Multiple sequence alignment - TraesCS1D01G047100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G047100 chr1D 100.000 3775 0 0 1614 5388 26701111 26704885 0.000000e+00 6972.0
1 TraesCS1D01G047100 chr1D 100.000 1052 0 0 1 1052 26699498 26700549 0.000000e+00 1943.0
2 TraesCS1D01G047100 chr1D 100.000 30 0 0 4334 4363 26705767 26705738 7.540000e-04 56.5
3 TraesCS1D01G047100 chr1A 90.792 3171 160 39 2297 5388 27754551 27757668 0.000000e+00 4117.0
4 TraesCS1D01G047100 chr1A 87.910 488 31 4 592 1052 27752394 27752880 2.840000e-152 549.0
5 TraesCS1D01G047100 chr1A 88.202 356 19 12 1666 2011 27753413 27753755 2.340000e-108 403.0
6 TraesCS1D01G047100 chr1A 90.588 170 16 0 2 171 27750739 27750908 5.430000e-55 226.0
7 TraesCS1D01G047100 chr1A 91.429 140 11 1 2163 2301 27754129 27754268 1.980000e-44 191.0
8 TraesCS1D01G047100 chr1B 88.606 2791 183 48 2272 4971 42348482 42351228 0.000000e+00 3267.0
9 TraesCS1D01G047100 chr1B 92.448 384 19 1 5015 5388 42351225 42351608 1.710000e-149 540.0
10 TraesCS1D01G047100 chr1B 85.650 446 52 9 330 766 42347145 42347587 4.920000e-125 459.0
11 TraesCS1D01G047100 chr1B 86.506 415 20 17 1614 1996 42347879 42348289 1.790000e-114 424.0
12 TraesCS1D01G047100 chr1B 90.833 240 12 5 779 1011 42347574 42347810 4.050000e-81 313.0
13 TraesCS1D01G047100 chr6D 88.208 212 19 3 3207 3414 428980679 428980888 1.160000e-61 248.0
14 TraesCS1D01G047100 chr6A 90.643 171 13 3 3145 3314 573643141 573643309 1.950000e-54 224.0
15 TraesCS1D01G047100 chr6A 90.643 171 13 3 3145 3314 574215084 574214916 1.950000e-54 224.0
16 TraesCS1D01G047100 chr6B 88.889 63 7 0 3212 3274 645981371 645981309 1.610000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G047100 chr1D 26699498 26704885 5387 False 4457.5 6972 100.0000 1 5388 2 chr1D.!!$F1 5387
1 TraesCS1D01G047100 chr1A 27750739 27757668 6929 False 1097.2 4117 89.7842 2 5388 5 chr1A.!!$F1 5386
2 TraesCS1D01G047100 chr1B 42347145 42351608 4463 False 1000.6 3267 88.8086 330 5388 5 chr1B.!!$F1 5058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 1878 0.389426 CATGCTTTGGCTCAACCTGC 60.389 55.000 0.00 0.0 40.22 4.85 F
755 1936 1.631405 CTCAACCTGCCATCCCAAAA 58.369 50.000 0.00 0.0 0.00 2.44 F
1644 2831 1.661341 GTCTGATTCCGCTGCAGATT 58.339 50.000 20.43 0.0 40.40 2.40 F
2181 3659 1.079405 GTGATCTCCCGCCGTTGAA 60.079 57.895 0.00 0.0 0.00 2.69 F
2218 3697 1.746470 TGCAGGTCATTCAGATGCTG 58.254 50.000 0.00 0.0 37.76 4.41 F
3635 5463 0.690762 TTTAGCAGGACTGGTGGGAC 59.309 55.000 13.79 0.0 41.87 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 2864 0.594796 CTTCGTTTGGCAGCAACACC 60.595 55.000 0.00 0.0 0.00 4.16 R
1700 2888 1.002087 AGGACGGATCAAACCTCACAC 59.998 52.381 0.00 0.0 0.00 3.82 R
3288 5114 1.003696 AGCTTTGTCTCTACTTGGGGC 59.996 52.381 0.00 0.0 0.00 5.80 R
3634 5462 1.105167 TCGACCACTCGAACCACAGT 61.105 55.000 0.00 0.0 46.04 3.55 R
3853 5681 1.180907 TGCAAGGCAAACTGTGTTGA 58.819 45.000 6.82 0.0 34.76 3.18 R
4764 6616 0.249868 TACACTCCTGCACTGCACAC 60.250 55.000 0.00 0.0 33.79 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.018469 TCATGGTTTCCTGGAGATGAAAAAT 58.982 36.000 0.00 0.00 32.68 1.82
34 35 5.982890 TGGTTTCCTGGAGATGAAAAATC 57.017 39.130 0.00 0.00 32.68 2.17
38 39 6.070596 GGTTTCCTGGAGATGAAAAATCCATT 60.071 38.462 0.00 0.00 42.10 3.16
40 41 5.203528 TCCTGGAGATGAAAAATCCATTCC 58.796 41.667 0.00 0.00 42.10 3.01
56 57 4.096231 TCCATTCCTTCGCATTTGTACATG 59.904 41.667 0.00 0.00 0.00 3.21
64 65 5.029650 TCGCATTTGTACATGAGTTGTTC 57.970 39.130 0.00 0.00 39.87 3.18
98 99 9.899226 GCTCTTCATATGTTTGTTAAAAAGAGT 57.101 29.630 18.60 0.00 33.45 3.24
103 104 9.567776 TCATATGTTTGTTAAAAAGAGTCCAGA 57.432 29.630 1.90 0.00 0.00 3.86
121 122 8.768957 AGTCCAGATTCATATCGAATACATTG 57.231 34.615 0.00 0.00 44.65 2.82
135 136 6.257849 TCGAATACATTGTAACAGAGATTGCC 59.742 38.462 0.00 0.00 0.00 4.52
144 145 1.632409 ACAGAGATTGCCACCATGAGT 59.368 47.619 0.00 0.00 0.00 3.41
149 150 0.615331 ATTGCCACCATGAGTCGTCT 59.385 50.000 0.00 0.00 0.00 4.18
155 156 1.079612 CCATGAGTCGTCTGCTGCA 60.080 57.895 0.88 0.88 0.00 4.41
156 157 0.671472 CCATGAGTCGTCTGCTGCAA 60.671 55.000 3.02 0.00 0.00 4.08
186 1308 8.947055 AATTGAGCACAAAAGTGTCTATTTTT 57.053 26.923 0.00 0.00 39.54 1.94
227 1350 3.160872 TGTTTCACCGTGAAGCACA 57.839 47.368 22.51 17.49 41.53 4.57
239 1362 2.226437 GTGAAGCACACCCACAGTTATG 59.774 50.000 3.21 0.00 43.05 1.90
248 1371 3.569701 CACCCACAGTTATGCTTTTCACT 59.430 43.478 0.00 0.00 0.00 3.41
251 1374 5.221244 ACCCACAGTTATGCTTTTCACTTTC 60.221 40.000 0.00 0.00 0.00 2.62
253 1376 6.145535 CCACAGTTATGCTTTTCACTTTCTC 58.854 40.000 0.00 0.00 0.00 2.87
264 1387 0.514691 CACTTTCTCAGGAAGCACGC 59.485 55.000 0.00 0.00 32.61 5.34
317 1442 1.663494 GCACGTGCTTTTCTCGAAAG 58.337 50.000 32.55 0.00 46.11 2.62
387 1513 2.341176 GTACGCCAGACCCAACGT 59.659 61.111 0.00 0.00 42.22 3.99
388 1514 2.025418 GTACGCCAGACCCAACGTG 61.025 63.158 0.00 0.00 39.43 4.49
445 1573 1.127567 TGTAAGCTCTGTGCCCCACT 61.128 55.000 0.00 0.00 44.23 4.00
465 1594 5.339530 CCACTCCCTCCTTCTAACAATCAAT 60.340 44.000 0.00 0.00 0.00 2.57
466 1595 6.183347 CACTCCCTCCTTCTAACAATCAATT 58.817 40.000 0.00 0.00 0.00 2.32
510 1639 2.029290 GTGGTTGACGTCTCCACTACAT 60.029 50.000 34.13 0.00 45.46 2.29
528 1657 9.490379 CCACTACATATGGAATTAGAAACTACC 57.510 37.037 7.80 0.00 39.87 3.18
565 1694 1.462616 TCTGTTGATTTGCCCGATGG 58.537 50.000 0.00 0.00 0.00 3.51
570 1699 2.270352 TGATTTGCCCGATGGATACC 57.730 50.000 0.00 0.00 0.00 2.73
614 1744 6.183361 GGTATGGGCATGGGATGAATATCTAT 60.183 42.308 0.00 0.00 33.68 1.98
622 1752 4.655649 TGGGATGAATATCTATCCGATGGG 59.344 45.833 10.46 0.00 43.05 4.00
624 1754 5.221541 GGGATGAATATCTATCCGATGGGTC 60.222 48.000 10.46 0.00 43.05 4.46
646 1776 6.325596 GTCGGGTATACGTAGGATTTTATCC 58.674 44.000 0.08 0.00 41.36 2.59
708 1840 4.272489 CACACCATACTCCCATTGTCATT 58.728 43.478 0.00 0.00 0.00 2.57
727 1860 6.547880 TGTCATTCTTAAACTTAAGTTGCCCA 59.452 34.615 21.22 5.89 40.69 5.36
745 1878 0.389426 CATGCTTTGGCTCAACCTGC 60.389 55.000 0.00 0.00 40.22 4.85
755 1936 1.631405 CTCAACCTGCCATCCCAAAA 58.369 50.000 0.00 0.00 0.00 2.44
762 1943 3.106827 CCTGCCATCCCAAAATTTACCT 58.893 45.455 0.00 0.00 0.00 3.08
763 1944 3.519107 CCTGCCATCCCAAAATTTACCTT 59.481 43.478 0.00 0.00 0.00 3.50
764 1945 4.019411 CCTGCCATCCCAAAATTTACCTTT 60.019 41.667 0.00 0.00 0.00 3.11
765 1946 5.514659 CCTGCCATCCCAAAATTTACCTTTT 60.515 40.000 0.00 0.00 0.00 2.27
766 1947 6.296145 CCTGCCATCCCAAAATTTACCTTTTA 60.296 38.462 0.00 0.00 0.00 1.52
767 1948 7.264294 TGCCATCCCAAAATTTACCTTTTAT 57.736 32.000 0.00 0.00 0.00 1.40
768 1949 7.694093 TGCCATCCCAAAATTTACCTTTTATT 58.306 30.769 0.00 0.00 0.00 1.40
769 1950 8.166726 TGCCATCCCAAAATTTACCTTTTATTT 58.833 29.630 0.00 0.00 0.00 1.40
770 1951 9.019656 GCCATCCCAAAATTTACCTTTTATTTT 57.980 29.630 0.00 0.00 33.12 1.82
988 2175 3.036429 GCAACCTCATCCCGCCTCT 62.036 63.158 0.00 0.00 0.00 3.69
1644 2831 1.661341 GTCTGATTCCGCTGCAGATT 58.339 50.000 20.43 0.00 40.40 2.40
1664 2852 3.448093 TGTGCAATTCTTCCCATGGTA 57.552 42.857 11.73 0.00 0.00 3.25
1667 2855 4.160065 TGTGCAATTCTTCCCATGGTATTG 59.840 41.667 11.73 12.32 0.00 1.90
1676 2864 4.665833 TCCCATGGTATTGACTAACTCG 57.334 45.455 11.73 0.00 0.00 4.18
1846 3043 4.298332 GCCATTGTTCATCTTTGTTCGTT 58.702 39.130 0.00 0.00 0.00 3.85
1897 3094 1.216977 CCCATCGCTGTACAACGGA 59.783 57.895 17.85 5.80 0.00 4.69
1925 3122 1.796017 TCGGGTATGCATAACCTCCA 58.204 50.000 32.78 17.27 38.00 3.86
1926 3123 1.414919 TCGGGTATGCATAACCTCCAC 59.585 52.381 32.78 11.63 38.00 4.02
1929 3126 2.092646 GGGTATGCATAACCTCCACACA 60.093 50.000 30.12 0.00 37.16 3.72
1976 3196 6.490040 TGCTCTAGTGATACATGTATGCACTA 59.510 38.462 30.59 30.59 36.41 2.74
1996 3216 6.484643 GCACTAGATTTTGGCAGAGATGAATA 59.515 38.462 0.00 0.00 0.00 1.75
2001 3225 6.832384 AGATTTTGGCAGAGATGAATACACAT 59.168 34.615 0.00 0.00 0.00 3.21
2002 3226 6.839124 TTTTGGCAGAGATGAATACACATT 57.161 33.333 0.00 0.00 0.00 2.71
2003 3227 6.441093 TTTGGCAGAGATGAATACACATTC 57.559 37.500 0.00 0.00 40.92 2.67
2044 3268 9.026121 AGTCTATACACACTTGATTAGTTGTCT 57.974 33.333 0.00 0.00 33.85 3.41
2045 3269 9.291664 GTCTATACACACTTGATTAGTTGTCTC 57.708 37.037 0.00 0.00 33.85 3.36
2046 3270 8.182227 TCTATACACACTTGATTAGTTGTCTCG 58.818 37.037 0.00 0.00 33.85 4.04
2052 3338 3.510388 TGATTAGTTGTCTCGGCTCTG 57.490 47.619 0.00 0.00 0.00 3.35
2089 3375 4.671377 TGACAAGAAAACTGTGCAATGTC 58.329 39.130 0.00 0.00 37.15 3.06
2090 3376 4.157472 TGACAAGAAAACTGTGCAATGTCA 59.843 37.500 10.60 10.60 42.39 3.58
2096 3382 1.171308 ACTGTGCAATGTCATGGAGC 58.829 50.000 0.00 0.00 0.00 4.70
2181 3659 1.079405 GTGATCTCCCGCCGTTGAA 60.079 57.895 0.00 0.00 0.00 2.69
2217 3696 2.089980 GTTGCAGGTCATTCAGATGCT 58.910 47.619 0.00 0.00 37.76 3.79
2218 3697 1.746470 TGCAGGTCATTCAGATGCTG 58.254 50.000 0.00 0.00 37.76 4.41
2223 3702 4.337555 GCAGGTCATTCAGATGCTGTAAAT 59.662 41.667 0.00 0.00 34.10 1.40
2257 3736 9.649316 TTTACTTTTCTTTTCCTTTCCCTATGA 57.351 29.630 0.00 0.00 0.00 2.15
2259 3738 8.354711 ACTTTTCTTTTCCTTTCCCTATGATC 57.645 34.615 0.00 0.00 0.00 2.92
2263 3742 6.187682 TCTTTTCCTTTCCCTATGATCAACC 58.812 40.000 0.00 0.00 0.00 3.77
2307 4073 7.759489 ATTTGTGAACTTGCTTAGTATTCCA 57.241 32.000 0.00 0.00 35.54 3.53
2324 4090 7.989826 AGTATTCCATTTACATCTGAACTTGC 58.010 34.615 0.00 0.00 0.00 4.01
2343 4109 3.908213 TGCGCGATTGCAATATAGAGTA 58.092 40.909 12.97 5.76 43.02 2.59
2346 4112 5.408299 TGCGCGATTGCAATATAGAGTATTT 59.592 36.000 12.97 0.00 43.02 1.40
2347 4113 5.954349 GCGCGATTGCAATATAGAGTATTTC 59.046 40.000 12.97 0.00 42.97 2.17
2362 4128 7.454260 AGAGTATTTCTTTTGGTGTTCCATC 57.546 36.000 0.00 0.00 36.79 3.51
2365 4131 8.336801 AGTATTTCTTTTGGTGTTCCATCTAC 57.663 34.615 0.00 0.00 43.91 2.59
2368 4134 4.072131 TCTTTTGGTGTTCCATCTACAGC 58.928 43.478 0.00 0.00 43.91 4.40
2376 4142 5.648092 GGTGTTCCATCTACAGCTAAAACAT 59.352 40.000 0.00 0.00 40.04 2.71
2377 4143 6.151144 GGTGTTCCATCTACAGCTAAAACATT 59.849 38.462 0.00 0.00 40.04 2.71
2403 4169 6.401153 CCATTACGACTTCTACTTTGCTGTTC 60.401 42.308 0.00 0.00 0.00 3.18
2406 4172 5.116882 ACGACTTCTACTTTGCTGTTCTTT 58.883 37.500 0.00 0.00 0.00 2.52
2407 4173 6.278363 ACGACTTCTACTTTGCTGTTCTTTA 58.722 36.000 0.00 0.00 0.00 1.85
2408 4174 6.929606 ACGACTTCTACTTTGCTGTTCTTTAT 59.070 34.615 0.00 0.00 0.00 1.40
2409 4175 7.116519 ACGACTTCTACTTTGCTGTTCTTTATC 59.883 37.037 0.00 0.00 0.00 1.75
2410 4176 7.329717 CGACTTCTACTTTGCTGTTCTTTATCT 59.670 37.037 0.00 0.00 0.00 1.98
2427 4208 7.402054 TCTTTATCTCCTTAACTGCATTTCCA 58.598 34.615 0.00 0.00 0.00 3.53
2431 4212 6.121776 TCTCCTTAACTGCATTTCCAAGTA 57.878 37.500 0.00 0.00 0.00 2.24
2511 4292 2.941064 CCGCAGTGATGAGTCAAATCAT 59.059 45.455 0.00 0.00 42.62 2.45
2563 4344 6.820656 ACTCACAGATTATAGGTTTGCTTGAG 59.179 38.462 0.00 0.00 0.00 3.02
2572 4353 8.630054 TTATAGGTTTGCTTGAGCTTTCTTAA 57.370 30.769 4.44 0.00 42.66 1.85
2580 4361 5.186198 GCTTGAGCTTTCTTAACCTATCCA 58.814 41.667 0.00 0.00 38.21 3.41
2621 4418 2.625737 CCAGTGCAACACCTCTATCTG 58.374 52.381 0.00 0.00 41.43 2.90
2633 4433 8.633561 CAACACCTCTATCTGACATCAGTATTA 58.366 37.037 8.70 0.27 44.12 0.98
2634 4434 8.768501 ACACCTCTATCTGACATCAGTATTAA 57.231 34.615 8.70 0.00 44.12 1.40
2635 4435 9.373450 ACACCTCTATCTGACATCAGTATTAAT 57.627 33.333 8.70 0.00 44.12 1.40
2717 4517 2.267192 GGTCCCCTCTCAAGGTAAAGT 58.733 52.381 0.00 0.00 41.59 2.66
2721 4521 5.243981 GTCCCCTCTCAAGGTAAAGTTTAC 58.756 45.833 16.07 16.07 41.59 2.01
2763 4563 2.092753 TGCCTTCATCACATCTTCCTCC 60.093 50.000 0.00 0.00 0.00 4.30
2771 4571 5.901853 TCATCACATCTTCCTCCTGTAGATT 59.098 40.000 0.00 0.00 0.00 2.40
2797 4597 6.356556 AGGCCTTTTTGCATCTTTAACTTTT 58.643 32.000 0.00 0.00 0.00 2.27
2885 4705 2.231235 CCCACCTTCATTTTCCTTTCCG 59.769 50.000 0.00 0.00 0.00 4.30
2890 4710 3.005791 CCTTCATTTTCCTTTCCGTGCTT 59.994 43.478 0.00 0.00 0.00 3.91
3257 5083 6.789262 AGAATGTTACAATATTGAGCACAGC 58.211 36.000 22.16 14.59 0.00 4.40
3289 5115 9.529325 ACATCTAAAGTTTTTGTTTAAAGAGGC 57.471 29.630 0.00 0.00 0.00 4.70
3314 5140 4.429108 CAAGTAGAGACAAAGCTCTAGGC 58.571 47.826 0.00 0.00 45.43 3.93
3411 5238 4.706962 AGTGCTTGTCTTTTGTTCCTCTTT 59.293 37.500 0.00 0.00 0.00 2.52
3412 5239 5.185828 AGTGCTTGTCTTTTGTTCCTCTTTT 59.814 36.000 0.00 0.00 0.00 2.27
3413 5240 6.377146 AGTGCTTGTCTTTTGTTCCTCTTTTA 59.623 34.615 0.00 0.00 0.00 1.52
3414 5241 6.472486 GTGCTTGTCTTTTGTTCCTCTTTTAC 59.528 38.462 0.00 0.00 0.00 2.01
3417 5244 7.759886 GCTTGTCTTTTGTTCCTCTTTTACTTT 59.240 33.333 0.00 0.00 0.00 2.66
3418 5245 8.980143 TTGTCTTTTGTTCCTCTTTTACTTTG 57.020 30.769 0.00 0.00 0.00 2.77
3419 5246 8.117813 TGTCTTTTGTTCCTCTTTTACTTTGT 57.882 30.769 0.00 0.00 0.00 2.83
3421 5248 9.717892 GTCTTTTGTTCCTCTTTTACTTTGTAG 57.282 33.333 0.00 0.00 0.00 2.74
3422 5249 9.675464 TCTTTTGTTCCTCTTTTACTTTGTAGA 57.325 29.630 0.00 0.00 0.00 2.59
3485 5312 9.474920 CCATTACTTGAAAAACAAAATGCTCTA 57.525 29.630 0.00 0.00 36.33 2.43
3488 5315 5.985530 ACTTGAAAAACAAAATGCTCTAGGC 59.014 36.000 0.00 0.00 38.08 3.93
3529 5357 7.389330 TCTTTCAGATGCCGAACAAATTTACTA 59.611 33.333 0.00 0.00 0.00 1.82
3598 5426 9.950680 TGACTTAAGACAACAATTGAAATTCTC 57.049 29.630 13.59 0.00 0.00 2.87
3604 5432 8.511465 AGACAACAATTGAAATTCTCGAAATG 57.489 30.769 13.59 0.00 0.00 2.32
3634 5462 1.668826 ATTTAGCAGGACTGGTGGGA 58.331 50.000 13.79 0.87 41.87 4.37
3635 5463 0.690762 TTTAGCAGGACTGGTGGGAC 59.309 55.000 13.79 0.00 41.87 4.46
3819 5647 3.064931 CCGTGAAGTAGTTGAGGAAACC 58.935 50.000 0.00 0.00 39.85 3.27
3853 5681 9.113838 CTGCTAGTTCACTGGTAATTAAATCAT 57.886 33.333 0.00 0.00 0.00 2.45
3860 5688 8.628630 TCACTGGTAATTAAATCATCAACACA 57.371 30.769 0.00 0.00 0.00 3.72
3861 5689 8.729756 TCACTGGTAATTAAATCATCAACACAG 58.270 33.333 0.00 0.00 0.00 3.66
3894 5722 7.053498 TGCATTCCTAATTACTGCATCACTAA 58.947 34.615 0.00 0.00 37.88 2.24
3944 5772 3.248024 ACAAGACCACATCAGAAGGGTA 58.752 45.455 0.00 0.00 32.77 3.69
4013 5841 6.267471 ACTGCAGGATTTTCTTGGATTTTGTA 59.733 34.615 19.93 0.00 0.00 2.41
4184 6012 8.089625 TCAAGATGGTTATGAATCCACTAAGA 57.910 34.615 0.00 0.00 36.50 2.10
4199 6027 5.416013 TCCACTAAGATCTATGCAGTATCGG 59.584 44.000 0.00 0.00 0.00 4.18
4383 6212 1.871676 GAGGAACGCTTCGGAAAGTTT 59.128 47.619 11.04 0.00 34.79 2.66
4451 6288 7.246674 TCCAAACTACATCGATGCTTATTTC 57.753 36.000 25.11 0.00 0.00 2.17
4489 6326 7.455331 GCATGATTGCTTAAATTGTTCCTAC 57.545 36.000 0.00 0.00 45.77 3.18
4505 6342 5.958380 TGTTCCTACAGAATAGTCATGGAGT 59.042 40.000 0.00 0.00 36.69 3.85
4584 6421 3.244976 GTTTCGCAGGTGAAATTCATGG 58.755 45.455 10.78 0.00 39.80 3.66
4661 6498 6.828273 TCTTCAGAGTTCACATGGAAAGAAAA 59.172 34.615 0.00 0.00 37.23 2.29
4763 6615 2.050691 CCGGCATTGTTCTTTTTCGTG 58.949 47.619 0.00 0.00 0.00 4.35
4764 6616 2.050691 CGGCATTGTTCTTTTTCGTGG 58.949 47.619 0.00 0.00 0.00 4.94
4790 6658 1.768870 AGTGCAGGAGTGTAACCAGTT 59.231 47.619 0.00 0.00 37.80 3.16
4867 6735 8.045507 TGTACGACTAATCCCTATCTATCGAAT 58.954 37.037 0.00 0.00 32.83 3.34
4907 6775 9.498176 AGTAATTCTTGGAACTACGTTTGTAAT 57.502 29.630 0.00 0.00 0.00 1.89
4914 6782 6.561614 TGGAACTACGTTTGTAATTTTTGCA 58.438 32.000 0.00 0.00 0.00 4.08
4947 6815 2.879002 TGCCGTTCATTTTCAGCAAA 57.121 40.000 0.00 0.00 0.00 3.68
4949 6817 4.511617 TGCCGTTCATTTTCAGCAAATA 57.488 36.364 0.00 0.00 32.90 1.40
4988 6856 3.928375 CCTGCAAGAAAACAACATATGCC 59.072 43.478 1.58 0.00 34.07 4.40
5049 6917 1.903183 AGCTCCTTCTCGTTAAGGCTT 59.097 47.619 4.58 4.58 44.89 4.35
5127 7016 1.983972 AAGATCGTGAGTGCTCGTTC 58.016 50.000 0.00 0.00 32.72 3.95
5175 7064 1.204941 AGATGAGAGTGTGGGCGTAAC 59.795 52.381 0.00 0.00 0.00 2.50
5229 7118 1.772063 GAGGTGCGCGAGTTTGTTGT 61.772 55.000 12.10 0.00 0.00 3.32
5239 7128 2.673368 CGAGTTTGTTGTCTCCTATGGC 59.327 50.000 0.00 0.00 0.00 4.40
5268 7157 7.384115 GGATCGGTCGATTTGATTTCACTTATA 59.616 37.037 7.32 0.00 34.60 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.701040 CCAGGAAACCATGAACCATAAGG 59.299 47.826 0.00 0.00 42.21 2.69
7 8 3.955471 TCATCTCCAGGAAACCATGAAC 58.045 45.455 0.00 0.00 0.00 3.18
16 17 5.658190 GGAATGGATTTTTCATCTCCAGGAA 59.342 40.000 0.00 0.00 42.10 3.36
33 34 3.680490 TGTACAAATGCGAAGGAATGGA 58.320 40.909 0.00 0.00 0.00 3.41
34 35 4.096231 TCATGTACAAATGCGAAGGAATGG 59.904 41.667 0.00 0.00 0.00 3.16
38 39 3.937814 ACTCATGTACAAATGCGAAGGA 58.062 40.909 0.00 0.00 0.00 3.36
40 41 5.034554 ACAACTCATGTACAAATGCGAAG 57.965 39.130 0.00 0.00 41.63 3.79
121 122 3.609853 TCATGGTGGCAATCTCTGTTAC 58.390 45.455 0.00 0.00 0.00 2.50
135 136 1.357258 GCAGCAGACGACTCATGGTG 61.357 60.000 0.00 0.00 43.49 4.17
144 145 0.890542 ATTTGCCTTGCAGCAGACGA 60.891 50.000 0.58 0.00 45.13 4.20
149 150 0.320073 GCTCAATTTGCCTTGCAGCA 60.320 50.000 0.00 0.00 40.61 4.41
155 156 3.872771 CACTTTTGTGCTCAATTTGCCTT 59.127 39.130 1.43 0.00 44.07 4.35
156 157 3.460103 CACTTTTGTGCTCAATTTGCCT 58.540 40.909 1.43 0.00 44.07 4.75
186 1308 7.319646 ACACAACAATGCTTCTTGAAAGTAAA 58.680 30.769 2.02 0.00 0.00 2.01
187 1309 6.862209 ACACAACAATGCTTCTTGAAAGTAA 58.138 32.000 2.02 0.00 0.00 2.24
188 1310 6.449635 ACACAACAATGCTTCTTGAAAGTA 57.550 33.333 2.02 0.00 0.00 2.24
195 1317 4.432712 GGTGAAACACAACAATGCTTCTT 58.567 39.130 0.00 0.00 39.98 2.52
203 1325 2.414824 GCTTCACGGTGAAACACAACAA 60.415 45.455 22.60 0.00 39.98 2.83
209 1331 0.730265 GTGTGCTTCACGGTGAAACA 59.270 50.000 22.60 21.17 35.73 2.83
227 1350 3.832527 AGTGAAAAGCATAACTGTGGGT 58.167 40.909 0.00 0.00 0.00 4.51
239 1362 3.316308 TGCTTCCTGAGAAAGTGAAAAGC 59.684 43.478 0.00 0.00 0.00 3.51
248 1371 0.249699 TTCGCGTGCTTCCTGAGAAA 60.250 50.000 5.77 0.00 0.00 2.52
251 1374 1.784062 CTTTCGCGTGCTTCCTGAG 59.216 57.895 5.77 0.00 0.00 3.35
253 1376 2.174349 GCTTTCGCGTGCTTCCTG 59.826 61.111 5.77 0.00 0.00 3.86
264 1387 1.654220 CCCCACAGTTGTGCTTTCG 59.346 57.895 6.74 0.00 44.34 3.46
273 1396 1.152756 GTGAAGCACCCCCACAGTT 60.153 57.895 0.00 0.00 0.00 3.16
324 1449 3.370527 CCCAATCCACGACTGGTCTATTT 60.371 47.826 0.00 0.00 38.90 1.40
325 1450 2.170607 CCCAATCCACGACTGGTCTATT 59.829 50.000 0.00 0.00 38.90 1.73
326 1451 1.762957 CCCAATCCACGACTGGTCTAT 59.237 52.381 0.00 0.00 38.90 1.98
332 1457 1.378882 CCATGCCCAATCCACGACTG 61.379 60.000 0.00 0.00 0.00 3.51
343 1468 1.485480 CATAAATTGTGCCCATGCCCA 59.515 47.619 0.00 0.00 36.33 5.36
356 1481 3.550820 TGGCGTACCATGAGCATAAATT 58.449 40.909 0.00 0.00 42.67 1.82
378 1504 5.824097 ACCAATAATATAACCACGTTGGGTC 59.176 40.000 0.00 0.00 43.37 4.46
387 1513 9.796180 GTATGTAACCCACCAATAATATAACCA 57.204 33.333 0.00 0.00 0.00 3.67
415 1543 5.869888 GCACAGAGCTTACATACAACTACTT 59.130 40.000 0.00 0.00 41.15 2.24
445 1573 5.340027 GGGAATTGATTGTTAGAAGGAGGGA 60.340 44.000 0.00 0.00 0.00 4.20
466 1595 8.656806 CCACTAAGATGTTAATATGGTTAGGGA 58.343 37.037 11.77 0.00 0.00 4.20
496 1625 5.871396 AATTCCATATGTAGTGGAGACGT 57.129 39.130 1.24 0.00 45.85 4.34
555 1684 4.074854 TGGGTATCCATCGGGCAA 57.925 55.556 0.00 0.00 38.32 4.52
565 1694 4.332828 GGTATTAGTGCCCAATGGGTATC 58.667 47.826 21.02 10.23 46.51 2.24
601 1731 5.508153 CGACCCATCGGATAGATATTCATCC 60.508 48.000 6.50 6.50 44.99 3.51
622 1752 6.325596 GGATAAAATCCTACGTATACCCGAC 58.674 44.000 0.00 0.00 46.19 4.79
651 1781 7.155442 TCCCATACCCATACATATGTTTTCA 57.845 36.000 14.77 0.00 31.82 2.69
652 1782 8.650143 AATCCCATACCCATACATATGTTTTC 57.350 34.615 14.77 0.00 31.82 2.29
708 1840 5.076873 AGCATGGGCAACTTAAGTTTAAGA 58.923 37.500 18.25 4.00 41.63 2.10
727 1860 1.969862 GCAGGTTGAGCCAAAGCAT 59.030 52.632 1.57 0.00 43.56 3.79
778 1959 8.635328 ACAATGGAATAGAAAACGGTAAAGTTT 58.365 29.630 0.00 0.00 45.21 2.66
779 1960 8.173542 ACAATGGAATAGAAAACGGTAAAGTT 57.826 30.769 0.00 0.00 35.59 2.66
780 1961 7.754851 ACAATGGAATAGAAAACGGTAAAGT 57.245 32.000 0.00 0.00 0.00 2.66
781 1962 9.471084 AAAACAATGGAATAGAAAACGGTAAAG 57.529 29.630 0.00 0.00 0.00 1.85
782 1963 9.250624 CAAAACAATGGAATAGAAAACGGTAAA 57.749 29.630 0.00 0.00 0.00 2.01
783 1964 7.868415 CCAAAACAATGGAATAGAAAACGGTAA 59.132 33.333 0.00 0.00 43.54 2.85
784 1965 7.230913 TCCAAAACAATGGAATAGAAAACGGTA 59.769 33.333 0.00 0.00 46.36 4.02
785 1966 6.041069 TCCAAAACAATGGAATAGAAAACGGT 59.959 34.615 0.00 0.00 46.36 4.83
786 1967 6.451393 TCCAAAACAATGGAATAGAAAACGG 58.549 36.000 0.00 0.00 46.36 4.44
1621 2808 2.892425 CAGCGGAATCAGACGGCC 60.892 66.667 0.00 0.00 34.87 6.13
1622 2809 3.567797 GCAGCGGAATCAGACGGC 61.568 66.667 0.00 0.00 0.00 5.68
1623 2810 2.125552 TGCAGCGGAATCAGACGG 60.126 61.111 0.00 0.00 0.00 4.79
1626 2813 1.065926 ACAATCTGCAGCGGAATCAGA 60.066 47.619 8.35 0.00 40.62 3.27
1628 2815 1.089112 CACAATCTGCAGCGGAATCA 58.911 50.000 8.35 0.00 0.00 2.57
1644 2831 2.307496 ACCATGGGAAGAATTGCACA 57.693 45.000 18.09 0.00 38.65 4.57
1664 2852 3.067106 CAGCAACACCGAGTTAGTCAAT 58.933 45.455 0.00 0.00 38.74 2.57
1667 2855 0.790814 GCAGCAACACCGAGTTAGTC 59.209 55.000 0.00 0.00 38.74 2.59
1676 2864 0.594796 CTTCGTTTGGCAGCAACACC 60.595 55.000 0.00 0.00 0.00 4.16
1700 2888 1.002087 AGGACGGATCAAACCTCACAC 59.998 52.381 0.00 0.00 0.00 3.82
1758 2946 1.609555 CAGACCACCTCGCCTATAGAC 59.390 57.143 0.00 0.00 0.00 2.59
1846 3043 4.957954 AGCCTTTGATTCCATATCTGCAAA 59.042 37.500 0.00 0.00 0.00 3.68
1925 3122 2.512692 TGGCTTGCCAGAATATGTGT 57.487 45.000 10.65 0.00 0.00 3.72
1926 3123 4.395959 AAATGGCTTGCCAGAATATGTG 57.604 40.909 19.53 0.00 0.00 3.21
1929 3126 5.047519 GCAGATAAATGGCTTGCCAGAATAT 60.048 40.000 19.53 15.72 0.00 1.28
1971 3191 4.194640 TCATCTCTGCCAAAATCTAGTGC 58.805 43.478 0.00 0.00 0.00 4.40
1976 3196 6.182627 TGTGTATTCATCTCTGCCAAAATCT 58.817 36.000 0.00 0.00 0.00 2.40
2018 3242 9.026121 AGACAACTAATCAAGTGTGTATAGACT 57.974 33.333 1.30 0.00 38.88 3.24
2019 3243 9.291664 GAGACAACTAATCAAGTGTGTATAGAC 57.708 37.037 0.00 0.00 38.88 2.59
2020 3244 8.182227 CGAGACAACTAATCAAGTGTGTATAGA 58.818 37.037 0.00 0.00 38.88 1.98
2021 3245 7.432545 CCGAGACAACTAATCAAGTGTGTATAG 59.567 40.741 0.00 0.00 38.88 1.31
2022 3246 7.255569 CCGAGACAACTAATCAAGTGTGTATA 58.744 38.462 0.00 0.00 38.88 1.47
2023 3247 6.100004 CCGAGACAACTAATCAAGTGTGTAT 58.900 40.000 0.00 0.00 38.88 2.29
2024 3248 5.466819 CCGAGACAACTAATCAAGTGTGTA 58.533 41.667 0.00 0.00 38.88 2.90
2025 3249 4.307432 CCGAGACAACTAATCAAGTGTGT 58.693 43.478 0.00 0.00 38.88 3.72
2026 3250 3.123621 GCCGAGACAACTAATCAAGTGTG 59.876 47.826 0.00 0.00 38.88 3.82
2027 3251 3.006967 AGCCGAGACAACTAATCAAGTGT 59.993 43.478 0.00 0.00 38.88 3.55
2028 3252 3.589988 AGCCGAGACAACTAATCAAGTG 58.410 45.455 0.00 0.00 38.88 3.16
2029 3253 3.511934 AGAGCCGAGACAACTAATCAAGT 59.488 43.478 0.00 0.00 41.49 3.16
2052 3338 1.327303 TGTCAGTCCCAATTTGGCAC 58.673 50.000 10.10 5.58 35.79 5.01
2064 3350 4.355543 TTGCACAGTTTTCTTGTCAGTC 57.644 40.909 0.00 0.00 0.00 3.51
2089 3375 2.941064 AGTCATCATGAAACGCTCCATG 59.059 45.455 0.00 0.00 40.97 3.66
2090 3376 3.272574 AGTCATCATGAAACGCTCCAT 57.727 42.857 0.00 0.00 0.00 3.41
2123 3410 7.336931 ACTTAGCATGGAAGAAACATTATTCGT 59.663 33.333 0.00 0.00 34.46 3.85
2181 3659 4.984161 CCTGCAACATCTTTTTCGAAACAT 59.016 37.500 10.79 0.14 0.00 2.71
2257 3736 3.073062 ACTTGTGGCTAACTCAGGTTGAT 59.927 43.478 0.00 0.00 36.92 2.57
2259 3738 2.851195 ACTTGTGGCTAACTCAGGTTG 58.149 47.619 0.00 0.00 36.92 3.77
2263 3742 7.379529 CACAAATAAAACTTGTGGCTAACTCAG 59.620 37.037 7.63 0.00 46.45 3.35
2302 4068 5.677091 GCGCAAGTTCAGATGTAAATGGAAT 60.677 40.000 0.30 0.00 41.68 3.01
2307 4073 3.000041 TCGCGCAAGTTCAGATGTAAAT 59.000 40.909 8.75 0.00 41.68 1.40
2324 4090 7.283254 AGAAATACTCTATATTGCAATCGCG 57.717 36.000 16.86 0.00 34.52 5.87
2362 4128 7.277981 AGTCGTAATGGAATGTTTTAGCTGTAG 59.722 37.037 0.00 0.00 0.00 2.74
2365 4131 6.422776 AGTCGTAATGGAATGTTTTAGCTG 57.577 37.500 0.00 0.00 0.00 4.24
2368 4134 9.367444 AGTAGAAGTCGTAATGGAATGTTTTAG 57.633 33.333 0.00 0.00 0.00 1.85
2376 4142 5.637810 CAGCAAAGTAGAAGTCGTAATGGAA 59.362 40.000 0.00 0.00 0.00 3.53
2377 4143 5.168569 CAGCAAAGTAGAAGTCGTAATGGA 58.831 41.667 0.00 0.00 0.00 3.41
2403 4169 7.630242 TGGAAATGCAGTTAAGGAGATAAAG 57.370 36.000 0.00 0.00 0.00 1.85
2406 4172 6.721318 ACTTGGAAATGCAGTTAAGGAGATA 58.279 36.000 12.55 0.00 0.00 1.98
2407 4173 5.574188 ACTTGGAAATGCAGTTAAGGAGAT 58.426 37.500 12.55 0.00 0.00 2.75
2408 4174 4.985538 ACTTGGAAATGCAGTTAAGGAGA 58.014 39.130 12.55 0.00 0.00 3.71
2409 4175 5.940470 AGTACTTGGAAATGCAGTTAAGGAG 59.060 40.000 12.55 6.09 0.00 3.69
2410 4176 5.876357 AGTACTTGGAAATGCAGTTAAGGA 58.124 37.500 12.55 2.83 0.00 3.36
2427 4208 9.696572 TGACCAAGAGTATGAATACTAGTACTT 57.303 33.333 4.31 1.23 43.27 2.24
2431 4212 7.349412 GGTGACCAAGAGTATGAATACTAGT 57.651 40.000 0.00 0.00 43.27 2.57
2502 4283 6.090088 GTGAGACACAGTACTCATGATTTGAC 59.910 42.308 10.07 0.00 43.46 3.18
2511 4292 5.791336 AATGAAGTGAGACACAGTACTCA 57.209 39.130 0.00 5.76 40.22 3.41
2563 4344 9.589111 GTAGCTATATGGATAGGTTAAGAAAGC 57.411 37.037 0.00 0.00 42.49 3.51
2572 4353 5.905088 ACAGGTGTAGCTATATGGATAGGT 58.095 41.667 0.00 2.56 45.97 3.08
2600 4397 1.556911 AGATAGAGGTGTTGCACTGGG 59.443 52.381 0.00 0.00 34.40 4.45
2633 4433 9.528018 CAAATGTCCTGTTGTTTGTAAGTTATT 57.472 29.630 0.00 0.00 0.00 1.40
2634 4434 8.691797 ACAAATGTCCTGTTGTTTGTAAGTTAT 58.308 29.630 0.94 0.00 41.47 1.89
2635 4435 8.057536 ACAAATGTCCTGTTGTTTGTAAGTTA 57.942 30.769 0.94 0.00 41.47 2.24
2721 4521 8.189119 AGGCATCTAAGATTCTAACTTCTAGG 57.811 38.462 0.00 0.00 0.00 3.02
2763 4563 5.643379 TGCAAAAAGGCCTTAATCTACAG 57.357 39.130 20.84 4.45 0.00 2.74
2771 4571 6.664428 AGTTAAAGATGCAAAAAGGCCTTA 57.336 33.333 20.84 2.11 0.00 2.69
2963 4783 4.250116 AGCAGACAAAGTACTGAGACAG 57.750 45.455 0.00 0.00 36.38 3.51
3288 5114 1.003696 AGCTTTGTCTCTACTTGGGGC 59.996 52.381 0.00 0.00 0.00 5.80
3289 5115 2.569404 AGAGCTTTGTCTCTACTTGGGG 59.431 50.000 0.00 0.00 41.35 4.96
3314 5140 2.073816 CAGCCTACCAAAGTTACACGG 58.926 52.381 0.00 0.00 0.00 4.94
3428 5255 6.968904 CCCAATTCTCATTGAACGAAACTATG 59.031 38.462 0.00 0.00 42.35 2.23
3437 5264 2.094026 GTGGCCCCAATTCTCATTGAAC 60.094 50.000 0.00 0.00 42.35 3.18
3439 5266 1.619432 GGTGGCCCCAATTCTCATTGA 60.619 52.381 0.00 0.00 42.35 2.57
3485 5312 6.299141 TGAAAGAAAAAGAGTGACTATGCCT 58.701 36.000 0.00 0.00 0.00 4.75
3604 5432 9.740710 ACCAGTCCTGCTAAATAAAATATATCC 57.259 33.333 0.00 0.00 0.00 2.59
3634 5462 1.105167 TCGACCACTCGAACCACAGT 61.105 55.000 0.00 0.00 46.04 3.55
3635 5463 1.658114 TCGACCACTCGAACCACAG 59.342 57.895 0.00 0.00 46.04 3.66
3699 5527 1.691196 TTCCAACTTCTTGTGGCTGG 58.309 50.000 0.00 0.00 0.00 4.85
3819 5647 1.546476 AGTGAACTAGCAGGAACTCCG 59.454 52.381 0.00 0.00 42.08 4.63
3853 5681 1.180907 TGCAAGGCAAACTGTGTTGA 58.819 45.000 6.82 0.00 34.76 3.18
3860 5688 5.716703 AGTAATTAGGAATGCAAGGCAAACT 59.283 36.000 0.00 0.00 43.62 2.66
3861 5689 5.807011 CAGTAATTAGGAATGCAAGGCAAAC 59.193 40.000 0.00 0.00 43.62 2.93
3923 5751 2.057922 ACCCTTCTGATGTGGTCTTGT 58.942 47.619 0.00 0.00 0.00 3.16
3924 5752 2.867109 ACCCTTCTGATGTGGTCTTG 57.133 50.000 0.00 0.00 0.00 3.02
3925 5753 3.521727 AGTACCCTTCTGATGTGGTCTT 58.478 45.455 6.88 0.00 32.27 3.01
3926 5754 3.191888 AGTACCCTTCTGATGTGGTCT 57.808 47.619 6.88 3.83 32.27 3.85
3944 5772 6.868622 TGGTAATTACAAACAACTGCAAAGT 58.131 32.000 17.16 0.00 0.00 2.66
4184 6012 3.230976 TCACCACCGATACTGCATAGAT 58.769 45.455 0.00 0.00 0.00 1.98
4383 6212 4.034626 CACACTTACATCGGTTTGTTCACA 59.965 41.667 0.00 0.00 0.00 3.58
4481 6318 5.958380 ACTCCATGACTATTCTGTAGGAACA 59.042 40.000 0.00 0.00 36.70 3.18
4489 6326 3.801050 CGCAAGACTCCATGACTATTCTG 59.199 47.826 0.00 0.00 43.02 3.02
4505 6342 1.269448 GATTGTTCAAAGGCCGCAAGA 59.731 47.619 0.00 0.00 43.02 3.02
4584 6421 2.083774 TGGGCACAATGAGAACGATTC 58.916 47.619 0.00 0.00 0.00 2.52
4763 6615 2.111878 ACTCCTGCACTGCACACC 59.888 61.111 0.00 0.00 33.79 4.16
4764 6616 0.249868 TACACTCCTGCACTGCACAC 60.250 55.000 0.00 0.00 33.79 3.82
4790 6658 9.990360 GGATTCCAGGAACAAAAGTAAATAAAA 57.010 29.630 3.18 0.00 0.00 1.52
4802 6670 3.591527 ACATACCAGGATTCCAGGAACAA 59.408 43.478 20.21 3.90 34.08 2.83
4815 6683 0.746063 TTACCGCGGTACATACCAGG 59.254 55.000 36.56 14.66 46.80 4.45
4867 6735 9.344772 TCCAAGAATTACTAGCTTGTTTTGTTA 57.655 29.630 6.03 0.00 37.82 2.41
4907 6775 1.827344 TGTCACCACCATGTGCAAAAA 59.173 42.857 0.00 0.00 36.17 1.94
4914 6782 1.675310 CGGCATGTCACCACCATGT 60.675 57.895 0.00 0.00 41.38 3.21
4947 6815 3.769844 CAGGTGTACCAGACTGGAAGTAT 59.230 47.826 28.56 7.66 43.95 2.12
4949 6817 1.971357 CAGGTGTACCAGACTGGAAGT 59.029 52.381 28.56 8.45 46.01 3.01
4988 6856 7.250032 TCATCAATCCATCCCTACTATGAAG 57.750 40.000 0.00 0.00 0.00 3.02
5049 6917 6.870971 AAACTTAACGAACTAAATGAGCCA 57.129 33.333 0.00 0.00 0.00 4.75
5127 7016 5.412594 AGGCTACAACACATCATAGTTTGTG 59.587 40.000 1.74 1.74 46.76 3.33
5175 7064 4.460382 ACCATGCATCTTCCTGTGTAAAAG 59.540 41.667 0.00 0.00 0.00 2.27
5239 7128 2.533266 ATCAAATCGACCGATCCCTG 57.467 50.000 5.32 4.50 33.08 4.45
5268 7157 3.782656 ATTTTCGTGGTACCTCAACCT 57.217 42.857 14.36 0.00 40.44 3.50
5351 7240 5.813080 AACAAACAAGCTAACGAGTTTCT 57.187 34.783 0.00 0.00 32.34 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.