Multiple sequence alignment - TraesCS1D01G049200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G049200 chr1D 100.000 5286 0 0 1 5286 28822990 28817705 0.000000e+00 9762.0
1 TraesCS1D01G049200 chr1D 93.277 119 5 2 1960 2077 28820912 28820796 7.040000e-39 172.0
2 TraesCS1D01G049200 chr1D 93.277 119 5 2 2079 2195 28821031 28820914 7.040000e-39 172.0
3 TraesCS1D01G049200 chr1D 81.481 108 10 6 4605 4709 258091963 258092063 4.390000e-11 80.5
4 TraesCS1D01G049200 chr1A 95.801 2286 54 17 2638 4914 50928673 50930925 0.000000e+00 3651.0
5 TraesCS1D01G049200 chr1A 96.222 1694 37 9 967 2659 50926997 50928664 0.000000e+00 2748.0
6 TraesCS1D01G049200 chr1A 88.537 1832 126 32 3179 5000 29995182 29996939 0.000000e+00 2143.0
7 TraesCS1D01G049200 chr1A 92.583 1119 65 8 967 2077 29993404 29994512 0.000000e+00 1591.0
8 TraesCS1D01G049200 chr1A 93.226 620 18 7 227 822 50926162 50926781 0.000000e+00 891.0
9 TraesCS1D01G049200 chr1A 88.916 406 40 5 336 740 29955310 29955711 3.680000e-136 496.0
10 TraesCS1D01G049200 chr1A 88.732 355 22 3 3 341 29923748 29924100 8.190000e-113 418.0
11 TraesCS1D01G049200 chr1A 97.143 245 6 1 1 245 50924617 50924860 3.810000e-111 412.0
12 TraesCS1D01G049200 chr1A 77.961 667 108 26 1344 1986 50845316 50844665 1.070000e-101 381.0
13 TraesCS1D01G049200 chr1A 75.866 808 151 23 3165 3951 50962703 50963487 6.470000e-99 372.0
14 TraesCS1D01G049200 chr1A 77.567 633 107 24 1344 1954 29883621 29883002 3.030000e-92 350.0
15 TraesCS1D01G049200 chr1A 87.981 208 25 0 2928 3135 29994969 29995176 4.090000e-61 246.0
16 TraesCS1D01G049200 chr1A 94.017 117 7 0 2079 2195 50927972 50928088 1.510000e-40 178.0
17 TraesCS1D01G049200 chr1A 94.118 119 4 2 1960 2077 50928090 50928206 1.510000e-40 178.0
18 TraesCS1D01G049200 chr1A 89.051 137 7 4 2079 2207 29994388 29994524 4.240000e-36 163.0
19 TraesCS1D01G049200 chr1A 94.118 85 2 2 825 906 50926832 50926916 5.560000e-25 126.0
20 TraesCS1D01G049200 chr1A 82.474 97 10 2 4516 4605 29996384 29996480 1.580000e-10 78.7
21 TraesCS1D01G049200 chr1B 81.924 603 95 10 3679 4274 47508098 47507503 1.020000e-136 497.0
22 TraesCS1D01G049200 chr1B 78.549 634 99 24 1344 1954 47509945 47509326 2.990000e-102 383.0
23 TraesCS1D01G049200 chr1B 77.300 674 109 25 1334 1986 47544321 47544971 1.810000e-94 357.0
24 TraesCS1D01G049200 chr1B 98.305 59 1 0 2677 2735 527852538 527852596 2.600000e-18 104.0
25 TraesCS1D01G049200 chr1B 82.407 108 10 6 4605 4709 354987530 354987429 9.430000e-13 86.1
26 TraesCS1D01G049200 chr2D 92.857 238 15 2 4997 5232 603638513 603638750 1.410000e-90 344.0
27 TraesCS1D01G049200 chr2D 93.304 224 13 2 5013 5234 91797716 91797493 3.950000e-86 329.0
28 TraesCS1D01G049200 chr2D 93.243 222 13 2 5013 5232 105660121 105660342 5.110000e-85 326.0
29 TraesCS1D01G049200 chr2D 92.377 223 15 2 5012 5232 91790918 91790696 3.070000e-82 316.0
30 TraesCS1D01G049200 chr2D 90.417 240 20 3 4997 5234 603632917 603633155 3.970000e-81 313.0
31 TraesCS1D01G049200 chr2D 85.393 178 18 7 2314 2488 420985722 420985550 1.510000e-40 178.0
32 TraesCS1D01G049200 chr2D 96.825 63 1 1 2677 2738 643877420 643877482 2.600000e-18 104.0
33 TraesCS1D01G049200 chr2D 92.754 69 2 3 2677 2745 138159997 138159932 4.360000e-16 97.1
34 TraesCS1D01G049200 chr2D 92.982 57 4 0 2603 2659 155617826 155617882 3.390000e-12 84.2
35 TraesCS1D01G049200 chr2D 85.366 82 11 1 5003 5083 179652940 179653021 3.390000e-12 84.2
36 TraesCS1D01G049200 chr2B 92.195 205 14 2 5013 5215 155879698 155879494 6.700000e-74 289.0
37 TraesCS1D01G049200 chr2B 91.053 190 13 4 5012 5198 155829361 155829173 2.440000e-63 254.0
38 TraesCS1D01G049200 chr3D 91.358 162 12 2 2326 2486 449740441 449740281 2.480000e-53 220.0
39 TraesCS1D01G049200 chr3D 77.604 192 38 2 537 723 488117115 488117306 1.560000e-20 111.0
40 TraesCS1D01G049200 chr3D 96.825 63 1 1 2677 2739 244036433 244036372 2.600000e-18 104.0
41 TraesCS1D01G049200 chr6B 90.000 160 15 1 2326 2485 87080548 87080390 6.940000e-49 206.0
42 TraesCS1D01G049200 chr6B 89.222 167 14 4 2321 2485 281335139 281335303 6.940000e-49 206.0
43 TraesCS1D01G049200 chr6B 96.721 61 2 0 2677 2737 700192357 700192297 9.370000e-18 102.0
44 TraesCS1D01G049200 chr6D 89.024 164 16 2 2326 2488 25764480 25764318 8.980000e-48 202.0
45 TraesCS1D01G049200 chr4D 88.344 163 18 1 2326 2488 100572271 100572110 1.500000e-45 195.0
46 TraesCS1D01G049200 chr4D 83.929 112 7 10 4605 4713 277378248 277378145 4.360000e-16 97.1
47 TraesCS1D01G049200 chr4B 86.364 176 21 3 2313 2486 20589664 20589838 6.990000e-44 189.0
48 TraesCS1D01G049200 chr4B 82.000 100 8 7 4605 4702 242704137 242704046 5.680000e-10 76.8
49 TraesCS1D01G049200 chr3B 86.628 172 19 4 2316 2485 585793175 585793006 2.510000e-43 187.0
50 TraesCS1D01G049200 chr5A 82.065 184 33 0 540 723 654849185 654849368 1.970000e-34 158.0
51 TraesCS1D01G049200 chr5A 78.443 167 36 0 542 708 658301987 658302153 5.600000e-20 110.0
52 TraesCS1D01G049200 chr5A 89.706 68 5 2 5000 5067 12544368 12544433 9.430000e-13 86.1
53 TraesCS1D01G049200 chr5A 94.737 38 2 0 4596 4633 490590036 490590073 5.720000e-05 60.2
54 TraesCS1D01G049200 chr7D 80.473 169 33 0 540 708 199080927 199081095 4.300000e-26 130.0
55 TraesCS1D01G049200 chr7D 96.774 62 1 1 2673 2734 160131478 160131538 9.370000e-18 102.0
56 TraesCS1D01G049200 chr7D 98.276 58 1 0 2677 2734 210446219 210446276 9.370000e-18 102.0
57 TraesCS1D01G049200 chr7B 96.721 61 2 0 2677 2737 399892705 399892645 9.370000e-18 102.0
58 TraesCS1D01G049200 chr5B 78.481 158 33 1 540 697 290303329 290303485 9.370000e-18 102.0
59 TraesCS1D01G049200 chr4A 82.178 101 9 6 4605 4702 699792032 699791938 1.580000e-10 78.7
60 TraesCS1D01G049200 chr3A 80.488 82 16 0 603 684 746214621 746214540 4.420000e-06 63.9
61 TraesCS1D01G049200 chr2A 97.143 35 1 0 4598 4632 746759495 746759529 5.720000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G049200 chr1D 28817705 28822990 5285 True 3368.666667 9762 95.518000 1 5286 3 chr1D.!!$R1 5285
1 TraesCS1D01G049200 chr1A 50924617 50930925 6308 False 1169.142857 3651 94.949286 1 4914 7 chr1A.!!$F5 4913
2 TraesCS1D01G049200 chr1A 29993404 29996939 3535 False 844.340000 2143 88.125200 967 5000 5 chr1A.!!$F4 4033
3 TraesCS1D01G049200 chr1A 50844665 50845316 651 True 381.000000 381 77.961000 1344 1986 1 chr1A.!!$R2 642
4 TraesCS1D01G049200 chr1A 50962703 50963487 784 False 372.000000 372 75.866000 3165 3951 1 chr1A.!!$F3 786
5 TraesCS1D01G049200 chr1A 29883002 29883621 619 True 350.000000 350 77.567000 1344 1954 1 chr1A.!!$R1 610
6 TraesCS1D01G049200 chr1B 47507503 47509945 2442 True 440.000000 497 80.236500 1344 4274 2 chr1B.!!$R2 2930
7 TraesCS1D01G049200 chr1B 47544321 47544971 650 False 357.000000 357 77.300000 1334 1986 1 chr1B.!!$F1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 2320 0.396556 ATATTGCCCAACCCCGAACC 60.397 55.000 0.00 0.0 0.00 3.62 F
1808 3264 0.034896 TCTGCAGGTCTTTTCGGTCC 59.965 55.000 15.13 0.0 0.00 4.46 F
1843 3299 1.856873 AGAGGAATTGGGGTGGCCA 60.857 57.895 0.00 0.0 0.00 5.36 F
3098 4688 1.342819 ACAGCGGATAGGCAGATTCTC 59.657 52.381 0.00 0.0 34.64 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 4100 1.070275 GCCCTATAAACCGGACGGG 59.930 63.158 9.46 9.24 43.62 5.28 R
3098 4688 1.748493 CTGGAGGAGGAAAGAGACTCG 59.252 57.143 0.00 0.00 34.58 4.18 R
3288 4878 7.936584 TCCAAACGATTTAGAGACAAACAAAT 58.063 30.769 0.00 0.00 0.00 2.32 R
5062 6698 0.039437 TCTGTTCGACGCACCTCTTC 60.039 55.000 0.00 0.00 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 8.644318 ACTTACAACTCTTAAATATGGCGTAG 57.356 34.615 0.00 0.00 0.00 3.51
83 84 2.263540 GGCGTAGAACTTGGCCGA 59.736 61.111 0.00 0.00 35.59 5.54
85 86 1.152383 GGCGTAGAACTTGGCCGATC 61.152 60.000 0.00 0.00 35.59 3.69
135 136 9.778741 TTAACTCAAATAGTATGGAAGCCATAG 57.221 33.333 6.42 0.00 45.76 2.23
399 1720 3.328931 TCTCTTGGCCTTTTCTCATGACT 59.671 43.478 3.32 0.00 0.00 3.41
485 1806 0.601311 CCTTAGTGCTATGGAGGCGC 60.601 60.000 0.00 0.00 40.08 6.53
580 1901 1.286248 GGTGAGGTAGGGACAATGGT 58.714 55.000 0.00 0.00 0.00 3.55
624 1945 6.034577 CGATTCAGTGTTTCTAATCGTTGCTA 59.965 38.462 13.08 0.00 43.39 3.49
697 2018 2.218953 GCCATGGCAGTTGATGAATG 57.781 50.000 32.08 0.00 41.49 2.67
709 2030 6.349944 GCAGTTGATGAATGGATTGAAAGTCT 60.350 38.462 0.00 0.00 0.00 3.24
822 2167 7.302524 GCGGTGTATAATGTCAAAAGAAGAAA 58.697 34.615 0.00 0.00 0.00 2.52
823 2168 7.806014 GCGGTGTATAATGTCAAAAGAAGAAAA 59.194 33.333 0.00 0.00 0.00 2.29
833 2226 1.802337 AAGAAGAAAAACGGGGCGGC 61.802 55.000 0.00 0.00 0.00 6.53
834 2227 3.277211 GAAGAAAAACGGGGCGGCC 62.277 63.158 22.00 22.00 0.00 6.13
867 2260 3.467803 GGATCCAAATCGACCCAAGTAG 58.532 50.000 6.95 0.00 32.24 2.57
868 2261 3.467803 GATCCAAATCGACCCAAGTAGG 58.532 50.000 0.00 0.00 37.03 3.18
869 2262 1.065709 TCCAAATCGACCCAAGTAGGC 60.066 52.381 0.00 0.00 35.39 3.93
920 2316 0.887933 GCATATATTGCCCAACCCCG 59.112 55.000 0.08 0.00 46.15 5.73
921 2317 1.546773 GCATATATTGCCCAACCCCGA 60.547 52.381 0.00 0.00 46.15 5.14
922 2318 2.870175 CATATATTGCCCAACCCCGAA 58.130 47.619 0.00 0.00 0.00 4.30
923 2319 2.351706 TATATTGCCCAACCCCGAAC 57.648 50.000 0.00 0.00 0.00 3.95
924 2320 0.396556 ATATTGCCCAACCCCGAACC 60.397 55.000 0.00 0.00 0.00 3.62
930 2326 2.599281 CAACCCCGAACCCCCAAC 60.599 66.667 0.00 0.00 0.00 3.77
937 2333 4.696805 GAACCCCCAACCTGGCCC 62.697 72.222 0.00 0.00 35.79 5.80
944 2340 2.768022 CCAACCTGGCCCTATCCCC 61.768 68.421 0.00 0.00 0.00 4.81
947 2343 0.853586 AACCTGGCCCTATCCCCAAA 60.854 55.000 0.00 0.00 0.00 3.28
948 2344 0.630478 ACCTGGCCCTATCCCCAAAT 60.630 55.000 0.00 0.00 0.00 2.32
962 2369 1.214305 CCAAATCCCCCACCCAGAGA 61.214 60.000 0.00 0.00 0.00 3.10
975 2407 1.270041 CCCAGAGAAAGCGATCTAGGC 60.270 57.143 0.00 0.00 0.00 3.93
1120 2552 1.435168 AGAGAAGGGAGAGTGGTTCCT 59.565 52.381 0.00 0.00 35.01 3.36
1211 2643 1.513158 CGGTTGAGGAGAGCGACAT 59.487 57.895 0.00 0.00 40.15 3.06
1213 2645 0.179097 GGTTGAGGAGAGCGACATCC 60.179 60.000 0.00 0.00 35.71 3.51
1241 2673 1.202313 GGCAGTGGAGTCGATCAGTAC 60.202 57.143 0.00 0.00 0.00 2.73
1399 2831 2.041265 GAGCCAAGGGGGAGGAGA 59.959 66.667 0.00 0.00 40.01 3.71
1553 2997 0.755698 GATCCTACCGACTGGCTGGA 60.756 60.000 0.00 0.00 42.00 3.86
1592 3036 2.571653 ACCGTGAATTCTGGGATCTTCA 59.428 45.455 18.41 0.00 0.00 3.02
1593 3037 3.200825 ACCGTGAATTCTGGGATCTTCAT 59.799 43.478 18.41 0.00 30.97 2.57
1599 3043 1.600058 TCTGGGATCTTCATTGGGCT 58.400 50.000 0.00 0.00 0.00 5.19
1732 3179 2.947652 ACATCAATCTGCAGCGCTTATT 59.052 40.909 7.50 2.39 0.00 1.40
1755 3202 1.366111 CCCATGCTTTACACGGACGG 61.366 60.000 0.00 0.00 31.42 4.79
1808 3264 0.034896 TCTGCAGGTCTTTTCGGTCC 59.965 55.000 15.13 0.00 0.00 4.46
1843 3299 1.856873 AGAGGAATTGGGGTGGCCA 60.857 57.895 0.00 0.00 0.00 5.36
1998 3455 3.933332 GCCTATGTTACCTCTGTGAACAC 59.067 47.826 0.00 0.00 35.99 3.32
2060 3517 2.398588 TGTACTGGGCTATTGGGAGAG 58.601 52.381 0.00 0.00 0.00 3.20
2061 3518 2.023404 TGTACTGGGCTATTGGGAGAGA 60.023 50.000 0.00 0.00 0.00 3.10
2261 3749 4.819630 ACATACCCTTGGCATATGTTAACG 59.180 41.667 4.29 0.00 36.37 3.18
2346 3835 6.488769 TGCTCCTTCCGTTCCTAAAATATA 57.511 37.500 0.00 0.00 0.00 0.86
2532 4021 3.193267 GCTACCAAGTTCCATGCATGAAA 59.807 43.478 28.31 12.06 0.00 2.69
2533 4022 3.947910 ACCAAGTTCCATGCATGAAAG 57.052 42.857 28.31 11.58 0.00 2.62
2534 4023 2.028748 ACCAAGTTCCATGCATGAAAGC 60.029 45.455 28.31 16.45 0.00 3.51
2535 4024 2.232941 CCAAGTTCCATGCATGAAAGCT 59.767 45.455 28.31 18.31 34.99 3.74
2778 4299 9.075678 GAGAAATCATACCAAATGATCAATCCT 57.924 33.333 0.00 0.00 37.75 3.24
3098 4688 1.342819 ACAGCGGATAGGCAGATTCTC 59.657 52.381 0.00 0.00 34.64 2.87
3276 4866 3.244078 TGCTTTAGAGTATATGCACCCCG 60.244 47.826 0.00 0.00 0.00 5.73
3312 4911 8.574196 AATTTGTTTGTCTCTAAATCGTTTGG 57.426 30.769 0.00 0.00 0.00 3.28
3906 5521 2.927871 GCACAGTGGAATTGACATTGGC 60.928 50.000 1.84 0.00 30.79 4.52
4151 5772 3.204306 TGGCAATGGCAAATTGTTTGA 57.796 38.095 7.14 0.00 43.26 2.69
4170 5791 4.705110 TGAAGGATCAAACTGTTGAGGA 57.295 40.909 0.00 0.00 46.75 3.71
4188 5809 6.992063 TGAGGAAGATTCTAAAGCATTCAC 57.008 37.500 0.00 0.00 0.00 3.18
4212 5833 0.918310 AGGGAAGCCTCCAGAAGCAT 60.918 55.000 3.19 0.00 44.51 3.79
4231 5852 1.890876 TGCGTATGCTTGAAGTTGGT 58.109 45.000 8.69 0.00 43.34 3.67
4276 5897 2.670148 ATGGTCTCTTGTCCCGGCC 61.670 63.158 0.00 0.00 0.00 6.13
4305 5926 1.215423 GGGAGGATGTAATGGCTTGGT 59.785 52.381 0.00 0.00 0.00 3.67
4306 5927 2.358195 GGGAGGATGTAATGGCTTGGTT 60.358 50.000 0.00 0.00 0.00 3.67
4308 5929 4.532834 GGAGGATGTAATGGCTTGGTTTA 58.467 43.478 0.00 0.00 0.00 2.01
4309 5930 4.580580 GGAGGATGTAATGGCTTGGTTTAG 59.419 45.833 0.00 0.00 0.00 1.85
4311 5932 5.580022 AGGATGTAATGGCTTGGTTTAGTT 58.420 37.500 0.00 0.00 0.00 2.24
4312 5933 6.727394 AGGATGTAATGGCTTGGTTTAGTTA 58.273 36.000 0.00 0.00 0.00 2.24
4313 5934 7.179269 AGGATGTAATGGCTTGGTTTAGTTAA 58.821 34.615 0.00 0.00 0.00 2.01
4315 5936 7.920682 GGATGTAATGGCTTGGTTTAGTTAATG 59.079 37.037 0.00 0.00 0.00 1.90
4316 5937 7.164230 TGTAATGGCTTGGTTTAGTTAATGG 57.836 36.000 0.00 0.00 0.00 3.16
4317 5938 6.948886 TGTAATGGCTTGGTTTAGTTAATGGA 59.051 34.615 0.00 0.00 0.00 3.41
4318 5939 7.617723 TGTAATGGCTTGGTTTAGTTAATGGAT 59.382 33.333 0.00 0.00 0.00 3.41
4319 5940 9.127277 GTAATGGCTTGGTTTAGTTAATGGATA 57.873 33.333 0.00 0.00 0.00 2.59
4320 5941 8.602472 AATGGCTTGGTTTAGTTAATGGATAA 57.398 30.769 0.00 0.00 0.00 1.75
4321 5942 8.782137 ATGGCTTGGTTTAGTTAATGGATAAT 57.218 30.769 0.00 0.00 0.00 1.28
4322 5943 8.602472 TGGCTTGGTTTAGTTAATGGATAATT 57.398 30.769 0.00 0.00 0.00 1.40
4323 5944 8.474025 TGGCTTGGTTTAGTTAATGGATAATTG 58.526 33.333 0.00 0.00 0.00 2.32
4324 5945 7.438160 GGCTTGGTTTAGTTAATGGATAATTGC 59.562 37.037 0.00 0.00 0.00 3.56
4325 5946 8.197439 GCTTGGTTTAGTTAATGGATAATTGCT 58.803 33.333 0.00 0.00 0.00 3.91
4326 5947 9.520204 CTTGGTTTAGTTAATGGATAATTGCTG 57.480 33.333 0.00 0.00 0.00 4.41
4327 5948 8.588290 TGGTTTAGTTAATGGATAATTGCTGT 57.412 30.769 0.00 0.00 0.00 4.40
4328 5949 9.030452 TGGTTTAGTTAATGGATAATTGCTGTT 57.970 29.630 0.00 0.00 0.00 3.16
4332 5953 7.259290 AGTTAATGGATAATTGCTGTTACCG 57.741 36.000 0.00 0.00 0.00 4.02
4333 5954 6.826741 AGTTAATGGATAATTGCTGTTACCGT 59.173 34.615 0.00 0.00 0.00 4.83
4334 5955 5.499139 AATGGATAATTGCTGTTACCGTG 57.501 39.130 0.00 0.00 0.00 4.94
4335 5956 3.945346 TGGATAATTGCTGTTACCGTGT 58.055 40.909 0.00 0.00 0.00 4.49
4336 5957 4.328536 TGGATAATTGCTGTTACCGTGTT 58.671 39.130 0.00 0.00 0.00 3.32
4337 5958 4.155099 TGGATAATTGCTGTTACCGTGTTG 59.845 41.667 0.00 0.00 0.00 3.33
4338 5959 4.438200 GGATAATTGCTGTTACCGTGTTGG 60.438 45.833 0.00 0.00 46.41 3.77
4403 6024 3.876914 AGTGATGTGTGTTGTTAGTGGTG 59.123 43.478 0.00 0.00 0.00 4.17
4418 6039 2.110011 AGTGGTGCCTTTATCCTGGTTT 59.890 45.455 0.00 0.00 0.00 3.27
4536 6157 6.373216 TGACTATGTAATGTGGGCAAGTTAAC 59.627 38.462 0.00 0.00 0.00 2.01
4613 6237 4.291249 TGGGCAAATTAAGTTACTCCCTCT 59.709 41.667 15.95 0.00 33.77 3.69
4649 6275 5.888691 TGACGCACAATTGTTGGTATAAT 57.111 34.783 8.77 0.00 34.12 1.28
4718 6346 5.817816 CGAGGGAGCACTAGATTTTATTTGT 59.182 40.000 0.00 0.00 0.00 2.83
4914 6548 4.395959 TCCGTCAGTCAGTAAACACTTT 57.604 40.909 0.00 0.00 0.00 2.66
4988 6624 6.497437 TGTTCAATCAGTCAACTTGTCAATG 58.503 36.000 0.00 0.00 0.00 2.82
5000 6636 5.808042 ACTTGTCAATGCTATGCTACTTG 57.192 39.130 0.00 0.00 0.00 3.16
5001 6637 5.248640 ACTTGTCAATGCTATGCTACTTGT 58.751 37.500 0.00 0.00 0.00 3.16
5002 6638 5.707298 ACTTGTCAATGCTATGCTACTTGTT 59.293 36.000 0.00 0.00 0.00 2.83
5003 6639 6.207417 ACTTGTCAATGCTATGCTACTTGTTT 59.793 34.615 0.00 0.00 0.00 2.83
5004 6640 6.573664 TGTCAATGCTATGCTACTTGTTTT 57.426 33.333 0.00 0.00 0.00 2.43
5005 6641 6.380995 TGTCAATGCTATGCTACTTGTTTTG 58.619 36.000 0.00 0.00 0.00 2.44
5006 6642 6.206438 TGTCAATGCTATGCTACTTGTTTTGA 59.794 34.615 0.00 0.00 0.00 2.69
5007 6643 6.744537 GTCAATGCTATGCTACTTGTTTTGAG 59.255 38.462 0.00 0.00 0.00 3.02
5008 6644 6.430925 TCAATGCTATGCTACTTGTTTTGAGT 59.569 34.615 0.00 0.00 0.00 3.41
5009 6645 5.611796 TGCTATGCTACTTGTTTTGAGTG 57.388 39.130 0.00 0.00 0.00 3.51
5010 6646 5.304778 TGCTATGCTACTTGTTTTGAGTGA 58.695 37.500 0.00 0.00 0.00 3.41
5011 6647 5.762711 TGCTATGCTACTTGTTTTGAGTGAA 59.237 36.000 0.00 0.00 0.00 3.18
5012 6648 6.262049 TGCTATGCTACTTGTTTTGAGTGAAA 59.738 34.615 0.00 0.00 0.00 2.69
5013 6649 7.138736 GCTATGCTACTTGTTTTGAGTGAAAA 58.861 34.615 0.00 0.00 0.00 2.29
5014 6650 7.324616 GCTATGCTACTTGTTTTGAGTGAAAAG 59.675 37.037 0.00 0.00 34.10 2.27
5015 6651 6.751514 TGCTACTTGTTTTGAGTGAAAAGA 57.248 33.333 0.00 0.00 34.10 2.52
5016 6652 7.333528 TGCTACTTGTTTTGAGTGAAAAGAT 57.666 32.000 0.00 0.00 34.10 2.40
5017 6653 7.417612 TGCTACTTGTTTTGAGTGAAAAGATC 58.582 34.615 0.00 0.00 34.10 2.75
5018 6654 7.066887 TGCTACTTGTTTTGAGTGAAAAGATCA 59.933 33.333 0.00 0.00 34.10 2.92
5019 6655 7.915397 GCTACTTGTTTTGAGTGAAAAGATCAA 59.085 33.333 0.00 0.00 40.50 2.57
5020 6656 9.226345 CTACTTGTTTTGAGTGAAAAGATCAAC 57.774 33.333 0.00 0.00 40.50 3.18
5021 6657 7.830739 ACTTGTTTTGAGTGAAAAGATCAACT 58.169 30.769 0.00 0.00 40.50 3.16
5022 6658 8.306761 ACTTGTTTTGAGTGAAAAGATCAACTT 58.693 29.630 0.00 0.00 40.50 2.66
5023 6659 8.464770 TTGTTTTGAGTGAAAAGATCAACTTG 57.535 30.769 0.00 0.00 40.50 3.16
5024 6660 7.601856 TGTTTTGAGTGAAAAGATCAACTTGT 58.398 30.769 0.00 0.00 40.50 3.16
5025 6661 8.735315 TGTTTTGAGTGAAAAGATCAACTTGTA 58.265 29.630 0.00 0.00 40.50 2.41
5026 6662 9.736023 GTTTTGAGTGAAAAGATCAACTTGTAT 57.264 29.630 0.00 0.00 40.50 2.29
5028 6664 9.734620 TTTGAGTGAAAAGATCAACTTGTATTG 57.265 29.630 0.00 0.00 40.50 1.90
5029 6665 8.675705 TGAGTGAAAAGATCAACTTGTATTGA 57.324 30.769 0.00 0.00 42.62 2.57
5032 6668 9.903682 AGTGAAAAGATCAACTTGTATTGATTG 57.096 29.630 2.73 0.00 46.88 2.67
5033 6669 9.132521 GTGAAAAGATCAACTTGTATTGATTGG 57.867 33.333 2.73 0.00 46.88 3.16
5034 6670 8.859090 TGAAAAGATCAACTTGTATTGATTGGT 58.141 29.630 2.73 0.00 46.88 3.67
5037 6673 9.739276 AAAGATCAACTTGTATTGATTGGTAGA 57.261 29.630 2.73 0.00 46.88 2.59
5038 6674 9.739276 AAGATCAACTTGTATTGATTGGTAGAA 57.261 29.630 2.73 0.00 46.88 2.10
5039 6675 9.739276 AGATCAACTTGTATTGATTGGTAGAAA 57.261 29.630 2.73 0.00 46.88 2.52
5040 6676 9.994432 GATCAACTTGTATTGATTGGTAGAAAG 57.006 33.333 2.73 0.00 46.88 2.62
5041 6677 9.739276 ATCAACTTGTATTGATTGGTAGAAAGA 57.261 29.630 0.00 0.00 45.10 2.52
5042 6678 9.219603 TCAACTTGTATTGATTGGTAGAAAGAG 57.780 33.333 0.00 0.00 33.62 2.85
5043 6679 9.003658 CAACTTGTATTGATTGGTAGAAAGAGT 57.996 33.333 0.00 0.00 0.00 3.24
5045 6681 9.654663 ACTTGTATTGATTGGTAGAAAGAGTAC 57.345 33.333 0.00 0.00 0.00 2.73
5046 6682 9.653287 CTTGTATTGATTGGTAGAAAGAGTACA 57.347 33.333 0.00 0.00 0.00 2.90
5070 6706 9.784531 ACAATTTATATATGACTGGAAGAGGTG 57.215 33.333 0.00 0.00 37.43 4.00
5071 6707 8.725148 CAATTTATATATGACTGGAAGAGGTGC 58.275 37.037 0.00 0.00 37.43 5.01
5072 6708 2.898729 ATATGACTGGAAGAGGTGCG 57.101 50.000 0.00 0.00 37.43 5.34
5073 6709 1.557099 TATGACTGGAAGAGGTGCGT 58.443 50.000 0.00 0.00 37.43 5.24
5074 6710 0.247736 ATGACTGGAAGAGGTGCGTC 59.752 55.000 0.00 0.00 37.43 5.19
5075 6711 1.444553 GACTGGAAGAGGTGCGTCG 60.445 63.158 0.00 0.00 37.43 5.12
5076 6712 1.863662 GACTGGAAGAGGTGCGTCGA 61.864 60.000 0.00 0.00 37.43 4.20
5077 6713 1.289066 CTGGAAGAGGTGCGTCGAA 59.711 57.895 0.00 0.00 34.07 3.71
5078 6714 1.006571 TGGAAGAGGTGCGTCGAAC 60.007 57.895 0.00 0.00 0.00 3.95
5079 6715 1.006571 GGAAGAGGTGCGTCGAACA 60.007 57.895 5.55 0.00 0.00 3.18
5080 6716 1.009389 GGAAGAGGTGCGTCGAACAG 61.009 60.000 5.55 0.00 0.00 3.16
5081 6717 0.039437 GAAGAGGTGCGTCGAACAGA 60.039 55.000 5.55 0.00 0.00 3.41
5082 6718 0.318784 AAGAGGTGCGTCGAACAGAC 60.319 55.000 5.55 0.00 46.16 3.51
5092 6728 3.955887 GTCGAACAGACTTGACGATTC 57.044 47.619 0.00 0.00 46.13 2.52
5093 6729 2.338813 GTCGAACAGACTTGACGATTCG 59.661 50.000 4.14 4.14 46.13 3.34
5094 6730 2.224784 TCGAACAGACTTGACGATTCGA 59.775 45.455 13.95 2.99 43.90 3.71
5095 6731 2.977829 CGAACAGACTTGACGATTCGAA 59.022 45.455 13.95 0.00 40.96 3.71
5096 6732 3.181552 CGAACAGACTTGACGATTCGAAC 60.182 47.826 13.95 7.03 40.96 3.95
5097 6733 3.364889 ACAGACTTGACGATTCGAACA 57.635 42.857 13.95 9.54 0.00 3.18
5098 6734 3.309388 ACAGACTTGACGATTCGAACAG 58.691 45.455 13.95 7.26 0.00 3.16
5099 6735 3.243434 ACAGACTTGACGATTCGAACAGT 60.243 43.478 13.95 10.33 0.00 3.55
5100 6736 3.362237 CAGACTTGACGATTCGAACAGTC 59.638 47.826 21.22 21.22 0.00 3.51
5101 6737 3.004419 AGACTTGACGATTCGAACAGTCA 59.996 43.478 24.75 24.75 41.24 3.41
5102 6738 3.914312 ACTTGACGATTCGAACAGTCAT 58.086 40.909 27.31 16.76 42.29 3.06
5103 6739 5.055642 ACTTGACGATTCGAACAGTCATA 57.944 39.130 27.31 19.65 42.29 2.15
5104 6740 4.857588 ACTTGACGATTCGAACAGTCATAC 59.142 41.667 27.31 9.95 42.29 2.39
5105 6741 3.766151 TGACGATTCGAACAGTCATACC 58.234 45.455 24.75 7.96 38.52 2.73
5106 6742 3.114065 GACGATTCGAACAGTCATACCC 58.886 50.000 22.40 2.84 34.09 3.69
5107 6743 2.758979 ACGATTCGAACAGTCATACCCT 59.241 45.455 13.95 0.00 0.00 4.34
5108 6744 3.949754 ACGATTCGAACAGTCATACCCTA 59.050 43.478 13.95 0.00 0.00 3.53
5109 6745 4.400251 ACGATTCGAACAGTCATACCCTAA 59.600 41.667 13.95 0.00 0.00 2.69
5110 6746 4.976731 CGATTCGAACAGTCATACCCTAAG 59.023 45.833 0.00 0.00 0.00 2.18
5111 6747 5.450137 CGATTCGAACAGTCATACCCTAAGT 60.450 44.000 0.00 0.00 0.00 2.24
5112 6748 4.978083 TCGAACAGTCATACCCTAAGTC 57.022 45.455 0.00 0.00 0.00 3.01
5113 6749 3.376234 TCGAACAGTCATACCCTAAGTCG 59.624 47.826 0.00 0.00 0.00 4.18
5114 6750 3.488721 CGAACAGTCATACCCTAAGTCGG 60.489 52.174 0.00 0.00 0.00 4.79
5115 6751 3.097342 ACAGTCATACCCTAAGTCGGT 57.903 47.619 0.00 0.00 37.40 4.69
5116 6752 3.438183 ACAGTCATACCCTAAGTCGGTT 58.562 45.455 0.00 0.00 34.66 4.44
5117 6753 3.194968 ACAGTCATACCCTAAGTCGGTTG 59.805 47.826 0.00 0.00 34.66 3.77
5118 6754 2.167900 AGTCATACCCTAAGTCGGTTGC 59.832 50.000 0.00 0.00 34.66 4.17
5119 6755 2.167900 GTCATACCCTAAGTCGGTTGCT 59.832 50.000 0.00 0.00 34.66 3.91
5120 6756 3.382546 GTCATACCCTAAGTCGGTTGCTA 59.617 47.826 0.00 0.00 34.66 3.49
5121 6757 4.025360 TCATACCCTAAGTCGGTTGCTAA 58.975 43.478 0.00 0.00 34.66 3.09
5122 6758 4.652421 TCATACCCTAAGTCGGTTGCTAAT 59.348 41.667 0.00 0.00 34.66 1.73
5123 6759 3.994931 ACCCTAAGTCGGTTGCTAATT 57.005 42.857 0.00 0.00 0.00 1.40
5124 6760 6.324512 TCATACCCTAAGTCGGTTGCTAATTA 59.675 38.462 0.00 0.00 34.66 1.40
5125 6761 4.763073 ACCCTAAGTCGGTTGCTAATTAC 58.237 43.478 0.00 0.00 0.00 1.89
5126 6762 4.223477 ACCCTAAGTCGGTTGCTAATTACA 59.777 41.667 0.00 0.00 0.00 2.41
5127 6763 4.809426 CCCTAAGTCGGTTGCTAATTACAG 59.191 45.833 0.00 0.00 0.00 2.74
5128 6764 4.809426 CCTAAGTCGGTTGCTAATTACAGG 59.191 45.833 0.00 0.00 0.00 4.00
5129 6765 3.261981 AGTCGGTTGCTAATTACAGGG 57.738 47.619 0.00 0.00 0.00 4.45
5130 6766 2.835764 AGTCGGTTGCTAATTACAGGGA 59.164 45.455 0.00 0.00 0.00 4.20
5131 6767 3.454812 AGTCGGTTGCTAATTACAGGGAT 59.545 43.478 0.00 0.00 0.00 3.85
5132 6768 3.560068 GTCGGTTGCTAATTACAGGGATG 59.440 47.826 0.00 0.00 0.00 3.51
5133 6769 2.290641 CGGTTGCTAATTACAGGGATGC 59.709 50.000 0.00 0.00 0.00 3.91
5134 6770 3.287222 GGTTGCTAATTACAGGGATGCA 58.713 45.455 0.00 0.00 0.00 3.96
5135 6771 3.699038 GGTTGCTAATTACAGGGATGCAA 59.301 43.478 0.00 2.85 36.74 4.08
5136 6772 4.981806 TTGCTAATTACAGGGATGCAAC 57.018 40.909 0.00 0.00 34.63 4.17
5137 6773 3.961849 TGCTAATTACAGGGATGCAACA 58.038 40.909 0.00 0.00 0.00 3.33
5138 6774 3.947196 TGCTAATTACAGGGATGCAACAG 59.053 43.478 0.00 0.00 0.00 3.16
5139 6775 3.947834 GCTAATTACAGGGATGCAACAGT 59.052 43.478 0.00 0.00 0.00 3.55
5140 6776 4.399303 GCTAATTACAGGGATGCAACAGTT 59.601 41.667 0.00 0.00 0.00 3.16
5141 6777 5.105756 GCTAATTACAGGGATGCAACAGTTT 60.106 40.000 0.00 0.00 0.00 2.66
5142 6778 6.094881 GCTAATTACAGGGATGCAACAGTTTA 59.905 38.462 0.00 0.00 0.00 2.01
5143 6779 6.909550 AATTACAGGGATGCAACAGTTTAA 57.090 33.333 0.00 0.00 0.00 1.52
5144 6780 6.909550 ATTACAGGGATGCAACAGTTTAAA 57.090 33.333 0.00 0.00 0.00 1.52
5145 6781 6.716934 TTACAGGGATGCAACAGTTTAAAA 57.283 33.333 0.00 0.00 0.00 1.52
5146 6782 5.200368 ACAGGGATGCAACAGTTTAAAAG 57.800 39.130 0.00 0.00 0.00 2.27
5147 6783 4.892934 ACAGGGATGCAACAGTTTAAAAGA 59.107 37.500 0.00 0.00 0.00 2.52
5148 6784 5.010012 ACAGGGATGCAACAGTTTAAAAGAG 59.990 40.000 0.00 0.00 0.00 2.85
5149 6785 5.241506 CAGGGATGCAACAGTTTAAAAGAGA 59.758 40.000 0.00 0.00 0.00 3.10
5150 6786 5.241728 AGGGATGCAACAGTTTAAAAGAGAC 59.758 40.000 0.00 0.00 0.00 3.36
5151 6787 5.009610 GGGATGCAACAGTTTAAAAGAGACA 59.990 40.000 0.00 0.00 0.00 3.41
5152 6788 5.915196 GGATGCAACAGTTTAAAAGAGACAC 59.085 40.000 0.00 0.00 0.00 3.67
5153 6789 4.904116 TGCAACAGTTTAAAAGAGACACG 58.096 39.130 0.00 0.00 0.00 4.49
5154 6790 4.393680 TGCAACAGTTTAAAAGAGACACGT 59.606 37.500 0.00 0.00 0.00 4.49
5155 6791 4.962151 GCAACAGTTTAAAAGAGACACGTC 59.038 41.667 0.00 0.00 0.00 4.34
5156 6792 5.499047 CAACAGTTTAAAAGAGACACGTCC 58.501 41.667 0.00 0.00 0.00 4.79
5157 6793 4.124970 ACAGTTTAAAAGAGACACGTCCC 58.875 43.478 0.00 0.00 0.00 4.46
5158 6794 4.141779 ACAGTTTAAAAGAGACACGTCCCT 60.142 41.667 0.00 0.00 0.00 4.20
5159 6795 4.814771 CAGTTTAAAAGAGACACGTCCCTT 59.185 41.667 0.00 0.00 0.00 3.95
5160 6796 4.814771 AGTTTAAAAGAGACACGTCCCTTG 59.185 41.667 0.00 0.00 27.81 3.61
5161 6797 1.594331 AAAAGAGACACGTCCCTTGC 58.406 50.000 0.00 0.00 27.81 4.01
5162 6798 0.759346 AAAGAGACACGTCCCTTGCT 59.241 50.000 0.00 0.00 27.81 3.91
5163 6799 1.629043 AAGAGACACGTCCCTTGCTA 58.371 50.000 0.00 0.00 0.00 3.49
5164 6800 1.853963 AGAGACACGTCCCTTGCTAT 58.146 50.000 0.00 0.00 0.00 2.97
5165 6801 1.478510 AGAGACACGTCCCTTGCTATG 59.521 52.381 0.00 0.00 0.00 2.23
5166 6802 0.108138 AGACACGTCCCTTGCTATGC 60.108 55.000 0.00 0.00 0.00 3.14
5167 6803 0.391130 GACACGTCCCTTGCTATGCA 60.391 55.000 0.00 0.00 36.47 3.96
5168 6804 0.036164 ACACGTCCCTTGCTATGCAA 59.964 50.000 4.87 4.87 46.80 4.08
5169 6805 0.447801 CACGTCCCTTGCTATGCAAC 59.552 55.000 0.45 0.00 43.99 4.17
5170 6806 0.676782 ACGTCCCTTGCTATGCAACC 60.677 55.000 0.45 0.00 43.99 3.77
5171 6807 1.705337 CGTCCCTTGCTATGCAACCG 61.705 60.000 0.45 0.00 43.99 4.44
5172 6808 1.748879 TCCCTTGCTATGCAACCGC 60.749 57.895 0.45 0.00 43.99 5.68
5181 6817 3.597072 TGCAACCGCACAGTGTTT 58.403 50.000 1.61 0.00 45.36 2.83
5182 6818 2.781911 TGCAACCGCACAGTGTTTA 58.218 47.368 1.61 0.00 45.36 2.01
5183 6819 0.660488 TGCAACCGCACAGTGTTTAG 59.340 50.000 1.61 0.00 45.36 1.85
5184 6820 0.040425 GCAACCGCACAGTGTTTAGG 60.040 55.000 1.61 0.00 38.36 2.69
5185 6821 0.040425 CAACCGCACAGTGTTTAGGC 60.040 55.000 1.61 0.00 0.00 3.93
5186 6822 0.464735 AACCGCACAGTGTTTAGGCA 60.465 50.000 1.61 0.00 0.00 4.75
5187 6823 0.464735 ACCGCACAGTGTTTAGGCAA 60.465 50.000 1.61 0.00 0.00 4.52
5188 6824 0.665835 CCGCACAGTGTTTAGGCAAA 59.334 50.000 1.61 0.00 0.00 3.68
5189 6825 1.066303 CCGCACAGTGTTTAGGCAAAA 59.934 47.619 1.61 0.00 0.00 2.44
5190 6826 2.384382 CGCACAGTGTTTAGGCAAAAG 58.616 47.619 1.61 0.00 0.00 2.27
5191 6827 2.223479 CGCACAGTGTTTAGGCAAAAGT 60.223 45.455 1.61 0.00 0.00 2.66
5192 6828 3.002862 CGCACAGTGTTTAGGCAAAAGTA 59.997 43.478 1.61 0.00 0.00 2.24
5193 6829 4.537015 GCACAGTGTTTAGGCAAAAGTAG 58.463 43.478 1.61 0.00 0.00 2.57
5194 6830 4.274950 GCACAGTGTTTAGGCAAAAGTAGA 59.725 41.667 1.61 0.00 0.00 2.59
5195 6831 5.048713 GCACAGTGTTTAGGCAAAAGTAGAT 60.049 40.000 1.61 0.00 0.00 1.98
5196 6832 6.515035 GCACAGTGTTTAGGCAAAAGTAGATT 60.515 38.462 1.61 0.00 0.00 2.40
5197 6833 7.078228 CACAGTGTTTAGGCAAAAGTAGATTC 58.922 38.462 0.00 0.00 0.00 2.52
5198 6834 6.206829 ACAGTGTTTAGGCAAAAGTAGATTCC 59.793 38.462 0.00 0.00 0.00 3.01
5199 6835 6.431234 CAGTGTTTAGGCAAAAGTAGATTCCT 59.569 38.462 0.00 0.00 0.00 3.36
5200 6836 7.004691 AGTGTTTAGGCAAAAGTAGATTCCTT 58.995 34.615 0.00 0.00 0.00 3.36
5201 6837 8.161425 AGTGTTTAGGCAAAAGTAGATTCCTTA 58.839 33.333 0.00 0.00 0.00 2.69
5202 6838 8.957466 GTGTTTAGGCAAAAGTAGATTCCTTAT 58.043 33.333 0.00 0.00 0.00 1.73
5203 6839 9.528489 TGTTTAGGCAAAAGTAGATTCCTTATT 57.472 29.630 0.00 0.00 0.00 1.40
5250 6886 9.942850 TTCTAACACTACTTTCATTCATCATGA 57.057 29.630 0.00 0.00 40.43 3.07
5251 6887 9.371136 TCTAACACTACTTTCATTCATCATGAC 57.629 33.333 0.00 0.00 41.98 3.06
5252 6888 6.653273 ACACTACTTTCATTCATCATGACG 57.347 37.500 0.00 0.00 41.98 4.35
5253 6889 6.166279 ACACTACTTTCATTCATCATGACGT 58.834 36.000 0.00 0.00 41.98 4.34
5254 6890 7.320399 ACACTACTTTCATTCATCATGACGTA 58.680 34.615 0.00 0.00 41.98 3.57
5255 6891 7.275779 ACACTACTTTCATTCATCATGACGTAC 59.724 37.037 0.00 0.00 41.98 3.67
5256 6892 7.275560 CACTACTTTCATTCATCATGACGTACA 59.724 37.037 0.00 0.00 41.98 2.90
5257 6893 6.408858 ACTTTCATTCATCATGACGTACAC 57.591 37.500 0.00 0.00 41.98 2.90
5258 6894 6.166279 ACTTTCATTCATCATGACGTACACT 58.834 36.000 0.00 0.00 41.98 3.55
5259 6895 6.091305 ACTTTCATTCATCATGACGTACACTG 59.909 38.462 0.00 0.00 41.98 3.66
5260 6896 5.323371 TCATTCATCATGACGTACACTGA 57.677 39.130 0.00 0.00 36.94 3.41
5261 6897 5.343249 TCATTCATCATGACGTACACTGAG 58.657 41.667 0.00 0.00 36.94 3.35
5262 6898 5.125417 TCATTCATCATGACGTACACTGAGA 59.875 40.000 0.00 0.00 36.94 3.27
5263 6899 5.385509 TTCATCATGACGTACACTGAGAA 57.614 39.130 0.00 0.00 0.00 2.87
5264 6900 5.582689 TCATCATGACGTACACTGAGAAT 57.417 39.130 0.00 0.00 0.00 2.40
5265 6901 5.965922 TCATCATGACGTACACTGAGAATT 58.034 37.500 0.00 0.00 0.00 2.17
5266 6902 6.398095 TCATCATGACGTACACTGAGAATTT 58.602 36.000 0.00 0.00 0.00 1.82
5267 6903 6.531594 TCATCATGACGTACACTGAGAATTTC 59.468 38.462 0.00 0.00 0.00 2.17
5268 6904 5.778862 TCATGACGTACACTGAGAATTTCA 58.221 37.500 0.00 0.00 0.00 2.69
5269 6905 6.398095 TCATGACGTACACTGAGAATTTCAT 58.602 36.000 0.00 0.00 34.68 2.57
5270 6906 7.543756 TCATGACGTACACTGAGAATTTCATA 58.456 34.615 0.00 0.00 34.68 2.15
5271 6907 8.197439 TCATGACGTACACTGAGAATTTCATAT 58.803 33.333 0.00 0.00 34.68 1.78
5272 6908 8.820933 CATGACGTACACTGAGAATTTCATATT 58.179 33.333 0.00 0.00 34.68 1.28
5273 6909 8.185003 TGACGTACACTGAGAATTTCATATTG 57.815 34.615 0.00 0.00 34.68 1.90
5274 6910 7.817478 TGACGTACACTGAGAATTTCATATTGT 59.183 33.333 0.00 1.20 34.68 2.71
5275 6911 8.186178 ACGTACACTGAGAATTTCATATTGTC 57.814 34.615 0.00 0.00 34.68 3.18
5276 6912 7.817478 ACGTACACTGAGAATTTCATATTGTCA 59.183 33.333 0.00 0.00 34.68 3.58
5277 6913 8.655970 CGTACACTGAGAATTTCATATTGTCAA 58.344 33.333 0.00 0.00 34.68 3.18
5280 6916 9.850628 ACACTGAGAATTTCATATTGTCAAATG 57.149 29.630 0.00 0.00 34.68 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.867112 TCTACGCCATATTTAAGAGTTGTAAG 57.133 34.615 0.00 0.00 0.00 2.34
57 58 5.277828 GGCCAAGTTCTACGCCATATTTAAG 60.278 44.000 0.00 0.00 41.25 1.85
72 73 3.194005 TCCAATAGATCGGCCAAGTTC 57.806 47.619 2.24 0.00 0.00 3.01
83 84 7.002276 TGATCAGTTGATTGCATCCAATAGAT 58.998 34.615 13.36 13.36 41.60 1.98
85 86 6.628919 TGATCAGTTGATTGCATCCAATAG 57.371 37.500 0.00 2.23 41.60 1.73
135 136 8.558973 AATATGCTACCTTCATTCATAGCTTC 57.441 34.615 0.00 0.00 40.59 3.86
272 1593 4.973396 TCAGCGTTGATGATTTTGCTAAG 58.027 39.130 0.00 0.00 0.00 2.18
399 1720 1.768870 GAAGCCATAGTTCCCTAGGCA 59.231 52.381 2.05 0.00 38.70 4.75
443 1764 3.889044 GGAGACGAGGCGCATCGA 61.889 66.667 45.27 0.00 45.56 3.59
461 1782 1.346068 CTCCATAGCACTAAGGCCTCC 59.654 57.143 5.23 0.00 0.00 4.30
485 1806 3.470888 AAGGCCCGAGATCCACCG 61.471 66.667 0.00 0.00 0.00 4.94
603 1924 5.168569 CCTAGCAACGATTAGAAACACTGA 58.831 41.667 0.00 0.00 0.00 3.41
697 2018 2.496899 TGCAGGGAGACTTTCAATCC 57.503 50.000 0.00 0.00 0.00 3.01
709 2030 1.603455 CCGCCTCTTTTTGCAGGGA 60.603 57.895 0.00 0.00 0.00 4.20
791 2130 4.054780 TGACATTATACACCGCCTCTTC 57.945 45.455 0.00 0.00 0.00 2.87
833 2226 0.395586 TGGATCCGAAAGCCCAATGG 60.396 55.000 7.39 0.00 0.00 3.16
834 2227 1.473258 TTGGATCCGAAAGCCCAATG 58.527 50.000 7.39 0.00 34.10 2.82
906 2302 1.000646 GGTTCGGGGTTGGGCAATA 60.001 57.895 0.00 0.00 0.00 1.90
907 2303 2.283604 GGTTCGGGGTTGGGCAAT 60.284 61.111 0.00 0.00 0.00 3.56
912 2308 3.904617 TTGGGGGTTCGGGGTTGG 61.905 66.667 0.00 0.00 0.00 3.77
913 2309 2.599281 GTTGGGGGTTCGGGGTTG 60.599 66.667 0.00 0.00 0.00 3.77
914 2310 3.905873 GGTTGGGGGTTCGGGGTT 61.906 66.667 0.00 0.00 0.00 4.11
915 2311 4.932605 AGGTTGGGGGTTCGGGGT 62.933 66.667 0.00 0.00 0.00 4.95
916 2312 4.360405 CAGGTTGGGGGTTCGGGG 62.360 72.222 0.00 0.00 0.00 5.73
917 2313 4.360405 CCAGGTTGGGGGTTCGGG 62.360 72.222 0.00 0.00 32.67 5.14
920 2316 4.696805 GGGCCAGGTTGGGGGTTC 62.697 72.222 4.39 0.00 38.19 3.62
921 2317 3.840612 TAGGGCCAGGTTGGGGGTT 62.841 63.158 6.18 0.00 38.19 4.11
922 2318 3.613710 ATAGGGCCAGGTTGGGGGT 62.614 63.158 6.18 0.00 38.19 4.95
923 2319 2.699938 ATAGGGCCAGGTTGGGGG 60.700 66.667 6.18 0.00 38.19 5.40
924 2320 2.768022 GGATAGGGCCAGGTTGGGG 61.768 68.421 6.18 0.00 38.19 4.96
928 2324 0.853586 TTTGGGGATAGGGCCAGGTT 60.854 55.000 6.18 0.00 0.00 3.50
930 2326 0.113190 GATTTGGGGATAGGGCCAGG 59.887 60.000 6.18 0.00 0.00 4.45
937 2333 0.482887 GGTGGGGGATTTGGGGATAG 59.517 60.000 0.00 0.00 0.00 2.08
938 2334 1.002242 GGGTGGGGGATTTGGGGATA 61.002 60.000 0.00 0.00 0.00 2.59
944 2340 0.704076 TTCTCTGGGTGGGGGATTTG 59.296 55.000 0.00 0.00 0.00 2.32
947 2343 1.575447 GCTTTCTCTGGGTGGGGGAT 61.575 60.000 0.00 0.00 0.00 3.85
948 2344 2.231380 GCTTTCTCTGGGTGGGGGA 61.231 63.158 0.00 0.00 0.00 4.81
975 2407 2.924290 CGCTCTCCTTACGGAAGAAAAG 59.076 50.000 9.60 3.51 39.29 2.27
1120 2552 1.068610 CCTTTTCTTCATTTCGCCGCA 60.069 47.619 0.00 0.00 0.00 5.69
1197 2629 0.820226 CTTGGATGTCGCTCTCCTCA 59.180 55.000 0.00 0.00 32.47 3.86
1211 2643 2.935481 CCACTGCCCCCTCTTGGA 60.935 66.667 0.00 0.00 35.39 3.53
1213 2645 2.190488 GACTCCACTGCCCCCTCTTG 62.190 65.000 0.00 0.00 0.00 3.02
1241 2673 0.042708 CGCCAGATTCGATTTCGCTG 60.043 55.000 0.00 0.00 39.60 5.18
1399 2831 1.296715 GATCCTGGTTCCTGTGCGT 59.703 57.895 0.00 0.00 0.00 5.24
1553 2997 1.270678 GGTAGTCCTTGGCTTGTTCGT 60.271 52.381 0.00 0.00 0.00 3.85
1592 3036 2.273449 CGAAGGAGCCAGCCCAAT 59.727 61.111 0.00 0.00 0.00 3.16
1755 3202 1.078143 ACATCTTGCGGAGGCTTCC 60.078 57.895 4.40 4.40 40.82 3.46
1808 3264 1.199327 CTCTGTGATGGCTGCAACTTG 59.801 52.381 0.50 0.00 0.00 3.16
1843 3299 4.253685 CAACGATACCAAAGACATCCAGT 58.746 43.478 0.00 0.00 0.00 4.00
1998 3455 8.498054 AGTCATGTGAATACCAGAACAAATAG 57.502 34.615 0.00 0.00 0.00 1.73
2165 3628 5.305386 TCATCATATATCTCCCAATAGCCCG 59.695 44.000 0.00 0.00 0.00 6.13
2261 3749 2.952310 AGAGAAACCAAAAGCCACTGAC 59.048 45.455 0.00 0.00 0.00 3.51
2532 4021 3.084786 GCTGGTTTAGAATCACCAAGCT 58.915 45.455 0.00 0.00 42.68 3.74
2533 4022 2.164422 GGCTGGTTTAGAATCACCAAGC 59.836 50.000 0.00 0.00 42.68 4.01
2534 4023 3.420893 TGGCTGGTTTAGAATCACCAAG 58.579 45.455 0.00 0.00 42.68 3.61
2535 4024 3.517296 TGGCTGGTTTAGAATCACCAA 57.483 42.857 0.00 0.00 42.68 3.67
2610 4100 1.070275 GCCCTATAAACCGGACGGG 59.930 63.158 9.46 9.24 43.62 5.28
2663 4184 4.570369 CCAACCAAGGTGAAACAATCAAAC 59.430 41.667 0.00 0.00 40.50 2.93
2721 4242 2.563620 GGCAATAGCTACTACTCCCTCC 59.436 54.545 0.00 0.00 41.70 4.30
3056 4646 2.568090 GCACATTGTCAAGGGCCG 59.432 61.111 0.00 0.00 0.00 6.13
3098 4688 1.748493 CTGGAGGAGGAAAGAGACTCG 59.252 57.143 0.00 0.00 34.58 4.18
3288 4878 7.936584 TCCAAACGATTTAGAGACAAACAAAT 58.063 30.769 0.00 0.00 0.00 2.32
3906 5521 2.014857 CCACAGATTCAGCCATGTCAG 58.985 52.381 0.00 0.00 0.00 3.51
4151 5772 5.310409 TCTTCCTCAACAGTTTGATCCTT 57.690 39.130 0.00 0.00 41.05 3.36
4170 5791 5.012239 TGGCTGTGAATGCTTTAGAATCTT 58.988 37.500 0.00 0.00 0.00 2.40
4188 5809 3.333219 TGGAGGCTTCCCTGGCTG 61.333 66.667 13.07 0.00 43.12 4.85
4212 5833 1.890876 ACCAACTTCAAGCATACGCA 58.109 45.000 0.00 0.00 42.27 5.24
4229 5850 2.038557 TGACCTCCAGCTTACAAGAACC 59.961 50.000 0.00 0.00 0.00 3.62
4231 5852 2.038557 GGTGACCTCCAGCTTACAAGAA 59.961 50.000 0.00 0.00 40.01 2.52
4276 5897 4.019860 CCATTACATCCTCCCTAGACCATG 60.020 50.000 0.00 0.00 0.00 3.66
4306 5927 8.832521 CGGTAACAGCAATTATCCATTAACTAA 58.167 33.333 0.00 0.00 0.00 2.24
4308 5929 6.826741 ACGGTAACAGCAATTATCCATTAACT 59.173 34.615 0.00 0.00 0.00 2.24
4309 5930 6.910433 CACGGTAACAGCAATTATCCATTAAC 59.090 38.462 0.00 0.00 0.00 2.01
4311 5932 6.116806 ACACGGTAACAGCAATTATCCATTA 58.883 36.000 0.00 0.00 0.00 1.90
4312 5933 4.947388 ACACGGTAACAGCAATTATCCATT 59.053 37.500 0.00 0.00 0.00 3.16
4313 5934 4.523083 ACACGGTAACAGCAATTATCCAT 58.477 39.130 0.00 0.00 0.00 3.41
4315 5936 4.438200 CCAACACGGTAACAGCAATTATCC 60.438 45.833 0.00 0.00 0.00 2.59
4316 5937 4.658071 CCAACACGGTAACAGCAATTATC 58.342 43.478 0.00 0.00 0.00 1.75
4317 5938 4.695217 CCAACACGGTAACAGCAATTAT 57.305 40.909 0.00 0.00 0.00 1.28
4330 5951 0.528470 AACACAAACCACCAACACGG 59.472 50.000 0.00 0.00 42.50 4.94
4331 5952 2.355717 AAACACAAACCACCAACACG 57.644 45.000 0.00 0.00 0.00 4.49
4332 5953 5.172205 ACATTAAACACAAACCACCAACAC 58.828 37.500 0.00 0.00 0.00 3.32
4333 5954 5.407407 ACATTAAACACAAACCACCAACA 57.593 34.783 0.00 0.00 0.00 3.33
4334 5955 7.517575 GCATAACATTAAACACAAACCACCAAC 60.518 37.037 0.00 0.00 0.00 3.77
4335 5956 6.480320 GCATAACATTAAACACAAACCACCAA 59.520 34.615 0.00 0.00 0.00 3.67
4336 5957 5.986135 GCATAACATTAAACACAAACCACCA 59.014 36.000 0.00 0.00 0.00 4.17
4337 5958 5.986135 TGCATAACATTAAACACAAACCACC 59.014 36.000 0.00 0.00 0.00 4.61
4338 5959 6.699642 ACTGCATAACATTAAACACAAACCAC 59.300 34.615 0.00 0.00 0.00 4.16
4339 5960 6.699204 CACTGCATAACATTAAACACAAACCA 59.301 34.615 0.00 0.00 0.00 3.67
4340 5961 6.920758 TCACTGCATAACATTAAACACAAACC 59.079 34.615 0.00 0.00 0.00 3.27
4403 6024 5.652452 ACACTAATCAAACCAGGATAAAGGC 59.348 40.000 0.00 0.00 0.00 4.35
4449 6070 6.767902 GTCAAATCTATCTTAATCTGCCCACA 59.232 38.462 0.00 0.00 0.00 4.17
4536 6157 6.091169 GCCAACATTACATGGTCAAATCAAAG 59.909 38.462 0.00 0.00 39.00 2.77
4613 6237 6.934048 TTGTGCGTCAATTAATATGGATCA 57.066 33.333 0.00 0.00 0.00 2.92
4743 6377 4.937015 TCTCAATGCAAGAATCGTTGATCA 59.063 37.500 0.00 0.00 38.37 2.92
4921 6555 9.566432 AAAAATATCAATAAGAGAGGCGATTCT 57.434 29.630 0.00 0.00 0.00 2.40
4979 6615 5.808042 ACAAGTAGCATAGCATTGACAAG 57.192 39.130 0.00 0.00 0.00 3.16
4988 6624 5.862924 TCACTCAAAACAAGTAGCATAGC 57.137 39.130 0.00 0.00 0.00 2.97
5000 6636 9.736023 ATACAAGTTGATCTTTTCACTCAAAAC 57.264 29.630 10.54 0.00 32.84 2.43
5002 6638 9.734620 CAATACAAGTTGATCTTTTCACTCAAA 57.265 29.630 10.54 0.00 32.84 2.69
5003 6639 9.119418 TCAATACAAGTTGATCTTTTCACTCAA 57.881 29.630 10.54 0.00 33.41 3.02
5004 6640 8.675705 TCAATACAAGTTGATCTTTTCACTCA 57.324 30.769 10.54 0.00 33.41 3.41
5006 6642 9.903682 CAATCAATACAAGTTGATCTTTTCACT 57.096 29.630 10.54 0.00 45.49 3.41
5007 6643 9.132521 CCAATCAATACAAGTTGATCTTTTCAC 57.867 33.333 10.54 0.00 45.49 3.18
5008 6644 8.859090 ACCAATCAATACAAGTTGATCTTTTCA 58.141 29.630 10.54 0.00 45.49 2.69
5011 6647 9.739276 TCTACCAATCAATACAAGTTGATCTTT 57.261 29.630 10.54 0.00 45.49 2.52
5012 6648 9.739276 TTCTACCAATCAATACAAGTTGATCTT 57.261 29.630 10.54 0.00 45.49 2.40
5013 6649 9.739276 TTTCTACCAATCAATACAAGTTGATCT 57.261 29.630 10.54 0.00 45.49 2.75
5014 6650 9.994432 CTTTCTACCAATCAATACAAGTTGATC 57.006 33.333 10.54 0.00 45.49 2.92
5016 6652 9.219603 CTCTTTCTACCAATCAATACAAGTTGA 57.780 33.333 10.54 0.00 41.88 3.18
5017 6653 9.003658 ACTCTTTCTACCAATCAATACAAGTTG 57.996 33.333 0.00 0.00 0.00 3.16
5019 6655 9.654663 GTACTCTTTCTACCAATCAATACAAGT 57.345 33.333 0.00 0.00 0.00 3.16
5020 6656 9.653287 TGTACTCTTTCTACCAATCAATACAAG 57.347 33.333 0.00 0.00 0.00 3.16
5044 6680 9.784531 CACCTCTTCCAGTCATATATAAATTGT 57.215 33.333 0.00 0.00 0.00 2.71
5045 6681 8.725148 GCACCTCTTCCAGTCATATATAAATTG 58.275 37.037 0.00 0.00 0.00 2.32
5046 6682 7.604164 CGCACCTCTTCCAGTCATATATAAATT 59.396 37.037 0.00 0.00 0.00 1.82
5047 6683 7.099764 CGCACCTCTTCCAGTCATATATAAAT 58.900 38.462 0.00 0.00 0.00 1.40
5048 6684 6.041637 ACGCACCTCTTCCAGTCATATATAAA 59.958 38.462 0.00 0.00 0.00 1.40
5049 6685 5.538813 ACGCACCTCTTCCAGTCATATATAA 59.461 40.000 0.00 0.00 0.00 0.98
5050 6686 5.077564 ACGCACCTCTTCCAGTCATATATA 58.922 41.667 0.00 0.00 0.00 0.86
5051 6687 3.898123 ACGCACCTCTTCCAGTCATATAT 59.102 43.478 0.00 0.00 0.00 0.86
5052 6688 3.296854 ACGCACCTCTTCCAGTCATATA 58.703 45.455 0.00 0.00 0.00 0.86
5053 6689 2.101582 GACGCACCTCTTCCAGTCATAT 59.898 50.000 0.00 0.00 0.00 1.78
5054 6690 1.476891 GACGCACCTCTTCCAGTCATA 59.523 52.381 0.00 0.00 0.00 2.15
5055 6691 0.247736 GACGCACCTCTTCCAGTCAT 59.752 55.000 0.00 0.00 0.00 3.06
5056 6692 1.666011 GACGCACCTCTTCCAGTCA 59.334 57.895 0.00 0.00 0.00 3.41
5057 6693 1.444553 CGACGCACCTCTTCCAGTC 60.445 63.158 0.00 0.00 0.00 3.51
5058 6694 1.461091 TTCGACGCACCTCTTCCAGT 61.461 55.000 0.00 0.00 0.00 4.00
5059 6695 1.009389 GTTCGACGCACCTCTTCCAG 61.009 60.000 0.00 0.00 0.00 3.86
5060 6696 1.006571 GTTCGACGCACCTCTTCCA 60.007 57.895 0.00 0.00 0.00 3.53
5061 6697 1.006571 TGTTCGACGCACCTCTTCC 60.007 57.895 0.00 0.00 0.00 3.46
5062 6698 0.039437 TCTGTTCGACGCACCTCTTC 60.039 55.000 0.00 0.00 0.00 2.87
5063 6699 0.318784 GTCTGTTCGACGCACCTCTT 60.319 55.000 0.00 0.00 32.04 2.85
5064 6700 1.286260 GTCTGTTCGACGCACCTCT 59.714 57.895 0.00 0.00 32.04 3.69
5065 6701 3.843985 GTCTGTTCGACGCACCTC 58.156 61.111 0.00 0.00 32.04 3.85
5072 6708 2.338813 CGAATCGTCAAGTCTGTTCGAC 59.661 50.000 0.00 0.00 40.39 4.20
5073 6709 2.224784 TCGAATCGTCAAGTCTGTTCGA 59.775 45.455 1.52 4.17 43.24 3.71
5074 6710 2.581637 TCGAATCGTCAAGTCTGTTCG 58.418 47.619 1.52 0.00 39.60 3.95
5075 6711 3.734231 TGTTCGAATCGTCAAGTCTGTTC 59.266 43.478 0.00 0.00 0.00 3.18
5076 6712 3.713288 TGTTCGAATCGTCAAGTCTGTT 58.287 40.909 0.00 0.00 0.00 3.16
5077 6713 3.243434 ACTGTTCGAATCGTCAAGTCTGT 60.243 43.478 0.00 0.00 0.00 3.41
5078 6714 3.309388 ACTGTTCGAATCGTCAAGTCTG 58.691 45.455 0.00 0.00 0.00 3.51
5079 6715 3.004419 TGACTGTTCGAATCGTCAAGTCT 59.996 43.478 22.27 2.01 33.84 3.24
5080 6716 3.305964 TGACTGTTCGAATCGTCAAGTC 58.694 45.455 22.27 19.30 33.84 3.01
5081 6717 3.364889 TGACTGTTCGAATCGTCAAGT 57.635 42.857 22.27 11.26 33.84 3.16
5082 6718 4.265556 GGTATGACTGTTCGAATCGTCAAG 59.734 45.833 25.83 11.05 39.52 3.02
5083 6719 4.171005 GGTATGACTGTTCGAATCGTCAA 58.829 43.478 25.83 16.74 39.52 3.18
5084 6720 3.428452 GGGTATGACTGTTCGAATCGTCA 60.428 47.826 24.90 24.90 40.27 4.35
5085 6721 3.114065 GGGTATGACTGTTCGAATCGTC 58.886 50.000 17.71 17.71 0.00 4.20
5086 6722 2.758979 AGGGTATGACTGTTCGAATCGT 59.241 45.455 0.00 1.04 0.00 3.73
5087 6723 3.438297 AGGGTATGACTGTTCGAATCG 57.562 47.619 0.00 0.00 0.00 3.34
5088 6724 5.903810 ACTTAGGGTATGACTGTTCGAATC 58.096 41.667 0.00 0.00 0.00 2.52
5089 6725 5.450137 CGACTTAGGGTATGACTGTTCGAAT 60.450 44.000 0.00 0.00 0.00 3.34
5090 6726 4.142534 CGACTTAGGGTATGACTGTTCGAA 60.143 45.833 0.00 0.00 0.00 3.71
5091 6727 3.376234 CGACTTAGGGTATGACTGTTCGA 59.624 47.826 0.00 0.00 0.00 3.71
5092 6728 3.488721 CCGACTTAGGGTATGACTGTTCG 60.489 52.174 0.00 0.00 0.00 3.95
5093 6729 3.446516 ACCGACTTAGGGTATGACTGTTC 59.553 47.826 0.00 0.00 35.58 3.18
5094 6730 3.438183 ACCGACTTAGGGTATGACTGTT 58.562 45.455 0.00 0.00 35.58 3.16
5095 6731 3.097342 ACCGACTTAGGGTATGACTGT 57.903 47.619 0.00 0.00 35.58 3.55
5096 6732 3.782046 CAACCGACTTAGGGTATGACTG 58.218 50.000 0.00 0.00 36.57 3.51
5097 6733 2.167900 GCAACCGACTTAGGGTATGACT 59.832 50.000 0.00 0.00 36.57 3.41
5098 6734 2.167900 AGCAACCGACTTAGGGTATGAC 59.832 50.000 0.00 0.00 36.57 3.06
5099 6735 2.463752 AGCAACCGACTTAGGGTATGA 58.536 47.619 0.00 0.00 36.57 2.15
5100 6736 2.981859 AGCAACCGACTTAGGGTATG 57.018 50.000 0.00 0.00 36.57 2.39
5101 6737 5.625568 AATTAGCAACCGACTTAGGGTAT 57.374 39.130 0.00 0.00 36.57 2.73
5102 6738 5.421693 TGTAATTAGCAACCGACTTAGGGTA 59.578 40.000 0.00 0.00 36.57 3.69
5103 6739 3.994931 AATTAGCAACCGACTTAGGGT 57.005 42.857 0.00 0.00 40.20 4.34
5104 6740 4.761975 TGTAATTAGCAACCGACTTAGGG 58.238 43.478 0.00 0.00 35.02 3.53
5105 6741 4.809426 CCTGTAATTAGCAACCGACTTAGG 59.191 45.833 0.00 0.00 37.30 2.69
5106 6742 4.809426 CCCTGTAATTAGCAACCGACTTAG 59.191 45.833 0.00 0.00 0.00 2.18
5107 6743 4.467082 TCCCTGTAATTAGCAACCGACTTA 59.533 41.667 0.00 0.00 0.00 2.24
5108 6744 3.262405 TCCCTGTAATTAGCAACCGACTT 59.738 43.478 0.00 0.00 0.00 3.01
5109 6745 2.835764 TCCCTGTAATTAGCAACCGACT 59.164 45.455 0.00 0.00 0.00 4.18
5110 6746 3.255969 TCCCTGTAATTAGCAACCGAC 57.744 47.619 0.00 0.00 0.00 4.79
5111 6747 3.804036 CATCCCTGTAATTAGCAACCGA 58.196 45.455 0.00 0.00 0.00 4.69
5112 6748 2.290641 GCATCCCTGTAATTAGCAACCG 59.709 50.000 0.00 0.00 0.00 4.44
5113 6749 3.287222 TGCATCCCTGTAATTAGCAACC 58.713 45.455 0.00 0.00 0.00 3.77
5114 6750 4.981806 TTGCATCCCTGTAATTAGCAAC 57.018 40.909 0.00 0.00 35.81 4.17
5115 6751 4.339748 TGTTGCATCCCTGTAATTAGCAA 58.660 39.130 0.00 0.00 38.07 3.91
5116 6752 3.947196 CTGTTGCATCCCTGTAATTAGCA 59.053 43.478 0.00 0.00 29.41 3.49
5117 6753 3.947834 ACTGTTGCATCCCTGTAATTAGC 59.052 43.478 0.00 0.00 29.41 3.09
5118 6754 6.515272 AAACTGTTGCATCCCTGTAATTAG 57.485 37.500 0.00 0.00 29.41 1.73
5119 6755 8.410673 TTTAAACTGTTGCATCCCTGTAATTA 57.589 30.769 0.00 0.00 29.41 1.40
5120 6756 6.909550 TTAAACTGTTGCATCCCTGTAATT 57.090 33.333 0.00 0.00 29.41 1.40
5121 6757 6.909550 TTTAAACTGTTGCATCCCTGTAAT 57.090 33.333 0.00 0.00 29.41 1.89
5122 6758 6.547880 TCTTTTAAACTGTTGCATCCCTGTAA 59.452 34.615 0.00 0.00 0.00 2.41
5123 6759 6.065374 TCTTTTAAACTGTTGCATCCCTGTA 58.935 36.000 0.00 0.00 0.00 2.74
5124 6760 4.892934 TCTTTTAAACTGTTGCATCCCTGT 59.107 37.500 0.00 0.00 0.00 4.00
5125 6761 5.241506 TCTCTTTTAAACTGTTGCATCCCTG 59.758 40.000 0.00 0.00 0.00 4.45
5126 6762 5.241728 GTCTCTTTTAAACTGTTGCATCCCT 59.758 40.000 0.00 0.00 0.00 4.20
5127 6763 5.009610 TGTCTCTTTTAAACTGTTGCATCCC 59.990 40.000 0.00 0.00 0.00 3.85
5128 6764 5.915196 GTGTCTCTTTTAAACTGTTGCATCC 59.085 40.000 0.00 0.00 0.00 3.51
5129 6765 5.621228 CGTGTCTCTTTTAAACTGTTGCATC 59.379 40.000 0.00 0.00 0.00 3.91
5130 6766 5.065988 ACGTGTCTCTTTTAAACTGTTGCAT 59.934 36.000 0.00 0.00 0.00 3.96
5131 6767 4.393680 ACGTGTCTCTTTTAAACTGTTGCA 59.606 37.500 0.00 0.00 0.00 4.08
5132 6768 4.905269 ACGTGTCTCTTTTAAACTGTTGC 58.095 39.130 0.00 0.00 0.00 4.17
5133 6769 5.499047 GGACGTGTCTCTTTTAAACTGTTG 58.501 41.667 0.00 0.00 0.00 3.33
5134 6770 4.573607 GGGACGTGTCTCTTTTAAACTGTT 59.426 41.667 0.00 0.00 0.00 3.16
5135 6771 4.124970 GGGACGTGTCTCTTTTAAACTGT 58.875 43.478 0.00 0.00 0.00 3.55
5136 6772 4.377897 AGGGACGTGTCTCTTTTAAACTG 58.622 43.478 0.00 0.00 37.00 3.16
5137 6773 4.684484 AGGGACGTGTCTCTTTTAAACT 57.316 40.909 0.00 0.00 37.00 2.66
5145 6781 1.478510 CATAGCAAGGGACGTGTCTCT 59.521 52.381 0.00 0.00 43.54 3.10
5146 6782 1.927895 CATAGCAAGGGACGTGTCTC 58.072 55.000 0.00 0.00 40.70 3.36
5147 6783 0.108138 GCATAGCAAGGGACGTGTCT 60.108 55.000 0.00 0.00 40.70 3.41
5148 6784 0.391130 TGCATAGCAAGGGACGTGTC 60.391 55.000 0.00 0.00 40.70 3.67
5149 6785 0.036164 TTGCATAGCAAGGGACGTGT 59.964 50.000 0.00 0.00 43.99 4.49
5150 6786 2.853159 TTGCATAGCAAGGGACGTG 58.147 52.632 0.00 0.00 43.99 4.49
5165 6801 0.040425 CCTAAACACTGTGCGGTTGC 60.040 55.000 7.90 0.00 43.20 4.17
5166 6802 0.040425 GCCTAAACACTGTGCGGTTG 60.040 55.000 7.90 0.00 0.00 3.77
5167 6803 0.464735 TGCCTAAACACTGTGCGGTT 60.465 50.000 7.90 2.62 0.00 4.44
5168 6804 0.464735 TTGCCTAAACACTGTGCGGT 60.465 50.000 7.90 0.00 0.00 5.68
5169 6805 0.665835 TTTGCCTAAACACTGTGCGG 59.334 50.000 7.90 4.81 0.00 5.69
5170 6806 2.223479 ACTTTTGCCTAAACACTGTGCG 60.223 45.455 7.90 0.00 0.00 5.34
5171 6807 3.436700 ACTTTTGCCTAAACACTGTGC 57.563 42.857 7.90 0.00 0.00 4.57
5172 6808 6.560253 ATCTACTTTTGCCTAAACACTGTG 57.440 37.500 6.19 6.19 0.00 3.66
5173 6809 6.206829 GGAATCTACTTTTGCCTAAACACTGT 59.793 38.462 0.00 0.00 0.00 3.55
5174 6810 6.431234 AGGAATCTACTTTTGCCTAAACACTG 59.569 38.462 0.00 0.00 0.00 3.66
5175 6811 6.543735 AGGAATCTACTTTTGCCTAAACACT 58.456 36.000 0.00 0.00 0.00 3.55
5176 6812 6.819397 AGGAATCTACTTTTGCCTAAACAC 57.181 37.500 0.00 0.00 0.00 3.32
5177 6813 9.528489 AATAAGGAATCTACTTTTGCCTAAACA 57.472 29.630 0.00 0.00 0.00 2.83
5224 6860 9.942850 TCATGATGAATGAAAGTAGTGTTAGAA 57.057 29.630 0.00 0.00 42.49 2.10
5225 6861 9.371136 GTCATGATGAATGAAAGTAGTGTTAGA 57.629 33.333 0.00 0.00 46.90 2.10
5226 6862 8.323854 CGTCATGATGAATGAAAGTAGTGTTAG 58.676 37.037 9.46 0.00 46.90 2.34
5227 6863 7.817478 ACGTCATGATGAATGAAAGTAGTGTTA 59.183 33.333 21.75 0.00 46.90 2.41
5228 6864 6.650807 ACGTCATGATGAATGAAAGTAGTGTT 59.349 34.615 21.75 0.00 46.90 3.32
5229 6865 6.166279 ACGTCATGATGAATGAAAGTAGTGT 58.834 36.000 21.75 0.00 46.90 3.55
5230 6866 6.653273 ACGTCATGATGAATGAAAGTAGTG 57.347 37.500 21.75 0.00 46.90 2.74
5231 6867 7.275779 GTGTACGTCATGATGAATGAAAGTAGT 59.724 37.037 21.75 0.00 46.90 2.73
5232 6868 7.489435 AGTGTACGTCATGATGAATGAAAGTAG 59.511 37.037 21.75 0.00 46.90 2.57
5233 6869 7.275560 CAGTGTACGTCATGATGAATGAAAGTA 59.724 37.037 21.75 0.00 46.90 2.24
5234 6870 6.091305 CAGTGTACGTCATGATGAATGAAAGT 59.909 38.462 21.75 0.00 46.90 2.66
5235 6871 6.311200 TCAGTGTACGTCATGATGAATGAAAG 59.689 38.462 21.75 5.89 46.90 2.62
5236 6872 6.162777 TCAGTGTACGTCATGATGAATGAAA 58.837 36.000 21.75 0.00 46.90 2.69
5237 6873 5.719173 TCAGTGTACGTCATGATGAATGAA 58.281 37.500 21.75 0.00 46.90 2.57
5238 6874 5.125417 TCTCAGTGTACGTCATGATGAATGA 59.875 40.000 21.75 12.44 43.24 2.57
5239 6875 5.343249 TCTCAGTGTACGTCATGATGAATG 58.657 41.667 21.75 8.83 37.66 2.67
5240 6876 5.582689 TCTCAGTGTACGTCATGATGAAT 57.417 39.130 21.75 2.56 0.00 2.57
5241 6877 5.385509 TTCTCAGTGTACGTCATGATGAA 57.614 39.130 21.75 3.97 0.00 2.57
5242 6878 5.582689 ATTCTCAGTGTACGTCATGATGA 57.417 39.130 21.75 7.30 0.00 2.92
5243 6879 6.311200 TGAAATTCTCAGTGTACGTCATGATG 59.689 38.462 13.53 13.53 0.00 3.07
5244 6880 6.398095 TGAAATTCTCAGTGTACGTCATGAT 58.602 36.000 0.00 0.00 0.00 2.45
5245 6881 5.778862 TGAAATTCTCAGTGTACGTCATGA 58.221 37.500 0.00 0.00 0.00 3.07
5246 6882 6.653273 ATGAAATTCTCAGTGTACGTCATG 57.347 37.500 0.00 0.00 37.52 3.07
5247 6883 8.820933 CAATATGAAATTCTCAGTGTACGTCAT 58.179 33.333 0.00 0.00 37.52 3.06
5248 6884 7.817478 ACAATATGAAATTCTCAGTGTACGTCA 59.183 33.333 0.00 0.00 37.52 4.35
5249 6885 8.186178 ACAATATGAAATTCTCAGTGTACGTC 57.814 34.615 0.00 0.00 37.52 4.34
5250 6886 7.817478 TGACAATATGAAATTCTCAGTGTACGT 59.183 33.333 0.00 0.00 37.52 3.57
5251 6887 8.185003 TGACAATATGAAATTCTCAGTGTACG 57.815 34.615 0.00 0.00 37.52 3.67
5254 6890 9.850628 CATTTGACAATATGAAATTCTCAGTGT 57.149 29.630 0.00 0.00 37.52 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.