Multiple sequence alignment - TraesCS1D01G048300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G048300 chr1D 100.000 4411 0 0 1 4411 28217217 28212807 0.000000e+00 8146.0
1 TraesCS1D01G048300 chr1D 85.169 472 34 18 458 900 490366364 490366828 6.730000e-123 451.0
2 TraesCS1D01G048300 chr1A 89.882 1700 115 24 920 2572 29244311 29242622 0.000000e+00 2134.0
3 TraesCS1D01G048300 chr1A 95.478 774 29 2 2784 3557 29241972 29241205 0.000000e+00 1230.0
4 TraesCS1D01G048300 chr1A 85.317 647 83 7 1086 1725 294735319 294734678 0.000000e+00 658.0
5 TraesCS1D01G048300 chr1A 89.401 217 14 7 2573 2784 29242257 29242045 9.410000e-67 265.0
6 TraesCS1D01G048300 chr1A 85.377 212 16 9 3575 3773 561331246 561331455 5.780000e-49 206.0
7 TraesCS1D01G048300 chr1A 82.743 226 28 7 3556 3773 38371564 38371342 1.620000e-44 191.0
8 TraesCS1D01G048300 chr1B 92.134 1462 96 9 2784 4237 46874874 46873424 0.000000e+00 2045.0
9 TraesCS1D01G048300 chr1B 92.451 1126 72 2 920 2033 46877223 46876099 0.000000e+00 1596.0
10 TraesCS1D01G048300 chr1B 86.438 553 63 12 2023 2572 46875945 46875402 2.940000e-166 595.0
11 TraesCS1D01G048300 chr1B 78.013 614 112 12 1328 1928 666029523 666030126 9.020000e-97 364.0
12 TraesCS1D01G048300 chr1B 91.071 168 13 2 2574 2740 46875139 46874973 4.440000e-55 226.0
13 TraesCS1D01G048300 chr1B 91.818 110 7 1 115 224 46877324 46877217 7.640000e-33 152.0
14 TraesCS1D01G048300 chr4D 97.802 546 9 2 360 902 389494314 389493769 0.000000e+00 939.0
15 TraesCS1D01G048300 chr4D 96.000 150 6 0 219 368 389494483 389494334 1.230000e-60 244.0
16 TraesCS1D01G048300 chr4D 82.403 233 25 9 3557 3774 320043205 320042974 5.820000e-44 189.0
17 TraesCS1D01G048300 chr4D 81.614 223 35 5 3556 3773 118324816 118325037 3.510000e-41 180.0
18 TraesCS1D01G048300 chr4D 86.577 149 18 2 3556 3703 116786088 116786235 3.530000e-36 163.0
19 TraesCS1D01G048300 chr2B 83.740 615 70 7 1118 1725 762509529 762510120 4.980000e-154 555.0
20 TraesCS1D01G048300 chr2D 81.627 713 75 33 228 900 75269170 75268474 1.400000e-149 540.0
21 TraesCS1D01G048300 chr2D 81.627 713 75 32 228 900 650644797 650645493 1.400000e-149 540.0
22 TraesCS1D01G048300 chr2D 81.173 324 47 9 1386 1697 478833555 478833234 9.470000e-62 248.0
23 TraesCS1D01G048300 chr2D 82.174 230 27 10 3555 3773 423607435 423607661 7.530000e-43 185.0
24 TraesCS1D01G048300 chr2D 88.889 144 14 2 3556 3698 298839530 298839672 4.530000e-40 176.0
25 TraesCS1D01G048300 chr3D 80.645 713 82 33 228 900 610395692 610394996 6.590000e-138 501.0
26 TraesCS1D01G048300 chr5D 80.654 703 84 34 228 900 483793301 483792621 8.520000e-137 497.0
27 TraesCS1D01G048300 chr5D 86.755 151 16 4 3556 3703 554154226 554154077 9.810000e-37 165.0
28 TraesCS1D01G048300 chr7D 87.901 405 40 6 1328 1725 214938811 214939213 6.680000e-128 468.0
29 TraesCS1D01G048300 chr7D 77.113 852 157 27 1006 1835 19655049 19655884 4.020000e-125 459.0
30 TraesCS1D01G048300 chr7D 88.889 144 13 3 3556 3697 606313602 606313744 1.630000e-39 174.0
31 TraesCS1D01G048300 chr4A 88.614 202 21 1 701 902 647654030 647654229 1.230000e-60 244.0
32 TraesCS1D01G048300 chr4A 81.435 237 24 9 3557 3774 153245983 153246218 4.530000e-40 176.0
33 TraesCS1D01G048300 chr4A 79.389 131 24 3 771 900 48162537 48162665 6.080000e-14 89.8
34 TraesCS1D01G048300 chr7B 80.745 322 52 2 1386 1697 74325885 74326206 4.410000e-60 243.0
35 TraesCS1D01G048300 chrUn 85.024 207 17 10 3579 3773 12474599 12474803 9.680000e-47 198.0
36 TraesCS1D01G048300 chrUn 81.364 220 24 9 3572 3774 26520167 26519948 3.530000e-36 163.0
37 TraesCS1D01G048300 chr4B 82.096 229 28 7 3556 3774 400685402 400685627 2.710000e-42 183.0
38 TraesCS1D01G048300 chr7A 80.556 252 34 10 1461 1700 427622680 427622432 3.510000e-41 180.0
39 TraesCS1D01G048300 chr3B 82.857 140 21 3 228 366 16461610 16461473 5.990000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G048300 chr1D 28212807 28217217 4410 True 8146.000000 8146 100.0000 1 4411 1 chr1D.!!$R1 4410
1 TraesCS1D01G048300 chr1A 29241205 29244311 3106 True 1209.666667 2134 91.5870 920 3557 3 chr1A.!!$R3 2637
2 TraesCS1D01G048300 chr1A 294734678 294735319 641 True 658.000000 658 85.3170 1086 1725 1 chr1A.!!$R2 639
3 TraesCS1D01G048300 chr1B 46873424 46877324 3900 True 922.800000 2045 90.7824 115 4237 5 chr1B.!!$R1 4122
4 TraesCS1D01G048300 chr1B 666029523 666030126 603 False 364.000000 364 78.0130 1328 1928 1 chr1B.!!$F1 600
5 TraesCS1D01G048300 chr4D 389493769 389494483 714 True 591.500000 939 96.9010 219 902 2 chr4D.!!$R2 683
6 TraesCS1D01G048300 chr2B 762509529 762510120 591 False 555.000000 555 83.7400 1118 1725 1 chr2B.!!$F1 607
7 TraesCS1D01G048300 chr2D 75268474 75269170 696 True 540.000000 540 81.6270 228 900 1 chr2D.!!$R1 672
8 TraesCS1D01G048300 chr2D 650644797 650645493 696 False 540.000000 540 81.6270 228 900 1 chr2D.!!$F3 672
9 TraesCS1D01G048300 chr3D 610394996 610395692 696 True 501.000000 501 80.6450 228 900 1 chr3D.!!$R1 672
10 TraesCS1D01G048300 chr5D 483792621 483793301 680 True 497.000000 497 80.6540 228 900 1 chr5D.!!$R1 672
11 TraesCS1D01G048300 chr7D 19655049 19655884 835 False 459.000000 459 77.1130 1006 1835 1 chr7D.!!$F1 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.457337 GGCAACTACTACGACCACCG 60.457 60.0 0.0 0.0 45.44 4.94 F
1768 1873 0.394488 ACAGATCGAGAAGCGGAGGA 60.394 55.0 0.0 0.0 41.33 3.71 F
2655 3337 0.535335 GCAGTGGTCCCTCATTACGA 59.465 55.0 0.0 0.0 0.00 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 1968 0.320160 GGTTAACCAAGCCGTCGTCT 60.320 55.0 20.12 0.0 35.64 4.18 R
2960 3719 0.671781 CCTTGACGACTGCTTGGAGG 60.672 60.0 0.00 0.0 0.00 4.30 R
4315 5085 0.032912 TAGGTGGTGATCCTACGCCA 60.033 55.0 11.88 0.0 46.28 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 5.858475 GTCAAAATCTGACGTCATTAGTGG 58.142 41.667 20.40 6.28 44.95 4.00
54 55 5.637810 GTCAAAATCTGACGTCATTAGTGGA 59.362 40.000 20.40 12.04 44.95 4.02
55 56 5.869344 TCAAAATCTGACGTCATTAGTGGAG 59.131 40.000 20.40 4.68 0.00 3.86
56 57 5.407407 AAATCTGACGTCATTAGTGGAGT 57.593 39.130 20.40 8.05 0.00 3.85
57 58 4.640789 ATCTGACGTCATTAGTGGAGTC 57.359 45.455 20.40 6.92 34.80 3.36
58 59 3.687125 TCTGACGTCATTAGTGGAGTCT 58.313 45.455 20.40 0.00 35.07 3.24
59 60 4.840271 TCTGACGTCATTAGTGGAGTCTA 58.160 43.478 20.40 0.00 35.07 2.59
60 61 5.250982 TCTGACGTCATTAGTGGAGTCTAA 58.749 41.667 20.40 0.00 35.07 2.10
61 62 5.708697 TCTGACGTCATTAGTGGAGTCTAAA 59.291 40.000 20.40 0.00 35.07 1.85
62 63 6.208007 TCTGACGTCATTAGTGGAGTCTAAAA 59.792 38.462 20.40 0.00 35.07 1.52
63 64 6.751157 TGACGTCATTAGTGGAGTCTAAAAA 58.249 36.000 15.76 0.00 35.07 1.94
87 88 9.762381 AAAATTGTAAAGATTACATAGGGTGGA 57.238 29.630 3.98 0.00 0.00 4.02
88 89 9.936329 AAATTGTAAAGATTACATAGGGTGGAT 57.064 29.630 3.98 0.00 0.00 3.41
89 90 8.924511 ATTGTAAAGATTACATAGGGTGGATG 57.075 34.615 3.98 0.00 0.00 3.51
90 91 6.837312 TGTAAAGATTACATAGGGTGGATGG 58.163 40.000 0.00 0.00 0.00 3.51
91 92 4.373156 AAGATTACATAGGGTGGATGGC 57.627 45.455 0.00 0.00 0.00 4.40
92 93 3.326521 AGATTACATAGGGTGGATGGCA 58.673 45.455 0.00 0.00 0.00 4.92
93 94 3.721575 AGATTACATAGGGTGGATGGCAA 59.278 43.478 0.00 0.00 0.00 4.52
94 95 3.290948 TTACATAGGGTGGATGGCAAC 57.709 47.619 0.00 0.00 0.00 4.17
95 96 1.298953 ACATAGGGTGGATGGCAACT 58.701 50.000 0.00 0.00 37.61 3.16
96 97 2.487775 ACATAGGGTGGATGGCAACTA 58.512 47.619 0.00 0.00 37.61 2.24
97 98 2.172717 ACATAGGGTGGATGGCAACTAC 59.827 50.000 2.56 2.56 37.61 2.73
98 99 2.263895 TAGGGTGGATGGCAACTACT 57.736 50.000 10.84 1.98 37.61 2.57
99 100 2.263895 AGGGTGGATGGCAACTACTA 57.736 50.000 10.84 0.00 37.61 1.82
100 101 1.838077 AGGGTGGATGGCAACTACTAC 59.162 52.381 10.84 5.10 37.61 2.73
101 102 1.472728 GGGTGGATGGCAACTACTACG 60.473 57.143 10.84 0.00 37.61 3.51
102 103 1.479323 GGTGGATGGCAACTACTACGA 59.521 52.381 10.84 0.00 37.61 3.43
103 104 2.537401 GTGGATGGCAACTACTACGAC 58.463 52.381 4.00 0.00 37.61 4.34
104 105 1.479323 TGGATGGCAACTACTACGACC 59.521 52.381 0.00 0.00 37.61 4.79
105 106 1.479323 GGATGGCAACTACTACGACCA 59.521 52.381 0.00 0.00 37.61 4.02
106 107 2.537401 GATGGCAACTACTACGACCAC 58.463 52.381 0.00 0.00 37.61 4.16
107 108 0.604578 TGGCAACTACTACGACCACC 59.395 55.000 0.00 0.00 37.61 4.61
108 109 0.457337 GGCAACTACTACGACCACCG 60.457 60.000 0.00 0.00 45.44 4.94
109 110 0.457337 GCAACTACTACGACCACCGG 60.457 60.000 0.00 0.00 43.93 5.28
110 111 1.167851 CAACTACTACGACCACCGGA 58.832 55.000 9.46 0.00 43.93 5.14
111 112 1.541147 CAACTACTACGACCACCGGAA 59.459 52.381 9.46 0.00 43.93 4.30
112 113 1.909700 ACTACTACGACCACCGGAAA 58.090 50.000 9.46 0.00 43.93 3.13
113 114 2.238521 ACTACTACGACCACCGGAAAA 58.761 47.619 9.46 0.00 43.93 2.29
135 136 0.943835 CGACAGCAACGGTGATCACA 60.944 55.000 26.47 0.00 34.87 3.58
182 183 2.902523 CTCTCACCATGTGACATCAGG 58.097 52.381 0.00 0.00 37.67 3.86
183 184 2.498885 CTCTCACCATGTGACATCAGGA 59.501 50.000 8.73 0.10 37.67 3.86
184 185 2.498885 TCTCACCATGTGACATCAGGAG 59.501 50.000 8.73 9.11 37.67 3.69
193 194 3.954258 TGTGACATCAGGAGATCACGTAT 59.046 43.478 0.00 0.00 33.78 3.06
196 197 3.300388 ACATCAGGAGATCACGTATGGT 58.700 45.455 0.00 0.00 30.20 3.55
290 291 6.037098 CCGTCCATACAAAACAAAGTTTTGA 58.963 36.000 30.71 19.23 40.73 2.69
309 310 7.550906 AGTTTTGAAGATCTATACAAGGCACTC 59.449 37.037 0.00 0.00 38.49 3.51
456 485 1.326951 AAAAGTGTGCCGCCACCTTT 61.327 50.000 7.03 7.03 40.73 3.11
482 511 3.200165 TCTCTCCGTTCACATCCTCTCTA 59.800 47.826 0.00 0.00 0.00 2.43
486 516 2.761208 CCGTTCACATCCTCTCTACCTT 59.239 50.000 0.00 0.00 0.00 3.50
509 541 7.609532 CCTTCATGGAAAACAGTTATTCTCTCT 59.390 37.037 0.00 0.00 38.35 3.10
551 583 1.346068 GTCACAGCCTCTGTCTCCTTT 59.654 52.381 0.00 0.00 43.43 3.11
610 657 2.760092 CTCCTCACCTTTCTCCTCTCTG 59.240 54.545 0.00 0.00 0.00 3.35
902 961 4.490696 TGCCATCGCACCTTTTCA 57.509 50.000 0.00 0.00 41.12 2.69
903 962 2.959967 TGCCATCGCACCTTTTCAT 58.040 47.368 0.00 0.00 41.12 2.57
904 963 1.255882 TGCCATCGCACCTTTTCATT 58.744 45.000 0.00 0.00 41.12 2.57
905 964 2.441410 TGCCATCGCACCTTTTCATTA 58.559 42.857 0.00 0.00 41.12 1.90
906 965 2.822561 TGCCATCGCACCTTTTCATTAA 59.177 40.909 0.00 0.00 41.12 1.40
907 966 3.179048 GCCATCGCACCTTTTCATTAAC 58.821 45.455 0.00 0.00 34.03 2.01
908 967 3.366883 GCCATCGCACCTTTTCATTAACA 60.367 43.478 0.00 0.00 34.03 2.41
909 968 4.165779 CCATCGCACCTTTTCATTAACAC 58.834 43.478 0.00 0.00 0.00 3.32
910 969 4.320861 CCATCGCACCTTTTCATTAACACA 60.321 41.667 0.00 0.00 0.00 3.72
911 970 5.401550 CATCGCACCTTTTCATTAACACAT 58.598 37.500 0.00 0.00 0.00 3.21
912 971 5.446143 TCGCACCTTTTCATTAACACATT 57.554 34.783 0.00 0.00 0.00 2.71
913 972 6.561737 TCGCACCTTTTCATTAACACATTA 57.438 33.333 0.00 0.00 0.00 1.90
914 973 6.607689 TCGCACCTTTTCATTAACACATTAG 58.392 36.000 0.00 0.00 0.00 1.73
915 974 5.286082 CGCACCTTTTCATTAACACATTAGC 59.714 40.000 0.00 0.00 0.00 3.09
916 975 5.576774 GCACCTTTTCATTAACACATTAGCC 59.423 40.000 0.00 0.00 0.00 3.93
917 976 6.686630 CACCTTTTCATTAACACATTAGCCA 58.313 36.000 0.00 0.00 0.00 4.75
918 977 7.322664 CACCTTTTCATTAACACATTAGCCAT 58.677 34.615 0.00 0.00 0.00 4.40
919 978 7.818930 CACCTTTTCATTAACACATTAGCCATT 59.181 33.333 0.00 0.00 0.00 3.16
920 979 8.374743 ACCTTTTCATTAACACATTAGCCATTT 58.625 29.630 0.00 0.00 0.00 2.32
921 980 9.868277 CCTTTTCATTAACACATTAGCCATTTA 57.132 29.630 0.00 0.00 0.00 1.40
923 982 8.925161 TTTCATTAACACATTAGCCATTTAGC 57.075 30.769 0.00 0.00 0.00 3.09
924 983 7.038154 TCATTAACACATTAGCCATTTAGCC 57.962 36.000 0.00 0.00 0.00 3.93
925 984 6.833416 TCATTAACACATTAGCCATTTAGCCT 59.167 34.615 0.00 0.00 0.00 4.58
972 1031 1.104630 ACGTAGAGAGGCTGCTTACC 58.895 55.000 0.00 0.00 0.00 2.85
1020 1094 2.859165 TGGCCTTCTTCCTAGTGTTG 57.141 50.000 3.32 0.00 0.00 3.33
1033 1107 2.550830 AGTGTTGATGTCCTCGCTTT 57.449 45.000 0.00 0.00 0.00 3.51
1203 1277 3.845259 TACGGCCCGCTGATGACC 61.845 66.667 1.23 0.00 0.00 4.02
1476 1558 4.148825 GTCCTCGGCATGCTCGGT 62.149 66.667 18.92 0.00 0.00 4.69
1581 1677 4.162690 ATGTTCTCCGCCGGCCTC 62.163 66.667 23.46 5.56 0.00 4.70
1768 1873 0.394488 ACAGATCGAGAAGCGGAGGA 60.394 55.000 0.00 0.00 41.33 3.71
1781 1886 4.699522 GAGGAACGCCCGGCAAGT 62.700 66.667 10.77 0.00 40.87 3.16
1860 1968 1.192146 AGCAAGGAGGCAAGGACGTA 61.192 55.000 0.00 0.00 35.83 3.57
1946 2061 1.643832 GTGCAGAATCGAATCGCCC 59.356 57.895 12.51 0.97 0.00 6.13
2028 2319 9.627123 TCCGGATTGATTTACTAATCTTTTGAT 57.373 29.630 0.00 0.00 40.68 2.57
2199 2498 6.035217 TGTTCAATATCGGCAATGAAACATG 58.965 36.000 0.00 0.00 33.93 3.21
2208 2507 5.182950 TCGGCAATGAAACATGTAAAGTCAT 59.817 36.000 0.00 3.68 0.00 3.06
2221 2521 7.755591 CATGTAAAGTCATGTGCAGTTTAGAT 58.244 34.615 0.00 0.00 39.93 1.98
2255 2555 8.213518 TGAATTATCAATAAGCACTTCTGGTC 57.786 34.615 0.00 0.00 30.99 4.02
2261 2561 7.849804 TCAATAAGCACTTCTGGTCTTAATC 57.150 36.000 0.00 0.00 0.00 1.75
2332 2633 9.667107 TGCTTTCATATATATAGCCCAAGTAAC 57.333 33.333 11.68 0.00 0.00 2.50
2481 2791 9.855021 TTCCTCTCTTTTTACTTTGACAAAAAG 57.145 29.630 11.46 11.46 46.16 2.27
2655 3337 0.535335 GCAGTGGTCCCTCATTACGA 59.465 55.000 0.00 0.00 0.00 3.43
2666 3348 8.746530 TGGTCCCTCATTACGATATAGAATAAC 58.253 37.037 0.00 0.00 0.00 1.89
2667 3349 8.746530 GGTCCCTCATTACGATATAGAATAACA 58.253 37.037 0.00 0.00 0.00 2.41
2730 3416 3.732048 ATCCCACCTTCCGTAACATTT 57.268 42.857 0.00 0.00 0.00 2.32
2743 3429 7.136289 TCCGTAACATTTTAGTTTTAGGCAG 57.864 36.000 0.00 0.00 33.07 4.85
2745 3431 7.877097 TCCGTAACATTTTAGTTTTAGGCAGTA 59.123 33.333 0.00 0.00 33.07 2.74
2746 3432 8.671028 CCGTAACATTTTAGTTTTAGGCAGTAT 58.329 33.333 0.00 0.00 33.07 2.12
2813 3572 1.003545 CAGGACATATTTCTTGCGGCG 60.004 52.381 0.51 0.51 0.00 6.46
2816 3575 2.290641 GGACATATTTCTTGCGGCGAAT 59.709 45.455 12.98 3.15 0.00 3.34
2939 3698 3.600493 GACGCACGTCGAATACTCT 57.400 52.632 7.51 0.00 41.67 3.24
2960 3719 1.043673 ACATCGACCAGCTCCCCTAC 61.044 60.000 0.00 0.00 0.00 3.18
3349 4111 2.031870 TGGTGTGGATATGTCGGAGAG 58.968 52.381 0.00 0.00 36.95 3.20
3415 4181 0.619832 TGCAGGAGAATCTGAGGGCT 60.620 55.000 0.00 0.00 36.93 5.19
3416 4182 1.343377 TGCAGGAGAATCTGAGGGCTA 60.343 52.381 0.00 0.00 36.93 3.93
3417 4183 1.069978 GCAGGAGAATCTGAGGGCTAC 59.930 57.143 0.00 0.00 36.93 3.58
3433 4199 2.510613 GCTACTTGGCTTTGGGTGTAA 58.489 47.619 0.00 0.00 0.00 2.41
3485 4251 4.268359 TGCATGTCTGGTGTGCATATAAA 58.732 39.130 0.00 0.00 43.30 1.40
3509 4275 9.675464 AAACGAATAAATGTAGTGGGAAATAGA 57.325 29.630 0.00 0.00 0.00 1.98
3565 4331 5.582689 AGATGCTTTCTTAAATTTCGGGG 57.417 39.130 0.00 0.00 0.00 5.73
3566 4332 4.402474 AGATGCTTTCTTAAATTTCGGGGG 59.598 41.667 0.00 0.00 0.00 5.40
3570 4336 4.460034 GCTTTCTTAAATTTCGGGGGTGTA 59.540 41.667 0.00 0.00 0.00 2.90
3603 4369 2.147958 TGTTCGTGTATTGTTCTGCCC 58.852 47.619 0.00 0.00 0.00 5.36
3606 4372 0.999406 CGTGTATTGTTCTGCCCGAG 59.001 55.000 0.00 0.00 0.00 4.63
3611 4377 1.523758 ATTGTTCTGCCCGAGTTGTC 58.476 50.000 0.00 0.00 0.00 3.18
3652 4419 9.551734 CTACTCATATGTCCAAATGATCTGAAA 57.448 33.333 1.90 0.00 31.95 2.69
3694 4461 6.105333 GCACCAAATTATCTACCATGCAAAA 58.895 36.000 0.00 0.00 0.00 2.44
3695 4462 6.593382 GCACCAAATTATCTACCATGCAAAAA 59.407 34.615 0.00 0.00 0.00 1.94
3750 4520 2.512515 GACCGGGTGCAGATGAGC 60.513 66.667 3.30 0.00 0.00 4.26
3776 4546 3.077359 GCTCAGAAATGGATATTCGGGG 58.923 50.000 0.00 0.00 32.04 5.73
3803 4573 4.776349 TGTTGTTTCTTAGAGCACCTCAA 58.224 39.130 0.00 0.00 32.06 3.02
3804 4574 4.574828 TGTTGTTTCTTAGAGCACCTCAAC 59.425 41.667 0.00 0.00 34.99 3.18
3805 4575 4.689612 TGTTTCTTAGAGCACCTCAACT 57.310 40.909 0.00 0.00 32.06 3.16
3806 4576 5.036117 TGTTTCTTAGAGCACCTCAACTT 57.964 39.130 0.00 0.00 32.06 2.66
3807 4577 6.169557 TGTTTCTTAGAGCACCTCAACTTA 57.830 37.500 0.00 0.00 32.06 2.24
3808 4578 6.769512 TGTTTCTTAGAGCACCTCAACTTAT 58.230 36.000 0.00 0.00 32.06 1.73
3809 4579 6.650807 TGTTTCTTAGAGCACCTCAACTTATG 59.349 38.462 0.00 0.00 32.06 1.90
3810 4580 5.344743 TCTTAGAGCACCTCAACTTATGG 57.655 43.478 0.00 0.00 32.06 2.74
3820 4590 4.532126 ACCTCAACTTATGGATCACTCACA 59.468 41.667 0.00 0.00 0.00 3.58
3965 4735 1.691195 TATCCGCTCCAAATGCCCGA 61.691 55.000 0.00 0.00 0.00 5.14
3966 4736 2.947938 ATCCGCTCCAAATGCCCGAG 62.948 60.000 0.00 0.00 0.00 4.63
3991 4761 2.350895 CCCGGTCATTGTCTGGCA 59.649 61.111 0.00 0.00 0.00 4.92
3998 4768 3.057315 CGGTCATTGTCTGGCAAGAAAAT 60.057 43.478 0.03 0.03 40.45 1.82
4011 4781 3.420893 CAAGAAAATAGTCACCCAGCCA 58.579 45.455 0.00 0.00 0.00 4.75
4034 4804 3.064416 GGCAAATCCGGCCCAAAA 58.936 55.556 0.00 0.00 45.87 2.44
4037 4807 1.974543 CAAATCCGGCCCAAAAGCT 59.025 52.632 0.00 0.00 0.00 3.74
4038 4808 0.108662 CAAATCCGGCCCAAAAGCTC 60.109 55.000 0.00 0.00 0.00 4.09
4039 4809 0.541764 AAATCCGGCCCAAAAGCTCA 60.542 50.000 0.00 0.00 0.00 4.26
4070 4840 1.743995 CTTCCCCTACCCAAACGCG 60.744 63.158 3.53 3.53 0.00 6.01
4109 4879 1.276989 CCCGCCTTGTAGAACTAACCA 59.723 52.381 0.00 0.00 0.00 3.67
4123 4893 2.002586 CTAACCACAAGAGCCATCACG 58.997 52.381 0.00 0.00 0.00 4.35
4133 4903 2.356913 CCATCACGGACACACGCA 60.357 61.111 0.00 0.00 36.56 5.24
4143 4913 1.398451 GGACACACGCAGAAACAATCG 60.398 52.381 0.00 0.00 0.00 3.34
4147 4917 1.148310 CACGCAGAAACAATCGGTCT 58.852 50.000 0.00 0.00 0.00 3.85
4154 4924 2.305927 AGAAACAATCGGTCTGATGGGT 59.694 45.455 0.98 0.00 37.39 4.51
4162 4932 1.566298 GGTCTGATGGGTGCCTCCTT 61.566 60.000 0.00 0.00 36.25 3.36
4164 4934 1.153289 CTGATGGGTGCCTCCTTCG 60.153 63.158 4.62 0.00 34.72 3.79
4171 4941 1.314730 GGTGCCTCCTTCGTTTTTCA 58.685 50.000 0.00 0.00 0.00 2.69
4182 4952 0.040425 CGTTTTTCAAGGAGGTGCCG 60.040 55.000 0.00 0.00 43.43 5.69
4221 4991 6.145696 GTCCGACTATTTAATCCATACAGTGC 59.854 42.308 0.00 0.00 0.00 4.40
4240 5010 3.429580 GGCCCAACCCTAGCCCAT 61.430 66.667 0.00 0.00 41.00 4.00
4241 5011 2.195956 GCCCAACCCTAGCCCATC 59.804 66.667 0.00 0.00 0.00 3.51
4242 5012 2.927056 CCCAACCCTAGCCCATCC 59.073 66.667 0.00 0.00 0.00 3.51
4243 5013 2.510906 CCAACCCTAGCCCATCCG 59.489 66.667 0.00 0.00 0.00 4.18
4244 5014 2.203209 CAACCCTAGCCCATCCGC 60.203 66.667 0.00 0.00 0.00 5.54
4245 5015 2.690881 AACCCTAGCCCATCCGCA 60.691 61.111 0.00 0.00 0.00 5.69
4246 5016 2.078665 AACCCTAGCCCATCCGCAT 61.079 57.895 0.00 0.00 0.00 4.73
4247 5017 1.645402 AACCCTAGCCCATCCGCATT 61.645 55.000 0.00 0.00 0.00 3.56
4248 5018 1.151450 CCCTAGCCCATCCGCATTT 59.849 57.895 0.00 0.00 0.00 2.32
4249 5019 0.890996 CCCTAGCCCATCCGCATTTC 60.891 60.000 0.00 0.00 0.00 2.17
4250 5020 0.109342 CCTAGCCCATCCGCATTTCT 59.891 55.000 0.00 0.00 0.00 2.52
4251 5021 1.347707 CCTAGCCCATCCGCATTTCTA 59.652 52.381 0.00 0.00 0.00 2.10
4252 5022 2.417719 CTAGCCCATCCGCATTTCTAC 58.582 52.381 0.00 0.00 0.00 2.59
4253 5023 0.179018 AGCCCATCCGCATTTCTACC 60.179 55.000 0.00 0.00 0.00 3.18
4254 5024 1.172812 GCCCATCCGCATTTCTACCC 61.173 60.000 0.00 0.00 0.00 3.69
4255 5025 0.474184 CCCATCCGCATTTCTACCCT 59.526 55.000 0.00 0.00 0.00 4.34
4256 5026 1.543429 CCCATCCGCATTTCTACCCTC 60.543 57.143 0.00 0.00 0.00 4.30
4257 5027 1.417890 CCATCCGCATTTCTACCCTCT 59.582 52.381 0.00 0.00 0.00 3.69
4258 5028 2.158755 CCATCCGCATTTCTACCCTCTT 60.159 50.000 0.00 0.00 0.00 2.85
4259 5029 2.981859 TCCGCATTTCTACCCTCTTC 57.018 50.000 0.00 0.00 0.00 2.87
4260 5030 1.485066 TCCGCATTTCTACCCTCTTCC 59.515 52.381 0.00 0.00 0.00 3.46
4261 5031 1.486726 CCGCATTTCTACCCTCTTCCT 59.513 52.381 0.00 0.00 0.00 3.36
4262 5032 2.483889 CCGCATTTCTACCCTCTTCCTC 60.484 54.545 0.00 0.00 0.00 3.71
4263 5033 2.432510 CGCATTTCTACCCTCTTCCTCT 59.567 50.000 0.00 0.00 0.00 3.69
4264 5034 3.491792 CGCATTTCTACCCTCTTCCTCTC 60.492 52.174 0.00 0.00 0.00 3.20
4265 5035 3.181459 GCATTTCTACCCTCTTCCTCTCC 60.181 52.174 0.00 0.00 0.00 3.71
4266 5036 4.294347 CATTTCTACCCTCTTCCTCTCCT 58.706 47.826 0.00 0.00 0.00 3.69
4267 5037 3.673543 TTCTACCCTCTTCCTCTCCTC 57.326 52.381 0.00 0.00 0.00 3.71
4268 5038 1.854280 TCTACCCTCTTCCTCTCCTCC 59.146 57.143 0.00 0.00 0.00 4.30
4269 5039 0.551879 TACCCTCTTCCTCTCCTCCG 59.448 60.000 0.00 0.00 0.00 4.63
4270 5040 2.131067 CCCTCTTCCTCTCCTCCGC 61.131 68.421 0.00 0.00 0.00 5.54
4271 5041 2.485795 CCTCTTCCTCTCCTCCGCG 61.486 68.421 0.00 0.00 0.00 6.46
4272 5042 3.132481 CTCTTCCTCTCCTCCGCGC 62.132 68.421 0.00 0.00 0.00 6.86
4273 5043 3.144193 CTTCCTCTCCTCCGCGCT 61.144 66.667 5.56 0.00 0.00 5.92
4274 5044 3.423162 CTTCCTCTCCTCCGCGCTG 62.423 68.421 5.56 0.00 0.00 5.18
4282 5052 3.869272 CTCCGCGCTGCCACATTC 61.869 66.667 5.56 0.00 0.00 2.67
4283 5053 4.695993 TCCGCGCTGCCACATTCA 62.696 61.111 5.56 0.00 0.00 2.57
4284 5054 3.736100 CCGCGCTGCCACATTCAA 61.736 61.111 5.56 0.00 0.00 2.69
4285 5055 2.486504 CGCGCTGCCACATTCAAT 59.513 55.556 5.56 0.00 0.00 2.57
4286 5056 1.584483 CGCGCTGCCACATTCAATC 60.584 57.895 5.56 0.00 0.00 2.67
4287 5057 1.805254 GCGCTGCCACATTCAATCT 59.195 52.632 0.00 0.00 0.00 2.40
4288 5058 1.016627 GCGCTGCCACATTCAATCTA 58.983 50.000 0.00 0.00 0.00 1.98
4289 5059 1.003116 GCGCTGCCACATTCAATCTAG 60.003 52.381 0.00 0.00 0.00 2.43
4290 5060 2.283298 CGCTGCCACATTCAATCTAGT 58.717 47.619 0.00 0.00 0.00 2.57
4291 5061 2.286294 CGCTGCCACATTCAATCTAGTC 59.714 50.000 0.00 0.00 0.00 2.59
4292 5062 2.286294 GCTGCCACATTCAATCTAGTCG 59.714 50.000 0.00 0.00 0.00 4.18
4293 5063 2.279741 TGCCACATTCAATCTAGTCGC 58.720 47.619 0.00 0.00 0.00 5.19
4294 5064 1.599542 GCCACATTCAATCTAGTCGCC 59.400 52.381 0.00 0.00 0.00 5.54
4295 5065 1.860950 CCACATTCAATCTAGTCGCCG 59.139 52.381 0.00 0.00 0.00 6.46
4296 5066 2.540515 CACATTCAATCTAGTCGCCGT 58.459 47.619 0.00 0.00 0.00 5.68
4297 5067 2.535984 CACATTCAATCTAGTCGCCGTC 59.464 50.000 0.00 0.00 0.00 4.79
4298 5068 2.165641 ACATTCAATCTAGTCGCCGTCA 59.834 45.455 0.00 0.00 0.00 4.35
4299 5069 2.561733 TTCAATCTAGTCGCCGTCAG 57.438 50.000 0.00 0.00 0.00 3.51
4300 5070 0.100682 TCAATCTAGTCGCCGTCAGC 59.899 55.000 0.00 0.00 38.52 4.26
4301 5071 0.101399 CAATCTAGTCGCCGTCAGCT 59.899 55.000 0.00 0.00 40.39 4.24
4302 5072 0.101399 AATCTAGTCGCCGTCAGCTG 59.899 55.000 7.63 7.63 40.39 4.24
4303 5073 2.343163 ATCTAGTCGCCGTCAGCTGC 62.343 60.000 9.47 3.23 40.39 5.25
4304 5074 3.057547 CTAGTCGCCGTCAGCTGCT 62.058 63.158 9.47 0.00 40.39 4.24
4305 5075 2.549611 CTAGTCGCCGTCAGCTGCTT 62.550 60.000 9.47 0.00 40.39 3.91
4306 5076 2.819117 TAGTCGCCGTCAGCTGCTTG 62.819 60.000 9.47 0.35 40.39 4.01
4310 5080 2.749044 CCGTCAGCTGCTTGCCAT 60.749 61.111 9.47 0.00 44.23 4.40
4311 5081 1.450134 CCGTCAGCTGCTTGCCATA 60.450 57.895 9.47 0.00 44.23 2.74
4312 5082 1.026182 CCGTCAGCTGCTTGCCATAA 61.026 55.000 9.47 0.00 44.23 1.90
4313 5083 0.097674 CGTCAGCTGCTTGCCATAAC 59.902 55.000 9.47 0.00 44.23 1.89
4314 5084 0.453390 GTCAGCTGCTTGCCATAACC 59.547 55.000 9.47 0.00 44.23 2.85
4315 5085 0.329261 TCAGCTGCTTGCCATAACCT 59.671 50.000 9.47 0.00 44.23 3.50
4316 5086 0.454600 CAGCTGCTTGCCATAACCTG 59.545 55.000 0.00 0.00 44.23 4.00
4331 5101 4.835927 CTGGCGTAGGATCACCAC 57.164 61.111 0.00 0.00 38.94 4.16
4332 5102 1.144057 CTGGCGTAGGATCACCACC 59.856 63.158 0.00 0.00 38.94 4.61
4333 5103 1.305802 TGGCGTAGGATCACCACCT 60.306 57.895 0.00 0.00 41.05 4.00
4334 5104 0.032912 TGGCGTAGGATCACCACCTA 60.033 55.000 0.00 0.00 38.76 3.08
4335 5105 1.117150 GGCGTAGGATCACCACCTAA 58.883 55.000 0.00 0.00 40.96 2.69
4336 5106 1.692519 GGCGTAGGATCACCACCTAAT 59.307 52.381 0.00 0.00 40.96 1.73
4337 5107 2.288886 GGCGTAGGATCACCACCTAATC 60.289 54.545 0.00 0.00 40.96 1.75
4338 5108 2.288886 GCGTAGGATCACCACCTAATCC 60.289 54.545 0.00 0.00 40.96 3.01
4339 5109 2.963101 CGTAGGATCACCACCTAATCCA 59.037 50.000 0.00 0.00 41.23 3.41
4340 5110 3.578716 CGTAGGATCACCACCTAATCCAT 59.421 47.826 0.00 0.00 41.23 3.41
4341 5111 4.561530 CGTAGGATCACCACCTAATCCATG 60.562 50.000 0.00 0.00 41.23 3.66
4342 5112 2.107204 AGGATCACCACCTAATCCATGC 59.893 50.000 0.00 0.00 41.23 4.06
4343 5113 2.107204 GGATCACCACCTAATCCATGCT 59.893 50.000 0.00 0.00 39.05 3.79
4344 5114 3.406764 GATCACCACCTAATCCATGCTC 58.593 50.000 0.00 0.00 0.00 4.26
4345 5115 2.195727 TCACCACCTAATCCATGCTCA 58.804 47.619 0.00 0.00 0.00 4.26
4346 5116 2.092968 TCACCACCTAATCCATGCTCAC 60.093 50.000 0.00 0.00 0.00 3.51
4347 5117 2.092753 CACCACCTAATCCATGCTCACT 60.093 50.000 0.00 0.00 0.00 3.41
4348 5118 2.171448 ACCACCTAATCCATGCTCACTC 59.829 50.000 0.00 0.00 0.00 3.51
4349 5119 2.486191 CCACCTAATCCATGCTCACTCC 60.486 54.545 0.00 0.00 0.00 3.85
4350 5120 1.414181 ACCTAATCCATGCTCACTCCG 59.586 52.381 0.00 0.00 0.00 4.63
4351 5121 1.270518 CCTAATCCATGCTCACTCCGG 60.271 57.143 0.00 0.00 0.00 5.14
4352 5122 1.688735 CTAATCCATGCTCACTCCGGA 59.311 52.381 2.93 2.93 0.00 5.14
4353 5123 0.467384 AATCCATGCTCACTCCGGAG 59.533 55.000 30.11 30.11 37.97 4.63
4372 5142 4.666253 GGGGGTTGCAGCTGCTGA 62.666 66.667 36.61 23.49 42.66 4.26
4373 5143 2.598394 GGGGTTGCAGCTGCTGAA 60.598 61.111 36.61 22.53 42.66 3.02
4374 5144 2.633509 GGGGTTGCAGCTGCTGAAG 61.634 63.158 36.61 7.51 42.66 3.02
4375 5145 2.633509 GGGTTGCAGCTGCTGAAGG 61.634 63.158 36.61 7.11 42.66 3.46
4376 5146 1.601759 GGTTGCAGCTGCTGAAGGA 60.602 57.895 36.61 15.23 42.66 3.36
4377 5147 0.964358 GGTTGCAGCTGCTGAAGGAT 60.964 55.000 36.61 0.00 42.66 3.24
4378 5148 1.679944 GGTTGCAGCTGCTGAAGGATA 60.680 52.381 36.61 13.65 42.66 2.59
4379 5149 2.295885 GTTGCAGCTGCTGAAGGATAT 58.704 47.619 36.61 0.00 42.66 1.63
4380 5150 2.251409 TGCAGCTGCTGAAGGATATC 57.749 50.000 36.61 12.67 42.66 1.63
4381 5151 1.487558 TGCAGCTGCTGAAGGATATCA 59.512 47.619 36.61 15.10 42.66 2.15
4389 5159 3.874400 CTGAAGGATATCAGCGCAAAG 57.126 47.619 11.47 0.00 40.31 2.77
4401 5171 3.880846 GCAAAGCCCGGATCGCAG 61.881 66.667 0.73 0.00 0.00 5.18
4402 5172 3.880846 CAAAGCCCGGATCGCAGC 61.881 66.667 0.73 0.00 0.00 5.25
4408 5178 4.923942 CCGGATCGCAGCCAGCAT 62.924 66.667 0.00 0.00 46.13 3.79
4409 5179 2.029518 CGGATCGCAGCCAGCATA 59.970 61.111 0.00 0.00 46.13 3.14
4410 5180 2.313172 CGGATCGCAGCCAGCATAC 61.313 63.158 0.00 0.00 46.13 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.789521 TCCACTAATGACGTCAGATTTTGA 58.210 37.500 24.41 13.03 0.00 2.69
32 33 5.639506 ACTCCACTAATGACGTCAGATTTTG 59.360 40.000 24.41 15.75 0.00 2.44
33 34 5.794894 ACTCCACTAATGACGTCAGATTTT 58.205 37.500 24.41 15.18 0.00 1.82
34 35 5.186021 AGACTCCACTAATGACGTCAGATTT 59.814 40.000 24.41 15.54 31.23 2.17
35 36 4.707448 AGACTCCACTAATGACGTCAGATT 59.293 41.667 24.41 16.27 31.23 2.40
36 37 4.274147 AGACTCCACTAATGACGTCAGAT 58.726 43.478 24.41 17.04 31.23 2.90
37 38 3.687125 AGACTCCACTAATGACGTCAGA 58.313 45.455 24.41 13.03 31.23 3.27
38 39 5.562506 TTAGACTCCACTAATGACGTCAG 57.437 43.478 24.41 12.88 31.23 3.51
39 40 5.970317 TTTAGACTCCACTAATGACGTCA 57.030 39.130 22.48 22.48 33.29 4.35
61 62 9.762381 TCCACCCTATGTAATCTTTACAATTTT 57.238 29.630 4.37 0.00 0.00 1.82
62 63 9.936329 ATCCACCCTATGTAATCTTTACAATTT 57.064 29.630 4.37 0.00 0.00 1.82
63 64 9.354673 CATCCACCCTATGTAATCTTTACAATT 57.645 33.333 4.37 0.00 0.00 2.32
64 65 7.944554 CCATCCACCCTATGTAATCTTTACAAT 59.055 37.037 4.37 0.00 0.00 2.71
65 66 7.287061 CCATCCACCCTATGTAATCTTTACAA 58.713 38.462 4.37 0.00 0.00 2.41
66 67 6.690460 GCCATCCACCCTATGTAATCTTTACA 60.690 42.308 2.84 2.84 0.00 2.41
67 68 5.705905 GCCATCCACCCTATGTAATCTTTAC 59.294 44.000 0.00 0.00 0.00 2.01
68 69 5.371176 TGCCATCCACCCTATGTAATCTTTA 59.629 40.000 0.00 0.00 0.00 1.85
69 70 4.167892 TGCCATCCACCCTATGTAATCTTT 59.832 41.667 0.00 0.00 0.00 2.52
70 71 3.721575 TGCCATCCACCCTATGTAATCTT 59.278 43.478 0.00 0.00 0.00 2.40
71 72 3.326521 TGCCATCCACCCTATGTAATCT 58.673 45.455 0.00 0.00 0.00 2.40
72 73 3.788227 TGCCATCCACCCTATGTAATC 57.212 47.619 0.00 0.00 0.00 1.75
73 74 3.463329 AGTTGCCATCCACCCTATGTAAT 59.537 43.478 0.00 0.00 0.00 1.89
74 75 2.849943 AGTTGCCATCCACCCTATGTAA 59.150 45.455 0.00 0.00 0.00 2.41
75 76 2.487775 AGTTGCCATCCACCCTATGTA 58.512 47.619 0.00 0.00 0.00 2.29
76 77 1.298953 AGTTGCCATCCACCCTATGT 58.701 50.000 0.00 0.00 0.00 2.29
77 78 2.439507 AGTAGTTGCCATCCACCCTATG 59.560 50.000 0.00 0.00 0.00 2.23
78 79 2.776665 AGTAGTTGCCATCCACCCTAT 58.223 47.619 0.00 0.00 0.00 2.57
79 80 2.263895 AGTAGTTGCCATCCACCCTA 57.736 50.000 0.00 0.00 0.00 3.53
80 81 1.838077 GTAGTAGTTGCCATCCACCCT 59.162 52.381 0.00 0.00 0.00 4.34
81 82 1.472728 CGTAGTAGTTGCCATCCACCC 60.473 57.143 0.00 0.00 0.00 4.61
82 83 1.479323 TCGTAGTAGTTGCCATCCACC 59.521 52.381 0.00 0.00 0.00 4.61
83 84 2.537401 GTCGTAGTAGTTGCCATCCAC 58.463 52.381 0.00 0.00 0.00 4.02
84 85 1.479323 GGTCGTAGTAGTTGCCATCCA 59.521 52.381 0.00 0.00 0.00 3.41
85 86 1.479323 TGGTCGTAGTAGTTGCCATCC 59.521 52.381 0.00 0.00 0.00 3.51
86 87 2.537401 GTGGTCGTAGTAGTTGCCATC 58.463 52.381 0.00 0.00 0.00 3.51
87 88 1.206371 GGTGGTCGTAGTAGTTGCCAT 59.794 52.381 0.00 0.00 0.00 4.40
88 89 0.604578 GGTGGTCGTAGTAGTTGCCA 59.395 55.000 0.00 0.00 0.00 4.92
89 90 0.457337 CGGTGGTCGTAGTAGTTGCC 60.457 60.000 0.00 0.00 0.00 4.52
90 91 0.457337 CCGGTGGTCGTAGTAGTTGC 60.457 60.000 0.00 0.00 37.11 4.17
91 92 1.167851 TCCGGTGGTCGTAGTAGTTG 58.832 55.000 0.00 0.00 37.11 3.16
92 93 1.909700 TTCCGGTGGTCGTAGTAGTT 58.090 50.000 0.00 0.00 37.11 2.24
93 94 1.909700 TTTCCGGTGGTCGTAGTAGT 58.090 50.000 0.00 0.00 37.11 2.73
94 95 2.416431 CCTTTTCCGGTGGTCGTAGTAG 60.416 54.545 0.00 0.00 37.11 2.57
95 96 1.545582 CCTTTTCCGGTGGTCGTAGTA 59.454 52.381 0.00 0.00 37.11 1.82
96 97 0.319405 CCTTTTCCGGTGGTCGTAGT 59.681 55.000 0.00 0.00 37.11 2.73
97 98 1.017701 GCCTTTTCCGGTGGTCGTAG 61.018 60.000 0.00 0.00 37.11 3.51
98 99 1.004679 GCCTTTTCCGGTGGTCGTA 60.005 57.895 0.00 0.00 37.11 3.43
99 100 2.281276 GCCTTTTCCGGTGGTCGT 60.281 61.111 0.00 0.00 37.11 4.34
100 101 3.419759 CGCCTTTTCCGGTGGTCG 61.420 66.667 0.00 4.95 38.88 4.79
101 102 2.031465 TCGCCTTTTCCGGTGGTC 59.969 61.111 0.00 0.00 35.28 4.02
102 103 2.281276 GTCGCCTTTTCCGGTGGT 60.281 61.111 0.00 0.00 35.28 4.16
103 104 2.281208 TGTCGCCTTTTCCGGTGG 60.281 61.111 0.00 0.98 35.28 4.61
104 105 2.966309 GCTGTCGCCTTTTCCGGTG 61.966 63.158 0.00 0.00 35.88 4.94
105 106 2.668550 GCTGTCGCCTTTTCCGGT 60.669 61.111 0.00 0.00 0.00 5.28
106 107 2.258013 TTGCTGTCGCCTTTTCCGG 61.258 57.895 0.00 0.00 34.43 5.14
107 108 1.082104 GTTGCTGTCGCCTTTTCCG 60.082 57.895 0.00 0.00 34.43 4.30
108 109 1.082104 CGTTGCTGTCGCCTTTTCC 60.082 57.895 0.00 0.00 34.43 3.13
109 110 1.082104 CCGTTGCTGTCGCCTTTTC 60.082 57.895 0.00 0.00 34.43 2.29
110 111 1.822186 ACCGTTGCTGTCGCCTTTT 60.822 52.632 0.00 0.00 34.43 2.27
111 112 2.203153 ACCGTTGCTGTCGCCTTT 60.203 55.556 0.00 0.00 34.43 3.11
112 113 2.731691 ATCACCGTTGCTGTCGCCTT 62.732 55.000 0.00 0.00 34.43 4.35
113 114 3.240134 ATCACCGTTGCTGTCGCCT 62.240 57.895 0.00 0.00 34.43 5.52
135 136 1.180029 GACATGGCTCATTGTTGGCT 58.820 50.000 0.00 0.00 0.00 4.75
182 183 2.361119 TGGTGCTACCATACGTGATCTC 59.639 50.000 0.00 0.00 44.79 2.75
183 184 2.384828 TGGTGCTACCATACGTGATCT 58.615 47.619 0.00 0.00 44.79 2.75
184 185 2.882927 TGGTGCTACCATACGTGATC 57.117 50.000 0.00 0.00 44.79 2.92
193 194 7.792594 CATGTGTTAATCATGTGGTGCTACCA 61.793 42.308 12.45 4.16 38.80 3.25
196 197 5.495640 TCATGTGTTAATCATGTGGTGCTA 58.504 37.500 17.14 1.62 42.03 3.49
290 291 6.239543 CCATCAGAGTGCCTTGTATAGATCTT 60.240 42.308 0.00 0.00 0.00 2.40
297 298 3.521126 AGAACCATCAGAGTGCCTTGTAT 59.479 43.478 0.00 0.00 0.00 2.29
299 300 1.701847 AGAACCATCAGAGTGCCTTGT 59.298 47.619 0.00 0.00 0.00 3.16
309 310 5.222631 GCCTGTTAAAACAAGAACCATCAG 58.777 41.667 0.00 0.00 38.66 2.90
456 485 3.165875 AGGATGTGAACGGAGAGAGAAA 58.834 45.455 0.00 0.00 0.00 2.52
482 511 7.234355 AGAGAATAACTGTTTTCCATGAAGGT 58.766 34.615 0.00 0.00 39.02 3.50
486 516 7.939039 ACAAGAGAGAATAACTGTTTTCCATGA 59.061 33.333 0.00 0.00 0.00 3.07
509 541 2.227626 CTGTGCGAGAGAGAAGAGACAA 59.772 50.000 0.00 0.00 0.00 3.18
551 583 3.053320 TGAGCCAGAGAGAGGACTAATGA 60.053 47.826 0.00 0.00 0.00 2.57
914 973 5.239525 CCATACTGAGTAAAGGCTAAATGGC 59.760 44.000 0.00 0.00 42.15 4.40
915 974 5.239525 GCCATACTGAGTAAAGGCTAAATGG 59.760 44.000 23.83 14.00 38.96 3.16
916 975 6.058183 AGCCATACTGAGTAAAGGCTAAATG 58.942 40.000 29.12 9.08 45.20 2.32
917 976 6.100424 AGAGCCATACTGAGTAAAGGCTAAAT 59.900 38.462 29.79 20.35 46.18 1.40
918 977 5.425539 AGAGCCATACTGAGTAAAGGCTAAA 59.574 40.000 29.79 0.00 46.18 1.85
919 978 4.962995 AGAGCCATACTGAGTAAAGGCTAA 59.037 41.667 29.79 0.00 46.18 3.09
920 979 4.547671 AGAGCCATACTGAGTAAAGGCTA 58.452 43.478 29.79 0.00 46.18 3.93
922 981 3.386402 AGAGAGCCATACTGAGTAAAGGC 59.614 47.826 23.74 23.74 40.85 4.35
923 982 6.909550 ATAGAGAGCCATACTGAGTAAAGG 57.090 41.667 9.37 9.37 0.00 3.11
972 1031 7.276218 TCGGACTAATAGTTTATGTTGTTTCCG 59.724 37.037 0.00 0.00 0.00 4.30
1020 1094 3.751621 CATGAACAAAAGCGAGGACATC 58.248 45.455 0.00 0.00 0.00 3.06
1033 1107 2.909006 AGGAAGAGAGGAGCATGAACAA 59.091 45.455 0.00 0.00 0.00 2.83
1260 1334 1.367840 GTTGTGCGTCTGGAGGACT 59.632 57.895 0.00 0.00 42.44 3.85
1802 1910 4.778415 CGTCCAGCAGGTCGTCCG 62.778 72.222 6.62 0.00 40.78 4.79
1860 1968 0.320160 GGTTAACCAAGCCGTCGTCT 60.320 55.000 20.12 0.00 35.64 4.18
1933 2043 1.594862 CTCACTTGGGCGATTCGATTC 59.405 52.381 10.88 0.00 0.00 2.52
2140 2439 9.344772 TCCAACGTGCCAAAAGTAATAATATAT 57.655 29.630 0.00 0.00 0.00 0.86
2141 2440 8.614346 GTCCAACGTGCCAAAAGTAATAATATA 58.386 33.333 0.00 0.00 0.00 0.86
2147 2446 2.952978 TGTCCAACGTGCCAAAAGTAAT 59.047 40.909 0.00 0.00 0.00 1.89
2151 2450 2.507339 AATGTCCAACGTGCCAAAAG 57.493 45.000 0.00 0.00 0.00 2.27
2152 2451 2.969628 AAATGTCCAACGTGCCAAAA 57.030 40.000 0.00 0.00 0.00 2.44
2234 2534 9.905713 ATTAAGACCAGAAGTGCTTATTGATAA 57.094 29.630 0.00 0.00 0.00 1.75
2322 2623 9.129532 TCTAGACTATAACTAAGTTACTTGGGC 57.870 37.037 12.84 0.00 30.49 5.36
2629 3311 3.127533 GGGACCACTGCGTGATGC 61.128 66.667 9.75 0.00 46.70 3.91
2666 3348 9.985730 AAAAATATGTAATGAGTGGCCATTATG 57.014 29.630 9.72 0.00 40.06 1.90
2697 3382 7.283807 ACGGAAGGTGGGATTTTATTATGTTAC 59.716 37.037 0.00 0.00 0.00 2.50
2698 3383 7.348033 ACGGAAGGTGGGATTTTATTATGTTA 58.652 34.615 0.00 0.00 0.00 2.41
2715 3401 7.308770 GCCTAAAACTAAAATGTTACGGAAGGT 60.309 37.037 0.00 0.00 0.00 3.50
2813 3572 2.230508 TGTACCCGAGACAGTGTCATTC 59.769 50.000 24.73 13.43 34.60 2.67
2816 3575 1.694844 TTGTACCCGAGACAGTGTCA 58.305 50.000 24.73 0.02 34.60 3.58
2939 3698 2.359169 GGGGAGCTGGTCGATGTCA 61.359 63.158 0.00 0.00 0.00 3.58
2960 3719 0.671781 CCTTGACGACTGCTTGGAGG 60.672 60.000 0.00 0.00 0.00 4.30
3083 3842 4.178169 TGGACCGCCCACACGTTT 62.178 61.111 0.00 0.00 40.82 3.60
3325 4087 2.569853 TCCGACATATCCACACCACTTT 59.430 45.455 0.00 0.00 0.00 2.66
3349 4111 1.823899 GCCATCGTGATCCCAACCC 60.824 63.158 0.00 0.00 0.00 4.11
3415 4181 4.896482 ACAAATTACACCCAAAGCCAAGTA 59.104 37.500 0.00 0.00 0.00 2.24
3416 4182 3.709141 ACAAATTACACCCAAAGCCAAGT 59.291 39.130 0.00 0.00 0.00 3.16
3417 4183 4.335400 ACAAATTACACCCAAAGCCAAG 57.665 40.909 0.00 0.00 0.00 3.61
3433 4199 4.993029 TTCCACGGAAGAAACAACAAAT 57.007 36.364 0.00 0.00 0.00 2.32
3576 4342 7.075741 GCAGAACAATACACGAACAGTAAATT 58.924 34.615 0.00 0.00 0.00 1.82
3637 4404 6.094719 CGCTTCAAATTTCAGATCATTTGGA 58.905 36.000 13.37 6.69 39.76 3.53
3652 4419 2.566952 GCATAAGGTGCGCTTCAAAT 57.433 45.000 9.73 0.00 45.23 2.32
3729 4499 1.746615 CATCTGCACCCGGTCAAGG 60.747 63.158 0.00 0.00 0.00 3.61
3750 4520 3.803186 ATATCCATTTCTGAGCCCAGG 57.197 47.619 0.00 0.00 40.76 4.45
3760 4530 6.405278 ACAATTTCCCCGAATATCCATTTC 57.595 37.500 0.00 0.00 0.00 2.17
3776 4546 6.739112 AGGTGCTCTAAGAAACAACAATTTC 58.261 36.000 0.00 0.00 38.62 2.17
3803 4573 2.735444 CGCGTGTGAGTGATCCATAAGT 60.735 50.000 0.00 0.00 0.00 2.24
3804 4574 1.854743 CGCGTGTGAGTGATCCATAAG 59.145 52.381 0.00 0.00 0.00 1.73
3805 4575 1.921243 CGCGTGTGAGTGATCCATAA 58.079 50.000 0.00 0.00 0.00 1.90
3806 4576 0.527600 GCGCGTGTGAGTGATCCATA 60.528 55.000 8.43 0.00 0.00 2.74
3807 4577 1.811266 GCGCGTGTGAGTGATCCAT 60.811 57.895 8.43 0.00 0.00 3.41
3808 4578 2.432456 GCGCGTGTGAGTGATCCA 60.432 61.111 8.43 0.00 0.00 3.41
3809 4579 1.738099 AAGCGCGTGTGAGTGATCC 60.738 57.895 8.43 0.00 0.00 3.36
3810 4580 1.284982 ACAAGCGCGTGTGAGTGATC 61.285 55.000 27.96 0.00 0.00 2.92
3928 4698 4.019860 CGGATATGAGGGATCCAATTGTCT 60.020 45.833 15.23 0.00 42.75 3.41
3976 4746 1.522668 TTCTTGCCAGACAATGACCG 58.477 50.000 0.00 0.00 37.72 4.79
3982 4752 4.518970 GGTGACTATTTTCTTGCCAGACAA 59.481 41.667 0.00 0.00 36.62 3.18
3991 4761 3.330701 TCTGGCTGGGTGACTATTTTCTT 59.669 43.478 0.00 0.00 0.00 2.52
3998 4768 0.904865 CAGGTCTGGCTGGGTGACTA 60.905 60.000 0.00 0.00 0.00 2.59
4011 4781 2.044946 GCCGGATTTGCCAGGTCT 60.045 61.111 5.05 0.00 35.94 3.85
4037 4807 3.240134 GAAGTGCCGGTCAGCCTGA 62.240 63.158 1.90 0.00 0.00 3.86
4038 4808 2.743928 GAAGTGCCGGTCAGCCTG 60.744 66.667 1.90 0.00 0.00 4.85
4039 4809 4.021925 GGAAGTGCCGGTCAGCCT 62.022 66.667 1.90 0.00 0.00 4.58
4070 4840 1.729131 CACATTTGGGTGCGTTCGC 60.729 57.895 10.34 10.34 31.10 4.70
4080 4850 1.247419 TACAAGGCGGGCACATTTGG 61.247 55.000 3.78 0.00 0.00 3.28
4083 4853 0.037590 TTCTACAAGGCGGGCACATT 59.962 50.000 3.78 0.00 0.00 2.71
4109 4879 0.320771 GTGTCCGTGATGGCTCTTGT 60.321 55.000 0.00 0.00 37.80 3.16
4123 4893 1.398451 CGATTGTTTCTGCGTGTGTCC 60.398 52.381 0.00 0.00 0.00 4.02
4133 4903 2.305927 ACCCATCAGACCGATTGTTTCT 59.694 45.455 0.00 0.00 29.21 2.52
4143 4913 1.566298 AAGGAGGCACCCATCAGACC 61.566 60.000 0.00 0.00 40.05 3.85
4147 4917 1.488705 AACGAAGGAGGCACCCATCA 61.489 55.000 0.00 0.00 40.05 3.07
4154 4924 1.953686 CCTTGAAAAACGAAGGAGGCA 59.046 47.619 0.00 0.00 41.26 4.75
4162 4932 1.314730 GGCACCTCCTTGAAAAACGA 58.685 50.000 0.00 0.00 0.00 3.85
4164 4934 0.318699 GCGGCACCTCCTTGAAAAAC 60.319 55.000 0.00 0.00 0.00 2.43
4171 4941 4.351054 CTTGGGCGGCACCTCCTT 62.351 66.667 12.47 0.00 39.10 3.36
4182 4952 2.035783 GGACTTGGTCCCTTGGGC 59.964 66.667 5.48 0.00 46.19 5.36
4199 4969 5.118664 CGGCACTGTATGGATTAAATAGTCG 59.881 44.000 0.00 0.00 0.00 4.18
4200 4970 5.408604 CCGGCACTGTATGGATTAAATAGTC 59.591 44.000 0.00 0.00 0.00 2.59
4237 5007 1.417890 AGAGGGTAGAAATGCGGATGG 59.582 52.381 0.00 0.00 0.00 3.51
4238 5008 2.918712 AGAGGGTAGAAATGCGGATG 57.081 50.000 0.00 0.00 0.00 3.51
4239 5009 2.104963 GGAAGAGGGTAGAAATGCGGAT 59.895 50.000 0.00 0.00 0.00 4.18
4240 5010 1.485066 GGAAGAGGGTAGAAATGCGGA 59.515 52.381 0.00 0.00 0.00 5.54
4241 5011 1.486726 AGGAAGAGGGTAGAAATGCGG 59.513 52.381 0.00 0.00 0.00 5.69
4242 5012 2.432510 AGAGGAAGAGGGTAGAAATGCG 59.567 50.000 0.00 0.00 0.00 4.73
4243 5013 3.181459 GGAGAGGAAGAGGGTAGAAATGC 60.181 52.174 0.00 0.00 0.00 3.56
4244 5014 4.294347 AGGAGAGGAAGAGGGTAGAAATG 58.706 47.826 0.00 0.00 0.00 2.32
4245 5015 4.552674 GAGGAGAGGAAGAGGGTAGAAAT 58.447 47.826 0.00 0.00 0.00 2.17
4246 5016 3.309994 GGAGGAGAGGAAGAGGGTAGAAA 60.310 52.174 0.00 0.00 0.00 2.52
4247 5017 2.245287 GGAGGAGAGGAAGAGGGTAGAA 59.755 54.545 0.00 0.00 0.00 2.10
4248 5018 1.854280 GGAGGAGAGGAAGAGGGTAGA 59.146 57.143 0.00 0.00 0.00 2.59
4249 5019 1.477923 CGGAGGAGAGGAAGAGGGTAG 60.478 61.905 0.00 0.00 0.00 3.18
4250 5020 0.551879 CGGAGGAGAGGAAGAGGGTA 59.448 60.000 0.00 0.00 0.00 3.69
4251 5021 1.308326 CGGAGGAGAGGAAGAGGGT 59.692 63.158 0.00 0.00 0.00 4.34
4252 5022 2.131067 GCGGAGGAGAGGAAGAGGG 61.131 68.421 0.00 0.00 0.00 4.30
4253 5023 2.485795 CGCGGAGGAGAGGAAGAGG 61.486 68.421 0.00 0.00 0.00 3.69
4254 5024 3.115556 CGCGGAGGAGAGGAAGAG 58.884 66.667 0.00 0.00 0.00 2.85
4255 5025 3.141488 GCGCGGAGGAGAGGAAGA 61.141 66.667 8.83 0.00 0.00 2.87
4256 5026 3.144193 AGCGCGGAGGAGAGGAAG 61.144 66.667 8.83 0.00 0.00 3.46
4257 5027 3.452786 CAGCGCGGAGGAGAGGAA 61.453 66.667 8.83 0.00 0.00 3.36
4265 5035 3.869272 GAATGTGGCAGCGCGGAG 61.869 66.667 13.03 1.90 0.00 4.63
4266 5036 4.695993 TGAATGTGGCAGCGCGGA 62.696 61.111 13.03 0.00 0.00 5.54
4267 5037 2.924922 GATTGAATGTGGCAGCGCGG 62.925 60.000 8.83 2.11 0.00 6.46
4268 5038 1.584483 GATTGAATGTGGCAGCGCG 60.584 57.895 0.00 0.00 0.00 6.86
4269 5039 1.003116 CTAGATTGAATGTGGCAGCGC 60.003 52.381 0.00 0.00 0.00 5.92
4270 5040 2.283298 ACTAGATTGAATGTGGCAGCG 58.717 47.619 0.00 0.00 0.00 5.18
4271 5041 2.286294 CGACTAGATTGAATGTGGCAGC 59.714 50.000 0.00 0.00 0.00 5.25
4272 5042 2.286294 GCGACTAGATTGAATGTGGCAG 59.714 50.000 0.00 0.00 34.96 4.85
4273 5043 2.279741 GCGACTAGATTGAATGTGGCA 58.720 47.619 0.00 0.00 34.96 4.92
4274 5044 1.599542 GGCGACTAGATTGAATGTGGC 59.400 52.381 0.00 0.00 34.28 5.01
4275 5045 1.860950 CGGCGACTAGATTGAATGTGG 59.139 52.381 0.00 0.00 0.00 4.17
4276 5046 2.535984 GACGGCGACTAGATTGAATGTG 59.464 50.000 16.62 0.00 0.00 3.21
4277 5047 2.165641 TGACGGCGACTAGATTGAATGT 59.834 45.455 16.62 0.00 0.00 2.71
4278 5048 2.791560 CTGACGGCGACTAGATTGAATG 59.208 50.000 16.62 0.00 0.00 2.67
4279 5049 2.799917 GCTGACGGCGACTAGATTGAAT 60.800 50.000 16.62 0.00 0.00 2.57
4280 5050 1.469251 GCTGACGGCGACTAGATTGAA 60.469 52.381 16.62 0.00 0.00 2.69
4281 5051 0.100682 GCTGACGGCGACTAGATTGA 59.899 55.000 16.62 0.00 0.00 2.57
4282 5052 2.582959 GCTGACGGCGACTAGATTG 58.417 57.895 16.62 0.00 0.00 2.67
4293 5063 1.026182 TTATGGCAAGCAGCTGACGG 61.026 55.000 20.43 6.22 44.79 4.79
4294 5064 0.097674 GTTATGGCAAGCAGCTGACG 59.902 55.000 20.43 5.42 44.79 4.35
4295 5065 0.453390 GGTTATGGCAAGCAGCTGAC 59.547 55.000 20.43 9.11 44.79 3.51
4296 5066 0.329261 AGGTTATGGCAAGCAGCTGA 59.671 50.000 20.43 0.00 44.79 4.26
4297 5067 0.454600 CAGGTTATGGCAAGCAGCTG 59.545 55.000 10.11 10.11 44.79 4.24
4298 5068 0.682209 CCAGGTTATGGCAAGCAGCT 60.682 55.000 0.00 0.00 43.83 4.24
4299 5069 1.811860 CCAGGTTATGGCAAGCAGC 59.188 57.895 0.00 0.00 43.83 5.25
4308 5078 2.548067 GGTGATCCTACGCCAGGTTATG 60.548 54.545 3.75 0.00 45.71 1.90
4309 5079 1.692519 GGTGATCCTACGCCAGGTTAT 59.307 52.381 3.75 0.00 45.71 1.89
4310 5080 1.117150 GGTGATCCTACGCCAGGTTA 58.883 55.000 3.75 0.00 45.71 2.85
4311 5081 0.907704 TGGTGATCCTACGCCAGGTT 60.908 55.000 3.75 0.00 45.71 3.50
4312 5082 1.305802 TGGTGATCCTACGCCAGGT 60.306 57.895 3.75 0.00 45.71 4.00
4313 5083 3.628989 TGGTGATCCTACGCCAGG 58.371 61.111 0.00 0.00 44.09 4.45
4315 5085 0.032912 TAGGTGGTGATCCTACGCCA 60.033 55.000 11.88 0.00 46.28 5.69
4316 5086 1.117150 TTAGGTGGTGATCCTACGCC 58.883 55.000 3.54 3.54 37.29 5.68
4317 5087 2.288886 GGATTAGGTGGTGATCCTACGC 60.289 54.545 0.00 0.00 38.15 4.42
4318 5088 2.963101 TGGATTAGGTGGTGATCCTACG 59.037 50.000 3.57 0.00 41.18 3.51
4319 5089 4.804261 GCATGGATTAGGTGGTGATCCTAC 60.804 50.000 0.00 0.00 41.18 3.18
4320 5090 3.327757 GCATGGATTAGGTGGTGATCCTA 59.672 47.826 0.00 0.00 41.18 2.94
4321 5091 2.107204 GCATGGATTAGGTGGTGATCCT 59.893 50.000 0.00 0.00 41.18 3.24
4322 5092 2.107204 AGCATGGATTAGGTGGTGATCC 59.893 50.000 0.00 0.00 41.02 3.36
4323 5093 3.181451 TGAGCATGGATTAGGTGGTGATC 60.181 47.826 0.00 0.00 0.00 2.92
4324 5094 2.779430 TGAGCATGGATTAGGTGGTGAT 59.221 45.455 0.00 0.00 0.00 3.06
4325 5095 2.092968 GTGAGCATGGATTAGGTGGTGA 60.093 50.000 0.00 0.00 0.00 4.02
4326 5096 2.092753 AGTGAGCATGGATTAGGTGGTG 60.093 50.000 0.00 0.00 0.00 4.17
4327 5097 2.171448 GAGTGAGCATGGATTAGGTGGT 59.829 50.000 0.00 0.00 0.00 4.16
4328 5098 2.486191 GGAGTGAGCATGGATTAGGTGG 60.486 54.545 0.00 0.00 0.00 4.61
4329 5099 2.804572 CGGAGTGAGCATGGATTAGGTG 60.805 54.545 0.00 0.00 0.00 4.00
4330 5100 1.414181 CGGAGTGAGCATGGATTAGGT 59.586 52.381 0.00 0.00 0.00 3.08
4331 5101 1.270518 CCGGAGTGAGCATGGATTAGG 60.271 57.143 0.00 0.00 0.00 2.69
4332 5102 1.688735 TCCGGAGTGAGCATGGATTAG 59.311 52.381 0.00 0.00 0.00 1.73
4333 5103 1.688735 CTCCGGAGTGAGCATGGATTA 59.311 52.381 24.04 0.00 0.00 1.75
4334 5104 0.467384 CTCCGGAGTGAGCATGGATT 59.533 55.000 24.04 0.00 0.00 3.01
4335 5105 2.131405 CTCCGGAGTGAGCATGGAT 58.869 57.895 24.04 0.00 0.00 3.41
4336 5106 3.621225 CTCCGGAGTGAGCATGGA 58.379 61.111 24.04 0.00 0.00 3.41
4355 5125 4.666253 TCAGCAGCTGCAACCCCC 62.666 66.667 38.24 9.36 45.16 5.40
4356 5126 2.598394 TTCAGCAGCTGCAACCCC 60.598 61.111 38.24 10.15 45.16 4.95
4357 5127 2.633509 CCTTCAGCAGCTGCAACCC 61.634 63.158 38.24 10.93 45.16 4.11
4358 5128 0.964358 ATCCTTCAGCAGCTGCAACC 60.964 55.000 38.24 11.34 45.16 3.77
4359 5129 1.742761 TATCCTTCAGCAGCTGCAAC 58.257 50.000 38.24 11.74 45.16 4.17
4360 5130 2.092807 TGATATCCTTCAGCAGCTGCAA 60.093 45.455 38.24 24.17 45.16 4.08
4361 5131 1.487558 TGATATCCTTCAGCAGCTGCA 59.512 47.619 38.24 18.36 45.16 4.41
4362 5132 2.144730 CTGATATCCTTCAGCAGCTGC 58.855 52.381 31.53 31.53 36.96 5.25
4369 5139 2.032204 GCTTTGCGCTGATATCCTTCAG 60.032 50.000 9.73 0.00 44.87 3.02
4370 5140 1.942657 GCTTTGCGCTGATATCCTTCA 59.057 47.619 9.73 0.00 35.14 3.02
4371 5141 1.265365 GGCTTTGCGCTGATATCCTTC 59.735 52.381 9.73 0.00 39.13 3.46
4372 5142 1.312815 GGCTTTGCGCTGATATCCTT 58.687 50.000 9.73 0.00 39.13 3.36
4373 5143 0.536006 GGGCTTTGCGCTGATATCCT 60.536 55.000 9.73 0.00 38.48 3.24
4374 5144 1.845809 CGGGCTTTGCGCTGATATCC 61.846 60.000 9.73 2.06 39.38 2.59
4375 5145 1.571460 CGGGCTTTGCGCTGATATC 59.429 57.895 9.73 0.00 39.38 1.63
4376 5146 1.893808 CCGGGCTTTGCGCTGATAT 60.894 57.895 9.73 0.00 39.38 1.63
4377 5147 2.324014 ATCCGGGCTTTGCGCTGATA 62.324 55.000 9.73 0.00 41.67 2.15
4378 5148 3.704231 ATCCGGGCTTTGCGCTGAT 62.704 57.895 9.73 7.47 39.61 2.90
4379 5149 4.408821 ATCCGGGCTTTGCGCTGA 62.409 61.111 9.73 4.40 38.75 4.26
4380 5150 3.880846 GATCCGGGCTTTGCGCTG 61.881 66.667 9.73 0.00 39.38 5.18
4384 5154 3.880846 CTGCGATCCGGGCTTTGC 61.881 66.667 0.00 3.29 0.00 3.68
4385 5155 3.880846 GCTGCGATCCGGGCTTTG 61.881 66.667 0.00 0.00 0.00 2.77
4391 5161 3.519973 TATGCTGGCTGCGATCCGG 62.520 63.158 11.85 0.00 46.63 5.14
4392 5162 2.029518 TATGCTGGCTGCGATCCG 59.970 61.111 11.85 0.00 46.63 4.18
4393 5163 3.647824 GTATGCTGGCTGCGATCC 58.352 61.111 11.85 0.00 46.63 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.