGATGCTGTCCTAGTT 60.067 52.381 0.00 0.00 0.00 2.24
1243 3290 2.350522 GTGGTGATGCTGTCCTAGTTG 58.649 52.381 0.00 0.00 0.00 3.16
1244 3291 1.977854 TGGTGATGCTGTCCTAGTTGT 59.022 47.619 0.00 0.00 0.00 3.32
1245 3292 2.289631 TGGTGATGCTGTCCTAGTTGTG 60.290 50.000 0.00 0.00 0.00 3.33
1246 3293 2.350522 GTGATGCTGTCCTAGTTGTGG 58.649 52.381 0.00 0.00 0.00 4.17
1247 3294 2.028112 GTGATGCTGTCCTAGTTGTGGA 60.028 50.000 0.00 0.00 0.00 4.02
1262 3309 4.647424 TTGTGGACAACATTTCACTTCC 57.353 40.909 0.00 0.00 38.99 3.46
1263 3310 2.616376 TGTGGACAACATTTCACTTCCG 59.384 45.455 0.00 0.00 32.36 4.30
1264 3311 2.616842 GTGGACAACATTTCACTTCCGT 59.383 45.455 0.00 0.00 0.00 4.69
1265 3312 2.875933 TGGACAACATTTCACTTCCGTC 59.124 45.455 0.00 0.00 0.00 4.79
1266 3313 2.225727 GGACAACATTTCACTTCCGTCC 59.774 50.000 0.00 0.00 35.34 4.79
1267 3314 3.139077 GACAACATTTCACTTCCGTCCT 58.861 45.455 0.00 0.00 0.00 3.85
1268 3315 2.878406 ACAACATTTCACTTCCGTCCTG 59.122 45.455 0.00 0.00 0.00 3.86
1269 3316 2.878406 CAACATTTCACTTCCGTCCTGT 59.122 45.455 0.00 0.00 0.00 4.00
1270 3317 2.767505 ACATTTCACTTCCGTCCTGTC 58.232 47.619 0.00 0.00 0.00 3.51
1271 3318 2.104111 ACATTTCACTTCCGTCCTGTCA 59.896 45.455 0.00 0.00 0.00 3.58
1272 3319 2.234300 TTTCACTTCCGTCCTGTCAC 57.766 50.000 0.00 0.00 0.00 3.67
1273 3320 1.116308 TTCACTTCCGTCCTGTCACA 58.884 50.000 0.00 0.00 0.00 3.58
1274 3321 1.338107 TCACTTCCGTCCTGTCACAT 58.662 50.000 0.00 0.00 0.00 3.21
1275 3322 1.691976 TCACTTCCGTCCTGTCACATT 59.308 47.619 0.00 0.00 0.00 2.71
1276 3323 2.069273 CACTTCCGTCCTGTCACATTC 58.931 52.381 0.00 0.00 0.00 2.67
1277 3324 1.691976 ACTTCCGTCCTGTCACATTCA 59.308 47.619 0.00 0.00 0.00 2.57
1278 3325 2.104111 ACTTCCGTCCTGTCACATTCAA 59.896 45.455 0.00 0.00 0.00 2.69
1279 3326 2.455674 TCCGTCCTGTCACATTCAAG 57.544 50.000 0.00 0.00 0.00 3.02
1280 3327 1.001974 TCCGTCCTGTCACATTCAAGG 59.998 52.381 0.00 0.00 0.00 3.61
1281 3328 0.798776 CGTCCTGTCACATTCAAGGC 59.201 55.000 0.00 0.00 0.00 4.35
1282 3329 1.877680 CGTCCTGTCACATTCAAGGCA 60.878 52.381 0.00 0.00 0.00 4.75
1283 3330 1.808945 GTCCTGTCACATTCAAGGCAG 59.191 52.381 0.00 0.00 0.00 4.85
1284 3331 1.171308 CCTGTCACATTCAAGGCAGG 58.829 55.000 0.00 0.00 37.71 4.85
1285 3332 1.546323 CCTGTCACATTCAAGGCAGGT 60.546 52.381 4.97 0.00 38.80 4.00
1286 3333 2.233271 CTGTCACATTCAAGGCAGGTT 58.767 47.619 0.00 0.00 0.00 3.50
1287 3334 1.955778 TGTCACATTCAAGGCAGGTTG 59.044 47.619 0.00 0.00 0.00 3.77
1288 3335 1.270550 GTCACATTCAAGGCAGGTTGG 59.729 52.381 0.00 0.00 0.00 3.77
1289 3336 1.144708 TCACATTCAAGGCAGGTTGGA 59.855 47.619 0.00 0.00 0.00 3.53
1290 3337 1.270550 CACATTCAAGGCAGGTTGGAC 59.729 52.381 0.00 0.00 0.00 4.02
1291 3338 1.133513 ACATTCAAGGCAGGTTGGACA 60.134 47.619 0.00 0.00 0.00 4.02
1292 3339 1.962807 CATTCAAGGCAGGTTGGACAA 59.037 47.619 0.00 0.00 0.00 3.18
1293 3340 2.380064 TTCAAGGCAGGTTGGACAAT 57.620 45.000 0.00 0.00 0.00 2.71
1294 3341 1.909700 TCAAGGCAGGTTGGACAATC 58.090 50.000 0.00 0.00 0.00 2.67
1295 3342 1.425066 TCAAGGCAGGTTGGACAATCT 59.575 47.619 0.00 0.00 30.48 2.40
1296 3343 1.815003 CAAGGCAGGTTGGACAATCTC 59.185 52.381 0.00 0.00 27.13 2.75
1297 3344 0.329596 AGGCAGGTTGGACAATCTCC 59.670 55.000 0.00 1.08 39.97 3.71
1305 3352 2.655090 TGGACAATCTCCACTTTGCA 57.345 45.000 0.00 0.00 44.99 4.08
1306 3353 2.229792 TGGACAATCTCCACTTTGCAC 58.770 47.619 0.00 0.00 44.99 4.57
1307 3354 2.229792 GGACAATCTCCACTTTGCACA 58.770 47.619 0.00 0.00 39.21 4.57
1308 3355 2.030805 GGACAATCTCCACTTTGCACAC 60.031 50.000 0.00 0.00 39.21 3.82
1309 3356 2.880890 GACAATCTCCACTTTGCACACT 59.119 45.455 0.00 0.00 0.00 3.55
1310 3357 3.290710 ACAATCTCCACTTTGCACACTT 58.709 40.909 0.00 0.00 0.00 3.16
1311 3358 3.067180 ACAATCTCCACTTTGCACACTTG 59.933 43.478 0.00 0.00 0.00 3.16
1324 3371 4.178545 GCACACTTGCCATATTTTGTCT 57.821 40.909 0.00 0.00 43.66 3.41
1325 3372 5.309323 GCACACTTGCCATATTTTGTCTA 57.691 39.130 0.00 0.00 43.66 2.59
1326 3373 5.894807 GCACACTTGCCATATTTTGTCTAT 58.105 37.500 0.00 0.00 43.66 1.98
1327 3374 5.973565 GCACACTTGCCATATTTTGTCTATC 59.026 40.000 0.00 0.00 43.66 2.08
1328 3375 6.183360 GCACACTTGCCATATTTTGTCTATCT 60.183 38.462 0.00 0.00 43.66 1.98
1329 3376 7.012327 GCACACTTGCCATATTTTGTCTATCTA 59.988 37.037 0.00 0.00 43.66 1.98
1330 3377 8.554528 CACACTTGCCATATTTTGTCTATCTAG 58.445 37.037 0.00 0.00 0.00 2.43
1331 3378 8.486210 ACACTTGCCATATTTTGTCTATCTAGA 58.514 33.333 0.00 0.00 0.00 2.43
1355 3402 8.534496 AGACCTTAATTTCAATTTTCTCATGGG 58.466 33.333 0.00 0.00 0.00 4.00
1356 3403 8.434589 ACCTTAATTTCAATTTTCTCATGGGA 57.565 30.769 0.00 0.00 0.00 4.37
1357 3404 8.314021 ACCTTAATTTCAATTTTCTCATGGGAC 58.686 33.333 0.00 0.00 0.00 4.46
1358 3405 7.765819 CCTTAATTTCAATTTTCTCATGGGACC 59.234 37.037 0.00 0.00 0.00 4.46
1359 3406 6.684897 AATTTCAATTTTCTCATGGGACCA 57.315 33.333 0.00 0.00 0.00 4.02
1360 3407 6.684897 ATTTCAATTTTCTCATGGGACCAA 57.315 33.333 0.00 0.00 0.00 3.67
1361 3408 6.684897 TTTCAATTTTCTCATGGGACCAAT 57.315 33.333 0.00 0.00 0.00 3.16
1362 3409 5.920193 TCAATTTTCTCATGGGACCAATC 57.080 39.130 0.00 0.00 0.00 2.67
1363 3410 4.711355 TCAATTTTCTCATGGGACCAATCC 59.289 41.667 0.00 0.00 45.42 3.01
1371 3418 3.905249 GGACCAATCCCGTCAAGC 58.095 61.111 0.00 0.00 39.39 4.01
1372 3419 1.002624 GGACCAATCCCGTCAAGCA 60.003 57.895 0.00 0.00 39.39 3.91
1373 3420 0.394352 GGACCAATCCCGTCAAGCAT 60.394 55.000 0.00 0.00 39.39 3.79
1402 3449 1.511305 CCCGAGCTCGCTTACTTGA 59.489 57.895 30.49 0.00 38.18 3.02
1403 3450 0.108804 CCCGAGCTCGCTTACTTGAA 60.109 55.000 30.49 0.00 38.18 2.69
1405 3452 1.855360 CCGAGCTCGCTTACTTGAATC 59.145 52.381 30.49 0.00 38.18 2.52
1411 3458 3.677424 GCTCGCTTACTTGAATCTGTCCT 60.677 47.826 0.00 0.00 0.00 3.85
1412 3459 4.109050 CTCGCTTACTTGAATCTGTCCTC 58.891 47.826 0.00 0.00 0.00 3.71
1413 3460 3.119101 TCGCTTACTTGAATCTGTCCTCC 60.119 47.826 0.00 0.00 0.00 4.30
1425 3472 0.038166 TGTCCTCCAATGGCCTGAAC 59.962 55.000 3.32 0.00 0.00 3.18
1428 3475 1.750399 CTCCAATGGCCTGAACGGG 60.750 63.158 3.32 0.00 0.00 5.28
1434 3481 1.213296 ATGGCCTGAACGGGTCTATT 58.787 50.000 3.32 0.00 0.00 1.73
1439 3486 2.629051 CCTGAACGGGTCTATTCCAAC 58.371 52.381 0.00 0.00 0.00 3.77
1455 3510 4.230745 TCCAACTTCCCTAGGTAATTGC 57.769 45.455 8.29 0.00 0.00 3.56
1457 3512 4.229582 TCCAACTTCCCTAGGTAATTGCAT 59.770 41.667 8.29 0.00 0.00 3.96
1485 3540 7.537596 ACTAATCTATGTTGATCTCTCCTGG 57.462 40.000 0.00 0.00 0.00 4.45
1486 3541 7.301420 ACTAATCTATGTTGATCTCTCCTGGA 58.699 38.462 0.00 0.00 0.00 3.86
1487 3542 6.669125 AATCTATGTTGATCTCTCCTGGAG 57.331 41.667 17.84 17.84 43.12 3.86
1497 3552 4.223556 TCTCTCCTGGAGTACTACAGTG 57.776 50.000 29.33 21.89 39.93 3.66
1509 3564 6.812160 GGAGTACTACAGTGTTTTCTACCATG 59.188 42.308 0.00 0.00 0.00 3.66
1517 3572 5.812642 CAGTGTTTTCTACCATGCCTAGTAG 59.187 44.000 1.60 1.60 37.83 2.57
1519 3576 5.581085 GTGTTTTCTACCATGCCTAGTAGTG 59.419 44.000 6.72 0.00 37.73 2.74
1533 3590 6.070824 TGCCTAGTAGTGTGAATTTGATGAGA 60.071 38.462 0.00 0.00 0.00 3.27
1536 3593 8.037758 CCTAGTAGTGTGAATTTGATGAGACTT 58.962 37.037 0.00 0.00 0.00 3.01
1541 3600 7.445121 AGTGTGAATTTGATGAGACTTCACTA 58.555 34.615 13.08 0.59 43.72 2.74
1544 3603 7.879677 TGTGAATTTGATGAGACTTCACTATGT 59.120 33.333 13.08 0.00 43.72 2.29
1563 3622 4.623932 TGTAGACTTGCCTCATCTTGTT 57.376 40.909 0.00 0.00 0.00 2.83
1566 3625 6.711277 TGTAGACTTGCCTCATCTTGTTTAT 58.289 36.000 0.00 0.00 0.00 1.40
1576 3635 5.359194 TCATCTTGTTTATCTGGACCTCC 57.641 43.478 0.00 0.00 0.00 4.30
1579 3638 4.346730 TCTTGTTTATCTGGACCTCCGTA 58.653 43.478 0.00 0.00 39.43 4.02
1580 3639 4.773674 TCTTGTTTATCTGGACCTCCGTAA 59.226 41.667 0.00 0.00 39.43 3.18
1587 3646 1.132643 CTGGACCTCCGTAAGAACTCG 59.867 57.143 0.00 0.00 39.43 4.18
1591 3650 0.100861 CCTCCGTAAGAACTCGCTCC 59.899 60.000 0.00 0.00 43.02 4.70
1592 3651 1.096416 CTCCGTAAGAACTCGCTCCT 58.904 55.000 0.00 0.00 43.02 3.69
1642 3701 4.689071 TCTTGTCAAGCTCGTGTTCTTAA 58.311 39.130 7.78 0.00 0.00 1.85
1669 3728 9.790344 ATCTATCCTACAATTTTCTCAATGGAG 57.210 33.333 0.00 0.00 42.80 3.86
1672 3731 7.452880 TCCTACAATTTTCTCAATGGAGTTG 57.547 36.000 0.00 0.00 42.05 3.16
1715 3774 5.422666 TGTACAAAACTAACGACTCTCGA 57.577 39.130 0.00 0.00 43.74 4.04
1794 3853 9.205719 ACGAGTTTAGAAAACTTAGATCTTTCC 57.794 33.333 0.00 0.00 30.83 3.13
1806 3865 8.954950 ACTTAGATCTTTCCTACAATCACATG 57.045 34.615 0.00 0.00 0.00 3.21
1834 3893 5.245977 GGTTCCTTCCCTTCAATCATTTTGA 59.754 40.000 0.00 0.00 0.00 2.69
1843 3902 7.038445 TCCCTTCAATCATTTTGAAATTAGCCA 60.038 33.333 2.77 0.00 37.89 4.75
1867 3926 7.329717 CCACTCTAACAACACTAGATCTTGAAC 59.670 40.741 11.29 0.00 0.00 3.18
1904 3963 4.981674 CAGCATGTTACCACGAACAATTTT 59.018 37.500 0.00 0.00 42.39 1.82
1916 3975 7.148239 ACCACGAACAATTTTGATCTCTTATCC 60.148 37.037 0.00 0.00 0.00 2.59
1946 4005 9.328845 CCTAATAATAAAGCACGTAGGGTTTTA 57.671 33.333 8.15 2.80 39.10 1.52
1969 4028 2.554272 GCCGTCGCGACAATTTGT 59.446 55.556 35.71 0.63 0.00 2.83
2004 4063 3.062504 GCATTTTCATGAAATCAACCCGC 59.937 43.478 21.10 11.90 35.79 6.13
2005 4064 2.627863 TTTCATGAAATCAACCCGCG 57.372 45.000 16.91 0.00 0.00 6.46
2006 4065 0.170116 TTCATGAAATCAACCCGCGC 59.830 50.000 5.45 0.00 0.00 6.86
2007 4066 1.583451 CATGAAATCAACCCGCGCG 60.583 57.895 25.67 25.67 0.00 6.86
2022 4081 1.586578 CGCGCGCAGTCTAGATTTAAA 59.413 47.619 32.61 0.00 0.00 1.52
2034 4093 7.545965 CAGTCTAGATTTAAATCACACCGAACT 59.454 37.037 26.02 16.28 37.89 3.01
2089 4151 0.682852 TTAGGTATTCCATCCGCGGG 59.317 55.000 27.83 10.29 35.89 6.13
2498 4598 8.178313 AGGGAAAAGAAAACATCGAAAACTAT 57.822 30.769 0.00 0.00 0.00 2.12
2527 4627 2.388735 ACCTCTGAATACATCGCAGGA 58.611 47.619 0.00 0.00 0.00 3.86
2533 4633 5.674525 TCTGAATACATCGCAGGAGAAAAT 58.325 37.500 0.00 0.00 0.00 1.82
2541 4641 5.525378 ACATCGCAGGAGAAAATAACAGATC 59.475 40.000 0.00 0.00 0.00 2.75
2542 4642 5.084818 TCGCAGGAGAAAATAACAGATCA 57.915 39.130 0.00 0.00 0.00 2.92
2543 4643 5.674525 TCGCAGGAGAAAATAACAGATCAT 58.325 37.500 0.00 0.00 0.00 2.45
2544 4644 6.115446 TCGCAGGAGAAAATAACAGATCATT 58.885 36.000 0.00 0.00 0.00 2.57
2548 4648 7.490402 GCAGGAGAAAATAACAGATCATTTTGG 59.510 37.037 6.28 0.00 35.14 3.28
2563 4663 6.516739 TCATTTTGGTTTGTGTGAACACTA 57.483 33.333 14.28 4.46 46.55 2.74
2570 4670 1.961793 TGTGTGAACACTAAGGCCAC 58.038 50.000 14.28 0.00 46.55 5.01
2590 4690 3.691342 CCGGCGAGGGTGTGAAGA 61.691 66.667 9.30 0.00 35.97 2.87
2618 4718 1.854126 GCGGCAACACAAATATGATGC 59.146 47.619 0.00 0.00 35.20 3.91
2619 4719 2.110990 CGGCAACACAAATATGATGCG 58.889 47.619 2.52 0.00 36.08 4.73
2624 4724 2.279741 ACACAAATATGATGCGTCGCT 58.720 42.857 19.50 3.67 0.00 4.93
2633 4733 8.952979 CAAATATGATGCGTCGCTAAAATAAAA 58.047 29.630 19.50 0.00 0.00 1.52
2670 4770 3.251004 GTGGTCTTGAGTGATGGTTGTTC 59.749 47.826 0.00 0.00 0.00 3.18
2677 4777 4.452825 TGAGTGATGGTTGTTCGGTTAAA 58.547 39.130 0.00 0.00 0.00 1.52
2688 4788 4.724303 TGTTCGGTTAAAAGTGTGTGTTG 58.276 39.130 0.00 0.00 0.00 3.33
2695 4795 6.074249 CGGTTAAAAGTGTGTGTTGTGTTTTT 60.074 34.615 0.00 0.00 0.00 1.94
2724 4824 1.847890 GCAACGCACGGGCTCTTTTA 61.848 55.000 8.62 0.00 38.10 1.52
2756 4866 9.845740 ATAATAAATAAAATTGGGTTTCTGGCC 57.154 29.630 0.00 0.00 0.00 5.36
2757 4867 3.885724 ATAAAATTGGGTTTCTGGCCG 57.114 42.857 0.00 0.00 0.00 6.13
2760 4870 4.986708 TTGGGTTTCTGGCCGCCC 62.987 66.667 7.03 5.20 41.42 6.13
2825 4939 4.881850 AGAAATTAACCCGCAGTCCTATTG 59.118 41.667 0.00 0.00 0.00 1.90
2891 5022 6.958767 ACCCTGCATTAGTTACAATTCTACT 58.041 36.000 0.00 0.00 0.00 2.57
3269 5458 1.002011 GTGCTCTCTTGGGGTTCCC 60.002 63.158 0.00 0.00 45.71 3.97
3318 5507 1.064946 CGGATGAGGAGACGCTGAC 59.935 63.158 0.00 0.00 0.00 3.51
3364 5553 1.194781 GCCACAGTCAGGGAAGAGGA 61.195 60.000 0.00 0.00 0.00 3.71
3377 5570 0.617935 AAGAGGAGAGGAGCCAAAGC 59.382 55.000 0.00 0.00 40.32 3.51
3400 5593 2.892425 GCATCGGAGTTGGAGGCG 60.892 66.667 0.00 0.00 31.16 5.52
3422 5615 2.068821 TGGCTGGGCAGAGAGATCC 61.069 63.158 0.00 0.00 0.00 3.36
3445 5638 4.168291 GCAAGGGAGCTCGGGGAG 62.168 72.222 7.83 0.00 0.00 4.30
3446 5639 2.364317 CAAGGGAGCTCGGGGAGA 60.364 66.667 7.83 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.184581 AGTTCGTGCTCGAGATGAAAAAC 59.815 43.478 18.75 11.49 46.81 2.43
15 16 1.805945 AAGCGGATCGAGTTCGTGC 60.806 57.895 1.07 2.76 40.80 5.34
19 20 3.079960 TGTATCAAGCGGATCGAGTTC 57.920 47.619 0.00 0.00 37.44 3.01
22 23 4.383052 GTGTATTGTATCAAGCGGATCGAG 59.617 45.833 0.00 0.00 37.44 4.04
23 24 4.202070 TGTGTATTGTATCAAGCGGATCGA 60.202 41.667 0.00 0.00 37.44 3.59
25 26 5.289595 TCTGTGTATTGTATCAAGCGGATC 58.710 41.667 0.00 0.00 37.44 3.36
29 30 4.271049 CCCTTCTGTGTATTGTATCAAGCG 59.729 45.833 0.00 0.00 0.00 4.68
30 31 5.428253 TCCCTTCTGTGTATTGTATCAAGC 58.572 41.667 0.00 0.00 0.00 4.01
32 33 6.127054 CCTCTCCCTTCTGTGTATTGTATCAA 60.127 42.308 0.00 0.00 0.00 2.57
33 34 5.363868 CCTCTCCCTTCTGTGTATTGTATCA 59.636 44.000 0.00 0.00 0.00 2.15
34 35 5.221541 CCCTCTCCCTTCTGTGTATTGTATC 60.222 48.000 0.00 0.00 0.00 2.24
35 36 4.656112 CCCTCTCCCTTCTGTGTATTGTAT 59.344 45.833 0.00 0.00 0.00 2.29
36 37 4.030913 CCCTCTCCCTTCTGTGTATTGTA 58.969 47.826 0.00 0.00 0.00 2.41
37 38 2.840651 CCCTCTCCCTTCTGTGTATTGT 59.159 50.000 0.00 0.00 0.00 2.71
38 39 3.107601 TCCCTCTCCCTTCTGTGTATTG 58.892 50.000 0.00 0.00 0.00 1.90
39 40 3.108376 GTCCCTCTCCCTTCTGTGTATT 58.892 50.000 0.00 0.00 0.00 1.89
40 41 2.316372 AGTCCCTCTCCCTTCTGTGTAT 59.684 50.000 0.00 0.00 0.00 2.29
41 42 1.717077 AGTCCCTCTCCCTTCTGTGTA 59.283 52.381 0.00 0.00 0.00 2.90
42 43 0.489567 AGTCCCTCTCCCTTCTGTGT 59.510 55.000 0.00 0.00 0.00 3.72
43 44 1.650528 AAGTCCCTCTCCCTTCTGTG 58.349 55.000 0.00 0.00 0.00 3.66
45 46 3.570550 CGTATAAGTCCCTCTCCCTTCTG 59.429 52.174 0.00 0.00 0.00 3.02
46 47 3.834938 CGTATAAGTCCCTCTCCCTTCT 58.165 50.000 0.00 0.00 0.00 2.85
47 48 2.296752 GCGTATAAGTCCCTCTCCCTTC 59.703 54.545 0.00 0.00 0.00 3.46
49 50 1.818522 CGCGTATAAGTCCCTCTCCCT 60.819 57.143 0.00 0.00 0.00 4.20
51 52 0.039346 GCGCGTATAAGTCCCTCTCC 60.039 60.000 8.43 0.00 0.00 3.71
52 53 0.385723 CGCGCGTATAAGTCCCTCTC 60.386 60.000 24.19 0.00 0.00 3.20
54 55 2.015090 GCGCGCGTATAAGTCCCTC 61.015 63.158 32.35 5.70 0.00 4.30
55 56 2.027169 GCGCGCGTATAAGTCCCT 59.973 61.111 32.35 0.00 0.00 4.20
56 57 3.392440 CGCGCGCGTATAAGTCCC 61.392 66.667 42.49 10.04 34.35 4.46
92 93 4.738998 TGGGGTGCATTGGGAGCG 62.739 66.667 0.00 0.00 33.16 5.03
94 95 1.379044 GAGTGGGGTGCATTGGGAG 60.379 63.158 0.00 0.00 0.00 4.30
96 97 2.751436 CGAGTGGGGTGCATTGGG 60.751 66.667 0.00 0.00 0.00 4.12
97 98 3.443045 GCGAGTGGGGTGCATTGG 61.443 66.667 0.00 0.00 0.00 3.16
98 99 2.672651 TGCGAGTGGGGTGCATTG 60.673 61.111 0.00 0.00 32.86 2.82
99 100 2.672996 GTGCGAGTGGGGTGCATT 60.673 61.111 0.00 0.00 41.23 3.56
100 101 3.952508 TGTGCGAGTGGGGTGCAT 61.953 61.111 0.00 0.00 41.23 3.96
102 103 4.626081 AGTGTGCGAGTGGGGTGC 62.626 66.667 0.00 0.00 0.00 5.01
103 104 2.357517 GAGTGTGCGAGTGGGGTG 60.358 66.667 0.00 0.00 0.00 4.61
104 105 3.991051 CGAGTGTGCGAGTGGGGT 61.991 66.667 0.00 0.00 0.00 4.95
107 108 3.939837 ATGGCGAGTGTGCGAGTGG 62.940 63.158 0.00 0.00 35.06 4.00
108 109 2.433145 ATGGCGAGTGTGCGAGTG 60.433 61.111 0.00 0.00 35.06 3.51
109 110 2.433145 CATGGCGAGTGTGCGAGT 60.433 61.111 0.00 0.00 35.06 4.18
112 113 3.490759 GGACATGGCGAGTGTGCG 61.491 66.667 0.00 0.00 35.06 5.34
114 115 1.807165 CTCGGACATGGCGAGTGTG 60.807 63.158 11.00 0.00 0.00 3.82
115 116 2.573869 CTCGGACATGGCGAGTGT 59.426 61.111 11.00 0.00 0.00 3.55
116 117 2.887568 GCTCGGACATGGCGAGTG 60.888 66.667 17.77 6.37 32.89 3.51
117 118 3.069980 GAGCTCGGACATGGCGAGT 62.070 63.158 17.77 8.11 32.89 4.18
118 119 2.279120 GAGCTCGGACATGGCGAG 60.279 66.667 13.91 13.91 0.00 5.03
120 121 4.147449 TGGAGCTCGGACATGGCG 62.147 66.667 7.83 0.00 0.00 5.69
122 123 2.202797 CGTGGAGCTCGGACATGG 60.203 66.667 7.83 0.00 0.00 3.66
123 124 2.887568 GCGTGGAGCTCGGACATG 60.888 66.667 7.83 6.96 44.04 3.21
140 141 2.053116 GTCAAGCGTGCACGTGTG 60.053 61.111 36.80 31.71 42.22 3.82
141 142 3.626244 CGTCAAGCGTGCACGTGT 61.626 61.111 36.80 23.62 42.22 4.49
142 143 4.993945 GCGTCAAGCGTGCACGTG 62.994 66.667 36.80 28.28 43.66 4.49
152 153 2.183555 GGACCCGGTAGCGTCAAG 59.816 66.667 13.99 1.64 0.00 3.02
154 155 3.066190 CTGGACCCGGTAGCGTCA 61.066 66.667 13.99 5.32 0.00 4.35
155 156 4.509737 GCTGGACCCGGTAGCGTC 62.510 72.222 13.99 4.97 0.00 5.19
172 173 3.916392 GAGTGACCGTGTCAGGGCG 62.916 68.421 11.55 0.00 43.57 6.13
175 176 1.587054 GAGGAGTGACCGTGTCAGG 59.413 63.158 6.94 0.00 43.57 3.86
178 179 2.567049 CGGAGGAGTGACCGTGTC 59.433 66.667 0.00 0.00 43.53 3.67
183 184 0.105039 CAATAGGCGGAGGAGTGACC 59.895 60.000 0.00 0.00 39.35 4.02
184 185 0.530870 GCAATAGGCGGAGGAGTGAC 60.531 60.000 0.00 0.00 0.00 3.67
185 186 1.823295 GCAATAGGCGGAGGAGTGA 59.177 57.895 0.00 0.00 0.00 3.41
186 187 4.445699 GCAATAGGCGGAGGAGTG 57.554 61.111 0.00 0.00 0.00 3.51
195 196 2.223923 TGTGTTTGTTGGTGCAATAGGC 60.224 45.455 0.00 0.00 45.13 3.93
196 197 3.380142 GTGTGTTTGTTGGTGCAATAGG 58.620 45.455 0.00 0.00 0.00 2.57
197 198 3.380142 GGTGTGTTTGTTGGTGCAATAG 58.620 45.455 0.00 0.00 0.00 1.73
198 199 2.101582 GGGTGTGTTTGTTGGTGCAATA 59.898 45.455 0.00 0.00 0.00 1.90
199 200 1.134551 GGGTGTGTTTGTTGGTGCAAT 60.135 47.619 0.00 0.00 0.00 3.56
200 201 0.247736 GGGTGTGTTTGTTGGTGCAA 59.752 50.000 0.00 0.00 0.00 4.08
202 203 0.459411 GTGGGTGTGTTTGTTGGTGC 60.459 55.000 0.00 0.00 0.00 5.01
204 205 1.939769 GCGTGGGTGTGTTTGTTGGT 61.940 55.000 0.00 0.00 0.00 3.67
205 206 1.226831 GCGTGGGTGTGTTTGTTGG 60.227 57.895 0.00 0.00 0.00 3.77
206 207 0.800300 GTGCGTGGGTGTGTTTGTTG 60.800 55.000 0.00 0.00 0.00 3.33
207 208 1.509004 GTGCGTGGGTGTGTTTGTT 59.491 52.632 0.00 0.00 0.00 2.83
208 209 2.411504 GGTGCGTGGGTGTGTTTGT 61.412 57.895 0.00 0.00 0.00 2.83
210 211 2.831284 GGGTGCGTGGGTGTGTTT 60.831 61.111 0.00 0.00 0.00 2.83
211 212 4.116585 TGGGTGCGTGGGTGTGTT 62.117 61.111 0.00 0.00 0.00 3.32
212 213 4.868116 GTGGGTGCGTGGGTGTGT 62.868 66.667 0.00 0.00 0.00 3.72
234 235 4.012895 GTGTCCTTGCGTGCGTGG 62.013 66.667 0.00 0.00 0.00 4.94
235 236 3.268603 TGTGTCCTTGCGTGCGTG 61.269 61.111 0.00 0.00 0.00 5.34
237 238 4.354212 CGTGTGTCCTTGCGTGCG 62.354 66.667 0.00 0.00 0.00 5.34
238 239 4.666532 GCGTGTGTCCTTGCGTGC 62.667 66.667 0.00 0.00 0.00 5.34
239 240 3.268603 TGCGTGTGTCCTTGCGTG 61.269 61.111 0.00 0.00 0.00 5.34
240 241 3.269347 GTGCGTGTGTCCTTGCGT 61.269 61.111 0.00 0.00 0.00 5.24
242 243 2.327940 GTGTGCGTGTGTCCTTGC 59.672 61.111 0.00 0.00 0.00 4.01
244 245 1.078778 TGTGTGTGCGTGTGTCCTT 60.079 52.632 0.00 0.00 0.00 3.36
245 246 1.813753 GTGTGTGTGCGTGTGTCCT 60.814 57.895 0.00 0.00 0.00 3.85
247 248 2.319707 CGTGTGTGTGCGTGTGTC 59.680 61.111 0.00 0.00 0.00 3.67
248 249 3.860125 GCGTGTGTGTGCGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
249 250 4.589700 GGCGTGTGTGTGCGTGTG 62.590 66.667 0.00 0.00 0.00 3.82
284 285 3.279116 TGCGTGTGTGCAAGGAGC 61.279 61.111 0.00 0.00 43.02 4.70
321 322 2.052782 ATTGGGAATAAGCCGTGACC 57.947 50.000 0.00 0.00 0.00 4.02
322 323 3.808174 GTCTATTGGGAATAAGCCGTGAC 59.192 47.826 0.00 0.00 0.00 3.67
324 325 2.800544 CGTCTATTGGGAATAAGCCGTG 59.199 50.000 0.00 0.00 0.00 4.94
325 326 2.224209 CCGTCTATTGGGAATAAGCCGT 60.224 50.000 0.00 0.00 0.00 5.68
326 327 2.413837 CCGTCTATTGGGAATAAGCCG 58.586 52.381 0.00 0.00 0.00 5.52
327 328 2.152016 GCCGTCTATTGGGAATAAGCC 58.848 52.381 0.00 0.00 0.00 4.35
328 329 1.798813 CGCCGTCTATTGGGAATAAGC 59.201 52.381 0.00 0.00 0.00 3.09
329 330 2.413837 CCGCCGTCTATTGGGAATAAG 58.586 52.381 0.00 0.00 0.00 1.73
332 333 1.227853 GCCGCCGTCTATTGGGAAT 60.228 57.895 0.00 0.00 0.00 3.01
333 334 2.186602 TTGCCGCCGTCTATTGGGAA 62.187 55.000 0.00 0.00 0.00 3.97
334 335 2.661066 TTGCCGCCGTCTATTGGGA 61.661 57.895 0.00 0.00 0.00 4.37
335 336 2.124901 TTGCCGCCGTCTATTGGG 60.125 61.111 0.00 0.00 0.00 4.12
336 337 2.808958 CGTTGCCGCCGTCTATTGG 61.809 63.158 0.00 0.00 0.00 3.16
337 338 1.752501 CTCGTTGCCGCCGTCTATTG 61.753 60.000 0.00 0.00 0.00 1.90
338 339 1.518572 CTCGTTGCCGCCGTCTATT 60.519 57.895 0.00 0.00 0.00 1.73
339 340 2.104331 CTCGTTGCCGCCGTCTAT 59.896 61.111 0.00 0.00 0.00 1.98
340 341 4.789075 GCTCGTTGCCGCCGTCTA 62.789 66.667 0.00 0.00 35.15 2.59
350 351 4.214383 CATCGGCTGCGCTCGTTG 62.214 66.667 9.73 11.38 0.00 4.10
359 360 1.948138 CGAGCTACTGCATCGGCTG 60.948 63.158 11.24 0.00 43.82 4.85
361 362 1.659954 CTCGAGCTACTGCATCGGC 60.660 63.158 0.00 2.24 42.74 5.54
362 363 1.007964 CCTCGAGCTACTGCATCGG 60.008 63.158 6.99 0.00 42.74 4.18
364 365 3.863681 CTCCTCGAGCTACTGCATC 57.136 57.895 6.99 0.00 42.74 3.91
376 377 3.329688 AACGACTCGCTGCTCCTCG 62.330 63.158 0.00 3.25 0.00 4.63
377 378 1.515304 GAACGACTCGCTGCTCCTC 60.515 63.158 0.00 0.00 0.00 3.71
378 379 1.974343 AGAACGACTCGCTGCTCCT 60.974 57.895 0.00 0.00 0.00 3.69
379 380 1.803519 CAGAACGACTCGCTGCTCC 60.804 63.158 0.00 0.00 0.00 4.70
380 381 3.760673 CAGAACGACTCGCTGCTC 58.239 61.111 0.00 0.00 0.00 4.26
383 384 2.811317 GGGCAGAACGACTCGCTG 60.811 66.667 0.00 0.11 0.00 5.18
384 385 4.421479 CGGGCAGAACGACTCGCT 62.421 66.667 0.00 0.00 0.00 4.93
387 388 4.719369 ACGCGGGCAGAACGACTC 62.719 66.667 12.47 0.00 0.00 3.36
388 389 4.719369 GACGCGGGCAGAACGACT 62.719 66.667 12.47 0.00 0.00 4.18
395 396 4.394712 AAAGGAGGACGCGGGCAG 62.395 66.667 12.47 0.00 0.00 4.85
398 399 4.394712 AGCAAAGGAGGACGCGGG 62.395 66.667 12.47 0.00 0.00 6.13
399 400 2.815647 GAGCAAAGGAGGACGCGG 60.816 66.667 12.47 0.00 0.00 6.46
400 401 2.097038 CAGAGCAAAGGAGGACGCG 61.097 63.158 3.53 3.53 0.00 6.01
401 402 2.394563 GCAGAGCAAAGGAGGACGC 61.395 63.158 0.00 0.00 0.00 5.19
405 406 1.572085 CGTGTGCAGAGCAAAGGAGG 61.572 60.000 0.00 0.00 41.47 4.30
406 407 0.882042 ACGTGTGCAGAGCAAAGGAG 60.882 55.000 8.67 0.00 41.47 3.69
407 408 1.146041 ACGTGTGCAGAGCAAAGGA 59.854 52.632 8.67 0.00 41.47 3.36
408 409 1.280746 CACGTGTGCAGAGCAAAGG 59.719 57.895 7.58 0.70 41.47 3.11
409 410 4.907946 CACGTGTGCAGAGCAAAG 57.092 55.556 7.58 0.00 41.47 2.77
434 435 2.809601 AATGTCTGGTCGCGTCGC 60.810 61.111 7.29 7.29 0.00 5.19
435 436 2.444624 CCAATGTCTGGTCGCGTCG 61.445 63.158 5.77 0.00 40.78 5.12
436 437 2.100631 CCCAATGTCTGGTCGCGTC 61.101 63.158 5.77 0.00 44.76 5.19
437 438 2.047274 CCCAATGTCTGGTCGCGT 60.047 61.111 5.77 0.00 44.76 6.01
438 439 3.499737 GCCCAATGTCTGGTCGCG 61.500 66.667 0.00 0.00 44.76 5.87
440 441 2.438434 GGGCCCAATGTCTGGTCG 60.438 66.667 19.95 0.00 44.76 4.79
441 442 2.043953 GGGGCCCAATGTCTGGTC 60.044 66.667 26.86 0.00 44.76 4.02
443 444 2.043652 CTGGGGCCCAATGTCTGG 60.044 66.667 28.43 9.25 45.97 3.86
444 445 1.379044 GTCTGGGGCCCAATGTCTG 60.379 63.158 28.43 14.12 30.80 3.51
446 447 2.438434 CGTCTGGGGCCCAATGTC 60.438 66.667 28.43 12.68 30.80 3.06
467 468 0.110373 CCTTTGTAACGCAACGGAGC 60.110 55.000 0.00 0.00 46.07 4.70
468 469 1.504359 TCCTTTGTAACGCAACGGAG 58.496 50.000 1.76 0.00 46.49 4.63
470 471 1.069500 CCTTCCTTTGTAACGCAACGG 60.069 52.381 0.00 0.00 44.97 4.44
471 472 1.662026 GCCTTCCTTTGTAACGCAACG 60.662 52.381 0.00 0.00 36.72 4.10
472 473 1.662026 CGCCTTCCTTTGTAACGCAAC 60.662 52.381 0.00 0.00 36.72 4.17
473 474 0.589223 CGCCTTCCTTTGTAACGCAA 59.411 50.000 0.00 0.00 34.87 4.85
475 476 1.154282 GCGCCTTCCTTTGTAACGC 60.154 57.895 0.00 0.00 37.93 4.84
476 477 1.131826 CGCGCCTTCCTTTGTAACG 59.868 57.895 0.00 0.00 0.00 3.18
477 478 0.165295 GTCGCGCCTTCCTTTGTAAC 59.835 55.000 0.00 0.00 0.00 2.50
478 479 1.286354 CGTCGCGCCTTCCTTTGTAA 61.286 55.000 0.00 0.00 0.00 2.41
479 480 1.735198 CGTCGCGCCTTCCTTTGTA 60.735 57.895 0.00 0.00 0.00 2.41
480 481 3.041940 CGTCGCGCCTTCCTTTGT 61.042 61.111 0.00 0.00 0.00 2.83
497 498 1.799519 CTCGACTCACTGCGTCAGC 60.800 63.158 6.74 0.00 45.41 4.26
498 499 1.799519 GCTCGACTCACTGCGTCAG 60.800 63.158 5.47 5.47 37.52 3.51
500 501 2.872001 CGCTCGACTCACTGCGTC 60.872 66.667 6.34 0.00 42.93 5.19
503 504 3.923563 AAGGCGCTCGACTCACTGC 62.924 63.158 7.64 0.00 29.93 4.40
504 505 2.091112 CAAGGCGCTCGACTCACTG 61.091 63.158 7.64 0.00 29.93 3.66
505 506 2.259818 CAAGGCGCTCGACTCACT 59.740 61.111 7.64 0.00 29.93 3.41
506 507 2.089349 GTCAAGGCGCTCGACTCAC 61.089 63.158 7.64 0.00 29.93 3.51
510 511 3.173240 GTCGTCAAGGCGCTCGAC 61.173 66.667 7.64 15.52 43.81 4.20
511 512 4.415332 GGTCGTCAAGGCGCTCGA 62.415 66.667 7.64 7.67 0.00 4.04
513 514 2.332362 TATCGGTCGTCAAGGCGCTC 62.332 60.000 7.64 0.00 0.00 5.03
514 515 2.337749 CTATCGGTCGTCAAGGCGCT 62.338 60.000 7.64 0.00 0.00 5.92
515 516 1.944676 CTATCGGTCGTCAAGGCGC 60.945 63.158 0.00 0.00 0.00 6.53
516 517 0.317103 CTCTATCGGTCGTCAAGGCG 60.317 60.000 0.00 0.00 0.00 5.52
517 518 0.030908 CCTCTATCGGTCGTCAAGGC 59.969 60.000 0.00 0.00 0.00 4.35
518 519 0.669077 CCCTCTATCGGTCGTCAAGG 59.331 60.000 0.00 0.00 0.00 3.61
519 520 1.604755 CTCCCTCTATCGGTCGTCAAG 59.395 57.143 0.00 0.00 0.00 3.02
520 521 1.676746 CTCCCTCTATCGGTCGTCAA 58.323 55.000 0.00 0.00 0.00 3.18
522 523 0.535553 AGCTCCCTCTATCGGTCGTC 60.536 60.000 0.00 0.00 0.00 4.20
523 524 0.106619 AAGCTCCCTCTATCGGTCGT 60.107 55.000 0.00 0.00 0.00 4.34
524 525 0.312416 CAAGCTCCCTCTATCGGTCG 59.688 60.000 0.00 0.00 0.00 4.79
525 526 1.611491 CTCAAGCTCCCTCTATCGGTC 59.389 57.143 0.00 0.00 0.00 4.79
528 529 0.965439 CCCTCAAGCTCCCTCTATCG 59.035 60.000 0.00 0.00 0.00 2.92
529 530 0.684535 GCCCTCAAGCTCCCTCTATC 59.315 60.000 0.00 0.00 0.00 2.08
532 533 1.994507 CTGCCCTCAAGCTCCCTCT 60.995 63.158 0.00 0.00 0.00 3.69
534 535 3.726144 GCTGCCCTCAAGCTCCCT 61.726 66.667 0.00 0.00 0.00 4.20
535 536 4.811364 GGCTGCCCTCAAGCTCCC 62.811 72.222 7.66 0.00 0.00 4.30
536 537 3.355957 ATGGCTGCCCTCAAGCTCC 62.356 63.158 17.53 0.00 0.00 4.70
537 538 2.119655 CATGGCTGCCCTCAAGCTC 61.120 63.158 17.53 0.00 0.00 4.09
538 539 2.044252 CATGGCTGCCCTCAAGCT 60.044 61.111 17.53 0.00 0.00 3.74
539 540 3.145551 CCATGGCTGCCCTCAAGC 61.146 66.667 17.53 0.00 0.00 4.01
540 541 3.145551 GCCATGGCTGCCCTCAAG 61.146 66.667 29.98 1.50 38.26 3.02
543 544 4.175337 TACGCCATGGCTGCCCTC 62.175 66.667 33.07 4.09 39.32 4.30
544 545 4.181010 CTACGCCATGGCTGCCCT 62.181 66.667 33.07 13.78 39.32 5.19
552 553 2.108976 ATCACCGCCTACGCCATG 59.891 61.111 0.00 0.00 38.22 3.66
554 555 4.155733 CCATCACCGCCTACGCCA 62.156 66.667 0.00 0.00 38.22 5.69
557 558 4.508128 ACGCCATCACCGCCTACG 62.508 66.667 0.00 0.00 39.67 3.51
558 559 2.585247 GACGCCATCACCGCCTAC 60.585 66.667 0.00 0.00 0.00 3.18
559 560 3.845259 GGACGCCATCACCGCCTA 61.845 66.667 0.00 0.00 0.00 3.93
566 567 2.031919 GTGTGGTGGACGCCATCA 59.968 61.111 7.97 7.62 43.05 3.07
572 573 1.887242 CTGTGTGGTGTGGTGGACG 60.887 63.158 0.00 0.00 0.00 4.79
573 574 2.186826 GCTGTGTGGTGTGGTGGAC 61.187 63.158 0.00 0.00 0.00 4.02
574 575 2.191908 GCTGTGTGGTGTGGTGGA 59.808 61.111 0.00 0.00 0.00 4.02
576 577 2.112198 AACGCTGTGTGGTGTGGTG 61.112 57.895 0.00 0.00 0.00 4.17
577 578 2.112198 CAACGCTGTGTGGTGTGGT 61.112 57.895 0.00 0.00 0.00 4.16
579 580 0.041047 CATCAACGCTGTGTGGTGTG 60.041 55.000 0.00 0.00 32.04 3.82
581 582 0.514255 CTCATCAACGCTGTGTGGTG 59.486 55.000 0.00 0.00 31.27 4.17
582 583 1.230635 GCTCATCAACGCTGTGTGGT 61.231 55.000 0.00 0.00 0.00 4.16
583 584 1.229975 TGCTCATCAACGCTGTGTGG 61.230 55.000 0.00 0.00 0.00 4.17
584 585 0.110509 GTGCTCATCAACGCTGTGTG 60.111 55.000 0.00 0.00 0.00 3.82
585 586 0.250038 AGTGCTCATCAACGCTGTGT 60.250 50.000 0.00 0.00 0.00 3.72
586 587 1.657594 CTAGTGCTCATCAACGCTGTG 59.342 52.381 0.00 0.00 0.00 3.66
587 588 2.001812 CTAGTGCTCATCAACGCTGT 57.998 50.000 0.00 0.00 0.00 4.40
599 600 2.022240 GCGGGAAGCTAGCTAGTGCT 62.022 60.000 19.70 11.92 44.34 4.40
600 601 1.592939 GCGGGAAGCTAGCTAGTGC 60.593 63.158 19.70 15.73 44.04 4.40
601 602 4.740235 GCGGGAAGCTAGCTAGTG 57.260 61.111 19.70 9.62 44.04 2.74
617 618 4.547367 AATAGCAGGACCGGCGGC 62.547 66.667 28.71 18.78 36.08 6.53
618 619 0.179067 TAAAATAGCAGGACCGGCGG 60.179 55.000 27.06 27.06 36.08 6.13
620 621 3.191791 TGTTTTAAAATAGCAGGACCGGC 59.808 43.478 8.78 8.78 0.00 6.13
621 622 4.216687 TGTGTTTTAAAATAGCAGGACCGG 59.783 41.667 0.00 0.00 0.00 5.28
623 624 6.079424 TGTGTGTTTTAAAATAGCAGGACC 57.921 37.500 3.52 0.00 0.00 4.46
624 625 8.726988 TCTATGTGTGTTTTAAAATAGCAGGAC 58.273 33.333 3.52 0.00 0.00 3.85
625 626 8.856153 TCTATGTGTGTTTTAAAATAGCAGGA 57.144 30.769 3.52 4.48 0.00 3.86
637 638 8.131100 CACAAGAGAACATTCTATGTGTGTTTT 58.869 33.333 21.11 0.00 44.07 2.43
638 639 7.642669 CACAAGAGAACATTCTATGTGTGTTT 58.357 34.615 21.11 0.00 44.07 2.83
639 640 6.293626 GCACAAGAGAACATTCTATGTGTGTT 60.294 38.462 25.57 7.46 46.36 3.32
640 641 5.180117 GCACAAGAGAACATTCTATGTGTGT 59.820 40.000 25.57 11.55 46.36 3.72
641 642 5.179929 TGCACAAGAGAACATTCTATGTGTG 59.820 40.000 25.57 22.18 46.36 3.82
642 643 5.308014 TGCACAAGAGAACATTCTATGTGT 58.692 37.500 25.57 15.03 46.36 3.72
643 644 5.673068 GCTGCACAAGAGAACATTCTATGTG 60.673 44.000 23.22 23.22 46.83 3.21
645 646 4.393990 TGCTGCACAAGAGAACATTCTATG 59.606 41.667 0.00 0.35 37.73 2.23
646 647 4.582869 TGCTGCACAAGAGAACATTCTAT 58.417 39.130 0.00 0.00 37.73 1.98
649 650 2.095364 CCTGCTGCACAAGAGAACATTC 60.095 50.000 0.00 0.00 0.00 2.67
687 688 2.361104 ATGCGGCGGTCATTGGTT 60.361 55.556 9.78 0.00 0.00 3.67
688 689 2.824041 GATGCGGCGGTCATTGGT 60.824 61.111 9.78 0.00 0.00 3.67
727 735 2.032178 GGCTGCTACTTTTGGCTATTCG 59.968 50.000 0.00 0.00 0.00 3.34
765 773 1.810030 GATGTCGTCGGTCAAGGCC 60.810 63.158 0.00 0.00 0.00 5.19
781 789 3.071206 ACTCCACGGAGCGCTGAT 61.071 61.111 18.48 0.00 45.54 2.90
818 837 0.392060 ATTGGAGGAAACCGCGTACC 60.392 55.000 4.92 2.51 0.00 3.34
822 841 0.447801 CTGAATTGGAGGAAACCGCG 59.552 55.000 0.00 0.00 0.00 6.46
933 952 9.535878 CTTCTTTACATTCTATAGGAACCAGAC 57.464 37.037 0.00 0.00 36.70 3.51
935 954 9.535878 GTCTTCTTTACATTCTATAGGAACCAG 57.464 37.037 0.00 0.00 36.70 4.00
938 957 7.921745 AGCGTCTTCTTTACATTCTATAGGAAC 59.078 37.037 0.00 0.00 36.70 3.62
941 960 7.593273 CAGAGCGTCTTCTTTACATTCTATAGG 59.407 40.741 0.00 0.00 0.00 2.57
942 961 8.346300 TCAGAGCGTCTTCTTTACATTCTATAG 58.654 37.037 0.00 0.00 0.00 1.31
943 962 8.221965 TCAGAGCGTCTTCTTTACATTCTATA 57.778 34.615 0.00 0.00 0.00 1.31
944 963 7.101652 TCAGAGCGTCTTCTTTACATTCTAT 57.898 36.000 0.00 0.00 0.00 1.98
946 965 5.392767 TCAGAGCGTCTTCTTTACATTCT 57.607 39.130 0.00 0.00 0.00 2.40
947 966 5.163943 GGTTCAGAGCGTCTTCTTTACATTC 60.164 44.000 0.00 0.00 0.00 2.67
948 967 4.691216 GGTTCAGAGCGTCTTCTTTACATT 59.309 41.667 0.00 0.00 0.00 2.71
952 971 4.038763 TGAAGGTTCAGAGCGTCTTCTTTA 59.961 41.667 0.00 0.00 35.98 1.85
953 972 3.181465 TGAAGGTTCAGAGCGTCTTCTTT 60.181 43.478 0.00 0.00 35.98 2.52
954 973 2.365617 TGAAGGTTCAGAGCGTCTTCTT 59.634 45.455 0.00 0.00 35.98 2.52
955 974 1.964223 TGAAGGTTCAGAGCGTCTTCT 59.036 47.619 0.00 0.00 35.98 2.85
956 975 2.062519 GTGAAGGTTCAGAGCGTCTTC 58.937 52.381 0.00 0.00 37.98 2.87
958 977 1.333177 AGTGAAGGTTCAGAGCGTCT 58.667 50.000 0.00 0.00 37.98 4.18
959 978 2.156343 AAGTGAAGGTTCAGAGCGTC 57.844 50.000 0.00 0.00 37.98 5.19
963 982 4.962155 AGTTGGTAAGTGAAGGTTCAGAG 58.038 43.478 0.00 0.00 37.98 3.35
998 3045 0.250252 GGCTAGGAGAAGGCTCATGC 60.250 60.000 0.00 0.00 43.14 4.06
1052 3099 3.367395 GGAATTTGAGGCACAAGTAAGGC 60.367 47.826 0.00 0.00 39.77 4.35
1061 3108 0.527565 ATGCGTGGAATTTGAGGCAC 59.472 50.000 7.05 0.00 35.93 5.01
1132 3179 2.219989 GCTCAGAGCTCCATCCCTT 58.780 57.895 15.78 0.00 38.45 3.95
1169 3216 0.537371 CCAGTCACAGGGGTTGGTTC 60.537 60.000 0.00 0.00 0.00 3.62
1175 3222 2.923035 CCGTCCAGTCACAGGGGT 60.923 66.667 0.00 0.00 0.00 4.95
1180 3227 1.608336 CTACCCCCGTCCAGTCACA 60.608 63.158 0.00 0.00 0.00 3.58
1194 3241 3.804193 GCGTTGCTGCAGCCTACC 61.804 66.667 34.64 20.46 41.18 3.18
1221 3268 0.179100 CTAGGACAGCATCACCACGG 60.179 60.000 0.00 0.00 0.00 4.94
1224 3271 1.977854 ACAACTAGGACAGCATCACCA 59.022 47.619 0.00 0.00 0.00 4.17
1225 3272 2.350522 CACAACTAGGACAGCATCACC 58.649 52.381 0.00 0.00 0.00 4.02
1226 3273 2.028112 TCCACAACTAGGACAGCATCAC 60.028 50.000 0.00 0.00 0.00 3.06
1227 3274 2.256306 TCCACAACTAGGACAGCATCA 58.744 47.619 0.00 0.00 0.00 3.07
1241 3288 3.066064 CGGAAGTGAAATGTTGTCCACAA 59.934 43.478 0.00 0.00 39.50 3.33
1242 3289 2.616376 CGGAAGTGAAATGTTGTCCACA 59.384 45.455 0.00 0.00 40.71 4.17
1243 3290 2.616842 ACGGAAGTGAAATGTTGTCCAC 59.383 45.455 0.00 0.00 46.97 4.02
1244 3291 2.925724 ACGGAAGTGAAATGTTGTCCA 58.074 42.857 0.00 0.00 46.97 4.02
1258 3305 2.455674 TGAATGTGACAGGACGGAAG 57.544 50.000 0.00 0.00 0.00 3.46
1259 3306 2.549992 CCTTGAATGTGACAGGACGGAA 60.550 50.000 0.00 0.00 0.00 4.30
1260 3307 1.001974 CCTTGAATGTGACAGGACGGA 59.998 52.381 0.00 0.00 0.00 4.69
1261 3308 1.442769 CCTTGAATGTGACAGGACGG 58.557 55.000 0.00 0.00 0.00 4.79
1262 3309 0.798776 GCCTTGAATGTGACAGGACG 59.201 55.000 0.00 0.00 0.00 4.79
1263 3310 1.808945 CTGCCTTGAATGTGACAGGAC 59.191 52.381 0.00 0.00 0.00 3.85
1264 3311 1.271543 CCTGCCTTGAATGTGACAGGA 60.272 52.381 0.48 0.00 46.10 3.86
1265 3312 1.171308 CCTGCCTTGAATGTGACAGG 58.829 55.000 0.00 0.00 38.81 4.00
1266 3313 1.901591 ACCTGCCTTGAATGTGACAG 58.098 50.000 0.00 0.00 0.00 3.51
1267 3314 1.955778 CAACCTGCCTTGAATGTGACA 59.044 47.619 0.00 0.00 0.00 3.58
1268 3315 1.270550 CCAACCTGCCTTGAATGTGAC 59.729 52.381 0.00 0.00 0.00 3.67
1269 3316 1.144708 TCCAACCTGCCTTGAATGTGA 59.855 47.619 0.00 0.00 0.00 3.58
1270 3317 1.270550 GTCCAACCTGCCTTGAATGTG 59.729 52.381 0.00 0.00 0.00 3.21
1271 3318 1.133513 TGTCCAACCTGCCTTGAATGT 60.134 47.619 0.00 0.00 0.00 2.71
1272 3319 1.619654 TGTCCAACCTGCCTTGAATG 58.380 50.000 0.00 0.00 0.00 2.67
1273 3320 2.380064 TTGTCCAACCTGCCTTGAAT 57.620 45.000 0.00 0.00 0.00 2.57
1274 3321 2.158475 AGATTGTCCAACCTGCCTTGAA 60.158 45.455 0.00 0.00 0.00 2.69
1275 3322 1.425066 AGATTGTCCAACCTGCCTTGA 59.575 47.619 0.00 0.00 0.00 3.02
1276 3323 1.815003 GAGATTGTCCAACCTGCCTTG 59.185 52.381 0.00 0.00 0.00 3.61
1277 3324 1.272147 GGAGATTGTCCAACCTGCCTT 60.272 52.381 0.00 0.00 46.10 4.35
1278 3325 0.329596 GGAGATTGTCCAACCTGCCT 59.670 55.000 0.00 0.00 46.10 4.75
1279 3326 2.873797 GGAGATTGTCCAACCTGCC 58.126 57.895 0.00 0.00 46.10 4.85
1288 3335 2.880890 AGTGTGCAAAGTGGAGATTGTC 59.119 45.455 0.00 0.00 0.00 3.18
1289 3336 2.936202 AGTGTGCAAAGTGGAGATTGT 58.064 42.857 0.00 0.00 0.00 2.71
1290 3337 3.635331 CAAGTGTGCAAAGTGGAGATTG 58.365 45.455 0.00 0.00 0.00 2.67
1291 3338 3.996150 CAAGTGTGCAAAGTGGAGATT 57.004 42.857 0.00 0.00 0.00 2.40
1304 3351 7.325660 AGATAGACAAAATATGGCAAGTGTG 57.674 36.000 0.00 0.00 40.75 3.82
1305 3352 8.486210 TCTAGATAGACAAAATATGGCAAGTGT 58.514 33.333 0.00 0.00 40.75 3.55
1306 3353 8.893219 TCTAGATAGACAAAATATGGCAAGTG 57.107 34.615 0.00 0.00 40.75 3.16
1329 3376 8.534496 CCCATGAGAAAATTGAAATTAAGGTCT 58.466 33.333 0.00 0.00 0.00 3.85
1330 3377 8.531146 TCCCATGAGAAAATTGAAATTAAGGTC 58.469 33.333 0.00 0.00 0.00 3.85
1331 3378 8.314021 GTCCCATGAGAAAATTGAAATTAAGGT 58.686 33.333 0.00 0.00 0.00 3.50
1332 3379 7.765819 GGTCCCATGAGAAAATTGAAATTAAGG 59.234 37.037 0.00 0.00 0.00 2.69
1333 3380 8.313292 TGGTCCCATGAGAAAATTGAAATTAAG 58.687 33.333 0.00 0.00 0.00 1.85
1334 3381 8.200024 TGGTCCCATGAGAAAATTGAAATTAA 57.800 30.769 0.00 0.00 0.00 1.40
1335 3382 7.789202 TGGTCCCATGAGAAAATTGAAATTA 57.211 32.000 0.00 0.00 0.00 1.40
1336 3383 6.684897 TGGTCCCATGAGAAAATTGAAATT 57.315 33.333 0.00 0.00 0.00 1.82
1337 3384 6.684897 TTGGTCCCATGAGAAAATTGAAAT 57.315 33.333 0.00 0.00 0.00 2.17
1338 3385 6.295802 GGATTGGTCCCATGAGAAAATTGAAA 60.296 38.462 0.00 0.00 38.69 2.69
1339 3386 5.187576 GGATTGGTCCCATGAGAAAATTGAA 59.812 40.000 0.00 0.00 38.69 2.69
1340 3387 4.711355 GGATTGGTCCCATGAGAAAATTGA 59.289 41.667 0.00 0.00 38.69 2.57
1341 3388 5.014808 GGATTGGTCCCATGAGAAAATTG 57.985 43.478 0.00 0.00 38.69 2.32
1354 3401 0.394352 ATGCTTGACGGGATTGGTCC 60.394 55.000 0.00 0.00 44.29 4.46
1355 3402 1.133025 CAATGCTTGACGGGATTGGTC 59.867 52.381 0.00 0.00 39.98 4.02
1356 3403 1.176527 CAATGCTTGACGGGATTGGT 58.823 50.000 0.00 0.00 39.98 3.67
1358 3405 0.179129 GCCAATGCTTGACGGGATTG 60.179 55.000 0.00 0.00 42.16 2.67
1359 3406 1.656818 CGCCAATGCTTGACGGGATT 61.657 55.000 0.00 0.00 32.69 3.01
1360 3407 2.114670 CGCCAATGCTTGACGGGAT 61.115 57.895 0.00 0.00 32.69 3.85
1361 3408 2.745884 CGCCAATGCTTGACGGGA 60.746 61.111 0.00 0.00 32.69 5.14
1362 3409 2.527547 GAACGCCAATGCTTGACGGG 62.528 60.000 8.77 0.00 40.98 5.28
1363 3410 1.154225 GAACGCCAATGCTTGACGG 60.154 57.895 8.77 0.00 40.98 4.79
1364 3411 0.453282 CAGAACGCCAATGCTTGACG 60.453 55.000 3.81 3.81 42.43 4.35
1365 3412 0.730494 GCAGAACGCCAATGCTTGAC 60.730 55.000 0.00 0.00 37.00 3.18
1366 3413 1.580942 GCAGAACGCCAATGCTTGA 59.419 52.632 0.00 0.00 37.00 3.02
1367 3414 4.157817 GCAGAACGCCAATGCTTG 57.842 55.556 0.00 0.00 37.00 4.01
1383 3430 2.167861 CAAGTAAGCGAGCTCGGGC 61.168 63.158 35.10 20.79 40.23 6.13
1384 3431 0.108804 TTCAAGTAAGCGAGCTCGGG 60.109 55.000 35.10 11.31 40.23 5.14
1393 3440 4.207891 TGGAGGACAGATTCAAGTAAGC 57.792 45.455 0.00 0.00 0.00 3.09
1402 3449 1.064166 CAGGCCATTGGAGGACAGATT 60.064 52.381 5.01 0.00 40.05 2.40
1403 3450 0.549950 CAGGCCATTGGAGGACAGAT 59.450 55.000 5.01 0.00 40.05 2.90
1405 3452 0.329261 TTCAGGCCATTGGAGGACAG 59.671 55.000 5.01 0.00 40.05 3.51
1411 3458 2.354729 CCCGTTCAGGCCATTGGA 59.645 61.111 5.01 0.00 39.21 3.53
1412 3459 2.035626 ACCCGTTCAGGCCATTGG 59.964 61.111 5.01 0.00 39.21 3.16
1413 3460 0.251916 TAGACCCGTTCAGGCCATTG 59.748 55.000 5.01 0.00 39.21 2.82
1425 3472 1.838077 AGGGAAGTTGGAATAGACCCG 59.162 52.381 0.00 0.00 40.55 5.28
1428 3475 6.803366 TTACCTAGGGAAGTTGGAATAGAC 57.197 41.667 14.81 0.00 0.00 2.59
1434 3481 3.589735 TGCAATTACCTAGGGAAGTTGGA 59.410 43.478 21.08 18.07 0.00 3.53
1439 3486 7.881775 AGTTTAATGCAATTACCTAGGGAAG 57.118 36.000 13.16 0.12 38.79 3.46
1469 3524 4.877773 AGTACTCCAGGAGAGATCAACAT 58.122 43.478 24.45 0.00 46.50 2.71
1470 3525 4.323569 AGTACTCCAGGAGAGATCAACA 57.676 45.455 24.45 0.00 46.50 3.33
1471 3526 5.194432 TGTAGTACTCCAGGAGAGATCAAC 58.806 45.833 24.45 12.69 46.50 3.18
1483 3538 5.834742 TGGTAGAAAACACTGTAGTACTCCA 59.165 40.000 0.00 0.00 0.00 3.86
1484 3539 6.336842 TGGTAGAAAACACTGTAGTACTCC 57.663 41.667 0.00 0.00 0.00 3.85
1485 3540 6.310711 GCATGGTAGAAAACACTGTAGTACTC 59.689 42.308 0.00 0.00 0.00 2.59
1486 3541 6.164176 GCATGGTAGAAAACACTGTAGTACT 58.836 40.000 0.00 0.00 0.00 2.73
1487 3542 5.350640 GGCATGGTAGAAAACACTGTAGTAC 59.649 44.000 0.00 0.00 0.00 2.73
1497 3552 5.581085 CACACTACTAGGCATGGTAGAAAAC 59.419 44.000 25.84 0.00 41.70 2.43
1509 3564 6.256757 GTCTCATCAAATTCACACTACTAGGC 59.743 42.308 0.00 0.00 0.00 3.93
1519 3576 8.261492 ACATAGTGAAGTCTCATCAAATTCAC 57.739 34.615 8.02 8.02 46.36 3.18
1533 3590 4.772624 TGAGGCAAGTCTACATAGTGAAGT 59.227 41.667 0.00 0.00 0.00 3.01
1536 3593 5.204292 AGATGAGGCAAGTCTACATAGTGA 58.796 41.667 0.00 0.00 0.00 3.41
1541 3600 4.833478 ACAAGATGAGGCAAGTCTACAT 57.167 40.909 0.00 0.00 0.00 2.29
1544 3603 7.044181 CAGATAAACAAGATGAGGCAAGTCTA 58.956 38.462 0.00 0.00 0.00 2.59
1563 3622 4.607239 AGTTCTTACGGAGGTCCAGATAA 58.393 43.478 0.00 0.00 35.14 1.75
1566 3625 2.444421 GAGTTCTTACGGAGGTCCAGA 58.556 52.381 0.00 0.00 35.14 3.86
1576 3635 0.179134 CCCAGGAGCGAGTTCTTACG 60.179 60.000 0.00 0.00 0.00 3.18
1579 3638 2.665603 GCCCAGGAGCGAGTTCTT 59.334 61.111 0.00 0.00 0.00 2.52
1580 3639 2.516048 TAGGCCCAGGAGCGAGTTCT 62.516 60.000 0.00 0.00 0.00 3.01
1672 3731 5.445964 ACAATTACCTATGGATGGTGGAAC 58.554 41.667 0.00 0.00 38.42 3.62
1715 3774 9.829507 TTTTGGAAAATAAATTGTGTGACAGAT 57.170 25.926 0.00 0.00 0.00 2.90
1794 3853 6.183360 GGAAGGAACCATTCATGTGATTGTAG 60.183 42.308 0.00 0.00 0.00 2.74
1806 3865 4.344104 TGATTGAAGGGAAGGAACCATTC 58.656 43.478 0.00 0.00 46.62 2.67
1834 3893 7.676947 TCTAGTGTTGTTAGAGTGGCTAATTT 58.323 34.615 0.00 0.00 40.94 1.82
1843 3902 7.379750 GGTTCAAGATCTAGTGTTGTTAGAGT 58.620 38.462 0.00 0.00 33.11 3.24
1895 3954 8.841300 GGTAGGGATAAGAGATCAAAATTGTTC 58.159 37.037 0.00 0.00 0.00 3.18
1896 3955 8.560903 AGGTAGGGATAAGAGATCAAAATTGTT 58.439 33.333 0.00 0.00 0.00 2.83
1916 3975 7.095270 CCCTACGTGCTTTATTATTAGGTAGG 58.905 42.308 0.00 12.17 43.89 3.18
1952 4011 0.164217 TTACAAATTGTCGCGACGGC 59.836 50.000 31.88 11.57 0.00 5.68
2004 4063 4.267690 TGTGATTTAAATCTAGACTGCGCG 59.732 41.667 24.77 0.00 36.39 6.86
2005 4064 5.493735 GTGTGATTTAAATCTAGACTGCGC 58.506 41.667 24.77 0.00 36.39 6.09
2006 4065 5.276395 CGGTGTGATTTAAATCTAGACTGCG 60.276 44.000 24.77 15.63 36.39 5.18
2007 4066 5.810587 TCGGTGTGATTTAAATCTAGACTGC 59.189 40.000 24.77 13.36 36.39 4.40
2013 4072 7.972832 AACAGTTCGGTGTGATTTAAATCTA 57.027 32.000 24.77 13.65 36.39 1.98
2117 4179 9.245481 ACGGTTTAAAAGATATGGATGGTTTAA 57.755 29.630 0.00 0.00 0.00 1.52
2288 4359 8.953368 AATCGGAGTTACGGTTTAAAAGATAT 57.047 30.769 0.00 0.00 32.43 1.63
2409 4506 6.332630 CGCCTGTATGAAAGAAAAATGGATT 58.667 36.000 0.00 0.00 0.00 3.01
2498 4598 6.389906 CGATGTATTCAGAGGTATGCATGTA 58.610 40.000 10.16 0.00 29.74 2.29
2533 4633 7.340122 TCACACAAACCAAAATGATCTGTTA 57.660 32.000 0.00 0.00 0.00 2.41
2585 4685 2.290008 TGTTGCCGCTTATCCTTCTTCA 60.290 45.455 0.00 0.00 0.00 3.02
2590 4690 1.904287 TTGTGTTGCCGCTTATCCTT 58.096 45.000 0.00 0.00 0.00 3.36
2618 4718 6.255887 AGTCCATCTCTTTTATTTTAGCGACG 59.744 38.462 0.00 0.00 0.00 5.12
2619 4719 7.541122 AGTCCATCTCTTTTATTTTAGCGAC 57.459 36.000 0.00 0.00 0.00 5.19
2633 4733 5.485353 TCAAGACCACAATAAGTCCATCTCT 59.515 40.000 0.00 0.00 33.29 3.10
2670 4770 4.086199 ACACAACACACACTTTTAACCG 57.914 40.909 0.00 0.00 0.00 4.44
2738 4848 1.273886 GCGGCCAGAAACCCAATTTTA 59.726 47.619 2.24 0.00 0.00 1.52
2768 4878 5.066505 AGGGACTTTTATGCAAAATCGCTAG 59.933 40.000 0.00 0.00 35.39 3.42
2769 4879 4.947388 AGGGACTTTTATGCAAAATCGCTA 59.053 37.500 0.00 0.00 35.39 4.26
2825 4939 7.417496 AACGTTATCTCCAGAAAACACTTAC 57.583 36.000 0.00 0.00 0.00 2.34
2891 5022 3.263425 GGATAAGGATTAAGGATGGCGGA 59.737 47.826 0.00 0.00 32.17 5.54
3047 5228 4.379243 CGTGCTCTCCAACGCCCT 62.379 66.667 0.00 0.00 0.00 5.19
3269 5458 1.153168 AATCCCACAGCGATTCCCG 60.153 57.895 0.00 0.00 42.21 5.14
3354 5543 1.313129 GGCTCCTCTCCTCTTCCCT 59.687 63.158 0.00 0.00 0.00 4.20
3377 5570 0.824109 TCCAACTCCGATGCCTGTAG 59.176 55.000 0.00 0.00 0.00 2.74
3379 5572 1.599047 CTCCAACTCCGATGCCTGT 59.401 57.895 0.00 0.00 0.00 4.00
3385 5578 4.514577 CGCGCCTCCAACTCCGAT 62.515 66.667 0.00 0.00 0.00 4.18
3404 5597 2.068821 GGATCTCTCTGCCCAGCCA 61.069 63.158 0.00 0.00 0.00 4.75
3422 5615 2.125350 GAGCTCCCTTGCCGTCTG 60.125 66.667 0.87 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.