Multiple sequence alignment - TraesCS1D01G048800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G048800 chr1D 100.000 3544 0 0 1 3544 28563844 28567387 0.000000e+00 6545.0
1 TraesCS1D01G048800 chr1D 79.592 98 17 3 1040 1135 54927250 54927154 2.280000e-07 67.6
2 TraesCS1D01G048800 chr1A 88.964 3570 217 87 90 3544 29786528 29790035 0.000000e+00 4246.0
3 TraesCS1D01G048800 chr1A 79.592 98 17 3 1040 1135 53997318 53997222 2.280000e-07 67.6
4 TraesCS1D01G048800 chr1B 90.720 2360 139 32 355 2676 47172389 47174706 0.000000e+00 3072.0
5 TraesCS1D01G048800 chr1B 86.364 704 38 13 2766 3415 47174762 47175461 0.000000e+00 715.0
6 TraesCS1D01G048800 chr1B 92.446 278 16 4 261 537 47166895 47167168 3.320000e-105 392.0
7 TraesCS1D01G048800 chr1B 90.566 159 9 2 104 256 47172233 47172391 4.640000e-49 206.0
8 TraesCS1D01G048800 chr6D 84.752 282 38 4 3263 3544 470858580 470858304 9.690000e-71 278.0
9 TraesCS1D01G048800 chr6D 95.238 42 2 0 51 92 11703973 11703932 2.280000e-07 67.6
10 TraesCS1D01G048800 chr6A 83.688 282 35 7 3263 3544 615674756 615674486 4.540000e-64 255.0
11 TraesCS1D01G048800 chr4B 86.996 223 24 4 3261 3482 24551967 24552185 2.730000e-61 246.0
12 TraesCS1D01G048800 chr5B 74.228 648 133 29 1738 2374 576055149 576055773 1.270000e-59 241.0
13 TraesCS1D01G048800 chr5B 74.322 553 108 28 1738 2279 576226130 576226659 1.670000e-48 204.0
14 TraesCS1D01G048800 chr5B 82.949 217 35 2 2103 2318 576260921 576261136 1.000000e-45 195.0
15 TraesCS1D01G048800 chr5B 95.556 45 1 1 1092 1135 611868621 611868665 1.770000e-08 71.3
16 TraesCS1D01G048800 chr6B 82.745 255 39 4 3264 3517 719936030 719936280 4.600000e-54 222.0
17 TraesCS1D01G048800 chr5A 74.727 550 113 20 1738 2280 589329025 589329555 4.600000e-54 222.0
18 TraesCS1D01G048800 chr5A 87.671 146 16 2 2103 2247 590527395 590527539 6.080000e-38 169.0
19 TraesCS1D01G048800 chr5A 81.726 197 34 2 2103 2298 589585149 589585344 2.830000e-36 163.0
20 TraesCS1D01G048800 chr5A 95.556 45 1 1 1092 1135 619359906 619359950 1.770000e-08 71.3
21 TraesCS1D01G048800 chr5D 78.723 235 42 7 2096 2326 469465171 469465401 2.200000e-32 150.0
22 TraesCS1D01G048800 chr5D 95.556 45 1 1 1092 1135 495290612 495290656 1.770000e-08 71.3
23 TraesCS1D01G048800 chr2D 78.400 125 24 3 1013 1135 337923093 337923216 1.050000e-10 78.7
24 TraesCS1D01G048800 chr2B 78.400 125 24 3 1013 1135 405262351 405262474 1.050000e-10 78.7
25 TraesCS1D01G048800 chr2B 97.561 41 1 0 52 92 58991824 58991784 1.770000e-08 71.3
26 TraesCS1D01G048800 chr7D 97.727 44 1 0 51 94 377606796 377606839 3.790000e-10 76.8
27 TraesCS1D01G048800 chr4A 95.238 42 2 0 51 92 100613837 100613878 2.280000e-07 67.6
28 TraesCS1D01G048800 chr2A 95.238 42 2 0 52 93 685928351 685928392 2.280000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G048800 chr1D 28563844 28567387 3543 False 6545 6545 100.000000 1 3544 1 chr1D.!!$F1 3543
1 TraesCS1D01G048800 chr1A 29786528 29790035 3507 False 4246 4246 88.964000 90 3544 1 chr1A.!!$F1 3454
2 TraesCS1D01G048800 chr1B 47172233 47175461 3228 False 1331 3072 89.216667 104 3415 3 chr1B.!!$F2 3311
3 TraesCS1D01G048800 chr5B 576055149 576055773 624 False 241 241 74.228000 1738 2374 1 chr5B.!!$F1 636
4 TraesCS1D01G048800 chr5B 576226130 576226659 529 False 204 204 74.322000 1738 2279 1 chr5B.!!$F2 541
5 TraesCS1D01G048800 chr5A 589329025 589329555 530 False 222 222 74.727000 1738 2280 1 chr5A.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.034059 AGCAGAAGAACCGTGGTCTG 59.966 55.0 0.00 0.0 40.4 3.51 F
761 788 0.034186 CAGAATGCCAGGCCCTAACA 60.034 55.0 9.64 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1633 1.073763 TGTAGACCCTGCATGCAAAGT 59.926 47.619 22.88 20.84 0.0 2.66 R
2655 2736 1.132643 CCTCCGTCCAGAAGTTACTCG 59.867 57.143 0.00 0.00 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.971032 AACTTTCAAGCAGAAGAACCG 57.029 42.857 0.00 0.00 37.57 4.44
23 24 2.919228 ACTTTCAAGCAGAAGAACCGT 58.081 42.857 0.00 0.00 37.57 4.83
24 25 2.614057 ACTTTCAAGCAGAAGAACCGTG 59.386 45.455 0.00 0.00 37.57 4.94
25 26 1.593196 TTCAAGCAGAAGAACCGTGG 58.407 50.000 0.00 0.00 0.00 4.94
26 27 0.468226 TCAAGCAGAAGAACCGTGGT 59.532 50.000 0.00 0.00 0.00 4.16
27 28 0.868406 CAAGCAGAAGAACCGTGGTC 59.132 55.000 0.00 0.00 0.00 4.02
28 29 0.759346 AAGCAGAAGAACCGTGGTCT 59.241 50.000 0.00 0.00 0.00 3.85
29 30 0.034059 AGCAGAAGAACCGTGGTCTG 59.966 55.000 0.00 0.00 40.40 3.51
30 31 2.533318 CAGAAGAACCGTGGTCTGC 58.467 57.895 0.00 0.00 31.80 4.26
31 32 0.034059 CAGAAGAACCGTGGTCTGCT 59.966 55.000 0.00 0.00 31.80 4.24
32 33 0.759346 AGAAGAACCGTGGTCTGCTT 59.241 50.000 0.00 0.00 0.00 3.91
33 34 1.141053 AGAAGAACCGTGGTCTGCTTT 59.859 47.619 0.00 0.00 0.00 3.51
34 35 2.367567 AGAAGAACCGTGGTCTGCTTTA 59.632 45.455 0.00 0.00 0.00 1.85
35 36 2.165319 AGAACCGTGGTCTGCTTTAC 57.835 50.000 0.00 0.00 0.00 2.01
36 37 1.414919 AGAACCGTGGTCTGCTTTACA 59.585 47.619 0.00 0.00 0.00 2.41
37 38 2.158871 AGAACCGTGGTCTGCTTTACAA 60.159 45.455 0.00 0.00 0.00 2.41
38 39 1.878953 ACCGTGGTCTGCTTTACAAG 58.121 50.000 0.00 0.00 0.00 3.16
39 40 1.414919 ACCGTGGTCTGCTTTACAAGA 59.585 47.619 0.00 0.00 0.00 3.02
40 41 2.158871 ACCGTGGTCTGCTTTACAAGAA 60.159 45.455 0.00 0.00 0.00 2.52
41 42 3.074412 CCGTGGTCTGCTTTACAAGAAT 58.926 45.455 0.00 0.00 0.00 2.40
42 43 3.120199 CCGTGGTCTGCTTTACAAGAATG 60.120 47.826 0.00 0.00 0.00 2.67
43 44 3.498397 CGTGGTCTGCTTTACAAGAATGT 59.502 43.478 0.00 0.00 43.74 2.71
44 45 4.024048 CGTGGTCTGCTTTACAAGAATGTT 60.024 41.667 0.00 0.00 41.05 2.71
45 46 5.505654 CGTGGTCTGCTTTACAAGAATGTTT 60.506 40.000 0.00 0.00 41.05 2.83
46 47 6.273071 GTGGTCTGCTTTACAAGAATGTTTT 58.727 36.000 0.00 0.00 41.05 2.43
47 48 7.422399 GTGGTCTGCTTTACAAGAATGTTTTA 58.578 34.615 0.00 0.00 41.05 1.52
48 49 8.082242 GTGGTCTGCTTTACAAGAATGTTTTAT 58.918 33.333 0.00 0.00 41.05 1.40
49 50 9.290988 TGGTCTGCTTTACAAGAATGTTTTATA 57.709 29.630 0.00 0.00 41.05 0.98
62 63 9.905713 AAGAATGTTTTATATTCAGCTACTCCA 57.094 29.630 0.00 0.00 37.08 3.86
63 64 9.553064 AGAATGTTTTATATTCAGCTACTCCAG 57.447 33.333 0.00 0.00 37.08 3.86
77 78 4.559251 GCTACTCCAGCGACATATATTTCG 59.441 45.833 15.36 15.36 41.37 3.46
78 79 3.914312 ACTCCAGCGACATATATTTCGG 58.086 45.455 19.81 7.82 35.73 4.30
79 80 3.321111 ACTCCAGCGACATATATTTCGGT 59.679 43.478 17.71 17.71 46.29 4.69
80 81 4.521639 ACTCCAGCGACATATATTTCGGTA 59.478 41.667 21.60 9.80 43.70 4.02
81 82 5.055642 TCCAGCGACATATATTTCGGTAG 57.944 43.478 21.60 16.28 43.70 3.18
82 83 4.763279 TCCAGCGACATATATTTCGGTAGA 59.237 41.667 21.60 18.00 43.70 2.59
83 84 5.096169 CCAGCGACATATATTTCGGTAGAG 58.904 45.833 21.60 12.09 43.70 2.43
84 85 5.106277 CCAGCGACATATATTTCGGTAGAGA 60.106 44.000 21.60 0.00 43.70 3.10
85 86 6.024664 CAGCGACATATATTTCGGTAGAGAG 58.975 44.000 21.60 8.85 43.70 3.20
86 87 5.124138 AGCGACATATATTTCGGTAGAGAGG 59.876 44.000 20.93 0.00 43.71 3.69
87 88 5.676584 GCGACATATATTTCGGTAGAGAGGG 60.677 48.000 19.81 0.00 35.73 4.30
88 89 5.646793 CGACATATATTTCGGTAGAGAGGGA 59.353 44.000 12.48 0.00 0.00 4.20
89 90 6.183360 CGACATATATTTCGGTAGAGAGGGAG 60.183 46.154 12.48 0.00 0.00 4.30
90 91 6.553857 ACATATATTTCGGTAGAGAGGGAGT 58.446 40.000 0.00 0.00 0.00 3.85
91 92 7.696981 ACATATATTTCGGTAGAGAGGGAGTA 58.303 38.462 0.00 0.00 0.00 2.59
92 93 8.337739 ACATATATTTCGGTAGAGAGGGAGTAT 58.662 37.037 0.00 0.00 0.00 2.12
93 94 9.191479 CATATATTTCGGTAGAGAGGGAGTATT 57.809 37.037 0.00 0.00 0.00 1.89
94 95 9.771140 ATATATTTCGGTAGAGAGGGAGTATTT 57.229 33.333 0.00 0.00 0.00 1.40
95 96 5.593679 TTTCGGTAGAGAGGGAGTATTTG 57.406 43.478 0.00 0.00 0.00 2.32
102 103 7.014422 CGGTAGAGAGGGAGTATTTGTTATCTT 59.986 40.741 0.00 0.00 0.00 2.40
110 111 8.482128 AGGGAGTATTTGTTATCTTCTTGAGAG 58.518 37.037 0.00 0.00 37.93 3.20
130 131 8.579682 TGAGAGAATAAATCATGATACACGTG 57.420 34.615 15.48 15.48 36.90 4.49
212 219 0.603569 AGTCGAATGTTCCGAGCTGT 59.396 50.000 0.00 0.00 36.66 4.40
273 280 3.046087 CCAGACAGCACGCACCAG 61.046 66.667 0.00 0.00 0.00 4.00
317 324 1.955778 TGTCGTCGGAGTTCAACCTAA 59.044 47.619 0.00 0.00 0.00 2.69
318 325 2.287788 TGTCGTCGGAGTTCAACCTAAC 60.288 50.000 0.00 0.00 0.00 2.34
319 326 2.030451 GTCGTCGGAGTTCAACCTAACT 60.030 50.000 0.00 0.00 42.36 2.24
321 328 2.729882 CGTCGGAGTTCAACCTAACTTG 59.270 50.000 0.00 0.00 39.78 3.16
322 329 2.479275 GTCGGAGTTCAACCTAACTTGC 59.521 50.000 0.00 0.00 39.78 4.01
324 331 2.490991 GGAGTTCAACCTAACTTGCGT 58.509 47.619 0.00 0.00 39.78 5.24
328 337 0.107831 TCAACCTAACTTGCGTGGCT 59.892 50.000 0.00 0.00 0.00 4.75
575 595 2.698855 ATGCAGCAAACTATCCTCGT 57.301 45.000 0.00 0.00 0.00 4.18
576 596 1.725641 TGCAGCAAACTATCCTCGTG 58.274 50.000 0.00 0.00 0.00 4.35
577 597 1.275010 TGCAGCAAACTATCCTCGTGA 59.725 47.619 0.00 0.00 0.00 4.35
690 717 2.432628 GCCTCGACGGTCACAAGG 60.433 66.667 9.10 11.97 34.25 3.61
761 788 0.034186 CAGAATGCCAGGCCCTAACA 60.034 55.000 9.64 0.00 0.00 2.41
763 790 1.106285 GAATGCCAGGCCCTAACAAG 58.894 55.000 9.64 0.00 0.00 3.16
787 841 1.242076 CCCAACAAGAACCAGCTCAG 58.758 55.000 0.00 0.00 0.00 3.35
793 847 4.639135 ACAAGAACCAGCTCAGTTTTTC 57.361 40.909 0.38 0.00 0.00 2.29
836 890 0.449388 CCGCTGGAGCAACAAGAATC 59.551 55.000 0.00 0.00 42.21 2.52
839 893 2.163010 CGCTGGAGCAACAAGAATCATT 59.837 45.455 0.00 0.00 42.21 2.57
846 900 5.163673 GGAGCAACAAGAATCATTCCTTCTC 60.164 44.000 0.00 0.00 31.83 2.87
847 901 5.568392 AGCAACAAGAATCATTCCTTCTCT 58.432 37.500 0.00 0.00 31.83 3.10
867 921 3.414700 GGCTCTTGGTGCGTGTCG 61.415 66.667 0.00 0.00 0.00 4.35
868 922 2.661866 GCTCTTGGTGCGTGTCGT 60.662 61.111 0.00 0.00 0.00 4.34
869 923 2.244651 GCTCTTGGTGCGTGTCGTT 61.245 57.895 0.00 0.00 0.00 3.85
870 924 1.853319 CTCTTGGTGCGTGTCGTTC 59.147 57.895 0.00 0.00 0.00 3.95
871 925 0.874175 CTCTTGGTGCGTGTCGTTCA 60.874 55.000 0.00 0.00 0.00 3.18
872 926 0.249699 TCTTGGTGCGTGTCGTTCAT 60.250 50.000 0.00 0.00 0.00 2.57
873 927 0.586319 CTTGGTGCGTGTCGTTCATT 59.414 50.000 0.00 0.00 0.00 2.57
874 928 0.584396 TTGGTGCGTGTCGTTCATTC 59.416 50.000 0.00 0.00 0.00 2.67
876 930 0.163788 GGTGCGTGTCGTTCATTCTG 59.836 55.000 0.00 0.00 0.00 3.02
878 932 0.878086 TGCGTGTCGTTCATTCTGCA 60.878 50.000 0.00 0.00 0.00 4.41
879 933 0.179240 GCGTGTCGTTCATTCTGCAG 60.179 55.000 7.63 7.63 0.00 4.41
880 934 0.179240 CGTGTCGTTCATTCTGCAGC 60.179 55.000 9.47 0.00 0.00 5.25
881 935 0.867746 GTGTCGTTCATTCTGCAGCA 59.132 50.000 9.47 0.00 0.00 4.41
904 958 6.450545 CATCTCTCACTATAAATTCTGCCGA 58.549 40.000 0.00 0.00 0.00 5.54
912 966 7.171508 TCACTATAAATTCTGCCGATCATTCAC 59.828 37.037 0.00 0.00 0.00 3.18
927 981 5.598416 TCATTCACTCGGATGACATAACT 57.402 39.130 0.00 0.00 0.00 2.24
928 982 5.351458 TCATTCACTCGGATGACATAACTG 58.649 41.667 0.00 0.00 0.00 3.16
939 998 1.256376 GACATAACTGCAGCATCGACG 59.744 52.381 15.27 0.00 0.00 5.12
940 999 1.135112 ACATAACTGCAGCATCGACGA 60.135 47.619 15.27 0.00 0.00 4.20
946 1005 0.526211 TGCAGCATCGACGACTACTT 59.474 50.000 0.00 0.00 0.00 2.24
947 1006 0.917259 GCAGCATCGACGACTACTTG 59.083 55.000 0.00 0.00 0.00 3.16
948 1007 1.732732 GCAGCATCGACGACTACTTGT 60.733 52.381 0.00 0.00 0.00 3.16
949 1008 2.477357 GCAGCATCGACGACTACTTGTA 60.477 50.000 0.00 0.00 0.00 2.41
950 1009 3.099362 CAGCATCGACGACTACTTGTAC 58.901 50.000 0.00 0.00 0.00 2.90
951 1010 2.099621 GCATCGACGACTACTTGTACG 58.900 52.381 0.00 0.00 0.00 3.67
952 1011 2.475187 GCATCGACGACTACTTGTACGT 60.475 50.000 0.00 0.00 41.57 3.57
963 1023 4.749099 ACTACTTGTACGTAGCTAGGATCG 59.251 45.833 19.82 9.99 40.36 3.69
968 1028 2.258897 GTAGCTAGGATCGCCGCC 59.741 66.667 0.00 0.00 39.96 6.13
991 1051 4.436317 CGCCGAGCTAGATCTCAGTTATAC 60.436 50.000 6.41 0.00 33.41 1.47
994 1054 6.607689 CCGAGCTAGATCTCAGTTATACTTG 58.392 44.000 6.41 0.00 33.41 3.16
1038 1098 0.826256 CGATCGTCATCCCCTACCCA 60.826 60.000 7.03 0.00 0.00 4.51
1155 1215 2.202756 GTCGTCGCCTCCATGTCC 60.203 66.667 0.00 0.00 0.00 4.02
1206 1266 4.436998 CTCGTGGAGGTGCCGGAC 62.437 72.222 5.05 0.00 40.66 4.79
1377 1449 2.269883 GTCGGGTATTGGGCGGTT 59.730 61.111 0.00 0.00 0.00 4.44
1452 1524 1.021390 CCGTCATGGTCACCTTGCTC 61.021 60.000 4.76 0.62 0.00 4.26
1532 1605 6.223852 TCGAGCAACTTATTTGACTTCTCTT 58.776 36.000 0.00 0.00 37.39 2.85
1533 1606 7.375834 TCGAGCAACTTATTTGACTTCTCTTA 58.624 34.615 0.00 0.00 37.39 2.10
1534 1607 7.542477 TCGAGCAACTTATTTGACTTCTCTTAG 59.458 37.037 0.00 0.00 37.39 2.18
1586 1659 1.915078 ATGCAGGGTCTACAGTGGGC 61.915 60.000 0.00 0.00 0.00 5.36
1941 2014 1.885871 GGCAGCTTCACCATGTTCC 59.114 57.895 0.00 0.00 0.00 3.62
1952 2025 4.652131 ATGTTCCACCGGCGCCAA 62.652 61.111 28.98 10.03 0.00 4.52
2556 2635 1.133761 AGGCATGATCATCTGCTGCTT 60.134 47.619 18.27 8.80 38.45 3.91
2616 2697 5.238650 CCCACACAGAATAAAAAGTTCGACT 59.761 40.000 0.00 0.00 0.00 4.18
2655 2736 1.285578 TTTGCCGCTTTTCTGTTTGC 58.714 45.000 0.00 0.00 0.00 3.68
2666 2747 5.504173 GCTTTTCTGTTTGCGAGTAACTTCT 60.504 40.000 0.00 0.00 0.00 2.85
2676 2757 2.444421 GAGTAACTTCTGGACGGAGGA 58.556 52.381 0.00 0.00 0.00 3.71
2677 2758 2.824341 GAGTAACTTCTGGACGGAGGAA 59.176 50.000 0.00 0.00 0.00 3.36
2678 2759 2.826725 AGTAACTTCTGGACGGAGGAAG 59.173 50.000 0.00 0.00 41.30 3.46
2679 2760 3.459386 ACTTCTGGACGGAGGAAGT 57.541 52.632 8.69 8.69 42.97 3.01
2680 2761 2.599408 ACTTCTGGACGGAGGAAGTA 57.401 50.000 11.55 0.00 44.98 2.24
2681 2762 3.103080 ACTTCTGGACGGAGGAAGTAT 57.897 47.619 11.55 0.00 44.98 2.12
2682 2763 4.246712 ACTTCTGGACGGAGGAAGTATA 57.753 45.455 11.55 0.00 44.98 1.47
2683 2764 3.952967 ACTTCTGGACGGAGGAAGTATAC 59.047 47.826 11.55 0.00 44.98 1.47
2684 2765 3.947612 TCTGGACGGAGGAAGTATACT 57.052 47.619 0.00 0.00 0.00 2.12
2685 2766 3.818180 TCTGGACGGAGGAAGTATACTC 58.182 50.000 5.70 0.01 0.00 2.59
2686 2767 3.458857 TCTGGACGGAGGAAGTATACTCT 59.541 47.826 5.70 0.00 34.22 3.24
2687 2768 3.816523 CTGGACGGAGGAAGTATACTCTC 59.183 52.174 5.70 9.24 34.22 3.20
2705 2786 3.881688 CTCTCTCCGTCCCGAATTACTTA 59.118 47.826 0.00 0.00 0.00 2.24
2706 2787 4.467769 TCTCTCCGTCCCGAATTACTTAT 58.532 43.478 0.00 0.00 0.00 1.73
2707 2788 4.518211 TCTCTCCGTCCCGAATTACTTATC 59.482 45.833 0.00 0.00 0.00 1.75
2708 2789 3.251729 TCTCCGTCCCGAATTACTTATCG 59.748 47.826 0.00 0.00 38.74 2.92
2709 2790 3.213506 TCCGTCCCGAATTACTTATCGA 58.786 45.455 0.00 0.00 41.43 3.59
2710 2791 3.822735 TCCGTCCCGAATTACTTATCGAT 59.177 43.478 2.16 2.16 41.43 3.59
2780 2893 7.044798 ACAGAGATAGTACCTGAGAATTTTGC 58.955 38.462 3.46 0.00 0.00 3.68
2792 2905 2.486203 AGAATTTTGCATGCGTCCGTAA 59.514 40.909 14.09 0.00 0.00 3.18
2909 3043 5.573146 GCTTAAAGCACAAGTTATAGCTGG 58.427 41.667 0.00 0.00 41.89 4.85
2930 3064 2.027073 CGGTACACAGCGCACACAT 61.027 57.895 11.47 0.00 39.04 3.21
2939 3073 1.328680 CAGCGCACACATCACCTAATC 59.671 52.381 11.47 0.00 0.00 1.75
2940 3074 0.301687 GCGCACACATCACCTAATCG 59.698 55.000 0.30 0.00 0.00 3.34
2941 3075 1.640428 CGCACACATCACCTAATCGT 58.360 50.000 0.00 0.00 0.00 3.73
3054 3189 9.628746 GGTTTATTTTAGAACGGCTTTTATTCA 57.371 29.630 0.00 0.00 0.00 2.57
3059 3194 8.791355 TTTTAGAACGGCTTTTATTCAGTTTC 57.209 30.769 0.00 0.00 0.00 2.78
3066 3201 5.633601 CGGCTTTTATTCAGTTTCCCTTTTC 59.366 40.000 0.00 0.00 0.00 2.29
3177 3347 6.743575 AATCCACAACTCCTTTCTAAATCG 57.256 37.500 0.00 0.00 0.00 3.34
3252 3425 4.541705 TCCACAACTCTTTTCCAAATCCA 58.458 39.130 0.00 0.00 0.00 3.41
3312 3487 3.067106 ACGACAAACTAGCCATGTTGAG 58.933 45.455 14.18 5.56 33.56 3.02
3374 3551 4.909696 TTTCGGTCAAGATTGCTTTTCA 57.090 36.364 0.00 0.00 30.14 2.69
3375 3552 3.896648 TCGGTCAAGATTGCTTTTCAC 57.103 42.857 0.00 0.00 30.14 3.18
3401 3578 2.118403 ACTTGACAGGAAGGGGAAGA 57.882 50.000 0.00 0.00 0.00 2.87
3437 3614 2.750350 CTCGGCCAGGACCTTGTT 59.250 61.111 2.24 0.00 0.00 2.83
3440 3617 0.323629 TCGGCCAGGACCTTGTTTAG 59.676 55.000 2.24 0.00 0.00 1.85
3453 3630 0.324943 TGTTTAGGACCTGCAGCTCC 59.675 55.000 18.91 18.91 0.00 4.70
3463 3640 0.392729 CTGCAGCTCCTCAGGAAAGG 60.393 60.000 0.00 0.00 37.81 3.11
3467 3644 0.178891 AGCTCCTCAGGAAAGGGTCA 60.179 55.000 0.00 0.00 37.02 4.02
3474 3651 2.836981 CTCAGGAAAGGGTCAGAGATGT 59.163 50.000 0.00 0.00 33.82 3.06
3491 3668 0.397941 TGTTGCTGCTCCTGCTACTT 59.602 50.000 0.00 0.00 40.48 2.24
3505 3682 2.007547 GCTACTTCAAGCTTCCGGTCC 61.008 57.143 0.00 0.00 39.50 4.46
3524 3701 0.907230 CTCTATAGGGAGGCTGGGGC 60.907 65.000 0.00 0.00 37.82 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.049405 CACGGTTCTTCTGCTTGAAAGTTAT 60.049 40.000 0.00 0.00 33.79 1.89
3 4 2.614057 CACGGTTCTTCTGCTTGAAAGT 59.386 45.455 0.00 0.00 33.79 2.66
4 5 2.031682 CCACGGTTCTTCTGCTTGAAAG 60.032 50.000 0.00 0.00 33.79 2.62
5 6 1.946768 CCACGGTTCTTCTGCTTGAAA 59.053 47.619 0.00 0.00 33.79 2.69
6 7 1.134220 ACCACGGTTCTTCTGCTTGAA 60.134 47.619 0.00 0.00 0.00 2.69
7 8 0.468226 ACCACGGTTCTTCTGCTTGA 59.532 50.000 0.00 0.00 0.00 3.02
8 9 0.868406 GACCACGGTTCTTCTGCTTG 59.132 55.000 0.00 0.00 0.00 4.01
9 10 0.759346 AGACCACGGTTCTTCTGCTT 59.241 50.000 0.00 0.00 0.00 3.91
10 11 0.034059 CAGACCACGGTTCTTCTGCT 59.966 55.000 0.00 0.00 29.71 4.24
11 12 2.533318 CAGACCACGGTTCTTCTGC 58.467 57.895 0.00 0.00 29.71 4.26
12 13 0.034059 AGCAGACCACGGTTCTTCTG 59.966 55.000 6.18 6.18 38.83 3.02
13 14 0.759346 AAGCAGACCACGGTTCTTCT 59.241 50.000 0.00 0.00 0.00 2.85
14 15 1.594331 AAAGCAGACCACGGTTCTTC 58.406 50.000 0.00 0.00 0.00 2.87
15 16 2.158871 TGTAAAGCAGACCACGGTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
16 17 1.414919 TGTAAAGCAGACCACGGTTCT 59.585 47.619 0.00 0.00 0.00 3.01
17 18 1.873698 TGTAAAGCAGACCACGGTTC 58.126 50.000 0.00 0.00 0.00 3.62
18 19 2.158871 TCTTGTAAAGCAGACCACGGTT 60.159 45.455 0.00 0.00 45.70 4.44
19 20 1.414919 TCTTGTAAAGCAGACCACGGT 59.585 47.619 0.00 0.00 45.70 4.83
20 21 2.163818 TCTTGTAAAGCAGACCACGG 57.836 50.000 0.00 0.00 45.70 4.94
21 22 3.498397 ACATTCTTGTAAAGCAGACCACG 59.502 43.478 0.00 0.00 45.70 4.94
22 23 5.438761 AACATTCTTGTAAAGCAGACCAC 57.561 39.130 0.00 0.00 45.70 4.16
23 24 6.463995 AAAACATTCTTGTAAAGCAGACCA 57.536 33.333 0.00 0.00 45.70 4.02
36 37 9.905713 TGGAGTAGCTGAATATAAAACATTCTT 57.094 29.630 0.00 0.00 34.21 2.52
37 38 9.553064 CTGGAGTAGCTGAATATAAAACATTCT 57.447 33.333 0.00 0.00 34.21 2.40
55 56 5.096169 CCGAAATATATGTCGCTGGAGTAG 58.904 45.833 18.25 0.47 35.93 2.57
56 57 4.521639 ACCGAAATATATGTCGCTGGAGTA 59.478 41.667 18.25 0.00 35.93 2.59
57 58 3.321111 ACCGAAATATATGTCGCTGGAGT 59.679 43.478 18.25 8.65 35.93 3.85
58 59 3.914312 ACCGAAATATATGTCGCTGGAG 58.086 45.455 18.25 8.08 35.93 3.86
59 60 4.763279 TCTACCGAAATATATGTCGCTGGA 59.237 41.667 18.25 10.50 35.93 3.86
60 61 5.055642 TCTACCGAAATATATGTCGCTGG 57.944 43.478 18.25 8.43 35.93 4.85
61 62 5.939457 TCTCTACCGAAATATATGTCGCTG 58.061 41.667 18.25 9.37 35.93 5.18
62 63 5.124138 CCTCTCTACCGAAATATATGTCGCT 59.876 44.000 18.25 8.81 35.93 4.93
63 64 5.333513 CCTCTCTACCGAAATATATGTCGC 58.666 45.833 18.25 0.00 35.93 5.19
64 65 5.646793 TCCCTCTCTACCGAAATATATGTCG 59.353 44.000 16.97 16.97 37.01 4.35
65 66 6.660094 ACTCCCTCTCTACCGAAATATATGTC 59.340 42.308 0.00 0.00 0.00 3.06
66 67 6.553857 ACTCCCTCTCTACCGAAATATATGT 58.446 40.000 0.00 0.00 0.00 2.29
67 68 8.754991 ATACTCCCTCTCTACCGAAATATATG 57.245 38.462 0.00 0.00 0.00 1.78
68 69 9.771140 AAATACTCCCTCTCTACCGAAATATAT 57.229 33.333 0.00 0.00 0.00 0.86
69 70 9.021807 CAAATACTCCCTCTCTACCGAAATATA 57.978 37.037 0.00 0.00 0.00 0.86
70 71 7.509659 ACAAATACTCCCTCTCTACCGAAATAT 59.490 37.037 0.00 0.00 0.00 1.28
71 72 6.837568 ACAAATACTCCCTCTCTACCGAAATA 59.162 38.462 0.00 0.00 0.00 1.40
72 73 5.661759 ACAAATACTCCCTCTCTACCGAAAT 59.338 40.000 0.00 0.00 0.00 2.17
73 74 5.021458 ACAAATACTCCCTCTCTACCGAAA 58.979 41.667 0.00 0.00 0.00 3.46
74 75 4.607239 ACAAATACTCCCTCTCTACCGAA 58.393 43.478 0.00 0.00 0.00 4.30
75 76 4.246712 ACAAATACTCCCTCTCTACCGA 57.753 45.455 0.00 0.00 0.00 4.69
76 77 6.490721 AGATAACAAATACTCCCTCTCTACCG 59.509 42.308 0.00 0.00 0.00 4.02
77 78 7.842887 AGATAACAAATACTCCCTCTCTACC 57.157 40.000 0.00 0.00 0.00 3.18
78 79 9.138596 AGAAGATAACAAATACTCCCTCTCTAC 57.861 37.037 0.00 0.00 0.00 2.59
79 80 9.716556 AAGAAGATAACAAATACTCCCTCTCTA 57.283 33.333 0.00 0.00 0.00 2.43
80 81 8.482128 CAAGAAGATAACAAATACTCCCTCTCT 58.518 37.037 0.00 0.00 0.00 3.10
81 82 8.478877 TCAAGAAGATAACAAATACTCCCTCTC 58.521 37.037 0.00 0.00 0.00 3.20
82 83 8.380742 TCAAGAAGATAACAAATACTCCCTCT 57.619 34.615 0.00 0.00 0.00 3.69
83 84 8.478877 TCTCAAGAAGATAACAAATACTCCCTC 58.521 37.037 0.00 0.00 0.00 4.30
84 85 8.380742 TCTCAAGAAGATAACAAATACTCCCT 57.619 34.615 0.00 0.00 0.00 4.20
85 86 8.478877 TCTCTCAAGAAGATAACAAATACTCCC 58.521 37.037 0.00 0.00 32.19 4.30
86 87 9.877178 TTCTCTCAAGAAGATAACAAATACTCC 57.123 33.333 0.00 0.00 36.59 3.85
102 103 9.468532 CGTGTATCATGATTTATTCTCTCAAGA 57.531 33.333 14.65 0.00 0.00 3.02
110 111 8.982685 AGATGTCACGTGTATCATGATTTATTC 58.017 33.333 25.77 13.02 0.00 1.75
130 131 4.754372 TCATGTGTTTGCTCAAGATGTC 57.246 40.909 0.00 0.00 0.00 3.06
188 195 2.789893 GCTCGGAACATTCGACTGATAC 59.210 50.000 10.04 0.00 32.86 2.24
193 200 0.603569 ACAGCTCGGAACATTCGACT 59.396 50.000 0.00 0.00 32.86 4.18
212 219 3.011595 TGGGTAACACTACCTAGCCTACA 59.988 47.826 1.56 0.00 46.20 2.74
286 293 0.026285 CCGACGACATGCCGATTTTC 59.974 55.000 8.88 0.00 0.00 2.29
319 326 1.621814 ACTTCTACCTAAGCCACGCAA 59.378 47.619 0.00 0.00 0.00 4.85
321 328 2.480932 GGTACTTCTACCTAAGCCACGC 60.481 54.545 0.00 0.00 39.70 5.34
322 329 3.433513 GGTACTTCTACCTAAGCCACG 57.566 52.381 0.00 0.00 39.70 4.94
429 438 5.789643 TCTTTTGTCATTTTTGAGAGGGG 57.210 39.130 0.00 0.00 0.00 4.79
434 443 6.514947 TGTCCCATCTTTTGTCATTTTTGAG 58.485 36.000 0.00 0.00 0.00 3.02
575 595 7.387948 GCTAGTTCTTTTACCAAGTCTTCATCA 59.612 37.037 0.00 0.00 0.00 3.07
576 596 7.604545 AGCTAGTTCTTTTACCAAGTCTTCATC 59.395 37.037 0.00 0.00 0.00 2.92
577 597 7.454225 AGCTAGTTCTTTTACCAAGTCTTCAT 58.546 34.615 0.00 0.00 0.00 2.57
681 708 0.966920 TCGGAGAGTTCCTTGTGACC 59.033 55.000 0.00 0.00 41.67 4.02
690 717 3.242123 GCATTTGATTCGTCGGAGAGTTC 60.242 47.826 0.00 0.00 36.95 3.01
699 726 5.003778 GCATTGTACTTGCATTTGATTCGTC 59.996 40.000 14.12 0.00 39.90 4.20
753 780 1.616865 GTTGGGGTTTCTTGTTAGGGC 59.383 52.381 0.00 0.00 0.00 5.19
761 788 3.031013 CTGGTTCTTGTTGGGGTTTCTT 58.969 45.455 0.00 0.00 0.00 2.52
763 790 1.068588 GCTGGTTCTTGTTGGGGTTTC 59.931 52.381 0.00 0.00 0.00 2.78
787 841 6.202954 TCTCGTTCTTGGATCTTCTGAAAAAC 59.797 38.462 0.00 0.00 0.00 2.43
793 847 5.461737 GCTAATCTCGTTCTTGGATCTTCTG 59.538 44.000 0.00 0.00 0.00 3.02
836 890 3.008330 CAAGAGCCACAGAGAAGGAATG 58.992 50.000 0.00 0.00 0.00 2.67
839 893 0.979665 CCAAGAGCCACAGAGAAGGA 59.020 55.000 0.00 0.00 0.00 3.36
846 900 2.281070 ACGCACCAAGAGCCACAG 60.281 61.111 0.00 0.00 0.00 3.66
847 901 2.591429 CACGCACCAAGAGCCACA 60.591 61.111 0.00 0.00 0.00 4.17
867 921 3.063725 GTGAGAGATGCTGCAGAATGAAC 59.936 47.826 20.43 6.08 39.69 3.18
868 922 3.055312 AGTGAGAGATGCTGCAGAATGAA 60.055 43.478 20.43 0.00 39.69 2.57
869 923 2.500504 AGTGAGAGATGCTGCAGAATGA 59.499 45.455 20.43 0.00 39.69 2.57
870 924 2.907634 AGTGAGAGATGCTGCAGAATG 58.092 47.619 20.43 0.00 40.87 2.67
871 925 4.959560 ATAGTGAGAGATGCTGCAGAAT 57.040 40.909 20.43 14.00 0.00 2.40
872 926 5.859205 TTATAGTGAGAGATGCTGCAGAA 57.141 39.130 20.43 7.68 0.00 3.02
873 927 5.859205 TTTATAGTGAGAGATGCTGCAGA 57.141 39.130 20.43 2.70 0.00 4.26
874 928 6.930164 AGAATTTATAGTGAGAGATGCTGCAG 59.070 38.462 10.11 10.11 0.00 4.41
876 930 6.347563 GCAGAATTTATAGTGAGAGATGCTGC 60.348 42.308 0.00 0.00 36.23 5.25
878 932 6.229733 GGCAGAATTTATAGTGAGAGATGCT 58.770 40.000 0.00 0.00 0.00 3.79
879 933 5.119898 CGGCAGAATTTATAGTGAGAGATGC 59.880 44.000 0.00 0.00 0.00 3.91
880 934 6.450545 TCGGCAGAATTTATAGTGAGAGATG 58.549 40.000 0.00 0.00 0.00 2.90
881 935 6.656632 TCGGCAGAATTTATAGTGAGAGAT 57.343 37.500 0.00 0.00 0.00 2.75
904 958 5.987953 CAGTTATGTCATCCGAGTGAATGAT 59.012 40.000 0.00 0.00 0.00 2.45
912 966 1.863454 GCTGCAGTTATGTCATCCGAG 59.137 52.381 16.64 0.00 0.00 4.63
917 971 2.868583 GTCGATGCTGCAGTTATGTCAT 59.131 45.455 16.64 8.78 0.00 3.06
921 975 1.256376 GTCGTCGATGCTGCAGTTATG 59.744 52.381 16.64 3.70 0.00 1.90
927 981 0.526211 AAGTAGTCGTCGATGCTGCA 59.474 50.000 4.13 4.13 0.00 4.41
928 982 0.917259 CAAGTAGTCGTCGATGCTGC 59.083 55.000 0.00 4.57 0.00 5.25
939 998 5.107530 CGATCCTAGCTACGTACAAGTAGTC 60.108 48.000 8.98 3.41 44.33 2.59
940 999 4.749099 CGATCCTAGCTACGTACAAGTAGT 59.251 45.833 8.98 0.00 44.33 2.73
946 1005 1.233019 GGCGATCCTAGCTACGTACA 58.767 55.000 0.00 0.00 34.52 2.90
947 1006 0.165511 CGGCGATCCTAGCTACGTAC 59.834 60.000 0.00 0.00 34.52 3.67
948 1007 1.572085 GCGGCGATCCTAGCTACGTA 61.572 60.000 12.98 0.00 34.52 3.57
949 1008 2.905807 GCGGCGATCCTAGCTACGT 61.906 63.158 12.98 0.00 34.52 3.57
950 1009 2.126812 GCGGCGATCCTAGCTACG 60.127 66.667 12.98 0.00 34.52 3.51
951 1010 2.258897 GGCGGCGATCCTAGCTAC 59.741 66.667 12.98 0.00 34.52 3.58
952 1011 3.362797 CGGCGGCGATCCTAGCTA 61.363 66.667 29.19 0.00 34.52 3.32
968 1028 0.665835 AACTGAGATCTAGCTCGGCG 59.334 55.000 0.00 0.00 43.56 6.46
972 1032 6.083630 CGCAAGTATAACTGAGATCTAGCTC 58.916 44.000 0.00 0.00 35.46 4.09
991 1051 2.513065 GGACACGCCATTGACGCAAG 62.513 60.000 0.00 0.00 39.45 4.01
994 1054 3.047280 TGGACACGCCATTGACGC 61.047 61.111 0.00 0.00 43.33 5.19
1047 1107 2.202932 ATGAGCGGGATGACGTGC 60.203 61.111 0.00 0.00 35.98 5.34
1219 1279 2.284699 CTGGTTCCGGTCCTCCCT 60.285 66.667 16.54 0.00 0.00 4.20
1377 1449 2.434185 GTCCTCCGCGCAATGTCA 60.434 61.111 8.75 0.00 0.00 3.58
1431 1503 1.302431 CAAGGTGACCATGACGGCA 60.302 57.895 3.63 0.00 39.03 5.69
1550 1623 1.800586 GCATGCAAAGTCGAACTGAGA 59.199 47.619 14.21 0.00 0.00 3.27
1551 1624 1.532437 TGCATGCAAAGTCGAACTGAG 59.468 47.619 20.30 0.00 0.00 3.35
1552 1625 1.532437 CTGCATGCAAAGTCGAACTGA 59.468 47.619 22.88 0.00 0.00 3.41
1560 1633 1.073763 TGTAGACCCTGCATGCAAAGT 59.926 47.619 22.88 20.84 0.00 2.66
1676 1749 1.265454 AAAGGAGCCGGTAGAGGGTG 61.265 60.000 1.90 0.00 42.85 4.61
1941 2014 3.864686 CTCGAATTGGCGCCGGTG 61.865 66.667 23.90 11.67 0.00 4.94
1973 2046 2.199652 CCTGCCGGAGAGCTCTAGG 61.200 68.421 25.58 25.58 0.00 3.02
2030 2103 4.065281 GGGTAGTCGTGCACCGCT 62.065 66.667 12.15 11.90 35.53 5.52
2204 2277 2.285069 TAGGGCCAGGCGAGGAAA 60.285 61.111 6.18 0.00 0.00 3.13
2303 2376 2.489938 TGTGCTCCTTGGTTATGACC 57.510 50.000 0.00 0.00 46.71 4.02
2327 2400 4.664267 AGCTCCTCCACCCTGCCA 62.664 66.667 0.00 0.00 0.00 4.92
2525 2604 4.230603 CATGCCTTCATGCCGTCT 57.769 55.556 0.00 0.00 43.00 4.18
2556 2635 2.033675 CACACTACCACACGTACACTCA 59.966 50.000 0.00 0.00 0.00 3.41
2616 2697 7.441017 GGCAAATATAAAGGCAAATGGTGATA 58.559 34.615 0.00 0.00 0.00 2.15
2655 2736 1.132643 CCTCCGTCCAGAAGTTACTCG 59.867 57.143 0.00 0.00 0.00 4.18
2660 2741 1.718280 ACTTCCTCCGTCCAGAAGTT 58.282 50.000 0.00 0.00 46.08 2.66
2666 2747 3.458857 AGAGAGTATACTTCCTCCGTCCA 59.541 47.826 14.83 0.00 0.00 4.02
2764 2877 3.119849 ACGCATGCAAAATTCTCAGGTAC 60.120 43.478 19.57 0.00 0.00 3.34
2780 2893 4.787381 TCATGTTATTTACGGACGCATG 57.213 40.909 0.00 0.00 35.08 4.06
2792 2905 6.096423 ACATTGCTGCTCTTCATCATGTTATT 59.904 34.615 0.00 0.00 0.00 1.40
2909 3043 1.952133 TGTGCGCTGTGTACCGTTC 60.952 57.895 9.73 0.00 31.26 3.95
2930 3064 0.800683 CGCAAGCGACGATTAGGTGA 60.801 55.000 9.11 0.00 42.83 4.02
2939 3073 2.778997 GCTCACTACGCAAGCGACG 61.779 63.158 22.30 13.04 42.83 5.12
2940 3074 2.445438 GGCTCACTACGCAAGCGAC 61.445 63.158 22.30 1.37 42.83 5.19
2941 3075 2.126071 GGCTCACTACGCAAGCGA 60.126 61.111 22.30 4.03 42.83 4.93
3054 3189 6.436027 AGAGAAGAAAAGGAAAAGGGAAACT 58.564 36.000 0.00 0.00 0.00 2.66
3059 3194 9.481340 CAAATTAAGAGAAGAAAAGGAAAAGGG 57.519 33.333 0.00 0.00 0.00 3.95
3220 3393 8.754080 TGGAAAAGAGTTGTGGATTTTAAGAAA 58.246 29.630 0.00 0.00 0.00 2.52
3223 3396 8.940768 TTTGGAAAAGAGTTGTGGATTTTAAG 57.059 30.769 0.00 0.00 0.00 1.85
3271 3445 8.679288 TGTCGTATCTTTACTGTTTTAGTAGC 57.321 34.615 0.00 0.00 42.57 3.58
3312 3487 2.421424 GGACTGCCACTTCACATTGATC 59.579 50.000 0.00 0.00 0.00 2.92
3358 3533 5.581605 TCTTGTGTGAAAAGCAATCTTGAC 58.418 37.500 0.00 0.00 31.78 3.18
3374 3551 3.545703 CCTTCCTGTCAAGTTCTTGTGT 58.454 45.455 11.52 0.00 0.00 3.72
3375 3552 2.880890 CCCTTCCTGTCAAGTTCTTGTG 59.119 50.000 11.52 4.85 0.00 3.33
3401 3578 0.994050 GGTATGCCCTCCCCTCCTTT 60.994 60.000 0.00 0.00 0.00 3.11
3422 3599 0.676782 CCTAAACAAGGTCCTGGCCG 60.677 60.000 0.00 0.00 40.94 6.13
3423 3600 0.696501 TCCTAAACAAGGTCCTGGCC 59.303 55.000 0.00 0.00 46.62 5.36
3424 3601 1.613520 GGTCCTAAACAAGGTCCTGGC 60.614 57.143 0.00 0.00 46.81 4.85
3425 3602 2.491675 GGTCCTAAACAAGGTCCTGG 57.508 55.000 0.00 0.00 46.81 4.45
3453 3630 2.836981 ACATCTCTGACCCTTTCCTGAG 59.163 50.000 0.00 0.00 0.00 3.35
3461 3638 0.035630 GCAGCAACATCTCTGACCCT 60.036 55.000 0.00 0.00 32.26 4.34
3463 3640 1.367659 GAGCAGCAACATCTCTGACC 58.632 55.000 0.00 0.00 32.26 4.02
3467 3644 0.392729 GCAGGAGCAGCAACATCTCT 60.393 55.000 0.00 0.00 41.58 3.10
3474 3651 0.686789 TGAAGTAGCAGGAGCAGCAA 59.313 50.000 0.00 0.00 45.49 3.91
3491 3668 2.160721 ATAGAGGACCGGAAGCTTGA 57.839 50.000 9.46 0.00 0.00 3.02
3505 3682 0.907230 GCCCCAGCCTCCCTATAGAG 60.907 65.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.