Multiple sequence alignment - TraesCS1D01G046800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G046800 chr1D 100.000 2549 0 0 1 2549 26485567 26488115 0 4708
1 TraesCS1D01G046800 chr6D 97.137 1991 50 7 562 2549 109963204 109965190 0 3354
2 TraesCS1D01G046800 chr6D 96.689 1963 56 5 591 2549 52521727 52519770 0 3256
3 TraesCS1D01G046800 chr5D 96.735 1991 57 6 563 2549 336262616 336264602 0 3310
4 TraesCS1D01G046800 chr7D 95.966 1983 69 5 571 2549 574727119 574725144 0 3208
5 TraesCS1D01G046800 chr2D 95.628 1990 73 7 569 2549 238958883 238960867 0 3181
6 TraesCS1D01G046800 chr2D 95.078 1991 84 10 569 2549 331197176 331199162 0 3121
7 TraesCS1D01G046800 chr3A 95.070 1988 87 9 569 2549 735555338 735557321 0 3118
8 TraesCS1D01G046800 chr7A 94.822 1989 91 9 570 2549 701581939 701583924 0 3092
9 TraesCS1D01G046800 chr6B 94.816 1987 89 10 572 2549 660437743 660435762 0 3086


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G046800 chr1D 26485567 26488115 2548 False 4708 4708 100.000 1 2549 1 chr1D.!!$F1 2548
1 TraesCS1D01G046800 chr6D 109963204 109965190 1986 False 3354 3354 97.137 562 2549 1 chr6D.!!$F1 1987
2 TraesCS1D01G046800 chr6D 52519770 52521727 1957 True 3256 3256 96.689 591 2549 1 chr6D.!!$R1 1958
3 TraesCS1D01G046800 chr5D 336262616 336264602 1986 False 3310 3310 96.735 563 2549 1 chr5D.!!$F1 1986
4 TraesCS1D01G046800 chr7D 574725144 574727119 1975 True 3208 3208 95.966 571 2549 1 chr7D.!!$R1 1978
5 TraesCS1D01G046800 chr2D 238958883 238960867 1984 False 3181 3181 95.628 569 2549 1 chr2D.!!$F1 1980
6 TraesCS1D01G046800 chr2D 331197176 331199162 1986 False 3121 3121 95.078 569 2549 1 chr2D.!!$F2 1980
7 TraesCS1D01G046800 chr3A 735555338 735557321 1983 False 3118 3118 95.070 569 2549 1 chr3A.!!$F1 1980
8 TraesCS1D01G046800 chr7A 701581939 701583924 1985 False 3092 3092 94.822 570 2549 1 chr7A.!!$F1 1979
9 TraesCS1D01G046800 chr6B 660435762 660437743 1981 True 3086 3086 94.816 572 2549 1 chr6B.!!$R1 1977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 439 0.036732 TTGACATGCAGACCCCACTC 59.963 55.0 0.0 0.0 0.0 3.51 F
444 445 0.114364 TGCAGACCCCACTCACTCTA 59.886 55.0 0.0 0.0 0.0 2.43 F
536 537 0.178068 AAGTTGTGCTCACCGTGTCT 59.822 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1322 0.171903 GCATGCGCAACCATTCTTCT 59.828 50.000 17.11 0.00 38.36 2.85 R
1387 1401 0.529833 GCTAGCTCTCTGTCAGTGCA 59.470 55.000 7.70 0.00 43.07 4.57 R
2386 2412 3.090790 TCATGTGGCAGTGCAAACATAT 58.909 40.909 26.21 13.59 35.98 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.398549 TGTCAATTAAGAAAAGCGACCG 57.601 40.909 0.00 0.00 0.00 4.79
24 25 3.187637 TGTCAATTAAGAAAAGCGACCGG 59.812 43.478 0.00 0.00 0.00 5.28
25 26 3.187842 GTCAATTAAGAAAAGCGACCGGT 59.812 43.478 6.92 6.92 0.00 5.28
26 27 3.434299 TCAATTAAGAAAAGCGACCGGTC 59.566 43.478 25.28 25.28 0.00 4.79
35 36 4.813526 CGACCGGTCGCTCGTCAG 62.814 72.222 40.78 15.47 46.50 3.51
39 40 4.717629 CGGTCGCTCGTCAGCCAA 62.718 66.667 0.00 0.00 43.56 4.52
40 41 2.357034 GGTCGCTCGTCAGCCAAA 60.357 61.111 0.00 0.00 43.56 3.28
41 42 2.383527 GGTCGCTCGTCAGCCAAAG 61.384 63.158 0.00 0.00 43.56 2.77
42 43 2.738521 TCGCTCGTCAGCCAAAGC 60.739 61.111 0.00 0.00 43.56 3.51
65 66 3.345737 CGCTCCATCGCTAGACAAA 57.654 52.632 0.00 0.00 0.00 2.83
66 67 1.203928 CGCTCCATCGCTAGACAAAG 58.796 55.000 0.00 0.00 0.00 2.77
67 68 1.469940 CGCTCCATCGCTAGACAAAGT 60.470 52.381 0.00 0.00 0.00 2.66
68 69 1.929836 GCTCCATCGCTAGACAAAGTG 59.070 52.381 0.00 0.00 0.00 3.16
69 70 2.544685 CTCCATCGCTAGACAAAGTGG 58.455 52.381 0.00 0.00 0.00 4.00
70 71 1.899814 TCCATCGCTAGACAAAGTGGT 59.100 47.619 0.00 0.00 0.00 4.16
71 72 2.094182 TCCATCGCTAGACAAAGTGGTC 60.094 50.000 0.00 0.00 38.08 4.02
72 73 2.353704 CCATCGCTAGACAAAGTGGTCA 60.354 50.000 0.00 0.00 40.29 4.02
73 74 3.525537 CATCGCTAGACAAAGTGGTCAT 58.474 45.455 0.00 0.00 40.29 3.06
74 75 2.959516 TCGCTAGACAAAGTGGTCATG 58.040 47.619 0.00 0.00 40.29 3.07
75 76 1.394917 CGCTAGACAAAGTGGTCATGC 59.605 52.381 0.00 0.00 40.29 4.06
76 77 2.426522 GCTAGACAAAGTGGTCATGCA 58.573 47.619 0.00 0.00 40.29 3.96
77 78 3.012518 GCTAGACAAAGTGGTCATGCAT 58.987 45.455 0.00 0.00 40.29 3.96
78 79 3.064545 GCTAGACAAAGTGGTCATGCATC 59.935 47.826 0.00 0.00 40.29 3.91
79 80 3.144657 AGACAAAGTGGTCATGCATCA 57.855 42.857 0.00 0.00 40.29 3.07
80 81 3.489355 AGACAAAGTGGTCATGCATCAA 58.511 40.909 0.00 0.00 40.29 2.57
81 82 3.254166 AGACAAAGTGGTCATGCATCAAC 59.746 43.478 0.00 0.00 40.29 3.18
82 83 3.225104 ACAAAGTGGTCATGCATCAACT 58.775 40.909 0.00 0.00 0.00 3.16
83 84 3.254166 ACAAAGTGGTCATGCATCAACTC 59.746 43.478 0.00 0.00 0.00 3.01
84 85 2.119801 AGTGGTCATGCATCAACTCC 57.880 50.000 0.00 0.00 0.00 3.85
85 86 1.352017 AGTGGTCATGCATCAACTCCA 59.648 47.619 0.00 0.00 0.00 3.86
86 87 1.741706 GTGGTCATGCATCAACTCCAG 59.258 52.381 0.00 0.00 0.00 3.86
87 88 1.629861 TGGTCATGCATCAACTCCAGA 59.370 47.619 0.00 0.00 0.00 3.86
88 89 2.240414 TGGTCATGCATCAACTCCAGAT 59.760 45.455 0.00 0.00 0.00 2.90
89 90 3.455543 TGGTCATGCATCAACTCCAGATA 59.544 43.478 0.00 0.00 0.00 1.98
90 91 4.103627 TGGTCATGCATCAACTCCAGATAT 59.896 41.667 0.00 0.00 0.00 1.63
91 92 4.694509 GGTCATGCATCAACTCCAGATATC 59.305 45.833 0.00 0.00 0.00 1.63
92 93 5.512749 GGTCATGCATCAACTCCAGATATCT 60.513 44.000 0.00 0.00 0.00 1.98
93 94 5.638657 GTCATGCATCAACTCCAGATATCTC 59.361 44.000 1.03 0.00 0.00 2.75
94 95 4.613925 TGCATCAACTCCAGATATCTCC 57.386 45.455 1.03 0.00 0.00 3.71
95 96 4.229639 TGCATCAACTCCAGATATCTCCT 58.770 43.478 1.03 0.00 0.00 3.69
96 97 5.397360 TGCATCAACTCCAGATATCTCCTA 58.603 41.667 1.03 0.00 0.00 2.94
97 98 6.021672 TGCATCAACTCCAGATATCTCCTAT 58.978 40.000 1.03 0.00 0.00 2.57
98 99 6.499699 TGCATCAACTCCAGATATCTCCTATT 59.500 38.462 1.03 0.00 0.00 1.73
99 100 7.041107 GCATCAACTCCAGATATCTCCTATTC 58.959 42.308 1.03 0.00 0.00 1.75
100 101 7.555087 CATCAACTCCAGATATCTCCTATTCC 58.445 42.308 1.03 0.00 0.00 3.01
101 102 6.019748 TCAACTCCAGATATCTCCTATTCCC 58.980 44.000 1.03 0.00 0.00 3.97
102 103 4.605183 ACTCCAGATATCTCCTATTCCCG 58.395 47.826 1.03 0.00 0.00 5.14
103 104 3.366396 TCCAGATATCTCCTATTCCCGC 58.634 50.000 1.03 0.00 0.00 6.13
104 105 3.011821 TCCAGATATCTCCTATTCCCGCT 59.988 47.826 1.03 0.00 0.00 5.52
105 106 3.772025 CCAGATATCTCCTATTCCCGCTT 59.228 47.826 1.03 0.00 0.00 4.68
106 107 4.142049 CCAGATATCTCCTATTCCCGCTTC 60.142 50.000 1.03 0.00 0.00 3.86
107 108 4.027437 AGATATCTCCTATTCCCGCTTCC 58.973 47.826 0.00 0.00 0.00 3.46
108 109 2.103153 ATCTCCTATTCCCGCTTCCA 57.897 50.000 0.00 0.00 0.00 3.53
109 110 1.120530 TCTCCTATTCCCGCTTCCAC 58.879 55.000 0.00 0.00 0.00 4.02
110 111 1.123928 CTCCTATTCCCGCTTCCACT 58.876 55.000 0.00 0.00 0.00 4.00
111 112 1.069358 CTCCTATTCCCGCTTCCACTC 59.931 57.143 0.00 0.00 0.00 3.51
112 113 1.123928 CCTATTCCCGCTTCCACTCT 58.876 55.000 0.00 0.00 0.00 3.24
113 114 1.486726 CCTATTCCCGCTTCCACTCTT 59.513 52.381 0.00 0.00 0.00 2.85
114 115 2.483889 CCTATTCCCGCTTCCACTCTTC 60.484 54.545 0.00 0.00 0.00 2.87
115 116 1.280457 ATTCCCGCTTCCACTCTTCT 58.720 50.000 0.00 0.00 0.00 2.85
116 117 1.056660 TTCCCGCTTCCACTCTTCTT 58.943 50.000 0.00 0.00 0.00 2.52
117 118 1.056660 TCCCGCTTCCACTCTTCTTT 58.943 50.000 0.00 0.00 0.00 2.52
118 119 1.002087 TCCCGCTTCCACTCTTCTTTC 59.998 52.381 0.00 0.00 0.00 2.62
119 120 1.002544 CCCGCTTCCACTCTTCTTTCT 59.997 52.381 0.00 0.00 0.00 2.52
120 121 2.342179 CCGCTTCCACTCTTCTTTCTC 58.658 52.381 0.00 0.00 0.00 2.87
121 122 2.028567 CCGCTTCCACTCTTCTTTCTCT 60.029 50.000 0.00 0.00 0.00 3.10
122 123 3.249917 CGCTTCCACTCTTCTTTCTCTC 58.750 50.000 0.00 0.00 0.00 3.20
123 124 3.305676 CGCTTCCACTCTTCTTTCTCTCA 60.306 47.826 0.00 0.00 0.00 3.27
124 125 4.244862 GCTTCCACTCTTCTTTCTCTCAG 58.755 47.826 0.00 0.00 0.00 3.35
125 126 4.262420 GCTTCCACTCTTCTTTCTCTCAGT 60.262 45.833 0.00 0.00 0.00 3.41
126 127 5.741673 GCTTCCACTCTTCTTTCTCTCAGTT 60.742 44.000 0.00 0.00 0.00 3.16
127 128 5.461032 TCCACTCTTCTTTCTCTCAGTTC 57.539 43.478 0.00 0.00 0.00 3.01
128 129 5.144100 TCCACTCTTCTTTCTCTCAGTTCT 58.856 41.667 0.00 0.00 0.00 3.01
129 130 5.010516 TCCACTCTTCTTTCTCTCAGTTCTG 59.989 44.000 0.00 0.00 0.00 3.02
130 131 4.685628 CACTCTTCTTTCTCTCAGTTCTGC 59.314 45.833 0.00 0.00 0.00 4.26
131 132 4.244862 CTCTTCTTTCTCTCAGTTCTGCC 58.755 47.826 0.00 0.00 0.00 4.85
132 133 2.732412 TCTTTCTCTCAGTTCTGCCG 57.268 50.000 0.00 0.00 0.00 5.69
133 134 1.074752 CTTTCTCTCAGTTCTGCCGC 58.925 55.000 0.00 0.00 0.00 6.53
134 135 0.681733 TTTCTCTCAGTTCTGCCGCT 59.318 50.000 0.00 0.00 0.00 5.52
135 136 1.545841 TTCTCTCAGTTCTGCCGCTA 58.454 50.000 0.00 0.00 0.00 4.26
136 137 1.769026 TCTCTCAGTTCTGCCGCTAT 58.231 50.000 0.00 0.00 0.00 2.97
137 138 1.678627 TCTCTCAGTTCTGCCGCTATC 59.321 52.381 0.00 0.00 0.00 2.08
138 139 1.680735 CTCTCAGTTCTGCCGCTATCT 59.319 52.381 0.00 0.00 0.00 1.98
139 140 1.678627 TCTCAGTTCTGCCGCTATCTC 59.321 52.381 0.00 0.00 0.00 2.75
140 141 0.747255 TCAGTTCTGCCGCTATCTCC 59.253 55.000 0.00 0.00 0.00 3.71
141 142 0.461548 CAGTTCTGCCGCTATCTCCA 59.538 55.000 0.00 0.00 0.00 3.86
142 143 0.461961 AGTTCTGCCGCTATCTCCAC 59.538 55.000 0.00 0.00 0.00 4.02
143 144 0.461961 GTTCTGCCGCTATCTCCACT 59.538 55.000 0.00 0.00 0.00 4.00
144 145 1.134670 GTTCTGCCGCTATCTCCACTT 60.135 52.381 0.00 0.00 0.00 3.16
145 146 2.067365 TCTGCCGCTATCTCCACTTA 57.933 50.000 0.00 0.00 0.00 2.24
146 147 2.598565 TCTGCCGCTATCTCCACTTAT 58.401 47.619 0.00 0.00 0.00 1.73
147 148 2.965831 TCTGCCGCTATCTCCACTTATT 59.034 45.455 0.00 0.00 0.00 1.40
148 149 3.388024 TCTGCCGCTATCTCCACTTATTT 59.612 43.478 0.00 0.00 0.00 1.40
149 150 3.466836 TGCCGCTATCTCCACTTATTTG 58.533 45.455 0.00 0.00 0.00 2.32
150 151 3.133901 TGCCGCTATCTCCACTTATTTGA 59.866 43.478 0.00 0.00 0.00 2.69
151 152 4.202357 TGCCGCTATCTCCACTTATTTGAT 60.202 41.667 0.00 0.00 0.00 2.57
152 153 4.390297 GCCGCTATCTCCACTTATTTGATC 59.610 45.833 0.00 0.00 0.00 2.92
153 154 5.788450 CCGCTATCTCCACTTATTTGATCT 58.212 41.667 0.00 0.00 0.00 2.75
154 155 6.572509 GCCGCTATCTCCACTTATTTGATCTA 60.573 42.308 0.00 0.00 0.00 1.98
155 156 6.809196 CCGCTATCTCCACTTATTTGATCTAC 59.191 42.308 0.00 0.00 0.00 2.59
156 157 6.809196 CGCTATCTCCACTTATTTGATCTACC 59.191 42.308 0.00 0.00 0.00 3.18
157 158 7.523873 CGCTATCTCCACTTATTTGATCTACCA 60.524 40.741 0.00 0.00 0.00 3.25
158 159 7.816995 GCTATCTCCACTTATTTGATCTACCAG 59.183 40.741 0.00 0.00 0.00 4.00
159 160 6.485830 TCTCCACTTATTTGATCTACCAGG 57.514 41.667 0.00 0.00 0.00 4.45
160 161 5.036117 TCCACTTATTTGATCTACCAGGC 57.964 43.478 0.00 0.00 0.00 4.85
161 162 4.721776 TCCACTTATTTGATCTACCAGGCT 59.278 41.667 0.00 0.00 0.00 4.58
162 163 5.903010 TCCACTTATTTGATCTACCAGGCTA 59.097 40.000 0.00 0.00 0.00 3.93
163 164 6.042093 TCCACTTATTTGATCTACCAGGCTAG 59.958 42.308 0.00 0.00 0.00 3.42
164 165 6.183361 CCACTTATTTGATCTACCAGGCTAGT 60.183 42.308 0.00 0.00 0.00 2.57
165 166 6.703607 CACTTATTTGATCTACCAGGCTAGTG 59.296 42.308 0.00 0.00 0.00 2.74
166 167 6.384305 ACTTATTTGATCTACCAGGCTAGTGT 59.616 38.462 0.00 0.00 0.00 3.55
167 168 7.563924 ACTTATTTGATCTACCAGGCTAGTGTA 59.436 37.037 0.00 0.00 0.00 2.90
168 169 6.808321 ATTTGATCTACCAGGCTAGTGTAA 57.192 37.500 0.00 0.00 0.00 2.41
169 170 6.614694 TTTGATCTACCAGGCTAGTGTAAA 57.385 37.500 0.00 0.00 0.00 2.01
170 171 6.614694 TTGATCTACCAGGCTAGTGTAAAA 57.385 37.500 0.00 0.00 0.00 1.52
171 172 6.808321 TGATCTACCAGGCTAGTGTAAAAT 57.192 37.500 0.00 0.00 0.00 1.82
172 173 6.582636 TGATCTACCAGGCTAGTGTAAAATG 58.417 40.000 0.00 0.00 0.00 2.32
173 174 6.382859 TGATCTACCAGGCTAGTGTAAAATGA 59.617 38.462 0.00 0.00 0.00 2.57
174 175 6.614694 TCTACCAGGCTAGTGTAAAATGAA 57.385 37.500 0.00 0.00 0.00 2.57
175 176 7.011499 TCTACCAGGCTAGTGTAAAATGAAA 57.989 36.000 0.00 0.00 0.00 2.69
176 177 7.630082 TCTACCAGGCTAGTGTAAAATGAAAT 58.370 34.615 0.00 0.00 0.00 2.17
177 178 8.764558 TCTACCAGGCTAGTGTAAAATGAAATA 58.235 33.333 0.00 0.00 0.00 1.40
178 179 7.865706 ACCAGGCTAGTGTAAAATGAAATAG 57.134 36.000 0.00 0.00 0.00 1.73
179 180 7.630082 ACCAGGCTAGTGTAAAATGAAATAGA 58.370 34.615 0.00 0.00 0.00 1.98
180 181 8.107095 ACCAGGCTAGTGTAAAATGAAATAGAA 58.893 33.333 0.00 0.00 0.00 2.10
181 182 8.398665 CCAGGCTAGTGTAAAATGAAATAGAAC 58.601 37.037 0.00 0.00 0.00 3.01
182 183 8.398665 CAGGCTAGTGTAAAATGAAATAGAACC 58.601 37.037 0.00 0.00 0.00 3.62
183 184 8.107095 AGGCTAGTGTAAAATGAAATAGAACCA 58.893 33.333 0.00 0.00 0.00 3.67
184 185 8.182227 GGCTAGTGTAAAATGAAATAGAACCAC 58.818 37.037 0.00 0.00 0.00 4.16
185 186 8.726988 GCTAGTGTAAAATGAAATAGAACCACA 58.273 33.333 0.00 0.00 0.00 4.17
188 189 9.965824 AGTGTAAAATGAAATAGAACCACAAAG 57.034 29.630 0.00 0.00 0.00 2.77
189 190 8.699749 GTGTAAAATGAAATAGAACCACAAAGC 58.300 33.333 0.00 0.00 0.00 3.51
190 191 8.637986 TGTAAAATGAAATAGAACCACAAAGCT 58.362 29.630 0.00 0.00 0.00 3.74
191 192 9.476202 GTAAAATGAAATAGAACCACAAAGCTT 57.524 29.630 0.00 0.00 0.00 3.74
192 193 8.962884 AAAATGAAATAGAACCACAAAGCTTT 57.037 26.923 5.69 5.69 0.00 3.51
193 194 7.951530 AATGAAATAGAACCACAAAGCTTTG 57.048 32.000 32.53 32.53 43.62 2.77
194 195 5.288804 TGAAATAGAACCACAAAGCTTTGC 58.711 37.500 33.72 19.58 41.79 3.68
195 196 4.935352 AATAGAACCACAAAGCTTTGCA 57.065 36.364 33.72 13.95 41.79 4.08
196 197 5.473066 AATAGAACCACAAAGCTTTGCAT 57.527 34.783 33.72 19.27 41.79 3.96
197 198 6.588719 AATAGAACCACAAAGCTTTGCATA 57.411 33.333 33.72 19.08 41.79 3.14
198 199 6.780457 ATAGAACCACAAAGCTTTGCATAT 57.220 33.333 33.72 20.27 41.79 1.78
199 200 7.880160 ATAGAACCACAAAGCTTTGCATATA 57.120 32.000 33.72 20.09 41.79 0.86
200 201 6.780457 AGAACCACAAAGCTTTGCATATAT 57.220 33.333 33.72 18.02 41.79 0.86
201 202 7.174107 AGAACCACAAAGCTTTGCATATATT 57.826 32.000 33.72 20.65 41.79 1.28
202 203 7.037438 AGAACCACAAAGCTTTGCATATATTG 58.963 34.615 33.72 22.97 41.79 1.90
203 204 6.284891 ACCACAAAGCTTTGCATATATTGT 57.715 33.333 33.72 15.53 41.79 2.71
204 205 6.101332 ACCACAAAGCTTTGCATATATTGTG 58.899 36.000 33.72 22.65 43.38 3.33
205 206 6.578020 CACAAAGCTTTGCATATATTGTGG 57.422 37.500 33.72 10.43 41.29 4.17
206 207 6.101332 CACAAAGCTTTGCATATATTGTGGT 58.899 36.000 33.72 11.10 41.29 4.16
207 208 6.035220 CACAAAGCTTTGCATATATTGTGGTG 59.965 38.462 33.72 18.15 41.29 4.17
208 209 6.071447 ACAAAGCTTTGCATATATTGTGGTGA 60.071 34.615 33.72 0.00 41.79 4.02
209 210 6.528537 AAGCTTTGCATATATTGTGGTGAA 57.471 33.333 0.00 0.00 0.00 3.18
210 211 6.140303 AGCTTTGCATATATTGTGGTGAAG 57.860 37.500 0.00 0.00 0.00 3.02
211 212 5.887598 AGCTTTGCATATATTGTGGTGAAGA 59.112 36.000 0.00 0.00 0.00 2.87
212 213 6.548622 AGCTTTGCATATATTGTGGTGAAGAT 59.451 34.615 0.00 0.00 0.00 2.40
213 214 6.639686 GCTTTGCATATATTGTGGTGAAGATG 59.360 38.462 0.00 0.00 0.00 2.90
214 215 7.643569 TTTGCATATATTGTGGTGAAGATGT 57.356 32.000 0.00 0.00 0.00 3.06
215 216 6.622833 TGCATATATTGTGGTGAAGATGTG 57.377 37.500 0.00 0.00 0.00 3.21
216 217 5.532032 TGCATATATTGTGGTGAAGATGTGG 59.468 40.000 0.00 0.00 0.00 4.17
217 218 5.532406 GCATATATTGTGGTGAAGATGTGGT 59.468 40.000 0.00 0.00 0.00 4.16
218 219 6.039717 GCATATATTGTGGTGAAGATGTGGTT 59.960 38.462 0.00 0.00 0.00 3.67
219 220 5.902613 ATATTGTGGTGAAGATGTGGTTG 57.097 39.130 0.00 0.00 0.00 3.77
220 221 2.727123 TGTGGTGAAGATGTGGTTGT 57.273 45.000 0.00 0.00 0.00 3.32
221 222 3.847671 TGTGGTGAAGATGTGGTTGTA 57.152 42.857 0.00 0.00 0.00 2.41
222 223 4.365514 TGTGGTGAAGATGTGGTTGTAT 57.634 40.909 0.00 0.00 0.00 2.29
223 224 5.491323 TGTGGTGAAGATGTGGTTGTATA 57.509 39.130 0.00 0.00 0.00 1.47
224 225 6.061022 TGTGGTGAAGATGTGGTTGTATAT 57.939 37.500 0.00 0.00 0.00 0.86
225 226 7.189079 TGTGGTGAAGATGTGGTTGTATATA 57.811 36.000 0.00 0.00 0.00 0.86
226 227 7.801104 TGTGGTGAAGATGTGGTTGTATATAT 58.199 34.615 0.00 0.00 0.00 0.86
227 228 7.714813 TGTGGTGAAGATGTGGTTGTATATATG 59.285 37.037 0.00 0.00 0.00 1.78
228 229 7.173218 GTGGTGAAGATGTGGTTGTATATATGG 59.827 40.741 0.00 0.00 0.00 2.74
229 230 7.071824 TGGTGAAGATGTGGTTGTATATATGGA 59.928 37.037 0.00 0.00 0.00 3.41
230 231 7.604164 GGTGAAGATGTGGTTGTATATATGGAG 59.396 40.741 0.00 0.00 0.00 3.86
231 232 8.367911 GTGAAGATGTGGTTGTATATATGGAGA 58.632 37.037 0.00 0.00 0.00 3.71
232 233 8.367911 TGAAGATGTGGTTGTATATATGGAGAC 58.632 37.037 0.00 0.00 0.00 3.36
252 253 8.243426 TGGAGACACAACATTATTCAAATAAGC 58.757 33.333 2.05 0.00 32.67 3.09
253 254 7.429340 GGAGACACAACATTATTCAAATAAGCG 59.571 37.037 2.05 0.00 34.62 4.68
254 255 8.039603 AGACACAACATTATTCAAATAAGCGA 57.960 30.769 2.05 0.00 34.62 4.93
255 256 8.511321 AGACACAACATTATTCAAATAAGCGAA 58.489 29.630 2.05 0.00 34.62 4.70
256 257 9.123709 GACACAACATTATTCAAATAAGCGAAA 57.876 29.630 2.05 0.00 34.62 3.46
257 258 9.128107 ACACAACATTATTCAAATAAGCGAAAG 57.872 29.630 2.05 0.00 34.62 2.62
258 259 9.128107 CACAACATTATTCAAATAAGCGAAAGT 57.872 29.630 2.05 0.00 34.62 2.66
259 260 9.128107 ACAACATTATTCAAATAAGCGAAAGTG 57.872 29.630 2.05 0.00 34.62 3.16
260 261 8.586273 CAACATTATTCAAATAAGCGAAAGTGG 58.414 33.333 2.05 0.00 34.62 4.00
261 262 7.826690 ACATTATTCAAATAAGCGAAAGTGGT 58.173 30.769 2.05 0.00 34.62 4.16
262 263 8.303876 ACATTATTCAAATAAGCGAAAGTGGTT 58.696 29.630 2.05 0.00 34.62 3.67
263 264 8.586273 CATTATTCAAATAAGCGAAAGTGGTTG 58.414 33.333 2.05 0.00 34.62 3.77
264 265 5.508200 TTCAAATAAGCGAAAGTGGTTGT 57.492 34.783 0.00 0.00 0.00 3.32
265 266 4.854399 TCAAATAAGCGAAAGTGGTTGTG 58.146 39.130 0.00 0.00 0.00 3.33
266 267 3.915437 AATAAGCGAAAGTGGTTGTGG 57.085 42.857 0.00 0.00 0.00 4.17
267 268 2.335316 TAAGCGAAAGTGGTTGTGGT 57.665 45.000 0.00 0.00 0.00 4.16
268 269 2.335316 AAGCGAAAGTGGTTGTGGTA 57.665 45.000 0.00 0.00 0.00 3.25
269 270 2.561478 AGCGAAAGTGGTTGTGGTAT 57.439 45.000 0.00 0.00 0.00 2.73
270 271 3.688694 AGCGAAAGTGGTTGTGGTATA 57.311 42.857 0.00 0.00 0.00 1.47
271 272 4.216411 AGCGAAAGTGGTTGTGGTATAT 57.784 40.909 0.00 0.00 0.00 0.86
272 273 5.347620 AGCGAAAGTGGTTGTGGTATATA 57.652 39.130 0.00 0.00 0.00 0.86
273 274 5.925509 AGCGAAAGTGGTTGTGGTATATAT 58.074 37.500 0.00 0.00 0.00 0.86
274 275 7.058023 AGCGAAAGTGGTTGTGGTATATATA 57.942 36.000 0.00 0.00 0.00 0.86
275 276 7.676947 AGCGAAAGTGGTTGTGGTATATATAT 58.323 34.615 0.00 0.00 0.00 0.86
276 277 7.602644 AGCGAAAGTGGTTGTGGTATATATATG 59.397 37.037 5.44 0.00 0.00 1.78
277 278 7.386848 GCGAAAGTGGTTGTGGTATATATATGT 59.613 37.037 5.44 0.00 0.00 2.29
278 279 9.917129 CGAAAGTGGTTGTGGTATATATATGTA 57.083 33.333 5.44 0.00 0.00 2.29
281 282 9.720769 AAGTGGTTGTGGTATATATATGTAAGC 57.279 33.333 5.44 4.24 0.00 3.09
282 283 9.101325 AGTGGTTGTGGTATATATATGTAAGCT 57.899 33.333 5.44 0.00 0.00 3.74
297 298 5.926214 TGTAAGCTAAATTTACGCACACA 57.074 34.783 16.68 15.60 34.51 3.72
298 299 6.301687 TGTAAGCTAAATTTACGCACACAA 57.698 33.333 16.68 6.85 34.51 3.33
299 300 6.726230 TGTAAGCTAAATTTACGCACACAAA 58.274 32.000 16.68 0.00 34.51 2.83
300 301 6.853872 TGTAAGCTAAATTTACGCACACAAAG 59.146 34.615 16.68 0.00 34.51 2.77
301 302 5.682943 AGCTAAATTTACGCACACAAAGA 57.317 34.783 16.68 0.00 0.00 2.52
302 303 5.689819 AGCTAAATTTACGCACACAAAGAG 58.310 37.500 16.68 0.00 0.00 2.85
303 304 5.468746 AGCTAAATTTACGCACACAAAGAGA 59.531 36.000 16.68 0.00 0.00 3.10
304 305 6.149474 AGCTAAATTTACGCACACAAAGAGAT 59.851 34.615 16.68 0.00 0.00 2.75
305 306 6.249260 GCTAAATTTACGCACACAAAGAGATG 59.751 38.462 12.10 0.00 0.00 2.90
306 307 5.689383 AATTTACGCACACAAAGAGATGT 57.311 34.783 0.00 0.00 0.00 3.06
307 308 5.689383 ATTTACGCACACAAAGAGATGTT 57.311 34.783 0.00 0.00 0.00 2.71
308 309 5.493133 TTTACGCACACAAAGAGATGTTT 57.507 34.783 0.00 0.00 0.00 2.83
309 310 3.338818 ACGCACACAAAGAGATGTTTG 57.661 42.857 1.26 1.26 42.21 2.93
310 311 2.033299 ACGCACACAAAGAGATGTTTGG 59.967 45.455 7.29 0.06 41.03 3.28
311 312 2.033299 CGCACACAAAGAGATGTTTGGT 59.967 45.455 7.29 0.59 41.03 3.67
312 313 3.374745 GCACACAAAGAGATGTTTGGTG 58.625 45.455 14.24 14.24 41.03 4.17
313 314 3.066621 GCACACAAAGAGATGTTTGGTGA 59.933 43.478 18.98 0.00 41.03 4.02
314 315 4.439974 GCACACAAAGAGATGTTTGGTGAA 60.440 41.667 18.98 0.00 41.03 3.18
315 316 5.276270 CACACAAAGAGATGTTTGGTGAAG 58.724 41.667 13.73 1.54 41.03 3.02
316 317 4.949856 ACACAAAGAGATGTTTGGTGAAGT 59.050 37.500 7.29 0.00 41.03 3.01
317 318 6.038161 CACACAAAGAGATGTTTGGTGAAGTA 59.962 38.462 13.73 0.00 41.03 2.24
318 319 6.601613 ACACAAAGAGATGTTTGGTGAAGTAA 59.398 34.615 7.29 0.00 41.03 2.24
319 320 7.285401 ACACAAAGAGATGTTTGGTGAAGTAAT 59.715 33.333 7.29 0.00 41.03 1.89
320 321 8.137437 CACAAAGAGATGTTTGGTGAAGTAATT 58.863 33.333 7.29 0.00 41.03 1.40
321 322 9.349713 ACAAAGAGATGTTTGGTGAAGTAATTA 57.650 29.630 7.29 0.00 41.03 1.40
324 325 9.965902 AAGAGATGTTTGGTGAAGTAATTATCT 57.034 29.630 0.00 0.00 0.00 1.98
325 326 9.965902 AGAGATGTTTGGTGAAGTAATTATCTT 57.034 29.630 0.00 0.00 0.00 2.40
326 327 9.994432 GAGATGTTTGGTGAAGTAATTATCTTG 57.006 33.333 5.41 0.00 0.00 3.02
327 328 9.520515 AGATGTTTGGTGAAGTAATTATCTTGT 57.479 29.630 5.41 0.00 0.00 3.16
330 331 9.126151 TGTTTGGTGAAGTAATTATCTTGTTCA 57.874 29.630 5.41 0.00 0.00 3.18
331 332 9.394477 GTTTGGTGAAGTAATTATCTTGTTCAC 57.606 33.333 13.62 13.62 41.90 3.18
332 333 8.684386 TTGGTGAAGTAATTATCTTGTTCACA 57.316 30.769 18.79 9.83 43.56 3.58
333 334 8.862325 TGGTGAAGTAATTATCTTGTTCACAT 57.138 30.769 18.79 0.00 43.56 3.21
334 335 9.295825 TGGTGAAGTAATTATCTTGTTCACATT 57.704 29.630 18.79 0.00 43.56 2.71
339 340 9.747898 AAGTAATTATCTTGTTCACATTACCCA 57.252 29.630 0.00 0.00 0.00 4.51
340 341 9.174166 AGTAATTATCTTGTTCACATTACCCAC 57.826 33.333 0.00 0.00 0.00 4.61
341 342 7.404671 AATTATCTTGTTCACATTACCCACC 57.595 36.000 0.00 0.00 0.00 4.61
342 343 4.657814 ATCTTGTTCACATTACCCACCT 57.342 40.909 0.00 0.00 0.00 4.00
343 344 5.772393 ATCTTGTTCACATTACCCACCTA 57.228 39.130 0.00 0.00 0.00 3.08
344 345 4.901868 TCTTGTTCACATTACCCACCTAC 58.098 43.478 0.00 0.00 0.00 3.18
345 346 4.595781 TCTTGTTCACATTACCCACCTACT 59.404 41.667 0.00 0.00 0.00 2.57
346 347 4.986054 TGTTCACATTACCCACCTACTT 57.014 40.909 0.00 0.00 0.00 2.24
347 348 4.647611 TGTTCACATTACCCACCTACTTG 58.352 43.478 0.00 0.00 0.00 3.16
348 349 4.103469 TGTTCACATTACCCACCTACTTGT 59.897 41.667 0.00 0.00 0.00 3.16
349 350 4.986054 TCACATTACCCACCTACTTGTT 57.014 40.909 0.00 0.00 0.00 2.83
350 351 4.901868 TCACATTACCCACCTACTTGTTC 58.098 43.478 0.00 0.00 0.00 3.18
351 352 3.682858 CACATTACCCACCTACTTGTTCG 59.317 47.826 0.00 0.00 0.00 3.95
352 353 2.460757 TTACCCACCTACTTGTTCGC 57.539 50.000 0.00 0.00 0.00 4.70
353 354 1.340088 TACCCACCTACTTGTTCGCA 58.660 50.000 0.00 0.00 0.00 5.10
354 355 0.690762 ACCCACCTACTTGTTCGCAT 59.309 50.000 0.00 0.00 0.00 4.73
355 356 1.086696 CCCACCTACTTGTTCGCATG 58.913 55.000 0.00 0.00 0.00 4.06
356 357 1.610624 CCCACCTACTTGTTCGCATGT 60.611 52.381 0.00 0.00 38.71 3.21
357 358 1.464608 CCACCTACTTGTTCGCATGTG 59.535 52.381 0.00 0.00 36.90 3.21
358 359 2.412870 CACCTACTTGTTCGCATGTGA 58.587 47.619 4.45 4.45 36.90 3.58
359 360 3.002791 CACCTACTTGTTCGCATGTGAT 58.997 45.455 10.29 0.00 36.90 3.06
360 361 3.002791 ACCTACTTGTTCGCATGTGATG 58.997 45.455 10.29 3.95 36.90 3.07
361 362 3.261580 CCTACTTGTTCGCATGTGATGA 58.738 45.455 10.29 0.00 36.90 2.92
362 363 3.684305 CCTACTTGTTCGCATGTGATGAA 59.316 43.478 10.29 5.16 36.90 2.57
363 364 4.333649 CCTACTTGTTCGCATGTGATGAAT 59.666 41.667 10.29 0.00 36.90 2.57
364 365 4.771590 ACTTGTTCGCATGTGATGAATT 57.228 36.364 10.29 0.00 34.69 2.17
365 366 5.878332 ACTTGTTCGCATGTGATGAATTA 57.122 34.783 10.29 0.00 34.69 1.40
366 367 6.441093 ACTTGTTCGCATGTGATGAATTAT 57.559 33.333 10.29 0.00 34.69 1.28
367 368 6.260377 ACTTGTTCGCATGTGATGAATTATG 58.740 36.000 10.29 0.00 34.69 1.90
368 369 4.600032 TGTTCGCATGTGATGAATTATGC 58.400 39.130 10.29 0.00 41.76 3.14
369 370 4.336153 TGTTCGCATGTGATGAATTATGCT 59.664 37.500 10.29 0.00 42.71 3.79
370 371 5.526846 TGTTCGCATGTGATGAATTATGCTA 59.473 36.000 10.29 0.00 42.71 3.49
371 372 5.851047 TCGCATGTGATGAATTATGCTAG 57.149 39.130 4.45 0.00 42.71 3.42
372 373 5.299949 TCGCATGTGATGAATTATGCTAGT 58.700 37.500 4.45 0.00 42.71 2.57
373 374 5.759763 TCGCATGTGATGAATTATGCTAGTT 59.240 36.000 4.45 0.00 42.71 2.24
374 375 6.073602 TCGCATGTGATGAATTATGCTAGTTC 60.074 38.462 4.45 0.00 42.71 3.01
375 376 6.293027 CGCATGTGATGAATTATGCTAGTTCA 60.293 38.462 0.00 0.00 42.71 3.18
376 377 7.420002 GCATGTGATGAATTATGCTAGTTCAA 58.580 34.615 0.00 0.00 41.89 2.69
377 378 8.080417 GCATGTGATGAATTATGCTAGTTCAAT 58.920 33.333 0.00 0.00 41.89 2.57
378 379 9.394477 CATGTGATGAATTATGCTAGTTCAATG 57.606 33.333 0.00 0.00 37.82 2.82
379 380 7.420002 TGTGATGAATTATGCTAGTTCAATGC 58.580 34.615 0.00 0.00 37.82 3.56
380 381 6.860023 GTGATGAATTATGCTAGTTCAATGCC 59.140 38.462 0.00 0.00 37.82 4.40
381 382 5.772825 TGAATTATGCTAGTTCAATGCCC 57.227 39.130 0.00 0.00 32.45 5.36
382 383 5.448654 TGAATTATGCTAGTTCAATGCCCT 58.551 37.500 0.00 0.00 32.45 5.19
383 384 5.893255 TGAATTATGCTAGTTCAATGCCCTT 59.107 36.000 0.00 0.00 32.45 3.95
384 385 6.380846 TGAATTATGCTAGTTCAATGCCCTTT 59.619 34.615 0.00 0.00 32.45 3.11
385 386 6.796785 ATTATGCTAGTTCAATGCCCTTTT 57.203 33.333 0.00 0.00 0.00 2.27
386 387 6.603940 TTATGCTAGTTCAATGCCCTTTTT 57.396 33.333 0.00 0.00 0.00 1.94
408 409 6.959639 TTTTAGGAGAAATGCAAGTTCAGT 57.040 33.333 14.05 3.13 44.66 3.41
409 410 5.947228 TTAGGAGAAATGCAAGTTCAGTG 57.053 39.130 14.05 0.00 44.66 3.66
410 411 2.555757 AGGAGAAATGCAAGTTCAGTGC 59.444 45.455 14.05 2.44 44.66 4.40
411 412 2.352127 GGAGAAATGCAAGTTCAGTGCC 60.352 50.000 14.05 7.31 44.66 5.01
412 413 2.555757 GAGAAATGCAAGTTCAGTGCCT 59.444 45.455 14.05 0.00 44.66 4.75
413 414 2.961062 AGAAATGCAAGTTCAGTGCCTT 59.039 40.909 14.05 0.00 44.66 4.35
414 415 2.806608 AATGCAAGTTCAGTGCCTTG 57.193 45.000 14.56 14.56 41.49 3.61
415 416 1.985473 ATGCAAGTTCAGTGCCTTGA 58.015 45.000 20.20 9.95 41.49 3.02
416 417 1.024271 TGCAAGTTCAGTGCCTTGAC 58.976 50.000 20.20 13.81 41.49 3.18
417 418 1.024271 GCAAGTTCAGTGCCTTGACA 58.976 50.000 20.20 0.00 40.36 3.58
418 419 1.002033 GCAAGTTCAGTGCCTTGACAG 60.002 52.381 20.20 1.65 40.36 3.51
419 420 2.292267 CAAGTTCAGTGCCTTGACAGT 58.708 47.619 13.97 0.00 40.36 3.55
420 421 2.684881 CAAGTTCAGTGCCTTGACAGTT 59.315 45.455 13.97 0.00 40.36 3.16
421 422 2.292267 AGTTCAGTGCCTTGACAGTTG 58.708 47.619 0.00 0.00 0.00 3.16
422 423 2.092968 AGTTCAGTGCCTTGACAGTTGA 60.093 45.455 0.00 0.00 0.00 3.18
423 424 1.953559 TCAGTGCCTTGACAGTTGAC 58.046 50.000 0.00 0.00 0.00 3.18
424 425 1.209261 TCAGTGCCTTGACAGTTGACA 59.791 47.619 0.00 0.00 0.00 3.58
425 426 2.158769 TCAGTGCCTTGACAGTTGACAT 60.159 45.455 0.00 0.00 0.00 3.06
426 427 2.031420 CAGTGCCTTGACAGTTGACATG 60.031 50.000 0.00 0.00 0.00 3.21
427 428 0.953727 TGCCTTGACAGTTGACATGC 59.046 50.000 0.00 0.00 0.00 4.06
428 429 0.953727 GCCTTGACAGTTGACATGCA 59.046 50.000 0.00 0.00 0.00 3.96
429 430 1.068748 GCCTTGACAGTTGACATGCAG 60.069 52.381 0.00 0.00 0.00 4.41
430 431 2.497138 CCTTGACAGTTGACATGCAGA 58.503 47.619 0.00 0.00 0.00 4.26
431 432 2.225019 CCTTGACAGTTGACATGCAGAC 59.775 50.000 0.00 0.00 0.00 3.51
432 433 1.882912 TGACAGTTGACATGCAGACC 58.117 50.000 0.00 0.00 0.00 3.85
433 434 1.160137 GACAGTTGACATGCAGACCC 58.840 55.000 0.00 0.00 0.00 4.46
434 435 0.250901 ACAGTTGACATGCAGACCCC 60.251 55.000 0.00 0.00 0.00 4.95
435 436 0.250858 CAGTTGACATGCAGACCCCA 60.251 55.000 0.00 0.00 0.00 4.96
436 437 0.250901 AGTTGACATGCAGACCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
437 438 0.250901 GTTGACATGCAGACCCCACT 60.251 55.000 0.00 0.00 0.00 4.00
438 439 0.036732 TTGACATGCAGACCCCACTC 59.963 55.000 0.00 0.00 0.00 3.51
439 440 1.126948 TGACATGCAGACCCCACTCA 61.127 55.000 0.00 0.00 0.00 3.41
440 441 0.674895 GACATGCAGACCCCACTCAC 60.675 60.000 0.00 0.00 0.00 3.51
441 442 1.130054 ACATGCAGACCCCACTCACT 61.130 55.000 0.00 0.00 0.00 3.41
442 443 0.392193 CATGCAGACCCCACTCACTC 60.392 60.000 0.00 0.00 0.00 3.51
443 444 0.546267 ATGCAGACCCCACTCACTCT 60.546 55.000 0.00 0.00 0.00 3.24
444 445 0.114364 TGCAGACCCCACTCACTCTA 59.886 55.000 0.00 0.00 0.00 2.43
445 446 0.820871 GCAGACCCCACTCACTCTAG 59.179 60.000 0.00 0.00 0.00 2.43
446 447 1.893210 GCAGACCCCACTCACTCTAGT 60.893 57.143 0.00 0.00 0.00 2.57
447 448 2.530701 CAGACCCCACTCACTCTAGTT 58.469 52.381 0.00 0.00 0.00 2.24
448 449 2.232452 CAGACCCCACTCACTCTAGTTG 59.768 54.545 0.00 0.00 0.00 3.16
449 450 2.158295 AGACCCCACTCACTCTAGTTGT 60.158 50.000 0.00 0.00 0.00 3.32
450 451 2.633481 GACCCCACTCACTCTAGTTGTT 59.367 50.000 0.00 0.00 0.00 2.83
451 452 2.633481 ACCCCACTCACTCTAGTTGTTC 59.367 50.000 0.00 0.00 0.00 3.18
452 453 2.028020 CCCCACTCACTCTAGTTGTTCC 60.028 54.545 0.00 0.00 0.00 3.62
453 454 2.028020 CCCACTCACTCTAGTTGTTCCC 60.028 54.545 0.00 0.00 0.00 3.97
454 455 2.028020 CCACTCACTCTAGTTGTTCCCC 60.028 54.545 0.00 0.00 0.00 4.81
455 456 2.028020 CACTCACTCTAGTTGTTCCCCC 60.028 54.545 0.00 0.00 0.00 5.40
456 457 2.257207 CTCACTCTAGTTGTTCCCCCA 58.743 52.381 0.00 0.00 0.00 4.96
457 458 1.975680 TCACTCTAGTTGTTCCCCCAC 59.024 52.381 0.00 0.00 0.00 4.61
458 459 1.978580 CACTCTAGTTGTTCCCCCACT 59.021 52.381 0.00 0.00 0.00 4.00
459 460 3.170717 CACTCTAGTTGTTCCCCCACTA 58.829 50.000 0.00 0.00 0.00 2.74
460 461 3.056035 CACTCTAGTTGTTCCCCCACTAC 60.056 52.174 0.00 0.00 0.00 2.73
461 462 3.170717 CTCTAGTTGTTCCCCCACTACA 58.829 50.000 0.00 0.00 0.00 2.74
462 463 2.901839 TCTAGTTGTTCCCCCACTACAC 59.098 50.000 0.00 0.00 0.00 2.90
463 464 1.513858 AGTTGTTCCCCCACTACACA 58.486 50.000 0.00 0.00 0.00 3.72
464 465 2.062636 AGTTGTTCCCCCACTACACAT 58.937 47.619 0.00 0.00 0.00 3.21
465 466 3.253220 AGTTGTTCCCCCACTACACATA 58.747 45.455 0.00 0.00 0.00 2.29
466 467 3.653836 AGTTGTTCCCCCACTACACATAA 59.346 43.478 0.00 0.00 0.00 1.90
467 468 4.105057 AGTTGTTCCCCCACTACACATAAA 59.895 41.667 0.00 0.00 0.00 1.40
468 469 4.023726 TGTTCCCCCACTACACATAAAC 57.976 45.455 0.00 0.00 0.00 2.01
469 470 3.244981 TGTTCCCCCACTACACATAAACC 60.245 47.826 0.00 0.00 0.00 3.27
470 471 1.555992 TCCCCCACTACACATAAACCG 59.444 52.381 0.00 0.00 0.00 4.44
471 472 1.555992 CCCCCACTACACATAAACCGA 59.444 52.381 0.00 0.00 0.00 4.69
472 473 2.171870 CCCCCACTACACATAAACCGAT 59.828 50.000 0.00 0.00 0.00 4.18
473 474 3.388676 CCCCCACTACACATAAACCGATA 59.611 47.826 0.00 0.00 0.00 2.92
474 475 4.502604 CCCCCACTACACATAAACCGATAG 60.503 50.000 0.00 0.00 0.00 2.08
475 476 4.342951 CCCCACTACACATAAACCGATAGA 59.657 45.833 0.00 0.00 39.76 1.98
476 477 5.163385 CCCCACTACACATAAACCGATAGAA 60.163 44.000 0.00 0.00 39.76 2.10
477 478 6.463897 CCCCACTACACATAAACCGATAGAAT 60.464 42.308 0.00 0.00 39.76 2.40
478 479 6.990349 CCCACTACACATAAACCGATAGAATT 59.010 38.462 0.00 0.00 39.76 2.17
479 480 7.497909 CCCACTACACATAAACCGATAGAATTT 59.502 37.037 0.00 0.00 39.76 1.82
480 481 8.889717 CCACTACACATAAACCGATAGAATTTT 58.110 33.333 0.00 0.00 39.76 1.82
512 513 8.682936 AATCCTAATAACTGCTATTGTTGAGG 57.317 34.615 0.00 0.00 32.28 3.86
513 514 6.591935 TCCTAATAACTGCTATTGTTGAGGG 58.408 40.000 0.00 0.00 32.28 4.30
514 515 6.157994 TCCTAATAACTGCTATTGTTGAGGGT 59.842 38.462 0.00 0.00 32.28 4.34
515 516 6.828785 CCTAATAACTGCTATTGTTGAGGGTT 59.171 38.462 0.00 0.00 32.28 4.11
516 517 7.339466 CCTAATAACTGCTATTGTTGAGGGTTT 59.661 37.037 0.00 0.00 32.28 3.27
517 518 9.391006 CTAATAACTGCTATTGTTGAGGGTTTA 57.609 33.333 0.00 0.00 32.28 2.01
518 519 8.644374 AATAACTGCTATTGTTGAGGGTTTAA 57.356 30.769 0.00 0.00 0.00 1.52
519 520 6.575162 AACTGCTATTGTTGAGGGTTTAAG 57.425 37.500 0.00 0.00 0.00 1.85
520 521 5.631119 ACTGCTATTGTTGAGGGTTTAAGT 58.369 37.500 0.00 0.00 0.00 2.24
521 522 6.068670 ACTGCTATTGTTGAGGGTTTAAGTT 58.931 36.000 0.00 0.00 0.00 2.66
522 523 6.016276 ACTGCTATTGTTGAGGGTTTAAGTTG 60.016 38.462 0.00 0.00 0.00 3.16
523 524 5.830991 TGCTATTGTTGAGGGTTTAAGTTGT 59.169 36.000 0.00 0.00 0.00 3.32
524 525 6.149633 GCTATTGTTGAGGGTTTAAGTTGTG 58.850 40.000 0.00 0.00 0.00 3.33
525 526 4.379339 TTGTTGAGGGTTTAAGTTGTGC 57.621 40.909 0.00 0.00 0.00 4.57
526 527 3.626930 TGTTGAGGGTTTAAGTTGTGCT 58.373 40.909 0.00 0.00 0.00 4.40
527 528 3.630312 TGTTGAGGGTTTAAGTTGTGCTC 59.370 43.478 0.00 0.00 0.00 4.26
528 529 3.569194 TGAGGGTTTAAGTTGTGCTCA 57.431 42.857 0.00 0.00 0.00 4.26
529 530 3.211045 TGAGGGTTTAAGTTGTGCTCAC 58.789 45.455 0.00 0.00 0.00 3.51
530 531 2.552743 GAGGGTTTAAGTTGTGCTCACC 59.447 50.000 0.00 0.00 0.00 4.02
531 532 1.265905 GGGTTTAAGTTGTGCTCACCG 59.734 52.381 0.00 0.00 0.00 4.94
532 533 1.944709 GGTTTAAGTTGTGCTCACCGT 59.055 47.619 0.00 0.00 0.00 4.83
533 534 2.286772 GGTTTAAGTTGTGCTCACCGTG 60.287 50.000 0.00 0.00 0.00 4.94
534 535 2.319136 TTAAGTTGTGCTCACCGTGT 57.681 45.000 0.00 0.00 0.00 4.49
535 536 1.860676 TAAGTTGTGCTCACCGTGTC 58.139 50.000 0.00 0.00 0.00 3.67
536 537 0.178068 AAGTTGTGCTCACCGTGTCT 59.822 50.000 0.00 0.00 0.00 3.41
537 538 0.178068 AGTTGTGCTCACCGTGTCTT 59.822 50.000 0.00 0.00 0.00 3.01
538 539 1.014352 GTTGTGCTCACCGTGTCTTT 58.986 50.000 0.00 0.00 0.00 2.52
539 540 2.159014 AGTTGTGCTCACCGTGTCTTTA 60.159 45.455 0.00 0.00 0.00 1.85
540 541 2.605837 TGTGCTCACCGTGTCTTTAA 57.394 45.000 0.00 0.00 0.00 1.52
541 542 2.907634 TGTGCTCACCGTGTCTTTAAA 58.092 42.857 0.00 0.00 0.00 1.52
542 543 2.869801 TGTGCTCACCGTGTCTTTAAAG 59.130 45.455 9.04 9.04 0.00 1.85
543 544 2.870411 GTGCTCACCGTGTCTTTAAAGT 59.130 45.455 14.74 0.00 0.00 2.66
544 545 3.311596 GTGCTCACCGTGTCTTTAAAGTT 59.688 43.478 14.74 0.00 0.00 2.66
545 546 4.508861 GTGCTCACCGTGTCTTTAAAGTTA 59.491 41.667 14.74 2.95 0.00 2.24
546 547 5.178809 GTGCTCACCGTGTCTTTAAAGTTAT 59.821 40.000 14.74 0.00 0.00 1.89
547 548 5.178623 TGCTCACCGTGTCTTTAAAGTTATG 59.821 40.000 14.74 9.99 0.00 1.90
548 549 5.390567 GCTCACCGTGTCTTTAAAGTTATGG 60.391 44.000 20.99 20.99 0.00 2.74
549 550 5.856156 TCACCGTGTCTTTAAAGTTATGGA 58.144 37.500 25.62 12.07 0.00 3.41
550 551 6.469410 TCACCGTGTCTTTAAAGTTATGGAT 58.531 36.000 25.62 14.63 0.00 3.41
551 552 6.938030 TCACCGTGTCTTTAAAGTTATGGATT 59.062 34.615 25.62 11.65 0.00 3.01
552 553 7.446013 TCACCGTGTCTTTAAAGTTATGGATTT 59.554 33.333 25.62 11.18 0.00 2.17
553 554 7.749126 CACCGTGTCTTTAAAGTTATGGATTTC 59.251 37.037 25.62 6.49 0.00 2.17
554 555 7.664318 ACCGTGTCTTTAAAGTTATGGATTTCT 59.336 33.333 25.62 10.71 0.00 2.52
555 556 8.175716 CCGTGTCTTTAAAGTTATGGATTTCTC 58.824 37.037 19.30 0.00 0.00 2.87
556 557 8.175716 CGTGTCTTTAAAGTTATGGATTTCTCC 58.824 37.037 14.74 0.00 42.45 3.71
557 558 8.459635 GTGTCTTTAAAGTTATGGATTTCTCCC 58.540 37.037 14.74 0.00 41.29 4.30
558 559 8.167392 TGTCTTTAAAGTTATGGATTTCTCCCA 58.833 33.333 14.74 0.00 41.29 4.37
559 560 8.459635 GTCTTTAAAGTTATGGATTTCTCCCAC 58.540 37.037 14.74 0.00 41.29 4.61
560 561 7.614192 TCTTTAAAGTTATGGATTTCTCCCACC 59.386 37.037 14.74 0.00 41.29 4.61
561 562 4.946160 AAGTTATGGATTTCTCCCACCA 57.054 40.909 0.00 0.00 41.29 4.17
562 563 4.946160 AGTTATGGATTTCTCCCACCAA 57.054 40.909 0.00 0.00 41.29 3.67
563 564 5.269554 AGTTATGGATTTCTCCCACCAAA 57.730 39.130 0.00 0.00 41.29 3.28
564 565 5.650283 AGTTATGGATTTCTCCCACCAAAA 58.350 37.500 0.00 0.00 41.29 2.44
565 566 6.081356 AGTTATGGATTTCTCCCACCAAAAA 58.919 36.000 0.00 0.00 41.29 1.94
663 664 3.949885 TTGCCCCTAGTCCGAGCGA 62.950 63.158 0.00 0.00 0.00 4.93
869 871 4.953868 CGGTGACCACGGCGACAA 62.954 66.667 16.62 0.00 0.00 3.18
994 1008 3.155167 GATCCCCTTCGGCTCCGT 61.155 66.667 8.28 0.00 40.74 4.69
1005 1019 2.265739 GCTCCGTGCTCCATGTCA 59.734 61.111 0.00 0.00 38.95 3.58
1142 1156 2.095919 GGAACCAAAATCGTCCGTTCTG 60.096 50.000 0.00 0.00 34.58 3.02
1160 1174 2.729491 CGTGTGCAGCGAGAACGA 60.729 61.111 4.77 0.00 42.66 3.85
1308 1322 6.936335 TGATGAATGAACTACAAGAAGAGCAA 59.064 34.615 0.00 0.00 0.00 3.91
1385 1399 1.115467 GAAGAGATGGAGGGCGAAGA 58.885 55.000 0.00 0.00 0.00 2.87
1387 1401 1.799933 AGAGATGGAGGGCGAAGAAT 58.200 50.000 0.00 0.00 0.00 2.40
1495 1509 7.094463 CCATTTGCAAATACTTTTGGGCATTTA 60.094 33.333 23.69 0.00 42.09 1.40
1545 1559 6.610075 ATGTTGAAAATGTATGGAAAGGCT 57.390 33.333 0.00 0.00 0.00 4.58
1738 1755 0.814812 GCTCTCTGCTCTGCCATTCC 60.815 60.000 0.00 0.00 38.95 3.01
1813 1833 2.092914 GCTAGACTAATGGGCCAACTGT 60.093 50.000 11.89 9.53 0.00 3.55
1997 2019 4.981806 ATCCAATTCAAATACACCGTGG 57.018 40.909 3.03 0.00 0.00 4.94
2043 2065 2.305635 TGGAAAATGTGCCTCAGCTCTA 59.694 45.455 0.00 0.00 40.80 2.43
2171 2195 0.541063 TTGGTGCGACTAGGGACTCA 60.541 55.000 0.00 0.00 41.75 3.41
2530 2562 4.502106 GGGCTTCTAACCCCCTCT 57.498 61.111 0.00 0.00 42.01 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.788100 CGGTCGCTTTTCTTAATTGACATG 59.212 41.667 0.00 0.00 0.00 3.21
2 3 3.187637 CCGGTCGCTTTTCTTAATTGACA 59.812 43.478 0.00 0.00 0.00 3.58
3 4 3.187842 ACCGGTCGCTTTTCTTAATTGAC 59.812 43.478 0.00 0.00 0.00 3.18
4 5 3.404899 ACCGGTCGCTTTTCTTAATTGA 58.595 40.909 0.00 0.00 0.00 2.57
5 6 3.723835 CGACCGGTCGCTTTTCTTAATTG 60.724 47.826 40.78 12.75 46.50 2.32
7 8 1.997606 CGACCGGTCGCTTTTCTTAAT 59.002 47.619 40.78 0.00 46.50 1.40
8 9 1.421382 CGACCGGTCGCTTTTCTTAA 58.579 50.000 40.78 0.00 46.50 1.85
9 10 3.111536 CGACCGGTCGCTTTTCTTA 57.888 52.632 40.78 0.00 46.50 2.10
10 11 3.946907 CGACCGGTCGCTTTTCTT 58.053 55.556 40.78 0.00 46.50 2.52
47 48 1.203928 CTTTGTCTAGCGATGGAGCG 58.796 55.000 0.00 0.00 43.00 5.03
48 49 1.929836 CACTTTGTCTAGCGATGGAGC 59.070 52.381 0.00 0.00 37.41 4.70
49 50 2.093973 ACCACTTTGTCTAGCGATGGAG 60.094 50.000 0.00 0.00 0.00 3.86
50 51 1.899814 ACCACTTTGTCTAGCGATGGA 59.100 47.619 0.00 0.00 0.00 3.41
51 52 2.271800 GACCACTTTGTCTAGCGATGG 58.728 52.381 0.00 0.00 32.39 3.51
52 53 2.959516 TGACCACTTTGTCTAGCGATG 58.040 47.619 0.00 0.00 36.21 3.84
53 54 3.525537 CATGACCACTTTGTCTAGCGAT 58.474 45.455 0.00 0.00 36.21 4.58
54 55 2.930887 GCATGACCACTTTGTCTAGCGA 60.931 50.000 0.00 0.00 36.21 4.93
55 56 1.394917 GCATGACCACTTTGTCTAGCG 59.605 52.381 0.00 0.00 36.21 4.26
56 57 2.426522 TGCATGACCACTTTGTCTAGC 58.573 47.619 0.00 0.00 36.21 3.42
57 58 4.256110 TGATGCATGACCACTTTGTCTAG 58.744 43.478 2.46 0.00 36.21 2.43
58 59 4.284829 TGATGCATGACCACTTTGTCTA 57.715 40.909 2.46 0.00 36.21 2.59
59 60 3.144657 TGATGCATGACCACTTTGTCT 57.855 42.857 2.46 0.00 36.21 3.41
60 61 3.254166 AGTTGATGCATGACCACTTTGTC 59.746 43.478 2.46 0.00 35.77 3.18
61 62 3.225104 AGTTGATGCATGACCACTTTGT 58.775 40.909 2.46 0.00 0.00 2.83
62 63 3.366679 GGAGTTGATGCATGACCACTTTG 60.367 47.826 2.46 0.00 0.00 2.77
63 64 2.821969 GGAGTTGATGCATGACCACTTT 59.178 45.455 2.46 0.00 0.00 2.66
64 65 2.224843 TGGAGTTGATGCATGACCACTT 60.225 45.455 2.46 0.00 0.00 3.16
65 66 1.352017 TGGAGTTGATGCATGACCACT 59.648 47.619 2.46 0.00 0.00 4.00
66 67 1.741706 CTGGAGTTGATGCATGACCAC 59.258 52.381 2.46 0.00 0.00 4.16
67 68 1.629861 TCTGGAGTTGATGCATGACCA 59.370 47.619 2.46 0.00 0.00 4.02
68 69 2.408271 TCTGGAGTTGATGCATGACC 57.592 50.000 2.46 0.00 0.00 4.02
69 70 5.549347 AGATATCTGGAGTTGATGCATGAC 58.451 41.667 2.46 2.37 0.00 3.06
70 71 5.279859 GGAGATATCTGGAGTTGATGCATGA 60.280 44.000 10.74 0.00 0.00 3.07
71 72 4.936411 GGAGATATCTGGAGTTGATGCATG 59.064 45.833 10.74 0.00 0.00 4.06
72 73 4.845225 AGGAGATATCTGGAGTTGATGCAT 59.155 41.667 10.74 0.00 0.00 3.96
73 74 4.229639 AGGAGATATCTGGAGTTGATGCA 58.770 43.478 10.74 0.00 0.00 3.96
74 75 4.888326 AGGAGATATCTGGAGTTGATGC 57.112 45.455 10.74 0.00 0.00 3.91
75 76 7.364585 GGGAATAGGAGATATCTGGAGTTGATG 60.365 44.444 10.74 0.00 0.00 3.07
76 77 6.671779 GGGAATAGGAGATATCTGGAGTTGAT 59.328 42.308 10.74 0.00 0.00 2.57
77 78 6.019748 GGGAATAGGAGATATCTGGAGTTGA 58.980 44.000 10.74 0.00 0.00 3.18
78 79 5.105554 CGGGAATAGGAGATATCTGGAGTTG 60.106 48.000 10.74 0.00 0.00 3.16
79 80 5.020132 CGGGAATAGGAGATATCTGGAGTT 58.980 45.833 10.74 0.00 0.00 3.01
80 81 4.605183 CGGGAATAGGAGATATCTGGAGT 58.395 47.826 10.74 0.00 0.00 3.85
81 82 3.383185 GCGGGAATAGGAGATATCTGGAG 59.617 52.174 10.74 0.00 0.00 3.86
82 83 3.011821 AGCGGGAATAGGAGATATCTGGA 59.988 47.826 10.74 0.00 0.00 3.86
83 84 3.370104 AGCGGGAATAGGAGATATCTGG 58.630 50.000 10.74 0.00 0.00 3.86
84 85 4.142049 GGAAGCGGGAATAGGAGATATCTG 60.142 50.000 10.74 0.00 0.00 2.90
85 86 4.027437 GGAAGCGGGAATAGGAGATATCT 58.973 47.826 4.47 4.47 0.00 1.98
86 87 3.769844 TGGAAGCGGGAATAGGAGATATC 59.230 47.826 0.00 0.00 0.00 1.63
87 88 3.515901 GTGGAAGCGGGAATAGGAGATAT 59.484 47.826 0.00 0.00 0.00 1.63
88 89 2.897969 GTGGAAGCGGGAATAGGAGATA 59.102 50.000 0.00 0.00 0.00 1.98
89 90 1.694696 GTGGAAGCGGGAATAGGAGAT 59.305 52.381 0.00 0.00 0.00 2.75
90 91 1.120530 GTGGAAGCGGGAATAGGAGA 58.879 55.000 0.00 0.00 0.00 3.71
91 92 1.069358 GAGTGGAAGCGGGAATAGGAG 59.931 57.143 0.00 0.00 0.00 3.69
92 93 1.120530 GAGTGGAAGCGGGAATAGGA 58.879 55.000 0.00 0.00 0.00 2.94
93 94 1.123928 AGAGTGGAAGCGGGAATAGG 58.876 55.000 0.00 0.00 0.00 2.57
94 95 2.432510 AGAAGAGTGGAAGCGGGAATAG 59.567 50.000 0.00 0.00 0.00 1.73
95 96 2.467880 AGAAGAGTGGAAGCGGGAATA 58.532 47.619 0.00 0.00 0.00 1.75
96 97 1.280457 AGAAGAGTGGAAGCGGGAAT 58.720 50.000 0.00 0.00 0.00 3.01
97 98 1.056660 AAGAAGAGTGGAAGCGGGAA 58.943 50.000 0.00 0.00 0.00 3.97
98 99 1.002087 GAAAGAAGAGTGGAAGCGGGA 59.998 52.381 0.00 0.00 0.00 5.14
99 100 1.002544 AGAAAGAAGAGTGGAAGCGGG 59.997 52.381 0.00 0.00 0.00 6.13
100 101 2.028567 AGAGAAAGAAGAGTGGAAGCGG 60.029 50.000 0.00 0.00 0.00 5.52
101 102 3.249917 GAGAGAAAGAAGAGTGGAAGCG 58.750 50.000 0.00 0.00 0.00 4.68
102 103 4.244862 CTGAGAGAAAGAAGAGTGGAAGC 58.755 47.826 0.00 0.00 0.00 3.86
103 104 5.467035 ACTGAGAGAAAGAAGAGTGGAAG 57.533 43.478 0.00 0.00 0.00 3.46
104 105 5.600484 AGAACTGAGAGAAAGAAGAGTGGAA 59.400 40.000 0.00 0.00 0.00 3.53
105 106 5.010516 CAGAACTGAGAGAAAGAAGAGTGGA 59.989 44.000 0.00 0.00 0.00 4.02
106 107 5.229423 CAGAACTGAGAGAAAGAAGAGTGG 58.771 45.833 0.00 0.00 0.00 4.00
107 108 4.685628 GCAGAACTGAGAGAAAGAAGAGTG 59.314 45.833 5.97 0.00 0.00 3.51
108 109 4.262420 GGCAGAACTGAGAGAAAGAAGAGT 60.262 45.833 5.97 0.00 0.00 3.24
109 110 4.244862 GGCAGAACTGAGAGAAAGAAGAG 58.755 47.826 5.97 0.00 0.00 2.85
110 111 3.305676 CGGCAGAACTGAGAGAAAGAAGA 60.306 47.826 5.97 0.00 0.00 2.87
111 112 2.992543 CGGCAGAACTGAGAGAAAGAAG 59.007 50.000 5.97 0.00 0.00 2.85
112 113 2.868044 GCGGCAGAACTGAGAGAAAGAA 60.868 50.000 5.97 0.00 0.00 2.52
113 114 1.337260 GCGGCAGAACTGAGAGAAAGA 60.337 52.381 5.97 0.00 0.00 2.52
114 115 1.074752 GCGGCAGAACTGAGAGAAAG 58.925 55.000 5.97 0.00 0.00 2.62
115 116 0.681733 AGCGGCAGAACTGAGAGAAA 59.318 50.000 1.45 0.00 0.00 2.52
116 117 1.545841 TAGCGGCAGAACTGAGAGAA 58.454 50.000 1.45 0.00 0.00 2.87
117 118 1.678627 GATAGCGGCAGAACTGAGAGA 59.321 52.381 1.45 0.00 0.00 3.10
118 119 1.680735 AGATAGCGGCAGAACTGAGAG 59.319 52.381 1.45 0.00 0.00 3.20
119 120 1.678627 GAGATAGCGGCAGAACTGAGA 59.321 52.381 1.45 0.00 0.00 3.27
120 121 1.269517 GGAGATAGCGGCAGAACTGAG 60.270 57.143 1.45 0.31 0.00 3.35
121 122 0.747255 GGAGATAGCGGCAGAACTGA 59.253 55.000 1.45 0.00 0.00 3.41
122 123 0.461548 TGGAGATAGCGGCAGAACTG 59.538 55.000 1.45 0.00 0.00 3.16
123 124 0.461961 GTGGAGATAGCGGCAGAACT 59.538 55.000 1.45 0.00 0.00 3.01
124 125 0.461961 AGTGGAGATAGCGGCAGAAC 59.538 55.000 1.45 0.00 0.00 3.01
125 126 1.195115 AAGTGGAGATAGCGGCAGAA 58.805 50.000 1.45 0.00 0.00 3.02
126 127 2.067365 TAAGTGGAGATAGCGGCAGA 57.933 50.000 1.45 0.00 0.00 4.26
127 128 3.393089 AATAAGTGGAGATAGCGGCAG 57.607 47.619 1.45 0.00 0.00 4.85
128 129 3.133901 TCAAATAAGTGGAGATAGCGGCA 59.866 43.478 1.45 0.00 0.00 5.69
129 130 3.728845 TCAAATAAGTGGAGATAGCGGC 58.271 45.455 0.00 0.00 0.00 6.53
130 131 5.788450 AGATCAAATAAGTGGAGATAGCGG 58.212 41.667 0.00 0.00 0.00 5.52
131 132 6.809196 GGTAGATCAAATAAGTGGAGATAGCG 59.191 42.308 0.00 0.00 0.00 4.26
132 133 7.671302 TGGTAGATCAAATAAGTGGAGATAGC 58.329 38.462 0.00 0.00 0.00 2.97
133 134 8.310382 CCTGGTAGATCAAATAAGTGGAGATAG 58.690 40.741 0.00 0.00 0.00 2.08
134 135 7.256332 GCCTGGTAGATCAAATAAGTGGAGATA 60.256 40.741 0.00 0.00 0.00 1.98
135 136 6.465035 GCCTGGTAGATCAAATAAGTGGAGAT 60.465 42.308 0.00 0.00 0.00 2.75
136 137 5.163301 GCCTGGTAGATCAAATAAGTGGAGA 60.163 44.000 0.00 0.00 0.00 3.71
137 138 5.059833 GCCTGGTAGATCAAATAAGTGGAG 58.940 45.833 0.00 0.00 0.00 3.86
138 139 4.721776 AGCCTGGTAGATCAAATAAGTGGA 59.278 41.667 0.00 0.00 0.00 4.02
139 140 5.041191 AGCCTGGTAGATCAAATAAGTGG 57.959 43.478 0.00 0.00 0.00 4.00
140 141 6.703607 CACTAGCCTGGTAGATCAAATAAGTG 59.296 42.308 10.15 0.00 0.00 3.16
141 142 6.384305 ACACTAGCCTGGTAGATCAAATAAGT 59.616 38.462 10.15 0.00 0.00 2.24
142 143 6.821388 ACACTAGCCTGGTAGATCAAATAAG 58.179 40.000 10.15 0.00 0.00 1.73
143 144 6.808321 ACACTAGCCTGGTAGATCAAATAA 57.192 37.500 10.15 0.00 0.00 1.40
144 145 7.907841 TTACACTAGCCTGGTAGATCAAATA 57.092 36.000 10.15 0.00 0.00 1.40
145 146 6.808321 TTACACTAGCCTGGTAGATCAAAT 57.192 37.500 10.15 0.00 0.00 2.32
146 147 6.614694 TTTACACTAGCCTGGTAGATCAAA 57.385 37.500 10.15 4.38 0.00 2.69
147 148 6.614694 TTTTACACTAGCCTGGTAGATCAA 57.385 37.500 10.15 0.00 0.00 2.57
148 149 6.382859 TCATTTTACACTAGCCTGGTAGATCA 59.617 38.462 10.15 0.00 0.00 2.92
149 150 6.817184 TCATTTTACACTAGCCTGGTAGATC 58.183 40.000 10.15 0.00 0.00 2.75
150 151 6.808321 TCATTTTACACTAGCCTGGTAGAT 57.192 37.500 10.15 1.29 0.00 1.98
151 152 6.614694 TTCATTTTACACTAGCCTGGTAGA 57.385 37.500 10.15 0.00 0.00 2.59
152 153 7.865706 ATTTCATTTTACACTAGCCTGGTAG 57.134 36.000 1.98 1.98 0.00 3.18
153 154 8.764558 TCTATTTCATTTTACACTAGCCTGGTA 58.235 33.333 0.00 0.00 0.00 3.25
154 155 7.630082 TCTATTTCATTTTACACTAGCCTGGT 58.370 34.615 0.00 0.00 0.00 4.00
155 156 8.398665 GTTCTATTTCATTTTACACTAGCCTGG 58.601 37.037 0.00 0.00 0.00 4.45
156 157 8.398665 GGTTCTATTTCATTTTACACTAGCCTG 58.601 37.037 0.00 0.00 0.00 4.85
157 158 8.107095 TGGTTCTATTTCATTTTACACTAGCCT 58.893 33.333 0.00 0.00 0.00 4.58
158 159 8.182227 GTGGTTCTATTTCATTTTACACTAGCC 58.818 37.037 0.00 0.00 0.00 3.93
159 160 8.726988 TGTGGTTCTATTTCATTTTACACTAGC 58.273 33.333 0.00 0.00 0.00 3.42
162 163 9.965824 CTTTGTGGTTCTATTTCATTTTACACT 57.034 29.630 0.00 0.00 0.00 3.55
163 164 8.699749 GCTTTGTGGTTCTATTTCATTTTACAC 58.300 33.333 0.00 0.00 0.00 2.90
164 165 8.637986 AGCTTTGTGGTTCTATTTCATTTTACA 58.362 29.630 0.00 0.00 0.00 2.41
165 166 9.476202 AAGCTTTGTGGTTCTATTTCATTTTAC 57.524 29.630 0.00 0.00 0.00 2.01
167 168 8.829612 CAAAGCTTTGTGGTTCTATTTCATTTT 58.170 29.630 27.59 0.00 35.02 1.82
168 169 7.041848 GCAAAGCTTTGTGGTTCTATTTCATTT 60.042 33.333 33.47 0.00 40.24 2.32
169 170 6.424812 GCAAAGCTTTGTGGTTCTATTTCATT 59.575 34.615 33.47 0.00 40.24 2.57
170 171 5.928264 GCAAAGCTTTGTGGTTCTATTTCAT 59.072 36.000 33.47 0.00 40.24 2.57
171 172 5.163468 TGCAAAGCTTTGTGGTTCTATTTCA 60.163 36.000 33.47 18.70 40.24 2.69
172 173 5.288804 TGCAAAGCTTTGTGGTTCTATTTC 58.711 37.500 33.47 16.66 40.24 2.17
173 174 5.275067 TGCAAAGCTTTGTGGTTCTATTT 57.725 34.783 33.47 0.00 40.24 1.40
174 175 4.935352 TGCAAAGCTTTGTGGTTCTATT 57.065 36.364 33.47 0.00 40.24 1.73
175 176 6.780457 ATATGCAAAGCTTTGTGGTTCTAT 57.220 33.333 33.47 19.71 40.24 1.98
176 177 7.880160 ATATATGCAAAGCTTTGTGGTTCTA 57.120 32.000 33.47 20.06 40.24 2.10
177 178 6.780457 ATATATGCAAAGCTTTGTGGTTCT 57.220 33.333 33.47 18.86 40.24 3.01
178 179 6.813152 ACAATATATGCAAAGCTTTGTGGTTC 59.187 34.615 33.47 20.21 40.24 3.62
179 180 6.591062 CACAATATATGCAAAGCTTTGTGGTT 59.409 34.615 33.47 21.00 39.00 3.67
180 181 6.101332 CACAATATATGCAAAGCTTTGTGGT 58.899 36.000 33.47 23.19 39.00 4.16
181 182 6.578020 CACAATATATGCAAAGCTTTGTGG 57.422 37.500 33.47 17.03 39.00 4.17
182 183 6.035220 CACCACAATATATGCAAAGCTTTGTG 59.965 38.462 33.47 24.95 41.12 3.33
183 184 6.071447 TCACCACAATATATGCAAAGCTTTGT 60.071 34.615 33.47 20.92 40.24 2.83
184 185 6.331845 TCACCACAATATATGCAAAGCTTTG 58.668 36.000 30.70 30.70 41.03 2.77
185 186 6.528537 TCACCACAATATATGCAAAGCTTT 57.471 33.333 5.69 5.69 0.00 3.51
186 187 6.377996 TCTTCACCACAATATATGCAAAGCTT 59.622 34.615 0.00 0.00 0.00 3.74
187 188 5.887598 TCTTCACCACAATATATGCAAAGCT 59.112 36.000 0.00 0.00 0.00 3.74
188 189 6.135290 TCTTCACCACAATATATGCAAAGC 57.865 37.500 0.00 0.00 0.00 3.51
189 190 7.646526 CACATCTTCACCACAATATATGCAAAG 59.353 37.037 0.00 0.00 0.00 2.77
190 191 7.416551 CCACATCTTCACCACAATATATGCAAA 60.417 37.037 0.00 0.00 0.00 3.68
191 192 6.039605 CCACATCTTCACCACAATATATGCAA 59.960 38.462 0.00 0.00 0.00 4.08
192 193 5.532032 CCACATCTTCACCACAATATATGCA 59.468 40.000 0.00 0.00 0.00 3.96
193 194 5.532406 ACCACATCTTCACCACAATATATGC 59.468 40.000 0.00 0.00 0.00 3.14
194 195 7.067372 ACAACCACATCTTCACCACAATATATG 59.933 37.037 0.00 0.00 0.00 1.78
195 196 7.118723 ACAACCACATCTTCACCACAATATAT 58.881 34.615 0.00 0.00 0.00 0.86
196 197 6.480763 ACAACCACATCTTCACCACAATATA 58.519 36.000 0.00 0.00 0.00 0.86
197 198 5.324409 ACAACCACATCTTCACCACAATAT 58.676 37.500 0.00 0.00 0.00 1.28
198 199 4.724399 ACAACCACATCTTCACCACAATA 58.276 39.130 0.00 0.00 0.00 1.90
199 200 3.565307 ACAACCACATCTTCACCACAAT 58.435 40.909 0.00 0.00 0.00 2.71
200 201 3.011566 ACAACCACATCTTCACCACAA 57.988 42.857 0.00 0.00 0.00 3.33
201 202 2.727123 ACAACCACATCTTCACCACA 57.273 45.000 0.00 0.00 0.00 4.17
202 203 7.173218 CCATATATACAACCACATCTTCACCAC 59.827 40.741 0.00 0.00 0.00 4.16
203 204 7.071824 TCCATATATACAACCACATCTTCACCA 59.928 37.037 0.00 0.00 0.00 4.17
204 205 7.450074 TCCATATATACAACCACATCTTCACC 58.550 38.462 0.00 0.00 0.00 4.02
205 206 8.367911 TCTCCATATATACAACCACATCTTCAC 58.632 37.037 0.00 0.00 0.00 3.18
206 207 8.367911 GTCTCCATATATACAACCACATCTTCA 58.632 37.037 0.00 0.00 0.00 3.02
207 208 8.367911 TGTCTCCATATATACAACCACATCTTC 58.632 37.037 0.00 0.00 0.00 2.87
208 209 8.150945 GTGTCTCCATATATACAACCACATCTT 58.849 37.037 0.00 0.00 0.00 2.40
209 210 7.290014 TGTGTCTCCATATATACAACCACATCT 59.710 37.037 0.00 0.00 0.00 2.90
210 211 7.441836 TGTGTCTCCATATATACAACCACATC 58.558 38.462 0.00 0.00 0.00 3.06
211 212 7.373617 TGTGTCTCCATATATACAACCACAT 57.626 36.000 0.00 0.00 0.00 3.21
212 213 6.800072 TGTGTCTCCATATATACAACCACA 57.200 37.500 0.00 0.00 0.00 4.17
213 214 7.045416 TGTTGTGTCTCCATATATACAACCAC 58.955 38.462 17.93 9.40 44.22 4.16
214 215 7.189079 TGTTGTGTCTCCATATATACAACCA 57.811 36.000 17.93 8.54 44.22 3.67
215 216 8.677148 AATGTTGTGTCTCCATATATACAACC 57.323 34.615 17.93 6.82 44.22 3.77
226 227 8.243426 GCTTATTTGAATAATGTTGTGTCTCCA 58.757 33.333 0.00 0.00 31.03 3.86
227 228 7.429340 CGCTTATTTGAATAATGTTGTGTCTCC 59.571 37.037 0.00 0.00 31.03 3.71
228 229 8.175069 TCGCTTATTTGAATAATGTTGTGTCTC 58.825 33.333 0.00 0.00 31.03 3.36
229 230 8.039603 TCGCTTATTTGAATAATGTTGTGTCT 57.960 30.769 0.00 0.00 31.03 3.41
230 231 8.667987 TTCGCTTATTTGAATAATGTTGTGTC 57.332 30.769 0.00 0.00 31.03 3.67
231 232 9.128107 CTTTCGCTTATTTGAATAATGTTGTGT 57.872 29.630 0.00 0.00 31.03 3.72
232 233 9.128107 ACTTTCGCTTATTTGAATAATGTTGTG 57.872 29.630 0.00 0.00 31.03 3.33
233 234 9.128107 CACTTTCGCTTATTTGAATAATGTTGT 57.872 29.630 0.00 0.00 31.03 3.32
234 235 8.586273 CCACTTTCGCTTATTTGAATAATGTTG 58.414 33.333 0.00 0.00 31.03 3.33
235 236 8.303876 ACCACTTTCGCTTATTTGAATAATGTT 58.696 29.630 0.00 0.00 31.03 2.71
236 237 7.826690 ACCACTTTCGCTTATTTGAATAATGT 58.173 30.769 0.00 0.00 31.03 2.71
237 238 8.586273 CAACCACTTTCGCTTATTTGAATAATG 58.414 33.333 0.00 0.00 31.03 1.90
238 239 8.303876 ACAACCACTTTCGCTTATTTGAATAAT 58.696 29.630 0.00 0.00 31.03 1.28
239 240 7.593273 CACAACCACTTTCGCTTATTTGAATAA 59.407 33.333 0.00 0.00 0.00 1.40
240 241 7.081349 CACAACCACTTTCGCTTATTTGAATA 58.919 34.615 0.00 0.00 0.00 1.75
241 242 5.920273 CACAACCACTTTCGCTTATTTGAAT 59.080 36.000 0.00 0.00 0.00 2.57
242 243 5.277825 CACAACCACTTTCGCTTATTTGAA 58.722 37.500 0.00 0.00 0.00 2.69
243 244 4.261405 CCACAACCACTTTCGCTTATTTGA 60.261 41.667 0.00 0.00 0.00 2.69
244 245 3.980775 CCACAACCACTTTCGCTTATTTG 59.019 43.478 0.00 0.00 0.00 2.32
245 246 3.634910 ACCACAACCACTTTCGCTTATTT 59.365 39.130 0.00 0.00 0.00 1.40
246 247 3.219281 ACCACAACCACTTTCGCTTATT 58.781 40.909 0.00 0.00 0.00 1.40
247 248 2.858745 ACCACAACCACTTTCGCTTAT 58.141 42.857 0.00 0.00 0.00 1.73
248 249 2.335316 ACCACAACCACTTTCGCTTA 57.665 45.000 0.00 0.00 0.00 3.09
249 250 2.335316 TACCACAACCACTTTCGCTT 57.665 45.000 0.00 0.00 0.00 4.68
250 251 2.561478 ATACCACAACCACTTTCGCT 57.439 45.000 0.00 0.00 0.00 4.93
251 252 7.386848 ACATATATATACCACAACCACTTTCGC 59.613 37.037 0.00 0.00 0.00 4.70
252 253 8.827177 ACATATATATACCACAACCACTTTCG 57.173 34.615 0.00 0.00 0.00 3.46
255 256 9.720769 GCTTACATATATATACCACAACCACTT 57.279 33.333 0.00 0.00 0.00 3.16
256 257 9.101325 AGCTTACATATATATACCACAACCACT 57.899 33.333 0.00 0.00 0.00 4.00
271 272 9.315525 TGTGTGCGTAAATTTAGCTTACATATA 57.684 29.630 15.79 6.21 30.96 0.86
272 273 8.203937 TGTGTGCGTAAATTTAGCTTACATAT 57.796 30.769 15.79 0.00 30.96 1.78
273 274 7.598189 TGTGTGCGTAAATTTAGCTTACATA 57.402 32.000 15.79 10.58 30.96 2.29
274 275 6.489127 TGTGTGCGTAAATTTAGCTTACAT 57.511 33.333 15.79 0.00 30.96 2.29
275 276 5.926214 TGTGTGCGTAAATTTAGCTTACA 57.074 34.783 15.79 15.88 30.96 2.41
276 277 7.073265 TCTTTGTGTGCGTAAATTTAGCTTAC 58.927 34.615 15.79 14.39 0.00 2.34
277 278 7.171848 TCTCTTTGTGTGCGTAAATTTAGCTTA 59.828 33.333 15.79 0.00 0.00 3.09
278 279 6.017440 TCTCTTTGTGTGCGTAAATTTAGCTT 60.017 34.615 15.79 0.00 0.00 3.74
279 280 5.468746 TCTCTTTGTGTGCGTAAATTTAGCT 59.531 36.000 15.79 0.00 0.00 3.32
280 281 5.685841 TCTCTTTGTGTGCGTAAATTTAGC 58.314 37.500 0.00 5.56 0.00 3.09
281 282 7.298122 ACATCTCTTTGTGTGCGTAAATTTAG 58.702 34.615 0.00 0.00 0.00 1.85
282 283 7.197071 ACATCTCTTTGTGTGCGTAAATTTA 57.803 32.000 0.00 0.00 0.00 1.40
283 284 6.072112 ACATCTCTTTGTGTGCGTAAATTT 57.928 33.333 0.00 0.00 0.00 1.82
284 285 5.689383 ACATCTCTTTGTGTGCGTAAATT 57.311 34.783 0.00 0.00 0.00 1.82
285 286 5.689383 AACATCTCTTTGTGTGCGTAAAT 57.311 34.783 0.00 0.00 0.00 1.40
286 287 5.270083 CAAACATCTCTTTGTGTGCGTAAA 58.730 37.500 0.00 0.00 28.55 2.01
287 288 4.260990 CCAAACATCTCTTTGTGTGCGTAA 60.261 41.667 0.00 0.00 34.13 3.18
288 289 3.249799 CCAAACATCTCTTTGTGTGCGTA 59.750 43.478 0.00 0.00 34.13 4.42
289 290 2.033299 CCAAACATCTCTTTGTGTGCGT 59.967 45.455 0.00 0.00 34.13 5.24
290 291 2.033299 ACCAAACATCTCTTTGTGTGCG 59.967 45.455 0.00 0.00 34.13 5.34
291 292 3.066621 TCACCAAACATCTCTTTGTGTGC 59.933 43.478 0.00 0.00 34.13 4.57
292 293 4.898829 TCACCAAACATCTCTTTGTGTG 57.101 40.909 0.00 0.00 35.64 3.82
293 294 4.949856 ACTTCACCAAACATCTCTTTGTGT 59.050 37.500 0.00 0.00 30.33 3.72
294 295 5.505173 ACTTCACCAAACATCTCTTTGTG 57.495 39.130 0.00 0.00 30.33 3.33
295 296 7.823745 ATTACTTCACCAAACATCTCTTTGT 57.176 32.000 0.00 0.00 30.33 2.83
298 299 9.965902 AGATAATTACTTCACCAAACATCTCTT 57.034 29.630 0.00 0.00 0.00 2.85
299 300 9.965902 AAGATAATTACTTCACCAAACATCTCT 57.034 29.630 0.00 0.00 0.00 3.10
300 301 9.994432 CAAGATAATTACTTCACCAAACATCTC 57.006 33.333 0.00 0.00 0.00 2.75
301 302 9.520515 ACAAGATAATTACTTCACCAAACATCT 57.479 29.630 0.00 0.00 0.00 2.90
304 305 9.126151 TGAACAAGATAATTACTTCACCAAACA 57.874 29.630 0.00 0.00 0.00 2.83
305 306 9.394477 GTGAACAAGATAATTACTTCACCAAAC 57.606 33.333 0.00 0.00 0.00 2.93
306 307 9.126151 TGTGAACAAGATAATTACTTCACCAAA 57.874 29.630 13.68 1.41 0.00 3.28
307 308 8.684386 TGTGAACAAGATAATTACTTCACCAA 57.316 30.769 13.68 1.85 0.00 3.67
308 309 8.862325 ATGTGAACAAGATAATTACTTCACCA 57.138 30.769 13.68 7.28 0.00 4.17
313 314 9.747898 TGGGTAATGTGAACAAGATAATTACTT 57.252 29.630 0.00 0.00 33.22 2.24
314 315 9.174166 GTGGGTAATGTGAACAAGATAATTACT 57.826 33.333 0.00 0.00 33.22 2.24
315 316 8.403236 GGTGGGTAATGTGAACAAGATAATTAC 58.597 37.037 0.00 0.00 32.34 1.89
316 317 8.333235 AGGTGGGTAATGTGAACAAGATAATTA 58.667 33.333 0.00 0.00 0.00 1.40
317 318 7.182060 AGGTGGGTAATGTGAACAAGATAATT 58.818 34.615 0.00 0.00 0.00 1.40
318 319 6.731467 AGGTGGGTAATGTGAACAAGATAAT 58.269 36.000 0.00 0.00 0.00 1.28
319 320 6.134535 AGGTGGGTAATGTGAACAAGATAA 57.865 37.500 0.00 0.00 0.00 1.75
320 321 5.772393 AGGTGGGTAATGTGAACAAGATA 57.228 39.130 0.00 0.00 0.00 1.98
321 322 4.657814 AGGTGGGTAATGTGAACAAGAT 57.342 40.909 0.00 0.00 0.00 2.40
322 323 4.595781 AGTAGGTGGGTAATGTGAACAAGA 59.404 41.667 0.00 0.00 0.00 3.02
323 324 4.906618 AGTAGGTGGGTAATGTGAACAAG 58.093 43.478 0.00 0.00 0.00 3.16
324 325 4.986054 AGTAGGTGGGTAATGTGAACAA 57.014 40.909 0.00 0.00 0.00 2.83
325 326 4.103469 ACAAGTAGGTGGGTAATGTGAACA 59.897 41.667 0.00 0.00 0.00 3.18
326 327 4.648651 ACAAGTAGGTGGGTAATGTGAAC 58.351 43.478 0.00 0.00 0.00 3.18
327 328 4.986054 ACAAGTAGGTGGGTAATGTGAA 57.014 40.909 0.00 0.00 0.00 3.18
328 329 4.561938 CGAACAAGTAGGTGGGTAATGTGA 60.562 45.833 0.00 0.00 0.00 3.58
329 330 3.682858 CGAACAAGTAGGTGGGTAATGTG 59.317 47.826 0.00 0.00 0.00 3.21
330 331 3.867216 GCGAACAAGTAGGTGGGTAATGT 60.867 47.826 0.00 0.00 0.00 2.71
331 332 2.676342 GCGAACAAGTAGGTGGGTAATG 59.324 50.000 0.00 0.00 0.00 1.90
332 333 2.303600 TGCGAACAAGTAGGTGGGTAAT 59.696 45.455 0.00 0.00 0.00 1.89
333 334 1.693062 TGCGAACAAGTAGGTGGGTAA 59.307 47.619 0.00 0.00 0.00 2.85
334 335 1.340088 TGCGAACAAGTAGGTGGGTA 58.660 50.000 0.00 0.00 0.00 3.69
335 336 0.690762 ATGCGAACAAGTAGGTGGGT 59.309 50.000 0.00 0.00 0.00 4.51
336 337 1.086696 CATGCGAACAAGTAGGTGGG 58.913 55.000 0.00 0.00 0.00 4.61
337 338 1.464608 CACATGCGAACAAGTAGGTGG 59.535 52.381 0.00 0.00 35.48 4.61
338 339 2.412870 TCACATGCGAACAAGTAGGTG 58.587 47.619 0.00 0.00 39.27 4.00
339 340 2.831685 TCACATGCGAACAAGTAGGT 57.168 45.000 0.00 0.00 0.00 3.08
340 341 3.261580 TCATCACATGCGAACAAGTAGG 58.738 45.455 0.00 0.00 0.00 3.18
341 342 4.926860 TTCATCACATGCGAACAAGTAG 57.073 40.909 0.00 0.00 0.00 2.57
342 343 5.878332 AATTCATCACATGCGAACAAGTA 57.122 34.783 0.00 0.00 0.00 2.24
343 344 4.771590 AATTCATCACATGCGAACAAGT 57.228 36.364 0.00 0.00 0.00 3.16
344 345 5.172591 GCATAATTCATCACATGCGAACAAG 59.827 40.000 0.00 0.00 34.96 3.16
345 346 5.036090 GCATAATTCATCACATGCGAACAA 58.964 37.500 0.00 0.00 34.96 2.83
346 347 4.336153 AGCATAATTCATCACATGCGAACA 59.664 37.500 0.00 0.00 46.54 3.18
347 348 4.852138 AGCATAATTCATCACATGCGAAC 58.148 39.130 0.00 0.00 46.54 3.95
348 349 5.759763 ACTAGCATAATTCATCACATGCGAA 59.240 36.000 0.00 0.00 46.54 4.70
349 350 5.299949 ACTAGCATAATTCATCACATGCGA 58.700 37.500 0.00 0.00 46.54 5.10
350 351 5.602458 ACTAGCATAATTCATCACATGCG 57.398 39.130 0.00 0.00 46.54 4.73
351 352 6.962686 TGAACTAGCATAATTCATCACATGC 58.037 36.000 0.00 1.15 43.24 4.06
352 353 9.394477 CATTGAACTAGCATAATTCATCACATG 57.606 33.333 0.00 0.00 32.61 3.21
353 354 8.080417 GCATTGAACTAGCATAATTCATCACAT 58.920 33.333 0.00 0.00 32.61 3.21
354 355 7.420002 GCATTGAACTAGCATAATTCATCACA 58.580 34.615 0.00 0.00 32.61 3.58
355 356 6.860023 GGCATTGAACTAGCATAATTCATCAC 59.140 38.462 0.00 0.00 32.61 3.06
356 357 6.016024 GGGCATTGAACTAGCATAATTCATCA 60.016 38.462 0.00 0.00 32.61 3.07
357 358 6.208204 AGGGCATTGAACTAGCATAATTCATC 59.792 38.462 0.00 0.00 32.61 2.92
358 359 6.073314 AGGGCATTGAACTAGCATAATTCAT 58.927 36.000 0.00 0.00 32.61 2.57
359 360 5.448654 AGGGCATTGAACTAGCATAATTCA 58.551 37.500 0.00 0.00 0.00 2.57
360 361 6.396829 AAGGGCATTGAACTAGCATAATTC 57.603 37.500 0.00 0.00 0.00 2.17
361 362 6.796785 AAAGGGCATTGAACTAGCATAATT 57.203 33.333 0.00 0.00 0.00 1.40
362 363 6.796785 AAAAGGGCATTGAACTAGCATAAT 57.203 33.333 0.00 0.00 0.00 1.28
363 364 6.603940 AAAAAGGGCATTGAACTAGCATAA 57.396 33.333 0.00 0.00 0.00 1.90
384 385 7.202526 CACTGAACTTGCATTTCTCCTAAAAA 58.797 34.615 9.35 0.00 0.00 1.94
385 386 6.735694 GCACTGAACTTGCATTTCTCCTAAAA 60.736 38.462 9.35 0.00 39.93 1.52
386 387 5.278463 GCACTGAACTTGCATTTCTCCTAAA 60.278 40.000 9.35 0.00 39.93 1.85
387 388 4.216257 GCACTGAACTTGCATTTCTCCTAA 59.784 41.667 9.35 0.00 39.93 2.69
388 389 3.753272 GCACTGAACTTGCATTTCTCCTA 59.247 43.478 9.35 0.00 39.93 2.94
389 390 2.555757 GCACTGAACTTGCATTTCTCCT 59.444 45.455 9.35 0.00 39.93 3.69
390 391 2.352127 GGCACTGAACTTGCATTTCTCC 60.352 50.000 9.35 3.46 42.12 3.71
391 392 2.555757 AGGCACTGAACTTGCATTTCTC 59.444 45.455 9.35 0.00 42.12 2.87
392 393 2.590821 AGGCACTGAACTTGCATTTCT 58.409 42.857 9.35 0.00 42.12 2.52
393 394 3.054878 CAAGGCACTGAACTTGCATTTC 58.945 45.455 0.00 0.00 40.93 2.17
394 395 2.694628 TCAAGGCACTGAACTTGCATTT 59.305 40.909 8.35 0.00 40.93 2.32
395 396 2.035066 GTCAAGGCACTGAACTTGCATT 59.965 45.455 8.35 0.00 44.38 3.56
396 397 1.610522 GTCAAGGCACTGAACTTGCAT 59.389 47.619 8.35 0.00 42.82 3.96
397 398 1.024271 GTCAAGGCACTGAACTTGCA 58.976 50.000 8.35 0.00 42.82 4.08
398 399 1.002033 CTGTCAAGGCACTGAACTTGC 60.002 52.381 8.35 0.00 42.82 4.01
399 400 2.292267 ACTGTCAAGGCACTGAACTTG 58.708 47.619 7.31 7.31 44.09 3.16
400 401 2.684881 CAACTGTCAAGGCACTGAACTT 59.315 45.455 0.00 0.00 40.86 2.66
401 402 2.092968 TCAACTGTCAAGGCACTGAACT 60.093 45.455 0.00 0.00 40.86 3.01
402 403 2.032178 GTCAACTGTCAAGGCACTGAAC 59.968 50.000 0.00 0.00 40.86 3.18
403 404 2.288666 GTCAACTGTCAAGGCACTGAA 58.711 47.619 0.00 0.00 40.86 3.02
404 405 1.209261 TGTCAACTGTCAAGGCACTGA 59.791 47.619 0.00 0.00 40.86 3.41
405 406 1.667236 TGTCAACTGTCAAGGCACTG 58.333 50.000 0.00 0.00 40.86 3.66
407 408 1.335324 GCATGTCAACTGTCAAGGCAC 60.335 52.381 0.00 0.00 0.00 5.01
408 409 0.953727 GCATGTCAACTGTCAAGGCA 59.046 50.000 0.00 0.00 0.00 4.75
409 410 0.953727 TGCATGTCAACTGTCAAGGC 59.046 50.000 0.00 0.00 0.00 4.35
410 411 2.225019 GTCTGCATGTCAACTGTCAAGG 59.775 50.000 0.00 0.00 0.00 3.61
411 412 2.225019 GGTCTGCATGTCAACTGTCAAG 59.775 50.000 0.00 0.00 0.00 3.02
412 413 2.221169 GGTCTGCATGTCAACTGTCAA 58.779 47.619 0.00 0.00 0.00 3.18
413 414 1.543208 GGGTCTGCATGTCAACTGTCA 60.543 52.381 0.00 0.00 0.00 3.58
414 415 1.160137 GGGTCTGCATGTCAACTGTC 58.840 55.000 0.00 0.00 0.00 3.51
415 416 0.250901 GGGGTCTGCATGTCAACTGT 60.251 55.000 0.00 0.00 0.00 3.55
416 417 0.250858 TGGGGTCTGCATGTCAACTG 60.251 55.000 0.00 0.00 0.00 3.16
417 418 0.250901 GTGGGGTCTGCATGTCAACT 60.251 55.000 0.00 0.00 0.00 3.16
418 419 0.250901 AGTGGGGTCTGCATGTCAAC 60.251 55.000 0.00 0.00 0.00 3.18
419 420 0.036732 GAGTGGGGTCTGCATGTCAA 59.963 55.000 0.00 0.00 0.00 3.18
420 421 1.126948 TGAGTGGGGTCTGCATGTCA 61.127 55.000 0.00 0.00 0.00 3.58
421 422 0.674895 GTGAGTGGGGTCTGCATGTC 60.675 60.000 0.00 0.00 0.00 3.06
422 423 1.130054 AGTGAGTGGGGTCTGCATGT 61.130 55.000 0.00 0.00 0.00 3.21
423 424 0.392193 GAGTGAGTGGGGTCTGCATG 60.392 60.000 0.00 0.00 0.00 4.06
424 425 0.546267 AGAGTGAGTGGGGTCTGCAT 60.546 55.000 0.00 0.00 0.00 3.96
425 426 0.114364 TAGAGTGAGTGGGGTCTGCA 59.886 55.000 0.00 0.00 0.00 4.41
426 427 0.820871 CTAGAGTGAGTGGGGTCTGC 59.179 60.000 0.00 0.00 0.00 4.26
427 428 2.223803 ACTAGAGTGAGTGGGGTCTG 57.776 55.000 0.00 0.00 0.00 3.51
428 429 2.158295 ACAACTAGAGTGAGTGGGGTCT 60.158 50.000 0.00 0.00 0.00 3.85
429 430 2.249139 ACAACTAGAGTGAGTGGGGTC 58.751 52.381 0.00 0.00 0.00 4.46
430 431 2.400467 ACAACTAGAGTGAGTGGGGT 57.600 50.000 0.00 0.00 0.00 4.95
431 432 2.028020 GGAACAACTAGAGTGAGTGGGG 60.028 54.545 0.00 0.00 0.00 4.96
432 433 2.028020 GGGAACAACTAGAGTGAGTGGG 60.028 54.545 0.00 0.00 0.00 4.61
433 434 2.028020 GGGGAACAACTAGAGTGAGTGG 60.028 54.545 0.00 0.00 0.00 4.00
434 435 2.028020 GGGGGAACAACTAGAGTGAGTG 60.028 54.545 0.00 0.00 0.00 3.51
435 436 2.258109 GGGGGAACAACTAGAGTGAGT 58.742 52.381 0.00 0.00 0.00 3.41
436 437 2.028020 GTGGGGGAACAACTAGAGTGAG 60.028 54.545 0.00 0.00 0.00 3.51
437 438 1.975680 GTGGGGGAACAACTAGAGTGA 59.024 52.381 0.00 0.00 0.00 3.41
438 439 1.978580 AGTGGGGGAACAACTAGAGTG 59.021 52.381 0.00 0.00 0.00 3.51
439 440 2.417719 AGTGGGGGAACAACTAGAGT 57.582 50.000 0.00 0.00 0.00 3.24
440 441 3.056035 GTGTAGTGGGGGAACAACTAGAG 60.056 52.174 0.00 0.00 33.32 2.43
441 442 2.901839 GTGTAGTGGGGGAACAACTAGA 59.098 50.000 0.00 0.00 33.32 2.43
442 443 2.635915 TGTGTAGTGGGGGAACAACTAG 59.364 50.000 0.00 0.00 33.32 2.57
443 444 2.692024 TGTGTAGTGGGGGAACAACTA 58.308 47.619 0.00 0.00 31.89 2.24
444 445 1.513858 TGTGTAGTGGGGGAACAACT 58.486 50.000 0.00 0.00 33.79 3.16
445 446 2.579410 ATGTGTAGTGGGGGAACAAC 57.421 50.000 0.00 0.00 0.00 3.32
446 447 4.400120 GTTTATGTGTAGTGGGGGAACAA 58.600 43.478 0.00 0.00 0.00 2.83
447 448 3.244981 GGTTTATGTGTAGTGGGGGAACA 60.245 47.826 0.00 0.00 0.00 3.18
448 449 3.349927 GGTTTATGTGTAGTGGGGGAAC 58.650 50.000 0.00 0.00 0.00 3.62
449 450 2.027007 CGGTTTATGTGTAGTGGGGGAA 60.027 50.000 0.00 0.00 0.00 3.97
450 451 1.555992 CGGTTTATGTGTAGTGGGGGA 59.444 52.381 0.00 0.00 0.00 4.81
451 452 1.555992 TCGGTTTATGTGTAGTGGGGG 59.444 52.381 0.00 0.00 0.00 5.40
452 453 3.553828 ATCGGTTTATGTGTAGTGGGG 57.446 47.619 0.00 0.00 0.00 4.96
453 454 5.524971 TCTATCGGTTTATGTGTAGTGGG 57.475 43.478 0.00 0.00 0.00 4.61
454 455 8.433421 AAATTCTATCGGTTTATGTGTAGTGG 57.567 34.615 0.00 0.00 0.00 4.00
486 487 9.778741 CCTCAACAATAGCAGTTATTAGGATTA 57.221 33.333 0.00 0.00 30.75 1.75
487 488 7.721399 CCCTCAACAATAGCAGTTATTAGGATT 59.279 37.037 5.51 0.00 30.75 3.01
488 489 7.147302 ACCCTCAACAATAGCAGTTATTAGGAT 60.147 37.037 5.51 0.00 30.75 3.24
489 490 6.157994 ACCCTCAACAATAGCAGTTATTAGGA 59.842 38.462 5.51 0.00 30.75 2.94
490 491 6.357367 ACCCTCAACAATAGCAGTTATTAGG 58.643 40.000 0.00 0.00 30.75 2.69
491 492 7.865706 AACCCTCAACAATAGCAGTTATTAG 57.134 36.000 0.00 0.00 30.75 1.73
492 493 9.742144 TTAAACCCTCAACAATAGCAGTTATTA 57.258 29.630 0.00 0.00 30.75 0.98
493 494 8.644374 TTAAACCCTCAACAATAGCAGTTATT 57.356 30.769 0.00 0.00 32.08 1.40
494 495 7.888546 ACTTAAACCCTCAACAATAGCAGTTAT 59.111 33.333 0.00 0.00 0.00 1.89
495 496 7.228590 ACTTAAACCCTCAACAATAGCAGTTA 58.771 34.615 0.00 0.00 0.00 2.24
496 497 6.068670 ACTTAAACCCTCAACAATAGCAGTT 58.931 36.000 0.00 0.00 0.00 3.16
497 498 5.631119 ACTTAAACCCTCAACAATAGCAGT 58.369 37.500 0.00 0.00 0.00 4.40
498 499 6.016276 ACAACTTAAACCCTCAACAATAGCAG 60.016 38.462 0.00 0.00 0.00 4.24
499 500 5.830991 ACAACTTAAACCCTCAACAATAGCA 59.169 36.000 0.00 0.00 0.00 3.49
500 501 6.149633 CACAACTTAAACCCTCAACAATAGC 58.850 40.000 0.00 0.00 0.00 2.97
501 502 6.016276 AGCACAACTTAAACCCTCAACAATAG 60.016 38.462 0.00 0.00 0.00 1.73
502 503 5.830991 AGCACAACTTAAACCCTCAACAATA 59.169 36.000 0.00 0.00 0.00 1.90
503 504 4.649218 AGCACAACTTAAACCCTCAACAAT 59.351 37.500 0.00 0.00 0.00 2.71
504 505 4.020543 AGCACAACTTAAACCCTCAACAA 58.979 39.130 0.00 0.00 0.00 2.83
505 506 3.626930 AGCACAACTTAAACCCTCAACA 58.373 40.909 0.00 0.00 0.00 3.33
506 507 3.630312 TGAGCACAACTTAAACCCTCAAC 59.370 43.478 0.00 0.00 0.00 3.18
507 508 3.630312 GTGAGCACAACTTAAACCCTCAA 59.370 43.478 0.00 0.00 30.64 3.02
508 509 3.211045 GTGAGCACAACTTAAACCCTCA 58.789 45.455 0.00 0.00 0.00 3.86
509 510 2.552743 GGTGAGCACAACTTAAACCCTC 59.447 50.000 2.75 0.00 0.00 4.30
510 511 2.583143 GGTGAGCACAACTTAAACCCT 58.417 47.619 2.75 0.00 0.00 4.34
511 512 1.265905 CGGTGAGCACAACTTAAACCC 59.734 52.381 2.75 0.00 0.00 4.11
512 513 1.944709 ACGGTGAGCACAACTTAAACC 59.055 47.619 2.75 0.00 0.00 3.27
513 514 2.353579 ACACGGTGAGCACAACTTAAAC 59.646 45.455 16.29 0.00 0.00 2.01
514 515 2.610374 GACACGGTGAGCACAACTTAAA 59.390 45.455 16.29 0.00 0.00 1.52
515 516 2.159014 AGACACGGTGAGCACAACTTAA 60.159 45.455 16.29 0.00 0.00 1.85
516 517 1.411246 AGACACGGTGAGCACAACTTA 59.589 47.619 16.29 0.00 0.00 2.24
517 518 0.178068 AGACACGGTGAGCACAACTT 59.822 50.000 16.29 0.00 0.00 2.66
518 519 0.178068 AAGACACGGTGAGCACAACT 59.822 50.000 16.29 0.02 0.00 3.16
519 520 1.014352 AAAGACACGGTGAGCACAAC 58.986 50.000 16.29 0.00 0.00 3.32
520 521 2.605837 TAAAGACACGGTGAGCACAA 57.394 45.000 16.29 0.00 0.00 3.33
521 522 2.605837 TTAAAGACACGGTGAGCACA 57.394 45.000 16.29 0.00 0.00 4.57
522 523 2.870411 ACTTTAAAGACACGGTGAGCAC 59.130 45.455 21.92 3.50 0.00 4.40
523 524 3.188159 ACTTTAAAGACACGGTGAGCA 57.812 42.857 21.92 0.00 0.00 4.26
524 525 5.390567 CCATAACTTTAAAGACACGGTGAGC 60.391 44.000 21.92 6.40 0.00 4.26
525 526 5.929992 TCCATAACTTTAAAGACACGGTGAG 59.070 40.000 21.92 2.08 0.00 3.51
526 527 5.856156 TCCATAACTTTAAAGACACGGTGA 58.144 37.500 21.92 6.41 0.00 4.02
527 528 6.737254 ATCCATAACTTTAAAGACACGGTG 57.263 37.500 21.92 6.58 0.00 4.94
528 529 7.664318 AGAAATCCATAACTTTAAAGACACGGT 59.336 33.333 21.92 0.00 0.00 4.83
529 530 8.040716 AGAAATCCATAACTTTAAAGACACGG 57.959 34.615 21.92 15.05 0.00 4.94
530 531 8.175716 GGAGAAATCCATAACTTTAAAGACACG 58.824 37.037 21.92 7.24 0.00 4.49
531 532 8.459635 GGGAGAAATCCATAACTTTAAAGACAC 58.540 37.037 21.92 1.91 0.00 3.67
532 533 8.167392 TGGGAGAAATCCATAACTTTAAAGACA 58.833 33.333 21.92 8.86 0.00 3.41
533 534 8.459635 GTGGGAGAAATCCATAACTTTAAAGAC 58.540 37.037 21.92 0.00 36.58 3.01
534 535 7.614192 GGTGGGAGAAATCCATAACTTTAAAGA 59.386 37.037 21.92 0.30 36.58 2.52
535 536 7.396055 TGGTGGGAGAAATCCATAACTTTAAAG 59.604 37.037 13.76 13.76 36.58 1.85
536 537 7.242359 TGGTGGGAGAAATCCATAACTTTAAA 58.758 34.615 0.00 0.00 36.58 1.52
537 538 6.795590 TGGTGGGAGAAATCCATAACTTTAA 58.204 36.000 0.00 0.00 36.58 1.52
538 539 6.395780 TGGTGGGAGAAATCCATAACTTTA 57.604 37.500 0.00 0.00 36.58 1.85
539 540 5.269554 TGGTGGGAGAAATCCATAACTTT 57.730 39.130 0.00 0.00 36.58 2.66
540 541 4.946160 TGGTGGGAGAAATCCATAACTT 57.054 40.909 0.00 0.00 36.58 2.66
541 542 4.946160 TTGGTGGGAGAAATCCATAACT 57.054 40.909 0.00 0.00 36.58 2.24
542 543 5.993748 TTTTGGTGGGAGAAATCCATAAC 57.006 39.130 0.00 0.00 36.58 1.89
564 565 9.884636 GGCAAAATGATAATTAACCCTAACTTT 57.115 29.630 0.00 0.00 0.00 2.66
565 566 8.482943 GGGCAAAATGATAATTAACCCTAACTT 58.517 33.333 0.00 0.00 31.84 2.66
566 567 7.844269 AGGGCAAAATGATAATTAACCCTAACT 59.156 33.333 8.01 0.00 43.36 2.24
567 568 8.018537 AGGGCAAAATGATAATTAACCCTAAC 57.981 34.615 8.01 0.00 43.36 2.34
869 871 4.681978 GGTCACCGCCGTGCTCTT 62.682 66.667 0.00 0.00 40.04 2.85
994 1008 1.407851 GCTTGAGGATGACATGGAGCA 60.408 52.381 0.00 0.00 0.00 4.26
1142 1156 4.415501 CGTTCTCGCTGCACACGC 62.416 66.667 0.00 0.00 39.24 5.34
1158 1172 2.122783 TTGCCCCAATTCTTACCTCG 57.877 50.000 0.00 0.00 0.00 4.63
1160 1174 2.501316 GCAATTGCCCCAATTCTTACCT 59.499 45.455 20.06 0.00 41.40 3.08
1308 1322 0.171903 GCATGCGCAACCATTCTTCT 59.828 50.000 17.11 0.00 38.36 2.85
1385 1399 2.418471 GCTAGCTCTCTGTCAGTGCATT 60.418 50.000 7.70 0.00 43.07 3.56
1387 1401 0.529833 GCTAGCTCTCTGTCAGTGCA 59.470 55.000 7.70 0.00 43.07 4.57
1495 1509 3.901844 ACCAGTGCGATTACCATACCTAT 59.098 43.478 0.00 0.00 0.00 2.57
1676 1693 7.138692 AGTTTCTGAATTCCTCATTTCTTCG 57.861 36.000 2.27 0.00 32.14 3.79
1813 1833 3.433306 CCGAATGGGCCTAATTGGATA 57.567 47.619 4.33 0.00 38.35 2.59
1892 1913 4.209911 GCTTCCACAAAAAGTTTCAGCATC 59.790 41.667 0.00 0.00 0.00 3.91
2055 2077 5.540337 TGTTCATTTATTTTGGCACCAGGTA 59.460 36.000 0.00 0.00 0.00 3.08
2171 2195 4.636435 CCACGCGGTCCTGGGTTT 62.636 66.667 12.47 0.00 32.02 3.27
2386 2412 3.090790 TCATGTGGCAGTGCAAACATAT 58.909 40.909 26.21 13.59 35.98 1.78
2521 2553 6.502138 TCATTAATGAAAATCAGAGGGGGTT 58.498 36.000 15.82 0.00 33.08 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.