Multiple sequence alignment - TraesCS1D01G048100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G048100 chr1D 100.000 3574 0 0 1 3574 28174952 28171379 0.000000e+00 6601.0
1 TraesCS1D01G048100 chr1D 88.034 468 44 4 997 1458 490503357 490502896 8.730000e-151 544.0
2 TraesCS1D01G048100 chr1D 85.673 349 45 5 1 347 30131336 30130991 2.620000e-96 363.0
3 TraesCS1D01G048100 chr1B 87.227 1926 125 58 685 2529 45442018 45443903 0.000000e+00 2082.0
4 TraesCS1D01G048100 chr1B 92.350 1464 73 13 1102 2533 45629587 45628131 0.000000e+00 2047.0
5 TraesCS1D01G048100 chr1B 92.292 1466 72 14 1102 2533 45604893 45603435 0.000000e+00 2043.0
6 TraesCS1D01G048100 chr1B 92.224 1466 73 14 1102 2533 45487230 45485772 0.000000e+00 2037.0
7 TraesCS1D01G048100 chr1B 91.718 1304 69 13 1262 2533 45547451 45546155 0.000000e+00 1773.0
8 TraesCS1D01G048100 chr1B 88.839 1335 88 30 1238 2529 45709280 45710596 0.000000e+00 1583.0
9 TraesCS1D01G048100 chr1B 91.580 1152 72 10 1143 2287 45559774 45560907 0.000000e+00 1567.0
10 TraesCS1D01G048100 chr1B 92.817 1058 41 9 2533 3574 45546083 45545045 0.000000e+00 1500.0
11 TraesCS1D01G048100 chr1B 92.722 1058 42 9 2533 3574 45603363 45602325 0.000000e+00 1495.0
12 TraesCS1D01G048100 chr1B 92.628 1058 43 9 2533 3574 45485700 45484662 0.000000e+00 1489.0
13 TraesCS1D01G048100 chr1B 92.628 1058 43 9 2533 3574 45628059 45627021 0.000000e+00 1489.0
14 TraesCS1D01G048100 chr1B 88.005 867 60 24 1705 2529 45501014 45501878 0.000000e+00 985.0
15 TraesCS1D01G048100 chr1B 80.078 1290 165 51 998 2239 683319501 683318256 0.000000e+00 874.0
16 TraesCS1D01G048100 chr1B 79.136 1342 180 59 915 2204 683265999 683264706 0.000000e+00 835.0
17 TraesCS1D01G048100 chr1B 87.860 486 36 10 348 827 45585486 45585018 1.880000e-152 549.0
18 TraesCS1D01G048100 chr1B 87.654 486 37 10 348 827 45526369 45525901 8.730000e-151 544.0
19 TraesCS1D01G048100 chr1B 87.654 486 37 10 348 827 45642550 45642082 8.730000e-151 544.0
20 TraesCS1D01G048100 chr1B 87.243 486 39 10 348 827 45469034 45468566 1.890000e-147 532.0
21 TraesCS1D01G048100 chr1B 93.617 235 12 2 874 1106 45525852 45525619 7.340000e-92 348.0
22 TraesCS1D01G048100 chr1B 93.617 235 12 2 874 1106 45642033 45641800 7.340000e-92 348.0
23 TraesCS1D01G048100 chr1B 93.191 235 13 2 874 1106 45468517 45468284 3.420000e-90 342.0
24 TraesCS1D01G048100 chr1B 92.797 236 12 4 874 1106 45584969 45584736 1.590000e-88 337.0
25 TraesCS1D01G048100 chr1B 87.119 295 20 8 2533 2825 45501954 45502232 5.760000e-83 318.0
26 TraesCS1D01G048100 chr1B 86.824 296 20 12 2533 2825 45443979 45444258 2.680000e-81 313.0
27 TraesCS1D01G048100 chr1B 94.615 130 7 0 3359 3488 45483040 45482911 6.050000e-48 202.0
28 TraesCS1D01G048100 chr1B 94.615 130 7 0 3359 3488 45543410 45543281 6.050000e-48 202.0
29 TraesCS1D01G048100 chr1B 94.615 130 7 0 3359 3488 45600689 45600560 6.050000e-48 202.0
30 TraesCS1D01G048100 chr1B 94.615 130 7 0 3359 3488 45625385 45625256 6.050000e-48 202.0
31 TraesCS1D01G048100 chr1B 80.658 243 30 6 348 574 45411187 45411428 4.740000e-39 172.0
32 TraesCS1D01G048100 chr1B 89.922 129 13 0 3364 3492 45345296 45345168 2.210000e-37 167.0
33 TraesCS1D01G048100 chr1B 100.000 28 0 0 3332 3359 45483082 45483055 6.000000e-03 52.8
34 TraesCS1D01G048100 chr1B 100.000 28 0 0 3332 3359 45543452 45543425 6.000000e-03 52.8
35 TraesCS1D01G048100 chr1B 100.000 28 0 0 3332 3359 45600731 45600704 6.000000e-03 52.8
36 TraesCS1D01G048100 chr1A 87.175 1848 142 35 412 2213 29156541 29154743 0.000000e+00 2012.0
37 TraesCS1D01G048100 chr1A 93.278 729 30 6 935 1650 29122909 29123631 0.000000e+00 1057.0
38 TraesCS1D01G048100 chr1A 80.673 1278 171 40 998 2239 588692851 588691614 0.000000e+00 922.0
39 TraesCS1D01G048100 chr1A 82.327 447 53 12 348 775 29113019 29113458 7.290000e-97 364.0
40 TraesCS1D01G048100 chr1A 87.031 293 26 8 2533 2825 29124393 29124673 1.600000e-83 320.0
41 TraesCS1D01G048100 chr1A 90.323 93 6 2 583 673 29122621 29122712 6.270000e-23 119.0
42 TraesCS1D01G048100 chr1A 95.522 67 3 0 348 414 29158714 29158648 1.360000e-19 108.0
43 TraesCS1D01G048100 chrUn 92.796 1055 41 9 2533 3571 343317033 343318068 0.000000e+00 1495.0
44 TraesCS1D01G048100 chrUn 90.856 1028 69 10 1267 2287 257479711 257480720 0.000000e+00 1354.0
45 TraesCS1D01G048100 chrUn 92.162 791 44 6 1234 2015 436831932 436832713 0.000000e+00 1101.0
46 TraesCS1D01G048100 chrUn 93.182 572 19 5 2533 3100 429050686 429050131 0.000000e+00 822.0
47 TraesCS1D01G048100 chrUn 89.550 555 25 15 2011 2533 429051311 429050758 0.000000e+00 673.0
48 TraesCS1D01G048100 chrUn 87.860 486 36 10 348 827 243509667 243509199 1.880000e-152 549.0
49 TraesCS1D01G048100 chrUn 87.860 486 36 10 348 827 276476474 276476006 1.880000e-152 549.0
50 TraesCS1D01G048100 chrUn 88.791 455 18 15 2108 2530 343316505 343316958 8.790000e-146 527.0
51 TraesCS1D01G048100 chrUn 93.617 235 12 2 874 1106 422457870 422457637 7.340000e-92 348.0
52 TraesCS1D01G048100 chrUn 93.191 235 13 2 874 1106 243509150 243508917 3.420000e-90 342.0
53 TraesCS1D01G048100 chrUn 93.220 236 11 4 874 1106 276475957 276475724 3.420000e-90 342.0
54 TraesCS1D01G048100 chrUn 86.824 296 20 12 2533 2825 257481074 257481353 2.680000e-81 313.0
55 TraesCS1D01G048100 chr7A 91.066 347 31 0 1 347 648210127 648210473 1.500000e-128 470.0
56 TraesCS1D01G048100 chr3D 90.778 347 31 1 1 347 164285174 164285519 2.510000e-126 462.0
57 TraesCS1D01G048100 chr5D 91.265 332 28 1 19 350 396799 396469 5.440000e-123 451.0
58 TraesCS1D01G048100 chr5D 86.819 349 41 5 1 347 533534702 533535047 5.600000e-103 385.0
59 TraesCS1D01G048100 chr7D 90.116 344 33 1 1 344 562613824 562614166 2.530000e-121 446.0
60 TraesCS1D01G048100 chr5A 89.706 340 31 4 19 355 219328 219666 7.090000e-117 431.0
61 TraesCS1D01G048100 chr7B 88.539 349 40 0 1 349 745145211 745144863 1.190000e-114 424.0
62 TraesCS1D01G048100 chr5B 89.118 340 33 4 19 355 1942103 1942441 1.530000e-113 420.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G048100 chr1D 28171379 28174952 3573 True 6601.000000 6601 100.000000 1 3574 1 chr1D.!!$R1 3573
1 TraesCS1D01G048100 chr1B 45709280 45710596 1316 False 1583.000000 1583 88.839000 1238 2529 1 chr1B.!!$F3 1291
2 TraesCS1D01G048100 chr1B 45559774 45560907 1133 False 1567.000000 1567 91.580000 1143 2287 1 chr1B.!!$F2 1144
3 TraesCS1D01G048100 chr1B 45625256 45629587 4331 True 1246.000000 2047 93.197667 1102 3574 3 chr1B.!!$R10 2472
4 TraesCS1D01G048100 chr1B 45442018 45444258 2240 False 1197.500000 2082 87.025500 685 2825 2 chr1B.!!$F4 2140
5 TraesCS1D01G048100 chr1B 45600560 45604893 4333 True 948.200000 2043 94.907250 1102 3574 4 chr1B.!!$R9 2472
6 TraesCS1D01G048100 chr1B 45482911 45487230 4319 True 945.200000 2037 94.866750 1102 3574 4 chr1B.!!$R5 2472
7 TraesCS1D01G048100 chr1B 45543281 45547451 4170 True 881.950000 1773 94.787500 1262 3574 4 chr1B.!!$R7 2312
8 TraesCS1D01G048100 chr1B 683318256 683319501 1245 True 874.000000 874 80.078000 998 2239 1 chr1B.!!$R3 1241
9 TraesCS1D01G048100 chr1B 683264706 683265999 1293 True 835.000000 835 79.136000 915 2204 1 chr1B.!!$R2 1289
10 TraesCS1D01G048100 chr1B 45501014 45502232 1218 False 651.500000 985 87.562000 1705 2825 2 chr1B.!!$F5 1120
11 TraesCS1D01G048100 chr1B 45525619 45526369 750 True 446.000000 544 90.635500 348 1106 2 chr1B.!!$R6 758
12 TraesCS1D01G048100 chr1B 45641800 45642550 750 True 446.000000 544 90.635500 348 1106 2 chr1B.!!$R11 758
13 TraesCS1D01G048100 chr1B 45584736 45585486 750 True 443.000000 549 90.328500 348 1106 2 chr1B.!!$R8 758
14 TraesCS1D01G048100 chr1B 45468284 45469034 750 True 437.000000 532 90.217000 348 1106 2 chr1B.!!$R4 758
15 TraesCS1D01G048100 chr1A 29154743 29158714 3971 True 1060.000000 2012 91.348500 348 2213 2 chr1A.!!$R2 1865
16 TraesCS1D01G048100 chr1A 588691614 588692851 1237 True 922.000000 922 80.673000 998 2239 1 chr1A.!!$R1 1241
17 TraesCS1D01G048100 chr1A 29122621 29124673 2052 False 498.666667 1057 90.210667 583 2825 3 chr1A.!!$F2 2242
18 TraesCS1D01G048100 chrUn 436831932 436832713 781 False 1101.000000 1101 92.162000 1234 2015 1 chrUn.!!$F1 781
19 TraesCS1D01G048100 chrUn 343316505 343318068 1563 False 1011.000000 1495 90.793500 2108 3571 2 chrUn.!!$F3 1463
20 TraesCS1D01G048100 chrUn 257479711 257481353 1642 False 833.500000 1354 88.840000 1267 2825 2 chrUn.!!$F2 1558
21 TraesCS1D01G048100 chrUn 429050131 429051311 1180 True 747.500000 822 91.366000 2011 3100 2 chrUn.!!$R4 1089
22 TraesCS1D01G048100 chrUn 243508917 243509667 750 True 445.500000 549 90.525500 348 1106 2 chrUn.!!$R2 758
23 TraesCS1D01G048100 chrUn 276475724 276476474 750 True 445.500000 549 90.540000 348 1106 2 chrUn.!!$R3 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.029300 CCGTTATTTGCTGCCGGATG 59.971 55.0 5.05 0.00 41.08 3.51 F
244 245 0.036732 TGTTTGCCGAGATGCTCCTT 59.963 50.0 0.00 0.00 0.00 3.36 F
310 311 0.038526 GGTTTGGCTCTCGACGAAGA 60.039 55.0 0.00 0.00 0.00 2.87 F
312 313 0.038526 TTTGGCTCTCGACGAAGACC 60.039 55.0 0.00 0.76 0.00 3.85 F
1777 4070 0.176680 CATCGTCCCTCTCCCAGTTG 59.823 60.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 3603 0.255318 TCGTACAGGGAGAGGGAGTC 59.745 60.000 0.00 0.0 0.00 3.36 R
1777 4070 0.652592 ATCGTCTGCGTTGCTATTGC 59.347 50.000 0.00 0.0 39.49 3.56 R
2253 4575 0.256752 TGGAAGCCATGGACATGAGG 59.743 55.000 18.40 0.0 41.20 3.86 R
2319 4673 9.708092 AGAGGCACTAAAGTTACTACTTAAAAG 57.292 33.333 0.00 0.0 41.20 2.27 R
3437 5906 0.319986 TCCAAGCAACGCACGTGATA 60.320 50.000 22.23 0.0 0.00 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.066892 TGAACTATTTAAACATGTCTTTCTGCT 57.933 29.630 0.00 0.00 0.00 4.24
27 28 9.899226 GAACTATTTAAACATGTCTTTCTGCTT 57.101 29.630 0.00 0.00 0.00 3.91
28 29 9.683069 AACTATTTAAACATGTCTTTCTGCTTG 57.317 29.630 0.00 0.00 0.00 4.01
29 30 8.850156 ACTATTTAAACATGTCTTTCTGCTTGT 58.150 29.630 0.00 0.00 0.00 3.16
30 31 9.334693 CTATTTAAACATGTCTTTCTGCTTGTC 57.665 33.333 0.00 0.00 0.00 3.18
31 32 3.885484 AACATGTCTTTCTGCTTGTCG 57.115 42.857 0.00 0.00 0.00 4.35
32 33 2.146342 ACATGTCTTTCTGCTTGTCGG 58.854 47.619 0.00 0.00 0.00 4.79
33 34 2.146342 CATGTCTTTCTGCTTGTCGGT 58.854 47.619 0.00 0.00 0.00 4.69
34 35 3.244078 ACATGTCTTTCTGCTTGTCGGTA 60.244 43.478 0.00 0.00 0.00 4.02
35 36 3.026630 TGTCTTTCTGCTTGTCGGTAG 57.973 47.619 0.00 0.00 0.00 3.18
36 37 2.288825 TGTCTTTCTGCTTGTCGGTAGG 60.289 50.000 0.00 0.00 0.00 3.18
37 38 1.079503 CTTTCTGCTTGTCGGTAGGC 58.920 55.000 0.00 0.00 0.00 3.93
38 39 0.669318 TTTCTGCTTGTCGGTAGGCG 60.669 55.000 0.00 0.00 0.00 5.52
39 40 1.529152 TTCTGCTTGTCGGTAGGCGA 61.529 55.000 0.00 0.00 0.00 5.54
40 41 1.517257 CTGCTTGTCGGTAGGCGAG 60.517 63.158 0.00 0.00 36.56 5.03
42 43 2.885861 CTTGTCGGTAGGCGAGCT 59.114 61.111 0.00 0.00 0.00 4.09
43 44 1.517257 CTTGTCGGTAGGCGAGCTG 60.517 63.158 0.00 0.00 0.00 4.24
44 45 2.890847 CTTGTCGGTAGGCGAGCTGG 62.891 65.000 0.00 0.00 0.00 4.85
45 46 4.208686 GTCGGTAGGCGAGCTGGG 62.209 72.222 0.00 0.00 0.00 4.45
46 47 4.435970 TCGGTAGGCGAGCTGGGA 62.436 66.667 0.00 0.00 0.00 4.37
47 48 4.208686 CGGTAGGCGAGCTGGGAC 62.209 72.222 0.00 0.00 0.00 4.46
48 49 2.760385 GGTAGGCGAGCTGGGACT 60.760 66.667 0.00 0.00 0.00 3.85
49 50 1.455217 GGTAGGCGAGCTGGGACTA 60.455 63.158 0.00 0.00 0.00 2.59
50 51 1.041447 GGTAGGCGAGCTGGGACTAA 61.041 60.000 0.00 0.00 0.00 2.24
51 52 0.822164 GTAGGCGAGCTGGGACTAAA 59.178 55.000 0.00 0.00 0.00 1.85
52 53 1.413077 GTAGGCGAGCTGGGACTAAAT 59.587 52.381 0.00 0.00 0.00 1.40
53 54 0.466124 AGGCGAGCTGGGACTAAATC 59.534 55.000 0.00 0.00 0.00 2.17
54 55 0.466124 GGCGAGCTGGGACTAAATCT 59.534 55.000 0.00 0.00 0.00 2.40
55 56 1.134371 GGCGAGCTGGGACTAAATCTT 60.134 52.381 0.00 0.00 0.00 2.40
56 57 2.633488 GCGAGCTGGGACTAAATCTTT 58.367 47.619 0.00 0.00 0.00 2.52
57 58 2.352960 GCGAGCTGGGACTAAATCTTTG 59.647 50.000 0.00 0.00 0.00 2.77
58 59 2.352960 CGAGCTGGGACTAAATCTTTGC 59.647 50.000 0.00 0.00 0.00 3.68
59 60 2.685388 GAGCTGGGACTAAATCTTTGCC 59.315 50.000 0.00 0.00 0.00 4.52
60 61 1.401905 GCTGGGACTAAATCTTTGCCG 59.598 52.381 0.00 0.00 0.00 5.69
61 62 2.939640 GCTGGGACTAAATCTTTGCCGA 60.940 50.000 0.00 0.00 0.00 5.54
62 63 2.939103 CTGGGACTAAATCTTTGCCGAG 59.061 50.000 0.00 0.00 0.00 4.63
63 64 2.569853 TGGGACTAAATCTTTGCCGAGA 59.430 45.455 0.00 0.00 0.00 4.04
64 65 3.198872 GGGACTAAATCTTTGCCGAGAG 58.801 50.000 0.00 0.00 0.00 3.20
65 66 2.609916 GGACTAAATCTTTGCCGAGAGC 59.390 50.000 0.00 0.00 44.14 4.09
66 67 2.609916 GACTAAATCTTTGCCGAGAGCC 59.390 50.000 0.00 0.00 42.71 4.70
67 68 2.027192 ACTAAATCTTTGCCGAGAGCCA 60.027 45.455 0.00 0.00 42.71 4.75
68 69 1.168714 AAATCTTTGCCGAGAGCCAC 58.831 50.000 0.00 0.00 42.71 5.01
69 70 0.326264 AATCTTTGCCGAGAGCCACT 59.674 50.000 0.00 0.00 42.71 4.00
70 71 0.107945 ATCTTTGCCGAGAGCCACTC 60.108 55.000 0.00 0.00 42.71 3.51
71 72 1.188219 TCTTTGCCGAGAGCCACTCT 61.188 55.000 0.00 0.00 44.28 3.24
72 73 0.321122 CTTTGCCGAGAGCCACTCTT 60.321 55.000 0.00 0.00 41.35 2.85
73 74 0.603707 TTTGCCGAGAGCCACTCTTG 60.604 55.000 5.06 5.06 41.35 3.02
96 97 3.500982 CAAATAGTTGCAACCATGACCG 58.499 45.455 25.62 5.39 0.00 4.79
97 98 2.489938 ATAGTTGCAACCATGACCGT 57.510 45.000 25.62 7.43 0.00 4.83
98 99 1.518325 TAGTTGCAACCATGACCGTG 58.482 50.000 25.62 0.00 0.00 4.94
99 100 1.371635 GTTGCAACCATGACCGTGC 60.372 57.895 19.15 0.00 37.51 5.34
100 101 2.560119 TTGCAACCATGACCGTGCC 61.560 57.895 0.00 0.00 36.12 5.01
101 102 4.101790 GCAACCATGACCGTGCCG 62.102 66.667 0.00 0.00 0.00 5.69
102 103 2.668212 CAACCATGACCGTGCCGT 60.668 61.111 0.00 0.00 0.00 5.68
103 104 2.112297 AACCATGACCGTGCCGTT 59.888 55.556 0.00 0.00 0.00 4.44
104 105 0.951525 CAACCATGACCGTGCCGTTA 60.952 55.000 0.00 0.00 0.00 3.18
105 106 0.035820 AACCATGACCGTGCCGTTAT 60.036 50.000 0.00 0.00 0.00 1.89
106 107 0.035820 ACCATGACCGTGCCGTTATT 60.036 50.000 0.00 0.00 0.00 1.40
107 108 1.091537 CCATGACCGTGCCGTTATTT 58.908 50.000 0.00 0.00 0.00 1.40
108 109 1.202132 CCATGACCGTGCCGTTATTTG 60.202 52.381 0.00 0.00 0.00 2.32
109 110 0.450184 ATGACCGTGCCGTTATTTGC 59.550 50.000 0.00 0.00 0.00 3.68
110 111 0.604243 TGACCGTGCCGTTATTTGCT 60.604 50.000 0.00 0.00 0.00 3.91
111 112 0.179200 GACCGTGCCGTTATTTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
112 113 1.514014 CCGTGCCGTTATTTGCTGC 60.514 57.895 0.00 0.00 0.00 5.25
113 114 1.514014 CGTGCCGTTATTTGCTGCC 60.514 57.895 0.00 0.00 0.00 4.85
114 115 1.514014 GTGCCGTTATTTGCTGCCG 60.514 57.895 0.00 0.00 0.00 5.69
115 116 2.102161 GCCGTTATTTGCTGCCGG 59.898 61.111 0.00 0.00 41.50 6.13
116 117 2.403378 GCCGTTATTTGCTGCCGGA 61.403 57.895 5.05 0.00 41.08 5.14
117 118 1.724582 GCCGTTATTTGCTGCCGGAT 61.725 55.000 5.05 0.00 41.08 4.18
118 119 0.029300 CCGTTATTTGCTGCCGGATG 59.971 55.000 5.05 0.00 41.08 3.51
119 120 0.732571 CGTTATTTGCTGCCGGATGT 59.267 50.000 5.05 0.00 0.00 3.06
120 121 1.531677 CGTTATTTGCTGCCGGATGTG 60.532 52.381 5.05 0.00 0.00 3.21
121 122 0.455410 TTATTTGCTGCCGGATGTGC 59.545 50.000 5.05 3.21 0.00 4.57
122 123 1.383456 TATTTGCTGCCGGATGTGCC 61.383 55.000 5.05 0.00 0.00 5.01
123 124 4.657408 TTGCTGCCGGATGTGCCA 62.657 61.111 5.05 0.00 35.94 4.92
147 148 3.731295 CAAAACTTTGCCGTGTGGT 57.269 47.368 0.00 0.00 37.67 4.16
148 149 1.276415 CAAAACTTTGCCGTGTGGTG 58.724 50.000 0.00 0.00 37.67 4.17
149 150 0.174617 AAAACTTTGCCGTGTGGTGG 59.825 50.000 0.00 0.00 37.67 4.61
161 162 3.341270 TGGTGGCCACTTGGTTCT 58.659 55.556 33.91 0.00 37.57 3.01
162 163 1.618030 TGGTGGCCACTTGGTTCTT 59.382 52.632 33.91 0.00 37.57 2.52
163 164 0.754957 TGGTGGCCACTTGGTTCTTG 60.755 55.000 33.91 0.00 37.57 3.02
164 165 1.463553 GGTGGCCACTTGGTTCTTGG 61.464 60.000 33.91 0.00 37.57 3.61
171 172 4.178545 CCACTTGGTTCTTGGCAAATAG 57.821 45.455 0.00 0.00 0.00 1.73
172 173 3.573967 CCACTTGGTTCTTGGCAAATAGT 59.426 43.478 0.00 0.00 0.00 2.12
173 174 4.549458 CACTTGGTTCTTGGCAAATAGTG 58.451 43.478 0.00 5.24 0.00 2.74
182 183 4.763593 CAAATAGTGCCGTTGCCG 57.236 55.556 0.00 0.00 36.33 5.69
183 184 2.167161 CAAATAGTGCCGTTGCCGA 58.833 52.632 0.00 0.00 36.33 5.54
184 185 0.096976 CAAATAGTGCCGTTGCCGAG 59.903 55.000 0.00 0.00 36.33 4.63
185 186 0.321298 AAATAGTGCCGTTGCCGAGT 60.321 50.000 0.00 0.00 36.33 4.18
186 187 1.019278 AATAGTGCCGTTGCCGAGTG 61.019 55.000 0.00 0.00 36.33 3.51
187 188 2.167398 ATAGTGCCGTTGCCGAGTGT 62.167 55.000 0.00 0.00 36.33 3.55
188 189 2.372040 TAGTGCCGTTGCCGAGTGTT 62.372 55.000 0.00 0.00 36.33 3.32
189 190 3.276091 TGCCGTTGCCGAGTGTTG 61.276 61.111 0.00 0.00 36.33 3.33
190 191 4.683334 GCCGTTGCCGAGTGTTGC 62.683 66.667 0.00 0.00 35.63 4.17
191 192 4.025401 CCGTTGCCGAGTGTTGCC 62.025 66.667 0.00 0.00 35.63 4.52
192 193 2.972505 CGTTGCCGAGTGTTGCCT 60.973 61.111 0.00 0.00 35.63 4.75
193 194 2.542907 CGTTGCCGAGTGTTGCCTT 61.543 57.895 0.00 0.00 35.63 4.35
194 195 1.733526 GTTGCCGAGTGTTGCCTTT 59.266 52.632 0.00 0.00 0.00 3.11
195 196 0.102300 GTTGCCGAGTGTTGCCTTTT 59.898 50.000 0.00 0.00 0.00 2.27
196 197 0.820871 TTGCCGAGTGTTGCCTTTTT 59.179 45.000 0.00 0.00 0.00 1.94
197 198 0.102120 TGCCGAGTGTTGCCTTTTTG 59.898 50.000 0.00 0.00 0.00 2.44
198 199 1.215014 GCCGAGTGTTGCCTTTTTGC 61.215 55.000 0.00 0.00 0.00 3.68
199 200 0.597377 CCGAGTGTTGCCTTTTTGCC 60.597 55.000 0.00 0.00 0.00 4.52
200 201 0.934436 CGAGTGTTGCCTTTTTGCCG 60.934 55.000 0.00 0.00 0.00 5.69
201 202 0.383949 GAGTGTTGCCTTTTTGCCGA 59.616 50.000 0.00 0.00 0.00 5.54
202 203 0.385390 AGTGTTGCCTTTTTGCCGAG 59.615 50.000 0.00 0.00 0.00 4.63
203 204 0.597377 GTGTTGCCTTTTTGCCGAGG 60.597 55.000 0.00 0.00 36.09 4.63
207 208 4.734652 CCTTTTTGCCGAGGCCTA 57.265 55.556 4.42 0.00 41.09 3.93
208 209 2.180674 CCTTTTTGCCGAGGCCTAC 58.819 57.895 4.42 0.00 41.09 3.18
209 210 0.322546 CCTTTTTGCCGAGGCCTACT 60.323 55.000 4.42 0.00 41.09 2.57
210 211 0.804989 CTTTTTGCCGAGGCCTACTG 59.195 55.000 4.42 0.00 41.09 2.74
211 212 0.109723 TTTTTGCCGAGGCCTACTGT 59.890 50.000 4.42 0.00 41.09 3.55
212 213 0.321298 TTTTGCCGAGGCCTACTGTC 60.321 55.000 4.42 0.00 41.09 3.51
213 214 2.501223 TTTGCCGAGGCCTACTGTCG 62.501 60.000 4.42 4.43 41.09 4.35
215 216 4.208686 CCGAGGCCTACTGTCGGC 62.209 72.222 16.45 14.48 46.18 5.54
222 223 2.526304 GCCTACTGTCGGCATTATCA 57.474 50.000 17.51 0.00 46.77 2.15
223 224 3.045601 GCCTACTGTCGGCATTATCAT 57.954 47.619 17.51 0.00 46.77 2.45
224 225 2.738846 GCCTACTGTCGGCATTATCATG 59.261 50.000 17.51 0.00 46.77 3.07
225 226 3.803715 GCCTACTGTCGGCATTATCATGT 60.804 47.826 17.51 0.00 46.77 3.21
226 227 3.742882 CCTACTGTCGGCATTATCATGTG 59.257 47.826 0.00 0.00 32.28 3.21
227 228 3.266510 ACTGTCGGCATTATCATGTGT 57.733 42.857 0.00 0.00 32.28 3.72
228 229 3.609853 ACTGTCGGCATTATCATGTGTT 58.390 40.909 0.00 0.00 32.28 3.32
229 230 4.009675 ACTGTCGGCATTATCATGTGTTT 58.990 39.130 0.00 0.00 32.28 2.83
230 231 4.142622 ACTGTCGGCATTATCATGTGTTTG 60.143 41.667 0.00 0.00 32.28 2.93
231 232 3.108144 GTCGGCATTATCATGTGTTTGC 58.892 45.455 0.00 0.00 32.28 3.68
232 233 2.098934 TCGGCATTATCATGTGTTTGCC 59.901 45.455 17.00 17.00 44.78 4.52
233 234 2.462889 GGCATTATCATGTGTTTGCCG 58.537 47.619 13.74 0.00 40.11 5.69
234 235 2.098934 GGCATTATCATGTGTTTGCCGA 59.901 45.455 13.74 0.00 40.11 5.54
235 236 3.365832 GCATTATCATGTGTTTGCCGAG 58.634 45.455 0.00 0.00 32.28 4.63
236 237 3.065233 GCATTATCATGTGTTTGCCGAGA 59.935 43.478 0.00 0.00 32.28 4.04
237 238 4.261322 GCATTATCATGTGTTTGCCGAGAT 60.261 41.667 0.00 0.00 32.28 2.75
238 239 4.880886 TTATCATGTGTTTGCCGAGATG 57.119 40.909 0.00 0.00 0.00 2.90
239 240 0.804364 TCATGTGTTTGCCGAGATGC 59.196 50.000 0.00 0.00 0.00 3.91
240 241 0.806868 CATGTGTTTGCCGAGATGCT 59.193 50.000 0.00 0.00 0.00 3.79
241 242 1.089920 ATGTGTTTGCCGAGATGCTC 58.910 50.000 0.00 0.00 0.00 4.26
242 243 0.955428 TGTGTTTGCCGAGATGCTCC 60.955 55.000 0.00 0.00 0.00 4.70
243 244 0.674895 GTGTTTGCCGAGATGCTCCT 60.675 55.000 0.00 0.00 0.00 3.69
244 245 0.036732 TGTTTGCCGAGATGCTCCTT 59.963 50.000 0.00 0.00 0.00 3.36
245 246 1.168714 GTTTGCCGAGATGCTCCTTT 58.831 50.000 0.00 0.00 0.00 3.11
246 247 1.541588 GTTTGCCGAGATGCTCCTTTT 59.458 47.619 0.00 0.00 0.00 2.27
247 248 1.167851 TTGCCGAGATGCTCCTTTTG 58.832 50.000 0.00 0.00 0.00 2.44
248 249 1.308069 TGCCGAGATGCTCCTTTTGC 61.308 55.000 0.00 0.00 0.00 3.68
249 250 1.997928 GCCGAGATGCTCCTTTTGCC 61.998 60.000 0.00 0.00 0.00 4.52
250 251 1.709147 CCGAGATGCTCCTTTTGCCG 61.709 60.000 0.00 0.00 0.00 5.69
251 252 1.709147 CGAGATGCTCCTTTTGCCGG 61.709 60.000 0.00 0.00 0.00 6.13
252 253 1.379044 AGATGCTCCTTTTGCCGGG 60.379 57.895 2.18 0.00 0.00 5.73
253 254 1.378514 GATGCTCCTTTTGCCGGGA 60.379 57.895 2.18 0.00 0.00 5.14
256 257 4.303257 CTCCTTTTGCCGGGAGTC 57.697 61.111 2.18 0.00 42.86 3.36
257 258 1.374947 CTCCTTTTGCCGGGAGTCA 59.625 57.895 2.18 0.00 42.86 3.41
258 259 0.955919 CTCCTTTTGCCGGGAGTCAC 60.956 60.000 2.18 0.00 42.86 3.67
259 260 2.325082 CCTTTTGCCGGGAGTCACG 61.325 63.158 8.12 8.12 0.00 4.35
260 261 2.966309 CTTTTGCCGGGAGTCACGC 61.966 63.158 9.95 5.73 0.00 5.34
261 262 3.469863 TTTTGCCGGGAGTCACGCT 62.470 57.895 9.95 0.00 0.00 5.07
262 263 3.876589 TTTGCCGGGAGTCACGCTC 62.877 63.158 9.95 3.66 43.39 5.03
266 267 4.180946 CGGGAGTCACGCTCGGAG 62.181 72.222 0.00 0.00 45.03 4.63
267 268 3.063084 GGGAGTCACGCTCGGAGT 61.063 66.667 6.90 0.00 45.03 3.85
268 269 2.486042 GGAGTCACGCTCGGAGTC 59.514 66.667 6.90 0.00 45.03 3.36
269 270 2.041686 GGAGTCACGCTCGGAGTCT 61.042 63.158 6.90 0.00 45.03 3.24
270 271 1.426223 GAGTCACGCTCGGAGTCTC 59.574 63.158 6.90 0.00 34.13 3.36
271 272 1.003112 AGTCACGCTCGGAGTCTCT 60.003 57.895 6.90 0.00 0.00 3.10
272 273 0.606944 AGTCACGCTCGGAGTCTCTT 60.607 55.000 6.90 0.00 0.00 2.85
273 274 1.085091 GTCACGCTCGGAGTCTCTTA 58.915 55.000 6.90 0.00 0.00 2.10
274 275 1.085091 TCACGCTCGGAGTCTCTTAC 58.915 55.000 6.90 0.00 0.00 2.34
275 276 1.088306 CACGCTCGGAGTCTCTTACT 58.912 55.000 6.90 0.00 42.80 2.24
276 277 1.469308 CACGCTCGGAGTCTCTTACTT 59.531 52.381 6.90 0.00 39.07 2.24
277 278 2.095161 CACGCTCGGAGTCTCTTACTTT 60.095 50.000 6.90 0.00 39.07 2.66
278 279 2.095161 ACGCTCGGAGTCTCTTACTTTG 60.095 50.000 6.90 0.00 39.07 2.77
279 280 2.263945 GCTCGGAGTCTCTTACTTTGC 58.736 52.381 6.90 0.00 39.07 3.68
280 281 2.882324 CTCGGAGTCTCTTACTTTGCC 58.118 52.381 0.00 0.00 39.07 4.52
281 282 1.201647 TCGGAGTCTCTTACTTTGCCG 59.798 52.381 0.00 0.00 41.94 5.69
282 283 1.201647 CGGAGTCTCTTACTTTGCCGA 59.798 52.381 0.00 0.00 42.75 5.54
283 284 2.732597 CGGAGTCTCTTACTTTGCCGAG 60.733 54.545 0.00 0.00 42.75 4.63
284 285 2.231721 GGAGTCTCTTACTTTGCCGAGT 59.768 50.000 0.00 0.00 39.07 4.18
285 286 3.246619 GAGTCTCTTACTTTGCCGAGTG 58.753 50.000 0.00 0.00 39.07 3.51
286 287 1.727335 GTCTCTTACTTTGCCGAGTGC 59.273 52.381 0.00 0.00 41.77 4.40
287 288 1.079503 CTCTTACTTTGCCGAGTGCC 58.920 55.000 0.00 0.00 40.16 5.01
288 289 0.685097 TCTTACTTTGCCGAGTGCCT 59.315 50.000 0.00 0.00 40.16 4.75
289 290 0.798776 CTTACTTTGCCGAGTGCCTG 59.201 55.000 0.00 0.00 40.16 4.85
290 291 0.107831 TTACTTTGCCGAGTGCCTGT 59.892 50.000 0.00 0.00 40.16 4.00
291 292 0.602638 TACTTTGCCGAGTGCCTGTG 60.603 55.000 0.00 0.00 40.16 3.66
292 293 2.594303 TTTGCCGAGTGCCTGTGG 60.594 61.111 0.00 0.00 40.16 4.17
293 294 3.414136 TTTGCCGAGTGCCTGTGGT 62.414 57.895 0.00 0.00 40.16 4.16
294 295 2.902423 TTTGCCGAGTGCCTGTGGTT 62.902 55.000 0.00 0.00 40.16 3.67
295 296 2.594592 GCCGAGTGCCTGTGGTTT 60.595 61.111 0.00 0.00 0.00 3.27
296 297 2.908073 GCCGAGTGCCTGTGGTTTG 61.908 63.158 0.00 0.00 0.00 2.93
297 298 2.260869 CCGAGTGCCTGTGGTTTGG 61.261 63.158 0.00 0.00 0.00 3.28
302 303 3.673599 GCCTGTGGTTTGGCTCTC 58.326 61.111 0.00 0.00 45.26 3.20
303 304 2.328099 GCCTGTGGTTTGGCTCTCG 61.328 63.158 0.00 0.00 45.26 4.04
304 305 1.371183 CCTGTGGTTTGGCTCTCGA 59.629 57.895 0.00 0.00 0.00 4.04
305 306 0.951040 CCTGTGGTTTGGCTCTCGAC 60.951 60.000 0.00 0.00 0.00 4.20
306 307 1.284982 CTGTGGTTTGGCTCTCGACG 61.285 60.000 0.00 0.00 0.00 5.12
307 308 1.006571 GTGGTTTGGCTCTCGACGA 60.007 57.895 0.00 0.00 0.00 4.20
308 309 0.599204 GTGGTTTGGCTCTCGACGAA 60.599 55.000 0.00 0.00 0.00 3.85
309 310 0.319555 TGGTTTGGCTCTCGACGAAG 60.320 55.000 0.00 0.99 0.00 3.79
310 311 0.038526 GGTTTGGCTCTCGACGAAGA 60.039 55.000 0.00 0.00 0.00 2.87
311 312 1.061485 GTTTGGCTCTCGACGAAGAC 58.939 55.000 0.00 2.55 0.00 3.01
312 313 0.038526 TTTGGCTCTCGACGAAGACC 60.039 55.000 0.00 0.76 0.00 3.85
313 314 1.176619 TTGGCTCTCGACGAAGACCA 61.177 55.000 7.98 7.98 0.00 4.02
314 315 0.965866 TGGCTCTCGACGAAGACCAT 60.966 55.000 7.98 0.00 0.00 3.55
315 316 0.526524 GGCTCTCGACGAAGACCATG 60.527 60.000 0.00 0.00 0.00 3.66
316 317 0.452184 GCTCTCGACGAAGACCATGA 59.548 55.000 0.00 0.00 0.00 3.07
317 318 1.795889 GCTCTCGACGAAGACCATGAC 60.796 57.143 0.00 0.00 0.00 3.06
318 319 1.468914 CTCTCGACGAAGACCATGACA 59.531 52.381 0.00 0.00 0.00 3.58
319 320 1.199327 TCTCGACGAAGACCATGACAC 59.801 52.381 0.00 0.00 0.00 3.67
320 321 0.242825 TCGACGAAGACCATGACACC 59.757 55.000 0.00 0.00 0.00 4.16
321 322 0.736325 CGACGAAGACCATGACACCC 60.736 60.000 0.00 0.00 0.00 4.61
322 323 0.736325 GACGAAGACCATGACACCCG 60.736 60.000 0.00 0.00 0.00 5.28
323 324 1.447838 CGAAGACCATGACACCCGG 60.448 63.158 0.00 0.00 0.00 5.73
324 325 1.745489 GAAGACCATGACACCCGGC 60.745 63.158 0.00 0.00 0.00 6.13
325 326 3.605749 AAGACCATGACACCCGGCG 62.606 63.158 0.00 0.00 0.00 6.46
326 327 4.388499 GACCATGACACCCGGCGT 62.388 66.667 6.01 0.00 0.00 5.68
327 328 2.998480 ACCATGACACCCGGCGTA 60.998 61.111 6.01 0.00 0.00 4.42
328 329 2.306255 GACCATGACACCCGGCGTAT 62.306 60.000 6.01 0.00 0.00 3.06
329 330 1.044231 ACCATGACACCCGGCGTATA 61.044 55.000 6.01 0.00 0.00 1.47
330 331 0.599204 CCATGACACCCGGCGTATAC 60.599 60.000 6.01 0.00 0.00 1.47
331 332 0.937699 CATGACACCCGGCGTATACG 60.938 60.000 20.87 20.87 43.27 3.06
332 333 1.102809 ATGACACCCGGCGTATACGA 61.103 55.000 28.66 4.70 43.02 3.43
333 334 1.311651 TGACACCCGGCGTATACGAA 61.312 55.000 28.66 0.00 43.02 3.85
334 335 0.179140 GACACCCGGCGTATACGAAA 60.179 55.000 28.66 0.00 43.02 3.46
335 336 0.461135 ACACCCGGCGTATACGAAAT 59.539 50.000 28.66 5.85 43.02 2.17
336 337 1.134729 ACACCCGGCGTATACGAAATT 60.135 47.619 28.66 5.31 43.02 1.82
337 338 1.935199 CACCCGGCGTATACGAAATTT 59.065 47.619 28.66 6.39 43.02 1.82
338 339 2.033492 CACCCGGCGTATACGAAATTTC 60.033 50.000 28.66 8.20 43.02 2.17
339 340 2.159057 ACCCGGCGTATACGAAATTTCT 60.159 45.455 28.66 6.09 43.02 2.52
340 341 3.068024 ACCCGGCGTATACGAAATTTCTA 59.932 43.478 28.66 7.95 43.02 2.10
341 342 3.671928 CCCGGCGTATACGAAATTTCTAG 59.328 47.826 28.66 4.26 43.02 2.43
342 343 4.293415 CCGGCGTATACGAAATTTCTAGT 58.707 43.478 28.66 9.79 43.02 2.57
343 344 5.451908 CCGGCGTATACGAAATTTCTAGTA 58.548 41.667 28.66 11.53 43.02 1.82
344 345 5.566774 CCGGCGTATACGAAATTTCTAGTAG 59.433 44.000 28.66 2.86 43.02 2.57
345 346 6.138761 CGGCGTATACGAAATTTCTAGTAGT 58.861 40.000 28.66 8.46 43.02 2.73
346 347 6.085979 CGGCGTATACGAAATTTCTAGTAGTG 59.914 42.308 28.66 1.48 43.02 2.74
398 399 7.493971 CACACACAAAAAGGTTTATGATGGAAA 59.506 33.333 0.00 0.00 0.00 3.13
435 2545 1.523711 CCGACGATCAATGGTGGGG 60.524 63.158 0.00 0.00 32.28 4.96
446 2556 1.054406 ATGGTGGGGAGATGGGTACG 61.054 60.000 0.00 0.00 0.00 3.67
452 2562 1.276421 GGGGAGATGGGTACGATGATG 59.724 57.143 0.00 0.00 0.00 3.07
464 2574 3.154827 ACGATGATGGTGAAAACCCTT 57.845 42.857 0.00 0.00 0.00 3.95
474 2584 7.454380 TGATGGTGAAAACCCTTGATAAGAAAT 59.546 33.333 0.00 0.00 0.00 2.17
508 2618 2.028130 TCGCAAGACACCAAAACCAAT 58.972 42.857 0.00 0.00 45.01 3.16
537 2652 0.250727 TGGGACGGGAAAGCAAAGAG 60.251 55.000 0.00 0.00 0.00 2.85
541 2656 2.551504 GGACGGGAAAGCAAAGAGGTTA 60.552 50.000 0.00 0.00 36.83 2.85
554 2669 7.500992 AGCAAAGAGGTTATTGATAGAATCGA 58.499 34.615 0.00 0.00 0.00 3.59
555 2670 8.153550 AGCAAAGAGGTTATTGATAGAATCGAT 58.846 33.333 0.00 0.00 37.22 3.59
839 3023 1.930567 TAAGTATGAACGGCCGCTTC 58.069 50.000 28.58 25.97 0.00 3.86
850 3034 2.509336 CCGCTTCTTGCCGTCGAT 60.509 61.111 0.00 0.00 38.78 3.59
851 3035 2.100631 CCGCTTCTTGCCGTCGATT 61.101 57.895 0.00 0.00 38.78 3.34
852 3036 1.345176 CGCTTCTTGCCGTCGATTC 59.655 57.895 0.00 0.00 38.78 2.52
853 3037 1.345176 GCTTCTTGCCGTCGATTCG 59.655 57.895 0.00 0.00 35.15 3.34
854 3038 1.345176 CTTCTTGCCGTCGATTCGC 59.655 57.895 0.00 0.00 0.00 4.70
855 3039 1.078759 CTTCTTGCCGTCGATTCGCT 61.079 55.000 0.00 0.00 0.00 4.93
856 3040 1.351430 TTCTTGCCGTCGATTCGCTG 61.351 55.000 0.00 0.00 0.00 5.18
857 3041 2.802667 CTTGCCGTCGATTCGCTGG 61.803 63.158 0.00 6.62 0.00 4.85
860 3044 2.813474 CCGTCGATTCGCTGGCAA 60.813 61.111 0.00 0.00 0.00 4.52
861 3045 2.173669 CCGTCGATTCGCTGGCAAT 61.174 57.895 0.00 0.00 0.00 3.56
862 3046 0.874175 CCGTCGATTCGCTGGCAATA 60.874 55.000 0.00 0.00 0.00 1.90
863 3047 0.927537 CGTCGATTCGCTGGCAATAA 59.072 50.000 0.00 0.00 0.00 1.40
864 3048 1.326245 CGTCGATTCGCTGGCAATAAA 59.674 47.619 0.00 0.00 0.00 1.40
865 3049 2.597505 CGTCGATTCGCTGGCAATAAAG 60.598 50.000 0.00 0.00 0.00 1.85
866 3050 2.607635 GTCGATTCGCTGGCAATAAAGA 59.392 45.455 0.00 0.00 0.00 2.52
867 3051 3.063452 GTCGATTCGCTGGCAATAAAGAA 59.937 43.478 0.00 0.00 0.00 2.52
868 3052 3.876914 TCGATTCGCTGGCAATAAAGAAT 59.123 39.130 0.00 0.00 0.00 2.40
869 3053 4.335315 TCGATTCGCTGGCAATAAAGAATT 59.665 37.500 0.00 0.00 0.00 2.17
870 3054 5.036737 CGATTCGCTGGCAATAAAGAATTT 58.963 37.500 0.00 0.00 43.42 1.82
871 3055 5.516339 CGATTCGCTGGCAATAAAGAATTTT 59.484 36.000 0.00 0.00 40.09 1.82
872 3056 6.034898 CGATTCGCTGGCAATAAAGAATTTTT 59.965 34.615 0.00 0.00 40.09 1.94
911 3100 7.912778 AGAATAGAAGCTCTAAGGACTGAAT 57.087 36.000 0.00 0.00 31.96 2.57
1044 3251 1.678635 CGCCACCACCACCATTGAT 60.679 57.895 0.00 0.00 0.00 2.57
1285 3492 2.680352 GCTCCGACCCAGACCTCA 60.680 66.667 0.00 0.00 0.00 3.86
1286 3493 2.283529 GCTCCGACCCAGACCTCAA 61.284 63.158 0.00 0.00 0.00 3.02
1326 3533 3.249189 TTCCTGCTCACCCGCCTT 61.249 61.111 0.00 0.00 0.00 4.35
1338 3545 4.452733 CGCCTTGAGGACGACCCC 62.453 72.222 0.00 0.00 37.05 4.95
1565 3817 4.700365 CACCGTGCAGCGAGACGA 62.700 66.667 5.37 0.00 44.77 4.20
1777 4070 0.176680 CATCGTCCCTCTCCCAGTTG 59.823 60.000 0.00 0.00 0.00 3.16
1910 4212 0.386858 CTCAAGAAGAACGACGGCGA 60.387 55.000 22.49 0.00 41.64 5.54
2067 4378 3.898482 TGTCATCGATCTCAAGGACCTA 58.102 45.455 0.00 0.00 0.00 3.08
2079 4390 2.239654 CAAGGACCTAAGCCTCATGGAA 59.760 50.000 0.00 0.00 33.76 3.53
2145 4458 2.031919 CCACCTGCTGCGTTGGTA 59.968 61.111 10.57 0.00 32.13 3.25
2252 4574 3.129287 CACCTGTTGTTGCAGAGAACTTT 59.871 43.478 9.23 0.00 38.70 2.66
2253 4575 3.378427 ACCTGTTGTTGCAGAGAACTTTC 59.622 43.478 9.23 0.00 38.70 2.62
2277 4599 0.394762 TGTCCATGGCTTCCATCAGC 60.395 55.000 6.96 0.00 43.15 4.26
2287 4609 0.178995 TTCCATCAGCAGTGTTGGCA 60.179 50.000 7.16 0.00 41.64 4.92
2342 4705 9.264719 TGACTTTTAAGTAGTAACTTTAGTGCC 57.735 33.333 0.00 0.00 43.60 5.01
2351 4714 8.276477 AGTAGTAACTTTAGTGCCTCTCTATCT 58.724 37.037 0.00 0.00 29.00 1.98
2358 4721 7.284489 ACTTTAGTGCCTCTCTATCTTACTGAG 59.716 40.741 0.00 0.00 0.00 3.35
2417 4787 7.921214 TCGTGATAGACTGAATCTTTTGATACC 59.079 37.037 0.00 0.00 38.40 2.73
2437 4807 4.549458 ACCGATTGAATTGTCAGCAAAAG 58.451 39.130 0.00 0.00 38.21 2.27
2530 4902 1.823828 CGCAAGAGCAATGATGAAGC 58.176 50.000 0.00 0.00 42.27 3.86
2535 4979 1.378882 GAGCAATGATGAAGCGGCCA 61.379 55.000 2.24 0.00 0.00 5.36
2548 4996 1.818674 AGCGGCCAACTTGAATAAAGG 59.181 47.619 2.24 0.00 40.51 3.11
2560 5008 4.487714 TGAATAAAGGAGGCGATCAACT 57.512 40.909 0.00 0.00 0.00 3.16
2604 5055 3.181434 TGAGCAAAATATTCCCCGGCTAT 60.181 43.478 0.00 0.00 0.00 2.97
2746 5202 5.835257 ACTGAAAATATGTATGTGCATGGC 58.165 37.500 0.00 0.00 0.00 4.40
3149 5607 9.139174 ACATTATTGAATTTCACGGACATTTTC 57.861 29.630 0.00 0.00 0.00 2.29
3182 5640 7.962373 TGCTATCGACATTTTTCATAAGTTGTG 59.038 33.333 0.00 0.00 0.00 3.33
3481 5950 8.996651 AAGAAGTCGATCCCCAAATAATAATT 57.003 30.769 0.00 0.00 0.00 1.40
3541 6010 6.880942 AGTAGGAGTATAATTCTGTCGACC 57.119 41.667 14.12 0.00 0.00 4.79
3571 6040 7.827701 TCACTAGTTGTCTTGTCTATAGTTGG 58.172 38.462 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.066892 AGCAGAAAGACATGTTTAAATAGTTCA 57.933 29.630 0.00 0.00 0.00 3.18
1 2 9.899226 AAGCAGAAAGACATGTTTAAATAGTTC 57.101 29.630 0.00 0.00 0.00 3.01
2 3 9.683069 CAAGCAGAAAGACATGTTTAAATAGTT 57.317 29.630 0.00 0.00 0.00 2.24
3 4 8.850156 ACAAGCAGAAAGACATGTTTAAATAGT 58.150 29.630 0.00 0.00 0.00 2.12
4 5 9.334693 GACAAGCAGAAAGACATGTTTAAATAG 57.665 33.333 0.00 0.00 0.00 1.73
5 6 8.015087 CGACAAGCAGAAAGACATGTTTAAATA 58.985 33.333 0.00 0.00 0.00 1.40
6 7 6.857964 CGACAAGCAGAAAGACATGTTTAAAT 59.142 34.615 0.00 0.00 0.00 1.40
7 8 6.198687 CGACAAGCAGAAAGACATGTTTAAA 58.801 36.000 0.00 0.00 0.00 1.52
8 9 5.277779 CCGACAAGCAGAAAGACATGTTTAA 60.278 40.000 0.00 0.00 0.00 1.52
9 10 4.213270 CCGACAAGCAGAAAGACATGTTTA 59.787 41.667 0.00 0.00 0.00 2.01
10 11 3.003689 CCGACAAGCAGAAAGACATGTTT 59.996 43.478 0.00 0.00 0.00 2.83
11 12 2.549754 CCGACAAGCAGAAAGACATGTT 59.450 45.455 0.00 0.00 0.00 2.71
12 13 2.146342 CCGACAAGCAGAAAGACATGT 58.854 47.619 0.00 0.00 0.00 3.21
13 14 2.146342 ACCGACAAGCAGAAAGACATG 58.854 47.619 0.00 0.00 0.00 3.21
14 15 2.550830 ACCGACAAGCAGAAAGACAT 57.449 45.000 0.00 0.00 0.00 3.06
15 16 2.288825 CCTACCGACAAGCAGAAAGACA 60.289 50.000 0.00 0.00 0.00 3.41
16 17 2.338500 CCTACCGACAAGCAGAAAGAC 58.662 52.381 0.00 0.00 0.00 3.01
17 18 1.337823 GCCTACCGACAAGCAGAAAGA 60.338 52.381 0.00 0.00 0.00 2.52
18 19 1.079503 GCCTACCGACAAGCAGAAAG 58.920 55.000 0.00 0.00 0.00 2.62
19 20 0.669318 CGCCTACCGACAAGCAGAAA 60.669 55.000 0.00 0.00 40.02 2.52
20 21 1.080093 CGCCTACCGACAAGCAGAA 60.080 57.895 0.00 0.00 40.02 3.02
21 22 1.934220 CTCGCCTACCGACAAGCAGA 61.934 60.000 0.00 0.00 41.89 4.26
22 23 1.517257 CTCGCCTACCGACAAGCAG 60.517 63.158 0.00 0.00 41.89 4.24
23 24 2.571757 CTCGCCTACCGACAAGCA 59.428 61.111 0.00 0.00 41.89 3.91
24 25 2.886124 GCTCGCCTACCGACAAGC 60.886 66.667 0.00 0.00 41.89 4.01
25 26 1.517257 CAGCTCGCCTACCGACAAG 60.517 63.158 0.00 0.00 41.89 3.16
26 27 2.571757 CAGCTCGCCTACCGACAA 59.428 61.111 0.00 0.00 41.89 3.18
27 28 3.449227 CCAGCTCGCCTACCGACA 61.449 66.667 0.00 0.00 41.89 4.35
28 29 4.208686 CCCAGCTCGCCTACCGAC 62.209 72.222 0.00 0.00 41.89 4.79
29 30 4.435970 TCCCAGCTCGCCTACCGA 62.436 66.667 0.00 0.00 45.15 4.69
30 31 4.208686 GTCCCAGCTCGCCTACCG 62.209 72.222 0.00 0.00 38.61 4.02
31 32 1.041447 TTAGTCCCAGCTCGCCTACC 61.041 60.000 0.00 0.00 0.00 3.18
32 33 0.822164 TTTAGTCCCAGCTCGCCTAC 59.178 55.000 0.00 0.00 0.00 3.18
33 34 1.687123 GATTTAGTCCCAGCTCGCCTA 59.313 52.381 0.00 0.00 0.00 3.93
34 35 0.466124 GATTTAGTCCCAGCTCGCCT 59.534 55.000 0.00 0.00 0.00 5.52
35 36 0.466124 AGATTTAGTCCCAGCTCGCC 59.534 55.000 0.00 0.00 0.00 5.54
36 37 2.317530 AAGATTTAGTCCCAGCTCGC 57.682 50.000 0.00 0.00 0.00 5.03
37 38 2.352960 GCAAAGATTTAGTCCCAGCTCG 59.647 50.000 0.00 0.00 0.00 5.03
38 39 2.685388 GGCAAAGATTTAGTCCCAGCTC 59.315 50.000 0.00 0.00 0.00 4.09
39 40 2.728007 GGCAAAGATTTAGTCCCAGCT 58.272 47.619 0.00 0.00 0.00 4.24
40 41 1.401905 CGGCAAAGATTTAGTCCCAGC 59.598 52.381 0.00 0.00 0.00 4.85
41 42 2.939103 CTCGGCAAAGATTTAGTCCCAG 59.061 50.000 0.00 0.00 0.00 4.45
42 43 2.569853 TCTCGGCAAAGATTTAGTCCCA 59.430 45.455 0.00 0.00 0.00 4.37
43 44 3.198872 CTCTCGGCAAAGATTTAGTCCC 58.801 50.000 0.00 0.00 0.00 4.46
44 45 2.609916 GCTCTCGGCAAAGATTTAGTCC 59.390 50.000 0.00 0.00 41.35 3.85
45 46 2.609916 GGCTCTCGGCAAAGATTTAGTC 59.390 50.000 0.00 0.00 44.01 2.59
46 47 2.027192 TGGCTCTCGGCAAAGATTTAGT 60.027 45.455 0.00 0.00 43.40 2.24
47 48 2.632377 TGGCTCTCGGCAAAGATTTAG 58.368 47.619 0.00 0.00 43.40 1.85
48 49 2.779755 TGGCTCTCGGCAAAGATTTA 57.220 45.000 0.00 0.00 43.40 1.40
49 50 3.650647 TGGCTCTCGGCAAAGATTT 57.349 47.368 0.00 0.00 43.40 2.17
56 57 2.659016 CAAGAGTGGCTCTCGGCA 59.341 61.111 10.63 0.00 46.86 5.69
57 58 2.125350 CCAAGAGTGGCTCTCGGC 60.125 66.667 10.63 0.00 46.86 5.54
75 76 3.057596 ACGGTCATGGTTGCAACTATTTG 60.058 43.478 27.64 18.11 35.62 2.32
76 77 3.057596 CACGGTCATGGTTGCAACTATTT 60.058 43.478 27.64 6.38 0.00 1.40
77 78 2.487762 CACGGTCATGGTTGCAACTATT 59.512 45.455 27.64 10.13 0.00 1.73
78 79 2.083774 CACGGTCATGGTTGCAACTAT 58.916 47.619 27.64 24.56 0.00 2.12
79 80 1.518325 CACGGTCATGGTTGCAACTA 58.482 50.000 27.64 23.36 0.00 2.24
80 81 1.795170 GCACGGTCATGGTTGCAACT 61.795 55.000 27.64 7.56 0.00 3.16
81 82 1.371635 GCACGGTCATGGTTGCAAC 60.372 57.895 21.59 21.59 0.00 4.17
82 83 2.560119 GGCACGGTCATGGTTGCAA 61.560 57.895 0.00 0.00 0.00 4.08
83 84 2.983030 GGCACGGTCATGGTTGCA 60.983 61.111 9.81 0.00 0.00 4.08
96 97 1.514014 CGGCAGCAAATAACGGCAC 60.514 57.895 0.00 0.00 0.00 5.01
97 98 2.695759 CCGGCAGCAAATAACGGCA 61.696 57.895 0.00 0.00 37.93 5.69
98 99 1.724582 ATCCGGCAGCAAATAACGGC 61.725 55.000 0.00 0.00 43.93 5.68
99 100 0.029300 CATCCGGCAGCAAATAACGG 59.971 55.000 0.00 0.00 45.52 4.44
100 101 0.732571 ACATCCGGCAGCAAATAACG 59.267 50.000 0.00 0.00 0.00 3.18
101 102 1.798813 GCACATCCGGCAGCAAATAAC 60.799 52.381 0.00 0.00 0.00 1.89
102 103 0.455410 GCACATCCGGCAGCAAATAA 59.545 50.000 0.00 0.00 0.00 1.40
103 104 1.383456 GGCACATCCGGCAGCAAATA 61.383 55.000 0.00 0.00 0.00 1.40
104 105 2.713967 GGCACATCCGGCAGCAAAT 61.714 57.895 0.00 0.00 0.00 2.32
105 106 3.372730 GGCACATCCGGCAGCAAA 61.373 61.111 0.00 0.00 0.00 3.68
106 107 4.657408 TGGCACATCCGGCAGCAA 62.657 61.111 0.00 0.00 36.38 3.91
129 130 1.276415 CACCACACGGCAAAGTTTTG 58.724 50.000 0.28 0.28 41.03 2.44
130 131 0.174617 CCACCACACGGCAAAGTTTT 59.825 50.000 0.00 0.00 34.57 2.43
131 132 1.813192 CCACCACACGGCAAAGTTT 59.187 52.632 0.00 0.00 34.57 2.66
132 133 3.520402 CCACCACACGGCAAAGTT 58.480 55.556 0.00 0.00 34.57 2.66
144 145 0.754957 CAAGAACCAAGTGGCCACCA 60.755 55.000 32.29 0.00 39.32 4.17
145 146 1.463553 CCAAGAACCAAGTGGCCACC 61.464 60.000 32.29 15.69 39.32 4.61
146 147 2.041153 CCAAGAACCAAGTGGCCAC 58.959 57.895 29.22 29.22 39.32 5.01
147 148 4.597032 CCAAGAACCAAGTGGCCA 57.403 55.556 0.00 0.00 39.32 5.36
150 151 3.573967 ACTATTTGCCAAGAACCAAGTGG 59.426 43.478 0.00 0.00 42.17 4.00
151 152 4.549458 CACTATTTGCCAAGAACCAAGTG 58.451 43.478 0.00 0.00 0.00 3.16
152 153 3.005791 GCACTATTTGCCAAGAACCAAGT 59.994 43.478 0.00 0.00 46.63 3.16
153 154 3.578688 GCACTATTTGCCAAGAACCAAG 58.421 45.455 0.00 0.00 46.63 3.61
154 155 3.658757 GCACTATTTGCCAAGAACCAA 57.341 42.857 0.00 0.00 46.63 3.67
176 177 0.102300 AAAAGGCAACACTCGGCAAC 59.898 50.000 0.00 0.00 41.41 4.17
177 178 0.820871 AAAAAGGCAACACTCGGCAA 59.179 45.000 0.00 0.00 41.41 4.52
178 179 0.102120 CAAAAAGGCAACACTCGGCA 59.898 50.000 0.00 0.00 41.41 5.69
179 180 1.215014 GCAAAAAGGCAACACTCGGC 61.215 55.000 0.00 0.00 41.41 5.54
180 181 0.597377 GGCAAAAAGGCAACACTCGG 60.597 55.000 0.00 0.00 43.51 4.63
181 182 0.934436 CGGCAAAAAGGCAACACTCG 60.934 55.000 0.00 0.00 44.47 4.18
182 183 0.383949 TCGGCAAAAAGGCAACACTC 59.616 50.000 0.00 0.00 44.47 3.51
183 184 0.385390 CTCGGCAAAAAGGCAACACT 59.615 50.000 0.00 0.00 44.47 3.55
184 185 0.597377 CCTCGGCAAAAAGGCAACAC 60.597 55.000 0.00 0.00 44.47 3.32
185 186 1.739049 CCTCGGCAAAAAGGCAACA 59.261 52.632 0.00 0.00 44.47 3.33
186 187 4.653555 CCTCGGCAAAAAGGCAAC 57.346 55.556 0.00 0.00 44.47 4.17
190 191 0.322546 AGTAGGCCTCGGCAAAAAGG 60.323 55.000 9.68 0.00 44.11 3.11
191 192 0.804989 CAGTAGGCCTCGGCAAAAAG 59.195 55.000 9.68 0.00 44.11 2.27
192 193 0.109723 ACAGTAGGCCTCGGCAAAAA 59.890 50.000 9.68 0.00 44.11 1.94
193 194 0.321298 GACAGTAGGCCTCGGCAAAA 60.321 55.000 9.68 0.00 44.11 2.44
194 195 1.295423 GACAGTAGGCCTCGGCAAA 59.705 57.895 9.68 0.00 44.11 3.68
195 196 2.978824 GACAGTAGGCCTCGGCAA 59.021 61.111 9.68 0.00 44.11 4.52
196 197 3.449227 CGACAGTAGGCCTCGGCA 61.449 66.667 9.68 0.00 44.11 5.69
197 198 4.208686 CCGACAGTAGGCCTCGGC 62.209 72.222 9.68 0.00 40.52 5.54
204 205 3.742882 CACATGATAATGCCGACAGTAGG 59.257 47.826 0.00 0.00 28.42 3.18
205 206 4.371786 ACACATGATAATGCCGACAGTAG 58.628 43.478 0.00 0.00 28.42 2.57
206 207 4.400529 ACACATGATAATGCCGACAGTA 57.599 40.909 0.00 0.00 0.00 2.74
207 208 3.266510 ACACATGATAATGCCGACAGT 57.733 42.857 0.00 0.00 0.00 3.55
208 209 4.345288 CAAACACATGATAATGCCGACAG 58.655 43.478 0.00 0.00 0.00 3.51
209 210 3.427368 GCAAACACATGATAATGCCGACA 60.427 43.478 0.00 0.00 0.00 4.35
210 211 3.108144 GCAAACACATGATAATGCCGAC 58.892 45.455 0.00 0.00 0.00 4.79
211 212 2.098934 GGCAAACACATGATAATGCCGA 59.901 45.455 16.99 0.00 43.26 5.54
212 213 2.462889 GGCAAACACATGATAATGCCG 58.537 47.619 16.99 0.00 43.26 5.69
214 215 3.065233 TCTCGGCAAACACATGATAATGC 59.935 43.478 0.00 4.74 0.00 3.56
215 216 4.880886 TCTCGGCAAACACATGATAATG 57.119 40.909 0.00 0.00 0.00 1.90
216 217 4.261322 GCATCTCGGCAAACACATGATAAT 60.261 41.667 0.00 0.00 0.00 1.28
217 218 3.065233 GCATCTCGGCAAACACATGATAA 59.935 43.478 0.00 0.00 0.00 1.75
218 219 2.613595 GCATCTCGGCAAACACATGATA 59.386 45.455 0.00 0.00 0.00 2.15
219 220 1.402968 GCATCTCGGCAAACACATGAT 59.597 47.619 0.00 0.00 0.00 2.45
220 221 0.804364 GCATCTCGGCAAACACATGA 59.196 50.000 0.00 0.00 0.00 3.07
221 222 0.806868 AGCATCTCGGCAAACACATG 59.193 50.000 0.00 0.00 35.83 3.21
222 223 1.089920 GAGCATCTCGGCAAACACAT 58.910 50.000 0.00 0.00 35.83 3.21
223 224 0.955428 GGAGCATCTCGGCAAACACA 60.955 55.000 0.00 0.00 35.83 3.72
224 225 0.674895 AGGAGCATCTCGGCAAACAC 60.675 55.000 0.00 0.00 35.83 3.32
225 226 0.036732 AAGGAGCATCTCGGCAAACA 59.963 50.000 0.00 0.00 35.83 2.83
226 227 1.168714 AAAGGAGCATCTCGGCAAAC 58.831 50.000 0.00 0.00 35.83 2.93
227 228 1.541147 CAAAAGGAGCATCTCGGCAAA 59.459 47.619 0.00 0.00 35.83 3.68
228 229 1.167851 CAAAAGGAGCATCTCGGCAA 58.832 50.000 0.00 0.00 35.83 4.52
229 230 1.308069 GCAAAAGGAGCATCTCGGCA 61.308 55.000 0.00 0.00 35.83 5.69
230 231 1.431036 GCAAAAGGAGCATCTCGGC 59.569 57.895 0.00 0.00 33.73 5.54
231 232 1.709147 CGGCAAAAGGAGCATCTCGG 61.709 60.000 0.00 0.00 33.73 4.63
232 233 1.709147 CCGGCAAAAGGAGCATCTCG 61.709 60.000 0.00 0.00 33.73 4.04
233 234 1.379642 CCCGGCAAAAGGAGCATCTC 61.380 60.000 0.00 0.00 33.73 2.75
234 235 1.379044 CCCGGCAAAAGGAGCATCT 60.379 57.895 0.00 0.00 33.73 2.90
235 236 1.378514 TCCCGGCAAAAGGAGCATC 60.379 57.895 0.00 0.00 0.00 3.91
236 237 1.379044 CTCCCGGCAAAAGGAGCAT 60.379 57.895 0.00 0.00 43.11 3.79
237 238 2.034066 CTCCCGGCAAAAGGAGCA 59.966 61.111 0.00 0.00 43.11 4.26
240 241 1.072505 GTGACTCCCGGCAAAAGGA 59.927 57.895 0.00 0.00 0.00 3.36
241 242 2.325082 CGTGACTCCCGGCAAAAGG 61.325 63.158 0.00 0.00 0.00 3.11
242 243 2.966309 GCGTGACTCCCGGCAAAAG 61.966 63.158 0.00 0.00 0.00 2.27
243 244 2.975799 GCGTGACTCCCGGCAAAA 60.976 61.111 0.00 0.00 0.00 2.44
244 245 3.876589 GAGCGTGACTCCCGGCAAA 62.877 63.158 0.00 0.00 39.75 3.68
245 246 4.373116 GAGCGTGACTCCCGGCAA 62.373 66.667 0.00 0.00 39.75 4.52
249 250 4.180946 CTCCGAGCGTGACTCCCG 62.181 72.222 0.00 0.00 43.01 5.14
250 251 3.053849 GACTCCGAGCGTGACTCCC 62.054 68.421 0.00 0.00 43.01 4.30
251 252 1.984321 GAGACTCCGAGCGTGACTCC 61.984 65.000 0.00 0.00 43.01 3.85
252 253 1.022451 AGAGACTCCGAGCGTGACTC 61.022 60.000 0.00 0.00 42.47 3.36
253 254 0.606944 AAGAGACTCCGAGCGTGACT 60.607 55.000 0.00 0.00 0.00 3.41
254 255 1.085091 TAAGAGACTCCGAGCGTGAC 58.915 55.000 0.00 0.00 0.00 3.67
255 256 1.085091 GTAAGAGACTCCGAGCGTGA 58.915 55.000 0.00 0.00 0.00 4.35
256 257 1.088306 AGTAAGAGACTCCGAGCGTG 58.912 55.000 0.00 0.00 29.95 5.34
257 258 1.823797 AAGTAAGAGACTCCGAGCGT 58.176 50.000 0.00 0.00 37.44 5.07
258 259 2.520979 CAAAGTAAGAGACTCCGAGCG 58.479 52.381 0.00 0.00 37.44 5.03
259 260 2.263945 GCAAAGTAAGAGACTCCGAGC 58.736 52.381 0.00 0.00 37.44 5.03
260 261 2.732597 CGGCAAAGTAAGAGACTCCGAG 60.733 54.545 0.00 0.00 42.80 4.63
261 262 1.201647 CGGCAAAGTAAGAGACTCCGA 59.798 52.381 0.00 0.00 42.80 4.55
262 263 1.201647 TCGGCAAAGTAAGAGACTCCG 59.798 52.381 0.00 0.00 41.97 4.63
263 264 2.231721 ACTCGGCAAAGTAAGAGACTCC 59.768 50.000 0.00 0.00 37.44 3.85
264 265 3.246619 CACTCGGCAAAGTAAGAGACTC 58.753 50.000 0.00 0.00 37.44 3.36
265 266 2.610727 GCACTCGGCAAAGTAAGAGACT 60.611 50.000 0.00 0.00 43.97 3.24
266 267 1.727335 GCACTCGGCAAAGTAAGAGAC 59.273 52.381 0.00 0.00 43.97 3.36
267 268 2.080286 GCACTCGGCAAAGTAAGAGA 57.920 50.000 0.00 0.00 43.97 3.10
278 279 2.594592 AAACCACAGGCACTCGGC 60.595 61.111 0.00 0.00 34.60 5.54
279 280 2.260869 CCAAACCACAGGCACTCGG 61.261 63.158 0.00 0.00 34.60 4.63
280 281 3.343972 CCAAACCACAGGCACTCG 58.656 61.111 0.00 0.00 34.60 4.18
286 287 0.951040 GTCGAGAGCCAAACCACAGG 60.951 60.000 0.00 0.00 0.00 4.00
287 288 1.284982 CGTCGAGAGCCAAACCACAG 61.285 60.000 0.00 0.00 0.00 3.66
288 289 1.300620 CGTCGAGAGCCAAACCACA 60.301 57.895 0.00 0.00 0.00 4.17
289 290 0.599204 TTCGTCGAGAGCCAAACCAC 60.599 55.000 0.00 0.00 0.00 4.16
290 291 0.319555 CTTCGTCGAGAGCCAAACCA 60.320 55.000 0.00 0.00 0.00 3.67
291 292 0.038526 TCTTCGTCGAGAGCCAAACC 60.039 55.000 0.00 0.00 0.00 3.27
292 293 1.061485 GTCTTCGTCGAGAGCCAAAC 58.939 55.000 0.00 0.00 0.00 2.93
293 294 0.038526 GGTCTTCGTCGAGAGCCAAA 60.039 55.000 10.76 0.00 38.02 3.28
294 295 1.176619 TGGTCTTCGTCGAGAGCCAA 61.177 55.000 16.07 2.52 42.11 4.52
295 296 0.965866 ATGGTCTTCGTCGAGAGCCA 60.966 55.000 16.07 14.85 42.11 4.75
296 297 0.526524 CATGGTCTTCGTCGAGAGCC 60.527 60.000 16.07 10.89 42.11 4.70
297 298 0.452184 TCATGGTCTTCGTCGAGAGC 59.548 55.000 13.48 13.48 42.87 4.09
298 299 1.468914 TGTCATGGTCTTCGTCGAGAG 59.531 52.381 0.00 0.00 0.00 3.20
299 300 1.199327 GTGTCATGGTCTTCGTCGAGA 59.801 52.381 0.00 0.00 0.00 4.04
300 301 1.618861 GTGTCATGGTCTTCGTCGAG 58.381 55.000 0.00 0.00 0.00 4.04
301 302 0.242825 GGTGTCATGGTCTTCGTCGA 59.757 55.000 0.00 0.00 0.00 4.20
302 303 0.736325 GGGTGTCATGGTCTTCGTCG 60.736 60.000 0.00 0.00 0.00 5.12
303 304 0.736325 CGGGTGTCATGGTCTTCGTC 60.736 60.000 0.00 0.00 0.00 4.20
304 305 1.292223 CGGGTGTCATGGTCTTCGT 59.708 57.895 0.00 0.00 0.00 3.85
305 306 1.447838 CCGGGTGTCATGGTCTTCG 60.448 63.158 0.00 0.00 0.00 3.79
306 307 1.745489 GCCGGGTGTCATGGTCTTC 60.745 63.158 2.18 0.00 0.00 2.87
307 308 2.351276 GCCGGGTGTCATGGTCTT 59.649 61.111 2.18 0.00 0.00 3.01
308 309 4.082523 CGCCGGGTGTCATGGTCT 62.083 66.667 2.18 0.00 0.00 3.85
309 310 2.306255 ATACGCCGGGTGTCATGGTC 62.306 60.000 17.94 0.00 0.00 4.02
310 311 1.044231 TATACGCCGGGTGTCATGGT 61.044 55.000 17.94 2.46 0.00 3.55
311 312 0.599204 GTATACGCCGGGTGTCATGG 60.599 60.000 17.94 0.00 0.00 3.66
312 313 0.937699 CGTATACGCCGGGTGTCATG 60.938 60.000 17.94 8.18 0.00 3.07
313 314 1.102809 TCGTATACGCCGGGTGTCAT 61.103 55.000 20.42 11.39 39.60 3.06
314 315 1.311651 TTCGTATACGCCGGGTGTCA 61.312 55.000 20.42 3.54 39.60 3.58
315 316 0.179140 TTTCGTATACGCCGGGTGTC 60.179 55.000 20.42 1.92 39.60 3.67
316 317 0.461135 ATTTCGTATACGCCGGGTGT 59.539 50.000 20.42 18.47 39.60 4.16
317 318 1.574134 AATTTCGTATACGCCGGGTG 58.426 50.000 20.42 5.93 39.60 4.61
318 319 2.159057 AGAAATTTCGTATACGCCGGGT 60.159 45.455 20.42 1.55 39.60 5.28
319 320 2.476821 AGAAATTTCGTATACGCCGGG 58.523 47.619 20.42 0.00 39.60 5.73
320 321 4.293415 ACTAGAAATTTCGTATACGCCGG 58.707 43.478 20.42 0.00 39.60 6.13
321 322 6.085979 CACTACTAGAAATTTCGTATACGCCG 59.914 42.308 20.42 0.00 39.60 6.46
322 323 7.134815 TCACTACTAGAAATTTCGTATACGCC 58.865 38.462 20.42 5.21 39.60 5.68
323 324 7.854916 ACTCACTACTAGAAATTTCGTATACGC 59.145 37.037 20.42 5.35 39.60 4.42
324 325 9.156156 CACTCACTACTAGAAATTTCGTATACG 57.844 37.037 19.23 19.23 41.45 3.06
325 326 9.448294 CCACTCACTACTAGAAATTTCGTATAC 57.552 37.037 12.42 0.00 0.00 1.47
326 327 9.182214 ACCACTCACTACTAGAAATTTCGTATA 57.818 33.333 12.42 5.56 0.00 1.47
327 328 7.974501 CACCACTCACTACTAGAAATTTCGTAT 59.025 37.037 12.42 4.70 0.00 3.06
328 329 7.040201 ACACCACTCACTACTAGAAATTTCGTA 60.040 37.037 12.42 8.74 0.00 3.43
329 330 6.157211 CACCACTCACTACTAGAAATTTCGT 58.843 40.000 12.42 8.06 0.00 3.85
330 331 6.157211 ACACCACTCACTACTAGAAATTTCG 58.843 40.000 12.42 2.25 0.00 3.46
331 332 7.272948 CGTACACCACTCACTACTAGAAATTTC 59.727 40.741 10.33 10.33 0.00 2.17
332 333 7.040201 TCGTACACCACTCACTACTAGAAATTT 60.040 37.037 0.00 0.00 0.00 1.82
333 334 6.432162 TCGTACACCACTCACTACTAGAAATT 59.568 38.462 0.00 0.00 0.00 1.82
334 335 5.942236 TCGTACACCACTCACTACTAGAAAT 59.058 40.000 0.00 0.00 0.00 2.17
335 336 5.308014 TCGTACACCACTCACTACTAGAAA 58.692 41.667 0.00 0.00 0.00 2.52
336 337 4.898320 TCGTACACCACTCACTACTAGAA 58.102 43.478 0.00 0.00 0.00 2.10
337 338 4.541973 TCGTACACCACTCACTACTAGA 57.458 45.455 0.00 0.00 0.00 2.43
338 339 4.874396 TGATCGTACACCACTCACTACTAG 59.126 45.833 0.00 0.00 0.00 2.57
339 340 4.633126 GTGATCGTACACCACTCACTACTA 59.367 45.833 0.00 0.00 32.32 1.82
340 341 3.439476 GTGATCGTACACCACTCACTACT 59.561 47.826 0.00 0.00 32.32 2.57
341 342 3.189910 TGTGATCGTACACCACTCACTAC 59.810 47.826 10.83 0.00 39.69 2.73
342 343 3.414269 TGTGATCGTACACCACTCACTA 58.586 45.455 10.83 0.00 39.69 2.74
343 344 2.235891 TGTGATCGTACACCACTCACT 58.764 47.619 10.83 0.00 39.69 3.41
344 345 2.717580 TGTGATCGTACACCACTCAC 57.282 50.000 10.83 6.94 39.69 3.51
345 346 2.673893 GCATGTGATCGTACACCACTCA 60.674 50.000 10.83 0.00 39.69 3.41
346 347 1.927174 GCATGTGATCGTACACCACTC 59.073 52.381 10.83 0.00 39.69 3.51
398 399 1.593296 GCGTCCTCAGTCGTTAGGGT 61.593 60.000 0.00 0.00 33.40 4.34
435 2545 2.628178 TCACCATCATCGTACCCATCTC 59.372 50.000 0.00 0.00 0.00 2.75
446 2556 6.603201 TCTTATCAAGGGTTTTCACCATCATC 59.397 38.462 0.00 0.00 46.43 2.92
452 2562 8.129211 CGATATTTCTTATCAAGGGTTTTCACC 58.871 37.037 0.00 0.00 38.49 4.02
464 2574 5.447624 TCGTGAGGCGATATTTCTTATCA 57.552 39.130 0.00 0.00 45.68 2.15
508 2618 1.585895 TCCCGTCCCATGGTTAATGA 58.414 50.000 11.73 0.00 38.72 2.57
643 2763 8.479689 TGAAATCCACGGATTATAAGTTGACTA 58.520 33.333 11.67 0.00 43.26 2.59
644 2764 7.280205 GTGAAATCCACGGATTATAAGTTGACT 59.720 37.037 11.67 0.00 43.26 3.41
839 3023 2.697425 CAGCGAATCGACGGCAAG 59.303 61.111 6.91 0.00 0.00 4.01
1011 3218 3.151022 GCGGCTGGGCTAGTCTCT 61.151 66.667 0.00 0.00 0.00 3.10
1391 3601 1.076923 TACAGGGAGAGGGAGTCGC 60.077 63.158 0.00 0.00 0.00 5.19
1392 3602 1.096386 CGTACAGGGAGAGGGAGTCG 61.096 65.000 0.00 0.00 0.00 4.18
1393 3603 0.255318 TCGTACAGGGAGAGGGAGTC 59.745 60.000 0.00 0.00 0.00 3.36
1449 3665 2.355481 AGTGGTTCGTCGTTCCGC 60.355 61.111 11.75 11.75 0.00 5.54
1565 3817 1.228552 ATGGCTCGCAACCTTTGGT 60.229 52.632 0.00 0.00 37.65 3.67
1683 3964 4.564110 AAGATAAGCCCGGCCGCC 62.564 66.667 22.85 13.24 0.00 6.13
1777 4070 0.652592 ATCGTCTGCGTTGCTATTGC 59.347 50.000 0.00 0.00 39.49 3.56
1835 4134 0.823460 CAAAAGGCAACACACACCCT 59.177 50.000 0.00 0.00 41.41 4.34
1836 4135 0.809636 GCAAAAGGCAACACACACCC 60.810 55.000 0.00 0.00 43.97 4.61
2079 4390 1.667212 GTTCGGTGACAACGGAACTTT 59.333 47.619 13.91 0.00 40.10 2.66
2094 4405 2.512974 GGGTACGCCATGGTTCGG 60.513 66.667 14.67 3.17 36.17 4.30
2252 4574 0.548031 GGAAGCCATGGACATGAGGA 59.452 55.000 18.40 0.00 41.20 3.71
2253 4575 0.256752 TGGAAGCCATGGACATGAGG 59.743 55.000 18.40 0.00 41.20 3.86
2319 4673 9.708092 AGAGGCACTAAAGTTACTACTTAAAAG 57.292 33.333 0.00 0.00 41.20 2.27
2351 4714 6.808321 AAGGTGGTATATTCAGCTCAGTAA 57.192 37.500 9.97 0.00 41.42 2.24
2382 4752 1.743958 AGTCTATCACGACAGTTCCCG 59.256 52.381 0.00 0.00 36.38 5.14
2383 4753 2.753452 TCAGTCTATCACGACAGTTCCC 59.247 50.000 0.00 0.00 36.38 3.97
2417 4787 4.977963 ACACTTTTGCTGACAATTCAATCG 59.022 37.500 0.00 0.00 35.21 3.34
2437 4807 6.364976 GGCAAGATAAAATGGTAAACACACAC 59.635 38.462 0.00 0.00 0.00 3.82
2530 4902 2.423538 CCTCCTTTATTCAAGTTGGCCG 59.576 50.000 2.34 0.00 0.00 6.13
2535 4979 4.843728 TGATCGCCTCCTTTATTCAAGTT 58.156 39.130 0.00 0.00 0.00 2.66
2548 4996 0.723981 GCACAAGAGTTGATCGCCTC 59.276 55.000 3.81 3.81 0.00 4.70
2560 5008 2.351706 AGGGGTTTAAACGCACAAGA 57.648 45.000 29.58 0.00 42.95 3.02
2604 5055 4.661222 TCCAACTTGCACATATCAAGGAA 58.339 39.130 7.52 0.00 43.77 3.36
2746 5202 6.472163 GGTTGTGTTTCTTACAATCTTGTGTG 59.528 38.462 5.84 0.00 42.31 3.82
3128 5585 7.219484 AGAGAAAATGTCCGTGAAATTCAAT 57.781 32.000 0.00 0.00 0.00 2.57
3129 5586 6.633500 AGAGAAAATGTCCGTGAAATTCAA 57.367 33.333 0.00 0.00 0.00 2.69
3131 5588 9.065871 CATTAAGAGAAAATGTCCGTGAAATTC 57.934 33.333 0.00 0.00 31.13 2.17
3134 5591 6.206634 AGCATTAAGAGAAAATGTCCGTGAAA 59.793 34.615 0.00 0.00 36.82 2.69
3137 5594 5.551760 AGCATTAAGAGAAAATGTCCGTG 57.448 39.130 0.00 0.00 36.82 4.94
3138 5595 6.201044 CGATAGCATTAAGAGAAAATGTCCGT 59.799 38.462 0.00 0.00 36.82 4.69
3139 5596 6.420903 TCGATAGCATTAAGAGAAAATGTCCG 59.579 38.462 0.00 0.00 36.82 4.79
3281 5748 7.196331 ACACCTCTCATTTTCTTTTTCTTTCG 58.804 34.615 0.00 0.00 0.00 3.46
3297 5764 4.558226 AAATGTGCTGATACACCTCTCA 57.442 40.909 0.00 0.00 39.93 3.27
3370 5839 2.679996 GCCCGCCCCTGTTCAATT 60.680 61.111 0.00 0.00 0.00 2.32
3391 5860 1.830847 GGTTCCACCCAACCACCAC 60.831 63.158 0.00 0.00 44.79 4.16
3414 5883 4.611310 TTAGGACATCTTGTCTACGTCG 57.389 45.455 7.51 0.00 46.19 5.12
3437 5906 0.319986 TCCAAGCAACGCACGTGATA 60.320 50.000 22.23 0.00 0.00 2.15
3441 5910 1.092921 TTCTTCCAAGCAACGCACGT 61.093 50.000 0.00 0.00 0.00 4.49
3481 5950 1.001974 AGATCGCACTAAGCAACACCA 59.998 47.619 0.00 0.00 46.13 4.17
3529 5998 2.027745 AGTGATGCAGGTCGACAGAATT 60.028 45.455 18.91 0.00 0.00 2.17
3534 6003 1.545841 ACTAGTGATGCAGGTCGACA 58.454 50.000 18.91 0.00 0.00 4.35
3541 6010 4.564041 AGACAAGACAACTAGTGATGCAG 58.436 43.478 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.