Multiple sequence alignment - TraesCS1D01G046600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G046600 chr1D 100.000 3436 0 0 1 3436 26271190 26267755 0.000000e+00 6346.0
1 TraesCS1D01G046600 chr1D 91.946 298 19 4 3143 3436 38598737 38599033 2.470000e-111 412.0
2 TraesCS1D01G046600 chr1B 94.683 2332 96 16 839 3159 41840419 41842733 0.000000e+00 3594.0
3 TraesCS1D01G046600 chr2D 98.585 636 8 1 123 758 102891583 102890949 0.000000e+00 1123.0
4 TraesCS1D01G046600 chr2D 98.473 131 2 0 1 131 102900437 102900307 7.420000e-57 231.0
5 TraesCS1D01G046600 chr2D 72.081 591 130 20 1546 2117 43288603 43289177 9.940000e-31 145.0
6 TraesCS1D01G046600 chr7D 81.455 1251 199 22 997 2233 41601840 41600609 0.000000e+00 994.0
7 TraesCS1D01G046600 chr7D 83.045 578 59 14 2379 2929 41600359 41599794 3.990000e-134 488.0
8 TraesCS1D01G046600 chr7D 95.683 278 12 0 3159 3436 160633473 160633196 6.760000e-122 448.0
9 TraesCS1D01G046600 chr7D 93.286 283 17 2 3155 3436 553496205 553495924 1.910000e-112 416.0
10 TraesCS1D01G046600 chr7A 81.405 1253 199 23 997 2233 41048768 41047534 0.000000e+00 992.0
11 TraesCS1D01G046600 chr7A 82.960 581 61 14 2379 2935 41047327 41046761 1.110000e-134 490.0
12 TraesCS1D01G046600 chr1A 95.586 589 20 2 2245 2830 27329487 27330072 0.000000e+00 939.0
13 TraesCS1D01G046600 chr1A 96.979 331 10 0 2829 3159 27330310 27330640 1.080000e-154 556.0
14 TraesCS1D01G046600 chr4A 83.275 574 60 16 2379 2929 661279290 661278730 2.380000e-136 496.0
15 TraesCS1D01G046600 chr4A 82.867 572 64 14 2379 2929 648793853 648793295 1.850000e-132 483.0
16 TraesCS1D01G046600 chr4A 94.872 273 14 0 3159 3431 580659701 580659973 8.810000e-116 427.0
17 TraesCS1D01G046600 chr4A 78.080 625 92 27 1741 2342 80405 79803 1.520000e-93 353.0
18 TraesCS1D01G046600 chr4A 89.535 86 9 0 2148 2233 79883 79798 3.630000e-20 110.0
19 TraesCS1D01G046600 chr6D 98.182 275 5 0 3157 3431 136700885 136701159 6.670000e-132 481.0
20 TraesCS1D01G046600 chr6D 81.593 565 77 10 1781 2338 2046849 2046305 3.150000e-120 442.0
21 TraesCS1D01G046600 chr6D 78.740 381 34 29 2351 2722 472763566 472763224 9.660000e-51 211.0
22 TraesCS1D01G046600 chr6D 85.246 183 24 2 2163 2342 472764271 472764089 5.860000e-43 185.0
23 TraesCS1D01G046600 chr5D 97.842 278 6 0 3159 3436 307361382 307361659 6.670000e-132 481.0
24 TraesCS1D01G046600 chr4D 97.122 278 8 0 3159 3436 179849536 179849813 1.440000e-128 470.0
25 TraesCS1D01G046600 chr2A 95.238 273 13 0 3159 3431 694455902 694456174 1.890000e-117 433.0
26 TraesCS1D01G046600 chr3A 94.604 278 15 0 3159 3436 8582857 8582580 6.810000e-117 431.0
27 TraesCS1D01G046600 chr3A 80.543 442 55 16 2351 2778 157039986 157039562 9.260000e-81 311.0
28 TraesCS1D01G046600 chr6A 77.063 715 120 27 1405 2113 617039882 617040558 4.190000e-99 372.0
29 TraesCS1D01G046600 chr6A 82.305 243 25 12 2489 2724 794267 794036 9.730000e-46 195.0
30 TraesCS1D01G046600 chr6B 78.815 557 101 12 1405 1951 717906078 717905529 3.260000e-95 359.0
31 TraesCS1D01G046600 chr6B 80.114 352 41 14 2605 2948 4485736 4485406 5.730000e-58 235.0
32 TraesCS1D01G046600 chr6B 74.710 518 122 8 31 543 708972369 708972882 4.460000e-54 222.0
33 TraesCS1D01G046600 chr6B 90.667 75 7 0 2158 2232 4486600 4486526 2.180000e-17 100.0
34 TraesCS1D01G046600 chr4B 78.240 625 91 27 1741 2342 121722 121120 3.260000e-95 359.0
35 TraesCS1D01G046600 chr4B 89.535 86 9 0 2148 2233 121200 121115 3.630000e-20 110.0
36 TraesCS1D01G046600 chr3D 78.704 540 75 20 2351 2872 138901747 138901230 1.190000e-84 324.0
37 TraesCS1D01G046600 chr3D 78.541 466 70 20 2642 3081 568020939 568021400 2.610000e-71 279.0
38 TraesCS1D01G046600 chr3D 81.703 317 44 6 991 1297 569132392 569132704 5.690000e-63 252.0
39 TraesCS1D01G046600 chr3D 81.308 321 48 9 991 1302 579582808 579582491 2.050000e-62 250.0
40 TraesCS1D01G046600 chr3D 84.553 246 38 0 1029 1274 520595049 520595294 9.530000e-61 244.0
41 TraesCS1D01G046600 chr3D 80.938 320 49 10 990 1297 565641908 565642227 3.430000e-60 243.0
42 TraesCS1D01G046600 chr3D 73.301 618 119 31 1555 2140 567690573 567689970 5.860000e-43 185.0
43 TraesCS1D01G046600 chr3D 71.853 707 151 29 1546 2234 58089272 58088596 3.550000e-35 159.0
44 TraesCS1D01G046600 chr3D 74.803 254 53 10 97 342 24760203 24759953 1.690000e-18 104.0
45 TraesCS1D01G046600 chr3D 80.597 134 22 2 1996 2125 569127194 569127061 2.180000e-17 100.0
46 TraesCS1D01G046600 chr3D 95.455 44 2 0 1347 1390 561007311 561007268 1.710000e-08 71.3
47 TraesCS1D01G046600 chrUn 83.618 293 39 7 999 1285 41059828 41059539 2.030000e-67 267.0
48 TraesCS1D01G046600 chrUn 77.061 279 50 5 1969 2233 314515325 314515047 7.680000e-32 148.0
49 TraesCS1D01G046600 chrUn 74.786 234 41 13 2653 2879 217829439 217829661 4.720000e-14 89.8
50 TraesCS1D01G046600 chrUn 74.786 234 41 13 2653 2879 227093707 227093929 4.720000e-14 89.8
51 TraesCS1D01G046600 chrUn 75.879 199 34 10 2686 2879 336705397 336705208 4.720000e-14 89.8
52 TraesCS1D01G046600 chr3B 80.333 300 48 10 991 1280 685630646 685630944 2.080000e-52 217.0
53 TraesCS1D01G046600 chr3B 80.333 300 48 10 991 1280 685659141 685659439 2.080000e-52 217.0
54 TraesCS1D01G046600 chr3B 93.182 44 3 0 1348 1391 754948537 754948580 7.960000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G046600 chr1D 26267755 26271190 3435 True 6346.0 6346 100.0000 1 3436 1 chr1D.!!$R1 3435
1 TraesCS1D01G046600 chr1B 41840419 41842733 2314 False 3594.0 3594 94.6830 839 3159 1 chr1B.!!$F1 2320
2 TraesCS1D01G046600 chr2D 102890949 102891583 634 True 1123.0 1123 98.5850 123 758 1 chr2D.!!$R1 635
3 TraesCS1D01G046600 chr7D 41599794 41601840 2046 True 741.0 994 82.2500 997 2929 2 chr7D.!!$R3 1932
4 TraesCS1D01G046600 chr7A 41046761 41048768 2007 True 741.0 992 82.1825 997 2935 2 chr7A.!!$R1 1938
5 TraesCS1D01G046600 chr1A 27329487 27330640 1153 False 747.5 939 96.2825 2245 3159 2 chr1A.!!$F1 914
6 TraesCS1D01G046600 chr4A 661278730 661279290 560 True 496.0 496 83.2750 2379 2929 1 chr4A.!!$R2 550
7 TraesCS1D01G046600 chr4A 648793295 648793853 558 True 483.0 483 82.8670 2379 2929 1 chr4A.!!$R1 550
8 TraesCS1D01G046600 chr4A 79798 80405 607 True 231.5 353 83.8075 1741 2342 2 chr4A.!!$R3 601
9 TraesCS1D01G046600 chr6D 2046305 2046849 544 True 442.0 442 81.5930 1781 2338 1 chr6D.!!$R1 557
10 TraesCS1D01G046600 chr6A 617039882 617040558 676 False 372.0 372 77.0630 1405 2113 1 chr6A.!!$F1 708
11 TraesCS1D01G046600 chr6B 717905529 717906078 549 True 359.0 359 78.8150 1405 1951 1 chr6B.!!$R1 546
12 TraesCS1D01G046600 chr6B 708972369 708972882 513 False 222.0 222 74.7100 31 543 1 chr6B.!!$F1 512
13 TraesCS1D01G046600 chr4B 121115 121722 607 True 234.5 359 83.8875 1741 2342 2 chr4B.!!$R1 601
14 TraesCS1D01G046600 chr3D 138901230 138901747 517 True 324.0 324 78.7040 2351 2872 1 chr3D.!!$R3 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 891 0.037326 CGAGAGCAGCCCAAGTTACA 60.037 55.0 0.0 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2840 3399 0.247736 AACGGAGACATGAGGCAGAC 59.752 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.186856 TCGTGTGAATACAGCATCAAGA 57.813 40.909 0.00 0.00 37.52 3.02
22 23 4.565022 TCGTGTGAATACAGCATCAAGAA 58.435 39.130 0.00 0.00 37.52 2.52
23 24 4.994217 TCGTGTGAATACAGCATCAAGAAA 59.006 37.500 0.00 0.00 37.52 2.52
24 25 5.120674 TCGTGTGAATACAGCATCAAGAAAG 59.879 40.000 0.00 0.00 37.52 2.62
25 26 5.106948 CGTGTGAATACAGCATCAAGAAAGT 60.107 40.000 0.00 0.00 37.52 2.66
26 27 6.566564 CGTGTGAATACAGCATCAAGAAAGTT 60.567 38.462 0.00 0.00 37.52 2.66
27 28 7.141363 GTGTGAATACAGCATCAAGAAAGTTT 58.859 34.615 0.00 0.00 37.52 2.66
28 29 7.113965 GTGTGAATACAGCATCAAGAAAGTTTG 59.886 37.037 0.00 0.00 37.52 2.93
29 30 6.088616 GTGAATACAGCATCAAGAAAGTTTGC 59.911 38.462 0.00 0.00 0.00 3.68
30 31 3.375782 ACAGCATCAAGAAAGTTTGCC 57.624 42.857 0.00 0.00 33.85 4.52
31 32 2.694628 ACAGCATCAAGAAAGTTTGCCA 59.305 40.909 0.00 0.00 33.85 4.92
32 33 3.322828 ACAGCATCAAGAAAGTTTGCCAT 59.677 39.130 0.00 0.00 33.85 4.40
33 34 4.202284 ACAGCATCAAGAAAGTTTGCCATT 60.202 37.500 0.00 0.00 33.85 3.16
34 35 4.753107 CAGCATCAAGAAAGTTTGCCATTT 59.247 37.500 0.00 0.00 33.85 2.32
35 36 4.992951 AGCATCAAGAAAGTTTGCCATTTC 59.007 37.500 0.00 0.00 35.99 2.17
36 37 4.751098 GCATCAAGAAAGTTTGCCATTTCA 59.249 37.500 0.00 0.00 37.78 2.69
37 38 5.107220 GCATCAAGAAAGTTTGCCATTTCAG 60.107 40.000 0.00 0.00 37.78 3.02
38 39 4.370917 TCAAGAAAGTTTGCCATTTCAGC 58.629 39.130 0.00 0.00 37.78 4.26
39 40 4.099881 TCAAGAAAGTTTGCCATTTCAGCT 59.900 37.500 0.00 0.00 37.78 4.24
42 43 3.375782 AAGTTTGCCATTTCAGCTGTC 57.624 42.857 14.67 0.00 0.00 3.51
45 46 1.689984 TTGCCATTTCAGCTGTCACA 58.310 45.000 14.67 2.23 0.00 3.58
48 49 1.229428 CCATTTCAGCTGTCACACGT 58.771 50.000 14.67 0.00 0.00 4.49
54 55 3.349006 GCTGTCACACGTGGCTGG 61.349 66.667 21.57 6.48 35.92 4.85
57 58 2.665185 GTCACACGTGGCTGGACC 60.665 66.667 21.57 3.69 39.84 4.46
60 61 1.961277 CACACGTGGCTGGACCTTC 60.961 63.158 21.57 0.00 40.22 3.46
61 62 2.738521 CACGTGGCTGGACCTTCG 60.739 66.667 7.95 0.00 40.22 3.79
66 67 2.892425 GGCTGGACCTTCGCGATG 60.892 66.667 10.88 13.11 34.51 3.84
68 69 1.880340 GCTGGACCTTCGCGATGAG 60.880 63.158 22.25 12.05 0.00 2.90
115 116 5.208121 AGGTGGTGAAAAGATCCTGAAAAA 58.792 37.500 0.00 0.00 0.00 1.94
528 531 1.134189 TGCTCCCATGCTTCTCTGATG 60.134 52.381 0.00 0.00 0.00 3.07
559 562 2.661176 TCCCTCCTCCTGTAACCAAT 57.339 50.000 0.00 0.00 0.00 3.16
580 583 1.824852 GGGCTTCAAAACGGAATCCAT 59.175 47.619 0.00 0.00 35.30 3.41
581 584 2.233676 GGGCTTCAAAACGGAATCCATT 59.766 45.455 0.00 0.00 35.30 3.16
616 619 2.366301 TCCTATCCGCCCCTTGCA 60.366 61.111 0.00 0.00 41.33 4.08
691 694 6.842676 ACTGTAAAATCTGGGAACTTCTCTT 58.157 36.000 0.00 0.00 0.00 2.85
758 761 1.405256 CGAGCTCAGATCCTTGCTGTT 60.405 52.381 15.40 0.00 35.76 3.16
759 762 2.278854 GAGCTCAGATCCTTGCTGTTC 58.721 52.381 9.40 0.00 35.76 3.18
760 763 1.065564 AGCTCAGATCCTTGCTGTTCC 60.066 52.381 3.59 0.00 34.19 3.62
761 764 1.339438 GCTCAGATCCTTGCTGTTCCA 60.339 52.381 0.00 0.00 34.98 3.53
762 765 2.683152 GCTCAGATCCTTGCTGTTCCAT 60.683 50.000 0.00 0.00 34.98 3.41
763 766 3.204526 CTCAGATCCTTGCTGTTCCATC 58.795 50.000 0.00 0.00 34.98 3.51
764 767 2.092753 TCAGATCCTTGCTGTTCCATCC 60.093 50.000 0.00 0.00 34.98 3.51
765 768 1.918262 AGATCCTTGCTGTTCCATCCA 59.082 47.619 0.00 0.00 0.00 3.41
766 769 2.019984 GATCCTTGCTGTTCCATCCAC 58.980 52.381 0.00 0.00 0.00 4.02
767 770 0.038166 TCCTTGCTGTTCCATCCACC 59.962 55.000 0.00 0.00 0.00 4.61
768 771 0.251297 CCTTGCTGTTCCATCCACCA 60.251 55.000 0.00 0.00 0.00 4.17
769 772 1.619654 CTTGCTGTTCCATCCACCAA 58.380 50.000 0.00 0.00 0.00 3.67
770 773 1.962807 CTTGCTGTTCCATCCACCAAA 59.037 47.619 0.00 0.00 0.00 3.28
771 774 1.327303 TGCTGTTCCATCCACCAAAC 58.673 50.000 0.00 0.00 0.00 2.93
772 775 1.327303 GCTGTTCCATCCACCAAACA 58.673 50.000 0.00 0.00 0.00 2.83
773 776 1.686052 GCTGTTCCATCCACCAAACAA 59.314 47.619 0.00 0.00 31.75 2.83
774 777 2.299867 GCTGTTCCATCCACCAAACAAT 59.700 45.455 0.00 0.00 31.75 2.71
775 778 3.244181 GCTGTTCCATCCACCAAACAATT 60.244 43.478 0.00 0.00 31.75 2.32
776 779 4.021544 GCTGTTCCATCCACCAAACAATTA 60.022 41.667 0.00 0.00 31.75 1.40
777 780 5.461032 TGTTCCATCCACCAAACAATTAC 57.539 39.130 0.00 0.00 0.00 1.89
778 781 4.895889 TGTTCCATCCACCAAACAATTACA 59.104 37.500 0.00 0.00 0.00 2.41
779 782 5.363868 TGTTCCATCCACCAAACAATTACAA 59.636 36.000 0.00 0.00 0.00 2.41
780 783 6.127054 TGTTCCATCCACCAAACAATTACAAA 60.127 34.615 0.00 0.00 0.00 2.83
781 784 6.095432 TCCATCCACCAAACAATTACAAAG 57.905 37.500 0.00 0.00 0.00 2.77
782 785 5.600484 TCCATCCACCAAACAATTACAAAGT 59.400 36.000 0.00 0.00 0.00 2.66
783 786 5.695816 CCATCCACCAAACAATTACAAAGTG 59.304 40.000 0.00 0.00 0.00 3.16
784 787 5.923733 TCCACCAAACAATTACAAAGTGT 57.076 34.783 0.00 0.00 42.14 3.55
785 788 7.429633 CATCCACCAAACAATTACAAAGTGTA 58.570 34.615 0.00 0.00 38.99 2.90
786 789 7.589958 TCCACCAAACAATTACAAAGTGTAT 57.410 32.000 0.00 0.00 38.99 2.29
787 790 7.653647 TCCACCAAACAATTACAAAGTGTATC 58.346 34.615 0.00 0.00 38.99 2.24
788 791 6.866248 CCACCAAACAATTACAAAGTGTATCC 59.134 38.462 0.00 0.00 38.99 2.59
789 792 7.255801 CCACCAAACAATTACAAAGTGTATCCT 60.256 37.037 0.00 0.00 38.99 3.24
790 793 8.788806 CACCAAACAATTACAAAGTGTATCCTA 58.211 33.333 0.00 0.00 38.99 2.94
791 794 8.789762 ACCAAACAATTACAAAGTGTATCCTAC 58.210 33.333 0.00 0.00 38.99 3.18
792 795 8.788806 CCAAACAATTACAAAGTGTATCCTACA 58.211 33.333 0.00 0.00 38.99 2.74
804 807 4.901868 TGTATCCTACACAAGACCAAACC 58.098 43.478 0.00 0.00 32.89 3.27
805 808 4.348461 TGTATCCTACACAAGACCAAACCA 59.652 41.667 0.00 0.00 32.89 3.67
806 809 3.202829 TCCTACACAAGACCAAACCAC 57.797 47.619 0.00 0.00 0.00 4.16
807 810 2.506231 TCCTACACAAGACCAAACCACA 59.494 45.455 0.00 0.00 0.00 4.17
808 811 3.137544 TCCTACACAAGACCAAACCACAT 59.862 43.478 0.00 0.00 0.00 3.21
809 812 3.888930 CCTACACAAGACCAAACCACATT 59.111 43.478 0.00 0.00 0.00 2.71
810 813 4.340950 CCTACACAAGACCAAACCACATTT 59.659 41.667 0.00 0.00 0.00 2.32
811 814 5.533154 CCTACACAAGACCAAACCACATTTA 59.467 40.000 0.00 0.00 0.00 1.40
812 815 6.208599 CCTACACAAGACCAAACCACATTTAT 59.791 38.462 0.00 0.00 0.00 1.40
813 816 6.478512 ACACAAGACCAAACCACATTTATT 57.521 33.333 0.00 0.00 0.00 1.40
814 817 6.512297 ACACAAGACCAAACCACATTTATTC 58.488 36.000 0.00 0.00 0.00 1.75
815 818 6.097554 ACACAAGACCAAACCACATTTATTCA 59.902 34.615 0.00 0.00 0.00 2.57
816 819 7.153985 CACAAGACCAAACCACATTTATTCAT 58.846 34.615 0.00 0.00 0.00 2.57
817 820 7.656948 CACAAGACCAAACCACATTTATTCATT 59.343 33.333 0.00 0.00 0.00 2.57
818 821 7.872483 ACAAGACCAAACCACATTTATTCATTC 59.128 33.333 0.00 0.00 0.00 2.67
819 822 6.935167 AGACCAAACCACATTTATTCATTCC 58.065 36.000 0.00 0.00 0.00 3.01
820 823 6.496565 AGACCAAACCACATTTATTCATTCCA 59.503 34.615 0.00 0.00 0.00 3.53
821 824 6.700352 ACCAAACCACATTTATTCATTCCAG 58.300 36.000 0.00 0.00 0.00 3.86
822 825 6.108015 CCAAACCACATTTATTCATTCCAGG 58.892 40.000 0.00 0.00 0.00 4.45
823 826 6.070881 CCAAACCACATTTATTCATTCCAGGA 60.071 38.462 0.00 0.00 0.00 3.86
824 827 7.364939 CCAAACCACATTTATTCATTCCAGGAT 60.365 37.037 0.00 0.00 0.00 3.24
825 828 8.694540 CAAACCACATTTATTCATTCCAGGATA 58.305 33.333 0.00 0.00 0.00 2.59
826 829 8.837099 AACCACATTTATTCATTCCAGGATAA 57.163 30.769 0.00 0.00 0.00 1.75
827 830 8.837099 ACCACATTTATTCATTCCAGGATAAA 57.163 30.769 0.00 0.00 0.00 1.40
828 831 9.265862 ACCACATTTATTCATTCCAGGATAAAA 57.734 29.630 0.00 0.00 0.00 1.52
829 832 9.754382 CCACATTTATTCATTCCAGGATAAAAG 57.246 33.333 0.00 0.00 0.00 2.27
834 837 9.632638 TTTATTCATTCCAGGATAAAAGAGAGG 57.367 33.333 0.00 0.00 0.00 3.69
835 838 5.041191 TCATTCCAGGATAAAAGAGAGGC 57.959 43.478 0.00 0.00 0.00 4.70
836 839 4.723789 TCATTCCAGGATAAAAGAGAGGCT 59.276 41.667 0.00 0.00 0.00 4.58
837 840 4.762289 TTCCAGGATAAAAGAGAGGCTC 57.238 45.455 6.34 6.34 0.00 4.70
838 841 3.041946 TCCAGGATAAAAGAGAGGCTCC 58.958 50.000 11.71 2.69 0.00 4.70
839 842 2.774234 CCAGGATAAAAGAGAGGCTCCA 59.226 50.000 11.71 0.00 0.00 3.86
840 843 3.200825 CCAGGATAAAAGAGAGGCTCCAA 59.799 47.826 11.71 0.00 0.00 3.53
841 844 4.324563 CCAGGATAAAAGAGAGGCTCCAAA 60.325 45.833 11.71 0.00 0.00 3.28
842 845 4.637977 CAGGATAAAAGAGAGGCTCCAAAC 59.362 45.833 11.71 0.68 0.00 2.93
843 846 4.289672 AGGATAAAAGAGAGGCTCCAAACA 59.710 41.667 11.71 0.00 0.00 2.83
884 887 1.004440 GTTCGAGAGCAGCCCAAGT 60.004 57.895 0.00 0.00 0.00 3.16
888 891 0.037326 CGAGAGCAGCCCAAGTTACA 60.037 55.000 0.00 0.00 0.00 2.41
901 904 3.432252 CCAAGTTACACATCCGTGAGAAC 59.568 47.826 0.00 3.82 46.80 3.01
904 907 2.993899 GTTACACATCCGTGAGAACTGG 59.006 50.000 0.00 0.00 46.80 4.00
908 911 0.608130 CATCCGTGAGAACTGGGACA 59.392 55.000 0.00 0.00 0.00 4.02
920 923 2.418669 ACTGGGACAAGAGGAAGGAAA 58.581 47.619 0.00 0.00 38.70 3.13
921 924 2.373502 ACTGGGACAAGAGGAAGGAAAG 59.626 50.000 0.00 0.00 38.70 2.62
923 926 2.372172 TGGGACAAGAGGAAGGAAAGAC 59.628 50.000 0.00 0.00 31.92 3.01
924 927 2.290387 GGGACAAGAGGAAGGAAAGACC 60.290 54.545 0.00 0.00 39.35 3.85
934 937 1.521141 GGAAAGACCTACCTCCGCC 59.479 63.158 0.00 0.00 35.41 6.13
935 938 1.141234 GAAAGACCTACCTCCGCCG 59.859 63.158 0.00 0.00 0.00 6.46
936 939 2.902759 GAAAGACCTACCTCCGCCGC 62.903 65.000 0.00 0.00 0.00 6.53
969 972 1.335882 GCTACCCCTCTACCACCACC 61.336 65.000 0.00 0.00 0.00 4.61
1054 1061 3.967335 GCCTCCCGGACGAGATCG 61.967 72.222 0.73 0.00 46.33 3.69
1299 1306 4.717629 TTCCAGTGCGTCGCGAGG 62.718 66.667 23.63 23.63 0.00 4.63
1334 1341 1.992170 GTCCTAACGAGTTCATGCGT 58.008 50.000 0.00 0.00 43.39 5.24
1335 1342 1.918609 GTCCTAACGAGTTCATGCGTC 59.081 52.381 0.00 0.00 40.23 5.19
1336 1343 1.135199 TCCTAACGAGTTCATGCGTCC 60.135 52.381 0.00 0.00 40.23 4.79
1344 1360 2.942796 TTCATGCGTCCGTGCTCCT 61.943 57.895 0.00 0.00 35.36 3.69
1356 1372 1.334599 CGTGCTCCTCGCTTCTATCTC 60.335 57.143 0.00 0.00 40.11 2.75
1395 1411 0.679960 TCCTCGTGCTCTCCATCGAA 60.680 55.000 0.00 0.00 30.61 3.71
1437 1453 1.445582 CCCGGCAACTCGACAGTAC 60.446 63.158 0.00 0.00 30.14 2.73
1440 1456 1.372499 GGCAACTCGACAGTACGCA 60.372 57.895 0.00 0.00 34.29 5.24
1441 1457 1.344942 GGCAACTCGACAGTACGCAG 61.345 60.000 0.00 0.00 34.29 5.18
1485 1501 2.666812 CCCGTGGAGTTGTACCCC 59.333 66.667 0.00 0.00 0.00 4.95
1549 1574 3.519107 TGAAGATCAAGGTGCCATCTACA 59.481 43.478 0.00 0.00 0.00 2.74
1566 1595 6.344500 CATCTACATTTTCACAGTAGGCTCT 58.656 40.000 0.00 0.00 36.69 4.09
2033 2086 1.284785 CCAACCCAGAGGCCTCAATTA 59.715 52.381 33.90 0.00 36.11 1.40
2041 2094 5.046950 CCCAGAGGCCTCAATTATACTCTAC 60.047 48.000 33.90 2.59 33.87 2.59
2128 2184 2.939640 GCCTCGCCTTTTATCTGACCAA 60.940 50.000 0.00 0.00 0.00 3.67
2231 2293 7.816513 TGAGCTGCAATATGTATGAACTAGATC 59.183 37.037 1.02 0.00 0.00 2.75
2233 2295 7.038445 AGCTGCAATATGTATGAACTAGATCCT 60.038 37.037 1.02 0.00 0.00 3.24
2461 2751 9.316730 GTTGCATCATTTGGTATTGTATCAATT 57.683 29.630 0.37 0.00 0.00 2.32
2538 2841 4.739046 AGCTCGAGAAATGAAACTTGTG 57.261 40.909 18.75 0.00 0.00 3.33
2543 2846 4.212004 TCGAGAAATGAAACTTGTGCTGAG 59.788 41.667 0.00 0.00 0.00 3.35
2840 3399 2.673833 GGTCGAAATAGTGCCTATCGG 58.326 52.381 0.00 0.00 0.00 4.18
3008 3575 3.316308 AGCGGATGATTAAATGTGGAAGC 59.684 43.478 0.00 0.00 0.00 3.86
3159 3726 8.812513 TTCATTCATTCTTTATGTGTCCATCT 57.187 30.769 0.00 0.00 35.64 2.90
3160 3727 8.442632 TCATTCATTCTTTATGTGTCCATCTC 57.557 34.615 0.00 0.00 35.64 2.75
3161 3728 6.908870 TTCATTCTTTATGTGTCCATCTCG 57.091 37.500 0.00 0.00 35.64 4.04
3162 3729 6.220726 TCATTCTTTATGTGTCCATCTCGA 57.779 37.500 0.00 0.00 35.64 4.04
3163 3730 6.639563 TCATTCTTTATGTGTCCATCTCGAA 58.360 36.000 0.00 0.00 35.64 3.71
3164 3731 7.275183 TCATTCTTTATGTGTCCATCTCGAAT 58.725 34.615 0.00 0.00 35.64 3.34
3165 3732 6.908870 TTCTTTATGTGTCCATCTCGAATG 57.091 37.500 0.00 0.00 32.29 2.67
3166 3733 4.811024 TCTTTATGTGTCCATCTCGAATGC 59.189 41.667 0.00 0.00 32.29 3.56
3167 3734 2.696989 ATGTGTCCATCTCGAATGCA 57.303 45.000 0.00 0.00 0.00 3.96
3168 3735 1.725641 TGTGTCCATCTCGAATGCAC 58.274 50.000 0.00 0.02 0.00 4.57
3169 3736 1.009829 GTGTCCATCTCGAATGCACC 58.990 55.000 0.00 0.00 0.00 5.01
3170 3737 0.460109 TGTCCATCTCGAATGCACCG 60.460 55.000 4.14 4.14 0.00 4.94
3171 3738 0.179111 GTCCATCTCGAATGCACCGA 60.179 55.000 11.76 11.76 34.61 4.69
3172 3739 0.752658 TCCATCTCGAATGCACCGAT 59.247 50.000 12.56 0.00 35.35 4.18
3173 3740 1.960689 TCCATCTCGAATGCACCGATA 59.039 47.619 12.56 7.09 35.35 2.92
3174 3741 2.061773 CCATCTCGAATGCACCGATAC 58.938 52.381 12.56 0.00 35.35 2.24
3175 3742 2.288457 CCATCTCGAATGCACCGATACT 60.288 50.000 12.56 0.14 35.35 2.12
3176 3743 3.384668 CATCTCGAATGCACCGATACTT 58.615 45.455 12.56 0.00 35.35 2.24
3177 3744 3.079960 TCTCGAATGCACCGATACTTC 57.920 47.619 12.56 0.00 35.35 3.01
3178 3745 2.425668 TCTCGAATGCACCGATACTTCA 59.574 45.455 12.56 0.00 35.35 3.02
3179 3746 2.791560 CTCGAATGCACCGATACTTCAG 59.208 50.000 12.56 0.00 35.35 3.02
3180 3747 1.860950 CGAATGCACCGATACTTCAGG 59.139 52.381 4.49 0.00 0.00 3.86
3181 3748 1.599542 GAATGCACCGATACTTCAGGC 59.400 52.381 0.00 0.00 0.00 4.85
3182 3749 0.541392 ATGCACCGATACTTCAGGCA 59.459 50.000 0.00 0.00 0.00 4.75
3183 3750 0.323302 TGCACCGATACTTCAGGCAA 59.677 50.000 0.00 0.00 0.00 4.52
3184 3751 0.727398 GCACCGATACTTCAGGCAAC 59.273 55.000 0.00 0.00 0.00 4.17
3200 3767 1.714460 GCAACTAGCGAATCGGTATCG 59.286 52.381 15.05 7.24 39.07 2.92
3201 3768 2.316792 CAACTAGCGAATCGGTATCGG 58.683 52.381 15.05 6.54 39.07 4.18
3202 3769 1.888215 ACTAGCGAATCGGTATCGGA 58.112 50.000 15.05 0.00 39.07 4.55
3203 3770 2.434428 ACTAGCGAATCGGTATCGGAT 58.566 47.619 15.05 0.00 39.07 4.18
3204 3771 3.603532 ACTAGCGAATCGGTATCGGATA 58.396 45.455 15.05 0.00 39.07 2.59
3205 3772 2.915738 AGCGAATCGGTATCGGATAC 57.084 50.000 17.85 17.85 40.54 2.24
3220 3787 2.632377 GGATACCGTATCCGATACCGA 58.368 52.381 19.62 0.00 44.75 4.69
3221 3788 3.209410 GGATACCGTATCCGATACCGAT 58.791 50.000 19.62 4.17 44.75 4.18
3222 3789 4.380531 GGATACCGTATCCGATACCGATA 58.619 47.826 19.62 3.96 44.75 2.92
3223 3790 4.212214 GGATACCGTATCCGATACCGATAC 59.788 50.000 19.62 1.90 44.75 2.24
3224 3791 3.340814 ACCGTATCCGATACCGATACT 57.659 47.619 12.09 0.00 38.22 2.12
3225 3792 3.265791 ACCGTATCCGATACCGATACTC 58.734 50.000 12.09 0.00 38.22 2.59
3226 3793 2.611292 CCGTATCCGATACCGATACTCC 59.389 54.545 12.09 0.00 38.22 3.85
3227 3794 2.283617 CGTATCCGATACCGATACTCCG 59.716 54.545 12.09 0.00 38.22 4.63
3228 3795 1.093159 ATCCGATACCGATACTCCGC 58.907 55.000 0.00 0.00 38.22 5.54
3229 3796 0.035881 TCCGATACCGATACTCCGCT 59.964 55.000 0.00 0.00 38.22 5.52
3230 3797 0.447011 CCGATACCGATACTCCGCTC 59.553 60.000 0.00 0.00 38.22 5.03
3231 3798 1.154197 CGATACCGATACTCCGCTCA 58.846 55.000 0.00 0.00 38.22 4.26
3232 3799 1.738350 CGATACCGATACTCCGCTCAT 59.262 52.381 0.00 0.00 38.22 2.90
3233 3800 2.934553 CGATACCGATACTCCGCTCATA 59.065 50.000 0.00 0.00 38.22 2.15
3234 3801 3.242349 CGATACCGATACTCCGCTCATAC 60.242 52.174 0.00 0.00 38.22 2.39
3235 3802 0.873054 ACCGATACTCCGCTCATACG 59.127 55.000 0.00 0.00 0.00 3.06
3236 3803 0.454620 CCGATACTCCGCTCATACGC 60.455 60.000 0.00 0.00 0.00 4.42
3237 3804 0.454620 CGATACTCCGCTCATACGCC 60.455 60.000 0.00 0.00 0.00 5.68
3238 3805 0.109226 GATACTCCGCTCATACGCCC 60.109 60.000 0.00 0.00 0.00 6.13
3239 3806 1.533469 ATACTCCGCTCATACGCCCC 61.533 60.000 0.00 0.00 0.00 5.80
3240 3807 2.635787 TACTCCGCTCATACGCCCCT 62.636 60.000 0.00 0.00 0.00 4.79
3241 3808 3.506059 CTCCGCTCATACGCCCCTG 62.506 68.421 0.00 0.00 0.00 4.45
3242 3809 3.536917 CCGCTCATACGCCCCTGA 61.537 66.667 0.00 0.00 0.00 3.86
3243 3810 2.737180 CGCTCATACGCCCCTGAT 59.263 61.111 0.00 0.00 0.00 2.90
3244 3811 1.532604 CCGCTCATACGCCCCTGATA 61.533 60.000 0.00 0.00 0.00 2.15
3245 3812 0.388649 CGCTCATACGCCCCTGATAC 60.389 60.000 0.00 0.00 0.00 2.24
3246 3813 0.388649 GCTCATACGCCCCTGATACG 60.389 60.000 0.00 0.00 0.00 3.06
3247 3814 0.959553 CTCATACGCCCCTGATACGT 59.040 55.000 0.00 0.00 43.45 3.57
3248 3815 2.156917 CTCATACGCCCCTGATACGTA 58.843 52.381 0.00 0.00 45.26 3.57
3250 3817 2.751259 TCATACGCCCCTGATACGTATC 59.249 50.000 25.48 25.48 46.81 2.24
3251 3818 1.538047 TACGCCCCTGATACGTATCC 58.462 55.000 28.17 14.12 40.99 2.59
3252 3819 0.468585 ACGCCCCTGATACGTATCCA 60.469 55.000 28.17 17.01 38.45 3.41
3253 3820 0.677288 CGCCCCTGATACGTATCCAA 59.323 55.000 28.17 13.11 31.71 3.53
3254 3821 1.336887 CGCCCCTGATACGTATCCAAG 60.337 57.143 28.17 20.42 31.71 3.61
3255 3822 1.002087 GCCCCTGATACGTATCCAAGG 59.998 57.143 28.17 26.42 31.71 3.61
3256 3823 2.605257 CCCCTGATACGTATCCAAGGA 58.395 52.381 30.07 14.97 31.08 3.36
3257 3824 2.563179 CCCCTGATACGTATCCAAGGAG 59.437 54.545 30.07 20.20 31.08 3.69
3258 3825 3.231818 CCCTGATACGTATCCAAGGAGT 58.768 50.000 30.07 1.87 31.08 3.85
3259 3826 4.404640 CCCTGATACGTATCCAAGGAGTA 58.595 47.826 30.07 13.24 31.08 2.59
3260 3827 5.017490 CCCTGATACGTATCCAAGGAGTAT 58.983 45.833 30.07 1.65 31.08 2.12
3261 3828 5.125739 CCCTGATACGTATCCAAGGAGTATC 59.874 48.000 30.07 15.06 42.16 2.24
3262 3829 5.125739 CCTGATACGTATCCAAGGAGTATCC 59.874 48.000 26.72 5.81 43.37 2.59
3263 3830 5.637127 TGATACGTATCCAAGGAGTATCCA 58.363 41.667 28.17 6.85 44.59 3.41
3264 3831 6.253758 TGATACGTATCCAAGGAGTATCCAT 58.746 40.000 28.17 0.00 44.59 3.41
3296 3863 9.840427 AACGATTTAAAACAATTCAGATACCTG 57.160 29.630 0.00 0.00 41.74 4.00
3297 3864 9.226606 ACGATTTAAAACAATTCAGATACCTGA 57.773 29.630 0.00 0.00 46.95 3.86
3322 3889 6.986424 GGATACTTTTTCAGTTCGTTTTGG 57.014 37.500 0.00 0.00 36.88 3.28
3323 3890 6.731164 GGATACTTTTTCAGTTCGTTTTGGA 58.269 36.000 0.00 0.00 36.88 3.53
3324 3891 7.368059 GGATACTTTTTCAGTTCGTTTTGGAT 58.632 34.615 0.00 0.00 36.88 3.41
3325 3892 8.508875 GGATACTTTTTCAGTTCGTTTTGGATA 58.491 33.333 0.00 0.00 36.88 2.59
3326 3893 9.326339 GATACTTTTTCAGTTCGTTTTGGATAC 57.674 33.333 0.00 0.00 36.88 2.24
3327 3894 6.196571 ACTTTTTCAGTTCGTTTTGGATACG 58.803 36.000 0.00 0.00 40.23 3.06
3328 3895 4.735662 TTTCAGTTCGTTTTGGATACGG 57.264 40.909 0.00 0.00 39.38 4.02
3329 3896 2.070783 TCAGTTCGTTTTGGATACGGC 58.929 47.619 0.00 0.00 39.38 5.68
3330 3897 1.129811 CAGTTCGTTTTGGATACGGCC 59.870 52.381 0.00 0.00 39.38 6.13
3331 3898 0.448990 GTTCGTTTTGGATACGGCCC 59.551 55.000 0.00 0.00 39.38 5.80
3332 3899 0.036448 TTCGTTTTGGATACGGCCCA 59.964 50.000 0.00 0.00 39.38 5.36
3333 3900 0.391927 TCGTTTTGGATACGGCCCAG 60.392 55.000 0.00 0.00 39.38 4.45
3334 3901 1.807226 GTTTTGGATACGGCCCAGC 59.193 57.895 0.00 0.00 42.51 4.85
3335 3902 1.379309 TTTTGGATACGGCCCAGCC 60.379 57.895 0.00 0.00 46.75 4.85
3344 3911 3.660724 GGCCCAGCCCATCTAAGA 58.339 61.111 0.00 0.00 44.06 2.10
3345 3912 1.453669 GGCCCAGCCCATCTAAGAG 59.546 63.158 0.00 0.00 44.06 2.85
3346 3913 1.056700 GGCCCAGCCCATCTAAGAGA 61.057 60.000 0.00 0.00 44.06 3.10
3347 3914 0.107643 GCCCAGCCCATCTAAGAGAC 59.892 60.000 0.00 0.00 0.00 3.36
3348 3915 0.761802 CCCAGCCCATCTAAGAGACC 59.238 60.000 0.00 0.00 0.00 3.85
3349 3916 1.500474 CCAGCCCATCTAAGAGACCA 58.500 55.000 0.00 0.00 0.00 4.02
3350 3917 1.139853 CCAGCCCATCTAAGAGACCAC 59.860 57.143 0.00 0.00 0.00 4.16
3351 3918 2.114616 CAGCCCATCTAAGAGACCACT 58.885 52.381 0.00 0.00 0.00 4.00
3352 3919 2.114616 AGCCCATCTAAGAGACCACTG 58.885 52.381 0.00 0.00 0.00 3.66
3353 3920 2.111384 GCCCATCTAAGAGACCACTGA 58.889 52.381 0.00 0.00 0.00 3.41
3354 3921 2.102252 GCCCATCTAAGAGACCACTGAG 59.898 54.545 0.00 0.00 0.00 3.35
3355 3922 2.102252 CCCATCTAAGAGACCACTGAGC 59.898 54.545 0.00 0.00 0.00 4.26
3356 3923 2.102252 CCATCTAAGAGACCACTGAGCC 59.898 54.545 0.00 0.00 0.00 4.70
3357 3924 1.853963 TCTAAGAGACCACTGAGCCC 58.146 55.000 0.00 0.00 0.00 5.19
3358 3925 1.077169 TCTAAGAGACCACTGAGCCCA 59.923 52.381 0.00 0.00 0.00 5.36
3359 3926 1.480137 CTAAGAGACCACTGAGCCCAG 59.520 57.143 0.00 0.00 45.76 4.45
3372 3939 3.160872 GCCCAGTTAAGAGGCAGAC 57.839 57.895 5.64 0.00 46.34 3.51
3373 3940 0.324943 GCCCAGTTAAGAGGCAGACA 59.675 55.000 5.64 0.00 46.34 3.41
3374 3941 1.677217 GCCCAGTTAAGAGGCAGACAG 60.677 57.143 5.64 0.00 46.34 3.51
3375 3942 1.677217 CCCAGTTAAGAGGCAGACAGC 60.677 57.143 0.00 0.00 44.65 4.40
3386 3953 2.011540 GCAGACAGCAACCCTAGTAC 57.988 55.000 0.00 0.00 44.79 2.73
3387 3954 1.405661 GCAGACAGCAACCCTAGTACC 60.406 57.143 0.00 0.00 44.79 3.34
3388 3955 1.207329 CAGACAGCAACCCTAGTACCC 59.793 57.143 0.00 0.00 0.00 3.69
3389 3956 0.540454 GACAGCAACCCTAGTACCCC 59.460 60.000 0.00 0.00 0.00 4.95
3390 3957 0.178885 ACAGCAACCCTAGTACCCCA 60.179 55.000 0.00 0.00 0.00 4.96
3391 3958 0.988832 CAGCAACCCTAGTACCCCAA 59.011 55.000 0.00 0.00 0.00 4.12
3392 3959 1.564348 CAGCAACCCTAGTACCCCAAT 59.436 52.381 0.00 0.00 0.00 3.16
3393 3960 1.564348 AGCAACCCTAGTACCCCAATG 59.436 52.381 0.00 0.00 0.00 2.82
3394 3961 2.022238 GCAACCCTAGTACCCCAATGC 61.022 57.143 0.00 0.00 0.00 3.56
3395 3962 1.564348 CAACCCTAGTACCCCAATGCT 59.436 52.381 0.00 0.00 0.00 3.79
3396 3963 1.508256 ACCCTAGTACCCCAATGCTC 58.492 55.000 0.00 0.00 0.00 4.26
3397 3964 0.765510 CCCTAGTACCCCAATGCTCC 59.234 60.000 0.00 0.00 0.00 4.70
3398 3965 0.765510 CCTAGTACCCCAATGCTCCC 59.234 60.000 0.00 0.00 0.00 4.30
3399 3966 1.695989 CCTAGTACCCCAATGCTCCCT 60.696 57.143 0.00 0.00 0.00 4.20
3400 3967 2.127708 CTAGTACCCCAATGCTCCCTT 58.872 52.381 0.00 0.00 0.00 3.95
3401 3968 0.919710 AGTACCCCAATGCTCCCTTC 59.080 55.000 0.00 0.00 0.00 3.46
3402 3969 0.106669 GTACCCCAATGCTCCCTTCC 60.107 60.000 0.00 0.00 0.00 3.46
3403 3970 0.253630 TACCCCAATGCTCCCTTCCT 60.254 55.000 0.00 0.00 0.00 3.36
3404 3971 1.149133 ACCCCAATGCTCCCTTCCTT 61.149 55.000 0.00 0.00 0.00 3.36
3405 3972 0.041684 CCCCAATGCTCCCTTCCTTT 59.958 55.000 0.00 0.00 0.00 3.11
3406 3973 1.478631 CCCAATGCTCCCTTCCTTTC 58.521 55.000 0.00 0.00 0.00 2.62
3407 3974 1.478631 CCAATGCTCCCTTCCTTTCC 58.521 55.000 0.00 0.00 0.00 3.13
3408 3975 1.478631 CAATGCTCCCTTCCTTTCCC 58.521 55.000 0.00 0.00 0.00 3.97
3409 3976 1.006400 CAATGCTCCCTTCCTTTCCCT 59.994 52.381 0.00 0.00 0.00 4.20
3410 3977 0.922626 ATGCTCCCTTCCTTTCCCTC 59.077 55.000 0.00 0.00 0.00 4.30
3411 3978 1.208165 TGCTCCCTTCCTTTCCCTCC 61.208 60.000 0.00 0.00 0.00 4.30
3412 3979 1.927569 GCTCCCTTCCTTTCCCTCCC 61.928 65.000 0.00 0.00 0.00 4.30
3413 3980 0.550147 CTCCCTTCCTTTCCCTCCCA 60.550 60.000 0.00 0.00 0.00 4.37
3414 3981 0.550147 TCCCTTCCTTTCCCTCCCAG 60.550 60.000 0.00 0.00 0.00 4.45
3415 3982 0.846870 CCCTTCCTTTCCCTCCCAGT 60.847 60.000 0.00 0.00 0.00 4.00
3416 3983 1.076438 CCTTCCTTTCCCTCCCAGTT 58.924 55.000 0.00 0.00 0.00 3.16
3417 3984 1.429299 CCTTCCTTTCCCTCCCAGTTT 59.571 52.381 0.00 0.00 0.00 2.66
3418 3985 2.158310 CCTTCCTTTCCCTCCCAGTTTT 60.158 50.000 0.00 0.00 0.00 2.43
3419 3986 2.971901 TCCTTTCCCTCCCAGTTTTC 57.028 50.000 0.00 0.00 0.00 2.29
3420 3987 1.073284 TCCTTTCCCTCCCAGTTTTCG 59.927 52.381 0.00 0.00 0.00 3.46
3421 3988 0.881796 CTTTCCCTCCCAGTTTTCGC 59.118 55.000 0.00 0.00 0.00 4.70
3422 3989 0.476771 TTTCCCTCCCAGTTTTCGCT 59.523 50.000 0.00 0.00 0.00 4.93
3423 3990 0.036306 TTCCCTCCCAGTTTTCGCTC 59.964 55.000 0.00 0.00 0.00 5.03
3424 3991 1.377333 CCCTCCCAGTTTTCGCTCC 60.377 63.158 0.00 0.00 0.00 4.70
3425 3992 1.679898 CCTCCCAGTTTTCGCTCCT 59.320 57.895 0.00 0.00 0.00 3.69
3426 3993 0.391793 CCTCCCAGTTTTCGCTCCTC 60.392 60.000 0.00 0.00 0.00 3.71
3427 3994 0.610687 CTCCCAGTTTTCGCTCCTCT 59.389 55.000 0.00 0.00 0.00 3.69
3428 3995 0.608640 TCCCAGTTTTCGCTCCTCTC 59.391 55.000 0.00 0.00 0.00 3.20
3429 3996 0.610687 CCCAGTTTTCGCTCCTCTCT 59.389 55.000 0.00 0.00 0.00 3.10
3430 3997 1.404851 CCCAGTTTTCGCTCCTCTCTC 60.405 57.143 0.00 0.00 0.00 3.20
3431 3998 1.548269 CCAGTTTTCGCTCCTCTCTCT 59.452 52.381 0.00 0.00 0.00 3.10
3432 3999 2.416701 CCAGTTTTCGCTCCTCTCTCTC 60.417 54.545 0.00 0.00 0.00 3.20
3433 4000 1.470890 AGTTTTCGCTCCTCTCTCTCG 59.529 52.381 0.00 0.00 0.00 4.04
3434 4001 1.469308 GTTTTCGCTCCTCTCTCTCGA 59.531 52.381 0.00 0.00 0.00 4.04
3435 4002 1.374560 TTTCGCTCCTCTCTCTCGAG 58.625 55.000 5.93 5.93 38.67 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.246420 ACTTTCTTGATGCTGTATTCACAC 57.754 37.500 0.00 0.00 0.00 3.82
6 7 5.574443 GGCAAACTTTCTTGATGCTGTATTC 59.426 40.000 0.00 0.00 37.20 1.75
7 8 5.010922 TGGCAAACTTTCTTGATGCTGTATT 59.989 36.000 0.00 0.00 37.20 1.89
9 10 3.888323 TGGCAAACTTTCTTGATGCTGTA 59.112 39.130 0.00 0.00 37.20 2.74
10 11 2.694628 TGGCAAACTTTCTTGATGCTGT 59.305 40.909 0.00 0.00 37.20 4.40
11 12 3.374220 TGGCAAACTTTCTTGATGCTG 57.626 42.857 0.00 0.00 37.20 4.41
12 13 4.612264 AATGGCAAACTTTCTTGATGCT 57.388 36.364 0.00 0.00 37.20 3.79
13 14 4.751098 TGAAATGGCAAACTTTCTTGATGC 59.249 37.500 11.95 0.00 33.50 3.91
14 15 5.107220 GCTGAAATGGCAAACTTTCTTGATG 60.107 40.000 11.95 1.72 33.50 3.07
15 16 4.992951 GCTGAAATGGCAAACTTTCTTGAT 59.007 37.500 11.95 0.00 33.50 2.57
16 17 4.099881 AGCTGAAATGGCAAACTTTCTTGA 59.900 37.500 11.95 0.00 33.50 3.02
17 18 4.210537 CAGCTGAAATGGCAAACTTTCTTG 59.789 41.667 8.42 7.18 33.50 3.02
18 19 4.141869 ACAGCTGAAATGGCAAACTTTCTT 60.142 37.500 23.35 0.00 33.50 2.52
19 20 3.385755 ACAGCTGAAATGGCAAACTTTCT 59.614 39.130 23.35 0.00 33.50 2.52
20 21 3.721035 ACAGCTGAAATGGCAAACTTTC 58.279 40.909 23.35 5.34 33.06 2.62
21 22 3.132646 TGACAGCTGAAATGGCAAACTTT 59.867 39.130 23.35 0.00 31.08 2.66
22 23 2.694628 TGACAGCTGAAATGGCAAACTT 59.305 40.909 23.35 0.00 31.08 2.66
23 24 2.035066 GTGACAGCTGAAATGGCAAACT 59.965 45.455 23.35 0.00 37.45 2.66
24 25 2.223782 TGTGACAGCTGAAATGGCAAAC 60.224 45.455 23.35 5.28 37.45 2.93
25 26 2.030371 TGTGACAGCTGAAATGGCAAA 58.970 42.857 23.35 0.00 37.45 3.68
26 27 1.337703 GTGTGACAGCTGAAATGGCAA 59.662 47.619 23.35 0.00 37.45 4.52
27 28 0.953727 GTGTGACAGCTGAAATGGCA 59.046 50.000 23.35 0.00 31.73 4.92
28 29 0.110056 CGTGTGACAGCTGAAATGGC 60.110 55.000 23.35 4.87 0.00 4.40
29 30 1.069703 CACGTGTGACAGCTGAAATGG 60.070 52.381 23.35 7.28 0.00 3.16
30 31 1.069703 CCACGTGTGACAGCTGAAATG 60.070 52.381 23.35 10.17 0.00 2.32
31 32 1.229428 CCACGTGTGACAGCTGAAAT 58.771 50.000 23.35 0.00 0.00 2.17
32 33 1.436195 GCCACGTGTGACAGCTGAAA 61.436 55.000 23.35 4.66 0.00 2.69
33 34 1.887242 GCCACGTGTGACAGCTGAA 60.887 57.895 23.35 5.08 0.00 3.02
34 35 2.280119 GCCACGTGTGACAGCTGA 60.280 61.111 23.35 0.00 0.00 4.26
35 36 2.280389 AGCCACGTGTGACAGCTG 60.280 61.111 13.48 13.48 31.23 4.24
36 37 2.280389 CAGCCACGTGTGACAGCT 60.280 61.111 15.65 12.53 0.00 4.24
37 38 3.349006 CCAGCCACGTGTGACAGC 61.349 66.667 15.65 10.24 0.00 4.40
38 39 1.956170 GTCCAGCCACGTGTGACAG 60.956 63.158 15.65 0.00 0.00 3.51
39 40 2.108157 GTCCAGCCACGTGTGACA 59.892 61.111 15.65 0.00 0.00 3.58
42 43 1.961277 GAAGGTCCAGCCACGTGTG 60.961 63.158 15.65 7.01 40.61 3.82
45 46 4.681978 GCGAAGGTCCAGCCACGT 62.682 66.667 0.00 0.00 39.87 4.49
48 49 3.390521 ATCGCGAAGGTCCAGCCA 61.391 61.111 15.24 0.00 40.61 4.75
54 55 1.855360 GATGAACTCATCGCGAAGGTC 59.145 52.381 15.24 16.38 42.66 3.85
66 67 0.452784 GCAACCGCGTTGATGAACTC 60.453 55.000 20.50 2.74 45.28 3.01
68 69 1.442017 GGCAACCGCGTTGATGAAC 60.442 57.895 20.50 6.55 45.28 3.18
90 91 2.028112 TCAGGATCTTTTCACCACCTCG 60.028 50.000 0.00 0.00 0.00 4.63
115 116 9.668497 GGATTTAACTAACTATGTGTCCTCTTT 57.332 33.333 0.00 0.00 0.00 2.52
116 117 9.047947 AGGATTTAACTAACTATGTGTCCTCTT 57.952 33.333 0.00 0.00 0.00 2.85
121 122 7.927092 GGAGGAGGATTTAACTAACTATGTGTC 59.073 40.741 0.00 0.00 0.00 3.67
366 368 1.376683 GCTGGAACGGTGTATGGCA 60.377 57.895 0.00 0.00 36.83 4.92
528 531 1.691434 GAGGAGGGATGTGAGGATGTC 59.309 57.143 0.00 0.00 0.00 3.06
559 562 1.253100 GGATTCCGTTTTGAAGCCCA 58.747 50.000 0.00 0.00 43.43 5.36
580 583 1.072331 GAGCTGGAAAGGTGGAGACAA 59.928 52.381 0.00 0.00 46.06 3.18
581 584 0.687354 GAGCTGGAAAGGTGGAGACA 59.313 55.000 0.00 0.00 38.70 3.41
616 619 1.378514 GGCCGGTGATTGTGTGGAT 60.379 57.895 1.90 0.00 0.00 3.41
691 694 2.267351 CCGCAAATGACAGGTGGCA 61.267 57.895 0.00 0.00 37.54 4.92
758 761 5.600484 ACTTTGTAATTGTTTGGTGGATGGA 59.400 36.000 0.00 0.00 0.00 3.41
759 762 5.695816 CACTTTGTAATTGTTTGGTGGATGG 59.304 40.000 0.00 0.00 0.00 3.51
760 763 6.279882 ACACTTTGTAATTGTTTGGTGGATG 58.720 36.000 0.00 0.00 0.00 3.51
761 764 6.478512 ACACTTTGTAATTGTTTGGTGGAT 57.521 33.333 0.00 0.00 0.00 3.41
762 765 5.923733 ACACTTTGTAATTGTTTGGTGGA 57.076 34.783 0.00 0.00 0.00 4.02
763 766 6.866248 GGATACACTTTGTAATTGTTTGGTGG 59.134 38.462 0.00 0.00 36.31 4.61
764 767 7.657336 AGGATACACTTTGTAATTGTTTGGTG 58.343 34.615 0.00 0.00 36.31 4.17
765 768 7.833285 AGGATACACTTTGTAATTGTTTGGT 57.167 32.000 0.00 0.00 36.31 3.67
766 769 8.788806 TGTAGGATACACTTTGTAATTGTTTGG 58.211 33.333 0.00 0.00 46.14 3.28
783 786 4.694037 GTGGTTTGGTCTTGTGTAGGATAC 59.306 45.833 0.00 0.00 43.42 2.24
784 787 4.348461 TGTGGTTTGGTCTTGTGTAGGATA 59.652 41.667 0.00 0.00 0.00 2.59
785 788 3.137544 TGTGGTTTGGTCTTGTGTAGGAT 59.862 43.478 0.00 0.00 0.00 3.24
786 789 2.506231 TGTGGTTTGGTCTTGTGTAGGA 59.494 45.455 0.00 0.00 0.00 2.94
787 790 2.925724 TGTGGTTTGGTCTTGTGTAGG 58.074 47.619 0.00 0.00 0.00 3.18
788 791 5.514274 AAATGTGGTTTGGTCTTGTGTAG 57.486 39.130 0.00 0.00 0.00 2.74
789 792 7.285629 TGAATAAATGTGGTTTGGTCTTGTGTA 59.714 33.333 0.00 0.00 0.00 2.90
790 793 6.097554 TGAATAAATGTGGTTTGGTCTTGTGT 59.902 34.615 0.00 0.00 0.00 3.72
791 794 6.511416 TGAATAAATGTGGTTTGGTCTTGTG 58.489 36.000 0.00 0.00 0.00 3.33
792 795 6.723298 TGAATAAATGTGGTTTGGTCTTGT 57.277 33.333 0.00 0.00 0.00 3.16
793 796 7.331687 GGAATGAATAAATGTGGTTTGGTCTTG 59.668 37.037 0.00 0.00 0.00 3.02
794 797 7.016072 TGGAATGAATAAATGTGGTTTGGTCTT 59.984 33.333 0.00 0.00 0.00 3.01
795 798 6.496565 TGGAATGAATAAATGTGGTTTGGTCT 59.503 34.615 0.00 0.00 0.00 3.85
796 799 6.696411 TGGAATGAATAAATGTGGTTTGGTC 58.304 36.000 0.00 0.00 0.00 4.02
797 800 6.295802 CCTGGAATGAATAAATGTGGTTTGGT 60.296 38.462 0.00 0.00 0.00 3.67
798 801 6.070881 TCCTGGAATGAATAAATGTGGTTTGG 60.071 38.462 0.00 0.00 0.00 3.28
799 802 6.934056 TCCTGGAATGAATAAATGTGGTTTG 58.066 36.000 0.00 0.00 0.00 2.93
800 803 7.738437 ATCCTGGAATGAATAAATGTGGTTT 57.262 32.000 0.00 0.00 0.00 3.27
801 804 8.837099 TTATCCTGGAATGAATAAATGTGGTT 57.163 30.769 0.00 0.00 0.00 3.67
802 805 8.837099 TTTATCCTGGAATGAATAAATGTGGT 57.163 30.769 0.00 0.00 0.00 4.16
803 806 9.754382 CTTTTATCCTGGAATGAATAAATGTGG 57.246 33.333 0.00 0.00 0.00 4.17
808 811 9.632638 CCTCTCTTTTATCCTGGAATGAATAAA 57.367 33.333 0.00 0.00 0.00 1.40
809 812 7.721399 GCCTCTCTTTTATCCTGGAATGAATAA 59.279 37.037 0.00 0.00 0.00 1.40
810 813 7.072961 AGCCTCTCTTTTATCCTGGAATGAATA 59.927 37.037 0.00 0.00 0.00 1.75
811 814 6.067350 GCCTCTCTTTTATCCTGGAATGAAT 58.933 40.000 0.00 0.00 0.00 2.57
812 815 5.192522 AGCCTCTCTTTTATCCTGGAATGAA 59.807 40.000 0.00 0.00 0.00 2.57
813 816 4.723789 AGCCTCTCTTTTATCCTGGAATGA 59.276 41.667 0.00 0.00 0.00 2.57
814 817 5.046288 AGCCTCTCTTTTATCCTGGAATG 57.954 43.478 0.00 0.00 0.00 2.67
815 818 4.103943 GGAGCCTCTCTTTTATCCTGGAAT 59.896 45.833 0.00 0.00 0.00 3.01
816 819 3.456277 GGAGCCTCTCTTTTATCCTGGAA 59.544 47.826 0.00 0.00 0.00 3.53
817 820 3.041946 GGAGCCTCTCTTTTATCCTGGA 58.958 50.000 0.00 0.00 0.00 3.86
818 821 2.774234 TGGAGCCTCTCTTTTATCCTGG 59.226 50.000 0.00 0.00 0.00 4.45
819 822 4.494091 TTGGAGCCTCTCTTTTATCCTG 57.506 45.455 0.00 0.00 0.00 3.86
820 823 4.289672 TGTTTGGAGCCTCTCTTTTATCCT 59.710 41.667 0.00 0.00 0.00 3.24
821 824 4.589908 TGTTTGGAGCCTCTCTTTTATCC 58.410 43.478 0.00 0.00 0.00 2.59
822 825 5.491982 TCTGTTTGGAGCCTCTCTTTTATC 58.508 41.667 0.00 0.00 0.00 1.75
823 826 5.505181 TCTGTTTGGAGCCTCTCTTTTAT 57.495 39.130 0.00 0.00 0.00 1.40
824 827 4.974645 TCTGTTTGGAGCCTCTCTTTTA 57.025 40.909 0.00 0.00 0.00 1.52
825 828 3.864789 TCTGTTTGGAGCCTCTCTTTT 57.135 42.857 0.00 0.00 0.00 2.27
826 829 3.481453 GTTCTGTTTGGAGCCTCTCTTT 58.519 45.455 0.00 0.00 0.00 2.52
827 830 2.224646 GGTTCTGTTTGGAGCCTCTCTT 60.225 50.000 0.00 0.00 34.43 2.85
828 831 1.349357 GGTTCTGTTTGGAGCCTCTCT 59.651 52.381 0.00 0.00 34.43 3.10
829 832 1.349357 AGGTTCTGTTTGGAGCCTCTC 59.651 52.381 0.00 0.00 41.96 3.20
830 833 1.072965 CAGGTTCTGTTTGGAGCCTCT 59.927 52.381 0.00 0.00 43.43 3.69
831 834 1.528129 CAGGTTCTGTTTGGAGCCTC 58.472 55.000 0.00 0.00 43.43 4.70
832 835 0.111253 CCAGGTTCTGTTTGGAGCCT 59.889 55.000 0.00 0.00 45.58 4.58
833 836 0.895559 CCCAGGTTCTGTTTGGAGCC 60.896 60.000 0.00 0.00 36.95 4.70
834 837 1.527433 GCCCAGGTTCTGTTTGGAGC 61.527 60.000 0.00 0.00 33.76 4.70
835 838 0.895559 GGCCCAGGTTCTGTTTGGAG 60.896 60.000 0.00 0.00 33.76 3.86
836 839 1.152830 GGCCCAGGTTCTGTTTGGA 59.847 57.895 0.00 0.00 33.76 3.53
837 840 0.758685 TTGGCCCAGGTTCTGTTTGG 60.759 55.000 0.00 0.00 0.00 3.28
838 841 0.675633 CTTGGCCCAGGTTCTGTTTG 59.324 55.000 0.00 0.00 0.00 2.93
839 842 1.115326 GCTTGGCCCAGGTTCTGTTT 61.115 55.000 5.89 0.00 0.00 2.83
840 843 1.531602 GCTTGGCCCAGGTTCTGTT 60.532 57.895 5.89 0.00 0.00 3.16
841 844 2.116125 GCTTGGCCCAGGTTCTGT 59.884 61.111 5.89 0.00 0.00 3.41
842 845 2.677875 GGCTTGGCCCAGGTTCTG 60.678 66.667 5.89 0.00 44.06 3.02
884 887 2.028476 CCCAGTTCTCACGGATGTGTAA 60.028 50.000 0.00 0.00 46.49 2.41
888 891 0.608640 GTCCCAGTTCTCACGGATGT 59.391 55.000 0.00 0.00 0.00 3.06
901 904 2.639839 TCTTTCCTTCCTCTTGTCCCAG 59.360 50.000 0.00 0.00 0.00 4.45
904 907 2.640332 AGGTCTTTCCTTCCTCTTGTCC 59.360 50.000 0.00 0.00 45.67 4.02
952 955 1.000739 CGGTGGTGGTAGAGGGGTA 59.999 63.158 0.00 0.00 0.00 3.69
953 956 2.284405 CGGTGGTGGTAGAGGGGT 60.284 66.667 0.00 0.00 0.00 4.95
955 958 2.356780 GGTCGGTGGTGGTAGAGGG 61.357 68.421 0.00 0.00 0.00 4.30
969 972 3.775654 GCTGGGAGTGGGAGGTCG 61.776 72.222 0.00 0.00 0.00 4.79
1054 1061 1.118356 ACGAGGATCTCCCAGATGGC 61.118 60.000 0.00 0.00 34.53 4.40
1085 1092 1.907739 CTGCGGAGGAGGGATTTGA 59.092 57.895 0.00 0.00 44.33 2.69
1249 1256 4.265056 GACCCCTGCACGGTGGTT 62.265 66.667 10.60 0.00 36.73 3.67
1297 1304 2.034221 GGGAGCCGTTTTCAGCCT 59.966 61.111 0.00 0.00 0.00 4.58
1315 1322 1.918609 GACGCATGAACTCGTTAGGAC 59.081 52.381 0.00 0.00 39.22 3.85
1318 1325 0.914551 CGGACGCATGAACTCGTTAG 59.085 55.000 0.00 0.00 39.22 2.34
1321 1328 1.733041 CACGGACGCATGAACTCGT 60.733 57.895 0.00 0.00 42.09 4.18
1322 1329 3.071459 GCACGGACGCATGAACTCG 62.071 63.158 0.00 0.00 0.00 4.18
1324 1331 1.738099 GAGCACGGACGCATGAACT 60.738 57.895 0.00 0.00 0.00 3.01
1326 1333 2.434185 GGAGCACGGACGCATGAA 60.434 61.111 0.00 0.00 0.00 2.57
1327 1334 3.356639 GAGGAGCACGGACGCATGA 62.357 63.158 0.00 0.00 0.00 3.07
1328 1335 2.887568 GAGGAGCACGGACGCATG 60.888 66.667 0.00 0.00 0.00 4.06
1329 1336 4.498520 CGAGGAGCACGGACGCAT 62.499 66.667 0.00 0.00 0.00 4.73
1344 1360 0.179015 AGGCCTCGAGATAGAAGCGA 60.179 55.000 15.71 0.00 0.00 4.93
1383 1399 2.282820 GTCGTCAAATTCGATGGAGAGC 59.717 50.000 0.00 0.00 39.45 4.09
1395 1411 2.353889 GCAGATGCAGATGTCGTCAAAT 59.646 45.455 0.00 0.00 41.59 2.32
1437 1453 3.602513 AACCTGCTGGAGAGCTGCG 62.603 63.158 17.64 0.00 46.39 5.18
1440 1456 1.910772 ACGAACCTGCTGGAGAGCT 60.911 57.895 17.64 0.00 46.39 4.09
1441 1457 1.739562 CACGAACCTGCTGGAGAGC 60.740 63.158 17.64 1.60 46.44 4.09
1508 1527 2.371841 TCATCCTGGTACAACAACAGCT 59.628 45.455 0.00 0.00 38.70 4.24
1549 1574 2.716217 GCCAGAGCCTACTGTGAAAAT 58.284 47.619 0.00 0.00 39.53 1.82
1599 1628 1.732259 CAATCTTCCAGTTCGTTCGGG 59.268 52.381 0.00 0.00 0.00 5.14
1604 1633 0.322546 GGGGCAATCTTCCAGTTCGT 60.323 55.000 0.00 0.00 0.00 3.85
1872 1915 0.901124 GACACTGGTGCCTGATCTCT 59.099 55.000 0.17 0.00 0.00 3.10
2081 2134 2.910319 ACAACATAACCCTCTAGTGCCA 59.090 45.455 0.00 0.00 0.00 4.92
2128 2184 7.281774 CCTCTAAGTGCTGACAACATAATCATT 59.718 37.037 0.00 0.00 0.00 2.57
2231 2293 2.002586 CGAGTTGACAGCATAACCAGG 58.997 52.381 0.00 0.00 0.00 4.45
2233 2295 2.831685 ACGAGTTGACAGCATAACCA 57.168 45.000 0.00 0.00 0.00 3.67
2461 2751 3.181449 TGGTTGGCAGCTAAAGTGAAGTA 60.181 43.478 0.24 0.00 0.00 2.24
2543 2846 6.116126 ACCATGATAACCTTTCTTCTGCTAC 58.884 40.000 0.00 0.00 0.00 3.58
2840 3399 0.247736 AACGGAGACATGAGGCAGAC 59.752 55.000 0.00 0.00 0.00 3.51
3115 3682 9.438228 TGAATGAATTGCAACATAACATTTCAT 57.562 25.926 12.58 12.58 43.42 2.57
3159 3726 2.481276 CCTGAAGTATCGGTGCATTCGA 60.481 50.000 15.50 15.50 41.04 3.71
3160 3727 1.860950 CCTGAAGTATCGGTGCATTCG 59.139 52.381 6.14 6.14 0.00 3.34
3161 3728 1.599542 GCCTGAAGTATCGGTGCATTC 59.400 52.381 0.00 0.00 31.95 2.67
3162 3729 1.065491 TGCCTGAAGTATCGGTGCATT 60.065 47.619 0.00 0.00 34.94 3.56
3163 3730 0.541392 TGCCTGAAGTATCGGTGCAT 59.459 50.000 0.00 0.00 34.94 3.96
3164 3731 0.323302 TTGCCTGAAGTATCGGTGCA 59.677 50.000 0.00 0.00 36.77 4.57
3165 3732 0.727398 GTTGCCTGAAGTATCGGTGC 59.273 55.000 0.00 0.00 0.00 5.01
3166 3733 2.386661 AGTTGCCTGAAGTATCGGTG 57.613 50.000 0.00 0.00 0.00 4.94
3167 3734 2.159085 GCTAGTTGCCTGAAGTATCGGT 60.159 50.000 0.00 0.00 35.15 4.69
3168 3735 2.474816 GCTAGTTGCCTGAAGTATCGG 58.525 52.381 0.00 0.00 35.15 4.18
3169 3736 2.120232 CGCTAGTTGCCTGAAGTATCG 58.880 52.381 0.00 0.00 38.78 2.92
3170 3737 3.438297 TCGCTAGTTGCCTGAAGTATC 57.562 47.619 0.00 0.00 38.78 2.24
3171 3738 3.887621 TTCGCTAGTTGCCTGAAGTAT 57.112 42.857 0.00 0.00 38.78 2.12
3172 3739 3.733988 CGATTCGCTAGTTGCCTGAAGTA 60.734 47.826 0.00 0.00 38.78 2.24
3173 3740 2.622436 GATTCGCTAGTTGCCTGAAGT 58.378 47.619 0.00 0.00 38.78 3.01
3174 3741 1.590238 CGATTCGCTAGTTGCCTGAAG 59.410 52.381 0.00 0.00 38.78 3.02
3175 3742 1.640428 CGATTCGCTAGTTGCCTGAA 58.360 50.000 0.00 0.00 38.78 3.02
3176 3743 0.179111 CCGATTCGCTAGTTGCCTGA 60.179 55.000 0.00 0.00 38.78 3.86
3177 3744 0.460284 ACCGATTCGCTAGTTGCCTG 60.460 55.000 0.00 0.00 38.78 4.85
3178 3745 1.108776 TACCGATTCGCTAGTTGCCT 58.891 50.000 0.00 0.00 38.78 4.75
3179 3746 2.059541 GATACCGATTCGCTAGTTGCC 58.940 52.381 0.00 0.00 38.78 4.52
3180 3747 1.714460 CGATACCGATTCGCTAGTTGC 59.286 52.381 0.00 0.00 38.22 4.17
3181 3748 2.031420 TCCGATACCGATTCGCTAGTTG 60.031 50.000 0.00 0.00 38.22 3.16
3182 3749 2.224606 TCCGATACCGATTCGCTAGTT 58.775 47.619 0.00 0.00 38.22 2.24
3183 3750 1.888215 TCCGATACCGATTCGCTAGT 58.112 50.000 0.00 0.00 38.22 2.57
3184 3751 3.242673 GGTATCCGATACCGATTCGCTAG 60.243 52.174 19.62 0.00 45.20 3.42
3185 3752 2.679837 GGTATCCGATACCGATTCGCTA 59.320 50.000 19.62 0.00 45.20 4.26
3186 3753 1.471684 GGTATCCGATACCGATTCGCT 59.528 52.381 19.62 0.00 45.20 4.93
3187 3754 1.905449 GGTATCCGATACCGATTCGC 58.095 55.000 19.62 0.00 45.20 4.70
3207 3774 2.031437 GCGGAGTATCGGTATCGGATAC 59.969 54.545 17.85 17.85 37.79 2.24
3208 3775 2.093288 AGCGGAGTATCGGTATCGGATA 60.093 50.000 0.00 0.00 39.18 2.59
3209 3776 1.093159 GCGGAGTATCGGTATCGGAT 58.907 55.000 0.00 0.00 37.79 4.18
3210 3777 0.035881 AGCGGAGTATCGGTATCGGA 59.964 55.000 0.00 0.00 39.18 4.55
3211 3778 0.447011 GAGCGGAGTATCGGTATCGG 59.553 60.000 0.00 0.00 41.12 4.18
3212 3779 1.154197 TGAGCGGAGTATCGGTATCG 58.846 55.000 0.00 0.00 41.12 2.92
3213 3780 3.242349 CGTATGAGCGGAGTATCGGTATC 60.242 52.174 0.00 0.00 41.12 2.24
3214 3781 2.676839 CGTATGAGCGGAGTATCGGTAT 59.323 50.000 0.00 0.00 41.12 2.73
3215 3782 2.071540 CGTATGAGCGGAGTATCGGTA 58.928 52.381 0.00 0.00 41.12 4.02
3216 3783 0.873054 CGTATGAGCGGAGTATCGGT 59.127 55.000 0.00 0.00 43.85 4.69
3217 3784 0.454620 GCGTATGAGCGGAGTATCGG 60.455 60.000 0.00 0.00 38.63 4.18
3218 3785 0.454620 GGCGTATGAGCGGAGTATCG 60.455 60.000 0.00 0.00 38.18 2.92
3219 3786 0.109226 GGGCGTATGAGCGGAGTATC 60.109 60.000 0.00 0.00 38.18 2.24
3220 3787 1.533469 GGGGCGTATGAGCGGAGTAT 61.533 60.000 0.00 0.00 38.18 2.12
3221 3788 2.198287 GGGGCGTATGAGCGGAGTA 61.198 63.158 0.00 0.00 38.18 2.59
3222 3789 3.537874 GGGGCGTATGAGCGGAGT 61.538 66.667 0.00 0.00 38.18 3.85
3223 3790 3.227276 AGGGGCGTATGAGCGGAG 61.227 66.667 0.00 0.00 38.18 4.63
3224 3791 3.536917 CAGGGGCGTATGAGCGGA 61.537 66.667 0.00 0.00 38.18 5.54
3225 3792 1.532604 TATCAGGGGCGTATGAGCGG 61.533 60.000 0.00 0.00 38.18 5.52
3226 3793 0.388649 GTATCAGGGGCGTATGAGCG 60.389 60.000 0.00 0.00 38.18 5.03
3227 3794 0.388649 CGTATCAGGGGCGTATGAGC 60.389 60.000 0.00 0.00 0.00 4.26
3228 3795 0.959553 ACGTATCAGGGGCGTATGAG 59.040 55.000 0.00 0.00 37.07 2.90
3229 3796 2.275134 TACGTATCAGGGGCGTATGA 57.725 50.000 0.00 0.00 39.64 2.15
3232 3799 1.202915 TGGATACGTATCAGGGGCGTA 60.203 52.381 31.03 8.73 43.66 4.42
3233 3800 0.468585 TGGATACGTATCAGGGGCGT 60.469 55.000 31.03 0.00 41.86 5.68
3234 3801 0.677288 TTGGATACGTATCAGGGGCG 59.323 55.000 31.03 0.00 42.51 6.13
3235 3802 1.002087 CCTTGGATACGTATCAGGGGC 59.998 57.143 31.03 17.03 42.51 5.80
3236 3803 2.563179 CTCCTTGGATACGTATCAGGGG 59.437 54.545 31.03 25.91 42.51 4.79
3237 3804 3.231818 ACTCCTTGGATACGTATCAGGG 58.768 50.000 31.03 26.56 42.51 4.45
3238 3805 5.125739 GGATACTCCTTGGATACGTATCAGG 59.874 48.000 31.03 28.09 38.62 3.86
3239 3806 5.710567 TGGATACTCCTTGGATACGTATCAG 59.289 44.000 31.03 22.55 38.62 2.90
3240 3807 5.637127 TGGATACTCCTTGGATACGTATCA 58.363 41.667 31.03 17.58 38.62 2.15
3241 3808 6.377429 TCATGGATACTCCTTGGATACGTATC 59.623 42.308 24.49 24.49 40.82 2.24
3242 3809 6.253758 TCATGGATACTCCTTGGATACGTAT 58.746 40.000 8.05 8.05 40.82 3.06
3243 3810 5.637127 TCATGGATACTCCTTGGATACGTA 58.363 41.667 0.00 0.00 40.82 3.57
3244 3811 4.480115 TCATGGATACTCCTTGGATACGT 58.520 43.478 8.65 0.00 40.82 3.57
3245 3812 5.468540 TTCATGGATACTCCTTGGATACG 57.531 43.478 8.65 0.00 40.82 3.06
3246 3813 9.220767 GTTTATTCATGGATACTCCTTGGATAC 57.779 37.037 8.75 0.77 40.11 2.24
3247 3814 8.094548 CGTTTATTCATGGATACTCCTTGGATA 58.905 37.037 0.00 7.35 37.93 2.59
3248 3815 6.936900 CGTTTATTCATGGATACTCCTTGGAT 59.063 38.462 7.70 7.70 41.34 3.41
3249 3816 6.099125 TCGTTTATTCATGGATACTCCTTGGA 59.901 38.462 0.00 1.69 40.82 3.53
3250 3817 6.288294 TCGTTTATTCATGGATACTCCTTGG 58.712 40.000 0.00 0.00 40.82 3.61
3251 3818 7.969536 ATCGTTTATTCATGGATACTCCTTG 57.030 36.000 0.00 3.32 41.54 3.61
3252 3819 8.980481 AAATCGTTTATTCATGGATACTCCTT 57.020 30.769 0.00 0.00 37.46 3.36
3270 3837 9.840427 CAGGTATCTGAATTGTTTTAAATCGTT 57.160 29.630 0.00 0.00 43.49 3.85
3271 3838 9.226606 TCAGGTATCTGAATTGTTTTAAATCGT 57.773 29.630 2.30 0.00 46.08 3.73
3287 3854 8.043710 ACTGAAAAAGTATCCTTCAGGTATCTG 58.956 37.037 13.82 0.00 46.75 2.90
3288 3855 8.152023 ACTGAAAAAGTATCCTTCAGGTATCT 57.848 34.615 13.82 0.00 46.75 1.98
3289 3856 8.794335 AACTGAAAAAGTATCCTTCAGGTATC 57.206 34.615 13.82 0.00 43.58 2.24
3290 3857 7.549488 CGAACTGAAAAAGTATCCTTCAGGTAT 59.451 37.037 13.82 2.28 44.99 2.73
3291 3858 6.872020 CGAACTGAAAAAGTATCCTTCAGGTA 59.128 38.462 13.82 0.00 44.99 3.08
3293 3860 5.701290 ACGAACTGAAAAAGTATCCTTCAGG 59.299 40.000 13.82 0.00 46.75 3.86
3295 3862 7.562454 AAACGAACTGAAAAAGTATCCTTCA 57.438 32.000 0.00 0.00 38.56 3.02
3296 3863 7.378728 CCAAAACGAACTGAAAAAGTATCCTTC 59.621 37.037 0.00 0.00 38.56 3.46
3297 3864 7.067737 TCCAAAACGAACTGAAAAAGTATCCTT 59.932 33.333 0.00 0.00 38.56 3.36
3298 3865 6.544564 TCCAAAACGAACTGAAAAAGTATCCT 59.455 34.615 0.00 0.00 38.56 3.24
3299 3866 6.731164 TCCAAAACGAACTGAAAAAGTATCC 58.269 36.000 0.00 0.00 38.56 2.59
3300 3867 9.326339 GTATCCAAAACGAACTGAAAAAGTATC 57.674 33.333 0.00 0.00 38.56 2.24
3301 3868 8.013378 CGTATCCAAAACGAACTGAAAAAGTAT 58.987 33.333 0.00 0.00 42.90 2.12
3302 3869 7.346695 CGTATCCAAAACGAACTGAAAAAGTA 58.653 34.615 0.00 0.00 42.90 2.24
3303 3870 6.196571 CGTATCCAAAACGAACTGAAAAAGT 58.803 36.000 0.00 0.00 42.90 2.66
3304 3871 5.623673 CCGTATCCAAAACGAACTGAAAAAG 59.376 40.000 0.00 0.00 42.90 2.27
3305 3872 5.512473 CCGTATCCAAAACGAACTGAAAAA 58.488 37.500 0.00 0.00 42.90 1.94
3306 3873 4.555116 GCCGTATCCAAAACGAACTGAAAA 60.555 41.667 0.00 0.00 42.90 2.29
3307 3874 3.058777 GCCGTATCCAAAACGAACTGAAA 60.059 43.478 0.00 0.00 42.90 2.69
3308 3875 2.481185 GCCGTATCCAAAACGAACTGAA 59.519 45.455 0.00 0.00 42.90 3.02
3309 3876 2.070783 GCCGTATCCAAAACGAACTGA 58.929 47.619 0.00 0.00 42.90 3.41
3310 3877 1.129811 GGCCGTATCCAAAACGAACTG 59.870 52.381 0.00 0.00 42.90 3.16
3311 3878 1.445871 GGCCGTATCCAAAACGAACT 58.554 50.000 0.00 0.00 42.90 3.01
3312 3879 0.448990 GGGCCGTATCCAAAACGAAC 59.551 55.000 0.00 0.00 42.90 3.95
3313 3880 0.036448 TGGGCCGTATCCAAAACGAA 59.964 50.000 0.00 0.00 42.90 3.85
3314 3881 0.391927 CTGGGCCGTATCCAAAACGA 60.392 55.000 0.00 0.00 42.90 3.85
3315 3882 1.988834 GCTGGGCCGTATCCAAAACG 61.989 60.000 0.00 0.00 40.01 3.60
3316 3883 1.663379 GGCTGGGCCGTATCCAAAAC 61.663 60.000 0.00 0.00 39.62 2.43
3317 3884 1.379309 GGCTGGGCCGTATCCAAAA 60.379 57.895 0.00 0.00 39.62 2.44
3318 3885 2.274104 GGCTGGGCCGTATCCAAA 59.726 61.111 0.00 0.00 39.62 3.28
3328 3895 0.107643 GTCTCTTAGATGGGCTGGGC 59.892 60.000 0.00 0.00 0.00 5.36
3329 3896 0.761802 GGTCTCTTAGATGGGCTGGG 59.238 60.000 0.00 0.00 0.00 4.45
3330 3897 1.139853 GTGGTCTCTTAGATGGGCTGG 59.860 57.143 0.00 0.00 0.00 4.85
3331 3898 2.114616 AGTGGTCTCTTAGATGGGCTG 58.885 52.381 0.00 0.00 0.00 4.85
3332 3899 2.114616 CAGTGGTCTCTTAGATGGGCT 58.885 52.381 0.00 0.00 0.00 5.19
3333 3900 2.102252 CTCAGTGGTCTCTTAGATGGGC 59.898 54.545 0.00 0.00 0.00 5.36
3334 3901 2.102252 GCTCAGTGGTCTCTTAGATGGG 59.898 54.545 0.00 0.00 0.00 4.00
3335 3902 2.102252 GGCTCAGTGGTCTCTTAGATGG 59.898 54.545 0.00 0.00 0.00 3.51
3336 3903 2.102252 GGGCTCAGTGGTCTCTTAGATG 59.898 54.545 0.00 0.00 0.00 2.90
3337 3904 2.292521 TGGGCTCAGTGGTCTCTTAGAT 60.293 50.000 0.00 0.00 0.00 1.98
3338 3905 1.077169 TGGGCTCAGTGGTCTCTTAGA 59.923 52.381 0.00 0.00 0.00 2.10
3339 3906 1.480137 CTGGGCTCAGTGGTCTCTTAG 59.520 57.143 5.06 0.00 36.30 2.18
3340 3907 1.561643 CTGGGCTCAGTGGTCTCTTA 58.438 55.000 5.06 0.00 36.30 2.10
3341 3908 2.370718 CTGGGCTCAGTGGTCTCTT 58.629 57.895 5.06 0.00 36.30 2.85
3342 3909 4.126908 CTGGGCTCAGTGGTCTCT 57.873 61.111 5.06 0.00 36.30 3.10
3350 3917 0.615331 TGCCTCTTAACTGGGCTCAG 59.385 55.000 13.44 13.44 45.45 3.35
3351 3918 0.615331 CTGCCTCTTAACTGGGCTCA 59.385 55.000 0.00 0.00 45.45 4.26
3352 3919 0.905357 TCTGCCTCTTAACTGGGCTC 59.095 55.000 0.00 0.00 45.45 4.70
3353 3920 0.615850 GTCTGCCTCTTAACTGGGCT 59.384 55.000 0.00 0.00 45.45 5.19
3354 3921 0.324943 TGTCTGCCTCTTAACTGGGC 59.675 55.000 0.00 0.00 45.45 5.36
3355 3922 1.677217 GCTGTCTGCCTCTTAACTGGG 60.677 57.143 0.00 0.00 35.15 4.45
3356 3923 1.002430 TGCTGTCTGCCTCTTAACTGG 59.998 52.381 0.00 0.00 42.00 4.00
3357 3924 2.462456 TGCTGTCTGCCTCTTAACTG 57.538 50.000 0.00 0.00 42.00 3.16
3358 3925 2.551071 GGTTGCTGTCTGCCTCTTAACT 60.551 50.000 0.00 0.00 42.00 2.24
3359 3926 1.807142 GGTTGCTGTCTGCCTCTTAAC 59.193 52.381 0.00 0.00 42.00 2.01
3360 3927 1.271379 GGGTTGCTGTCTGCCTCTTAA 60.271 52.381 0.00 0.00 42.00 1.85
3361 3928 0.324943 GGGTTGCTGTCTGCCTCTTA 59.675 55.000 0.00 0.00 42.00 2.10
3362 3929 1.073897 GGGTTGCTGTCTGCCTCTT 59.926 57.895 0.00 0.00 42.00 2.85
3363 3930 0.545309 TAGGGTTGCTGTCTGCCTCT 60.545 55.000 0.00 0.00 42.00 3.69
3364 3931 0.107945 CTAGGGTTGCTGTCTGCCTC 60.108 60.000 0.00 0.00 42.00 4.70
3365 3932 0.838122 ACTAGGGTTGCTGTCTGCCT 60.838 55.000 0.00 0.00 42.00 4.75
3366 3933 0.902531 TACTAGGGTTGCTGTCTGCC 59.097 55.000 0.00 0.00 42.00 4.85
3367 3934 1.405661 GGTACTAGGGTTGCTGTCTGC 60.406 57.143 0.00 0.00 43.25 4.26
3368 3935 1.207329 GGGTACTAGGGTTGCTGTCTG 59.793 57.143 0.00 0.00 0.00 3.51
3369 3936 1.569653 GGGTACTAGGGTTGCTGTCT 58.430 55.000 0.00 0.00 0.00 3.41
3370 3937 0.540454 GGGGTACTAGGGTTGCTGTC 59.460 60.000 0.00 0.00 0.00 3.51
3371 3938 0.178885 TGGGGTACTAGGGTTGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
3372 3939 0.988832 TTGGGGTACTAGGGTTGCTG 59.011 55.000 0.00 0.00 0.00 4.41
3373 3940 1.564348 CATTGGGGTACTAGGGTTGCT 59.436 52.381 0.00 0.00 0.00 3.91
3374 3941 2.022238 GCATTGGGGTACTAGGGTTGC 61.022 57.143 0.00 0.00 0.00 4.17
3375 3942 1.564348 AGCATTGGGGTACTAGGGTTG 59.436 52.381 0.00 0.00 0.00 3.77
3376 3943 1.844497 GAGCATTGGGGTACTAGGGTT 59.156 52.381 0.00 0.00 0.00 4.11
3377 3944 1.508256 GAGCATTGGGGTACTAGGGT 58.492 55.000 0.00 0.00 0.00 4.34
3378 3945 0.765510 GGAGCATTGGGGTACTAGGG 59.234 60.000 0.00 0.00 0.00 3.53
3379 3946 0.765510 GGGAGCATTGGGGTACTAGG 59.234 60.000 0.00 0.00 0.00 3.02
3380 3947 1.807814 AGGGAGCATTGGGGTACTAG 58.192 55.000 0.00 0.00 0.00 2.57
3381 3948 2.124411 GAAGGGAGCATTGGGGTACTA 58.876 52.381 0.00 0.00 0.00 1.82
3382 3949 0.919710 GAAGGGAGCATTGGGGTACT 59.080 55.000 0.00 0.00 0.00 2.73
3383 3950 0.106669 GGAAGGGAGCATTGGGGTAC 60.107 60.000 0.00 0.00 0.00 3.34
3384 3951 0.253630 AGGAAGGGAGCATTGGGGTA 60.254 55.000 0.00 0.00 0.00 3.69
3385 3952 1.149133 AAGGAAGGGAGCATTGGGGT 61.149 55.000 0.00 0.00 0.00 4.95
3386 3953 0.041684 AAAGGAAGGGAGCATTGGGG 59.958 55.000 0.00 0.00 0.00 4.96
3387 3954 1.478631 GAAAGGAAGGGAGCATTGGG 58.521 55.000 0.00 0.00 0.00 4.12
3388 3955 1.478631 GGAAAGGAAGGGAGCATTGG 58.521 55.000 0.00 0.00 0.00 3.16
3389 3956 1.006400 AGGGAAAGGAAGGGAGCATTG 59.994 52.381 0.00 0.00 0.00 2.82
3390 3957 1.286257 GAGGGAAAGGAAGGGAGCATT 59.714 52.381 0.00 0.00 0.00 3.56
3391 3958 0.922626 GAGGGAAAGGAAGGGAGCAT 59.077 55.000 0.00 0.00 0.00 3.79
3392 3959 1.208165 GGAGGGAAAGGAAGGGAGCA 61.208 60.000 0.00 0.00 0.00 4.26
3393 3960 1.610327 GGAGGGAAAGGAAGGGAGC 59.390 63.158 0.00 0.00 0.00 4.70
3394 3961 0.550147 TGGGAGGGAAAGGAAGGGAG 60.550 60.000 0.00 0.00 0.00 4.30
3395 3962 0.550147 CTGGGAGGGAAAGGAAGGGA 60.550 60.000 0.00 0.00 0.00 4.20
3396 3963 0.846870 ACTGGGAGGGAAAGGAAGGG 60.847 60.000 0.00 0.00 0.00 3.95
3397 3964 1.076438 AACTGGGAGGGAAAGGAAGG 58.924 55.000 0.00 0.00 0.00 3.46
3398 3965 2.980246 AAACTGGGAGGGAAAGGAAG 57.020 50.000 0.00 0.00 0.00 3.46
3399 3966 2.488347 CGAAAACTGGGAGGGAAAGGAA 60.488 50.000 0.00 0.00 0.00 3.36
3400 3967 1.073284 CGAAAACTGGGAGGGAAAGGA 59.927 52.381 0.00 0.00 0.00 3.36
3401 3968 1.534729 CGAAAACTGGGAGGGAAAGG 58.465 55.000 0.00 0.00 0.00 3.11
3402 3969 0.881796 GCGAAAACTGGGAGGGAAAG 59.118 55.000 0.00 0.00 0.00 2.62
3403 3970 0.476771 AGCGAAAACTGGGAGGGAAA 59.523 50.000 0.00 0.00 0.00 3.13
3404 3971 0.036306 GAGCGAAAACTGGGAGGGAA 59.964 55.000 0.00 0.00 0.00 3.97
3405 3972 1.677552 GAGCGAAAACTGGGAGGGA 59.322 57.895 0.00 0.00 0.00 4.20
3406 3973 1.377333 GGAGCGAAAACTGGGAGGG 60.377 63.158 0.00 0.00 0.00 4.30
3407 3974 0.391793 GAGGAGCGAAAACTGGGAGG 60.392 60.000 0.00 0.00 0.00 4.30
3408 3975 0.610687 AGAGGAGCGAAAACTGGGAG 59.389 55.000 0.00 0.00 0.00 4.30
3409 3976 0.608640 GAGAGGAGCGAAAACTGGGA 59.391 55.000 0.00 0.00 0.00 4.37
3410 3977 0.610687 AGAGAGGAGCGAAAACTGGG 59.389 55.000 0.00 0.00 0.00 4.45
3411 3978 1.548269 AGAGAGAGGAGCGAAAACTGG 59.452 52.381 0.00 0.00 0.00 4.00
3412 3979 2.730715 CGAGAGAGAGGAGCGAAAACTG 60.731 54.545 0.00 0.00 0.00 3.16
3413 3980 1.470890 CGAGAGAGAGGAGCGAAAACT 59.529 52.381 0.00 0.00 0.00 2.66
3414 3981 1.469308 TCGAGAGAGAGGAGCGAAAAC 59.531 52.381 0.00 0.00 34.84 2.43
3415 3982 1.822506 TCGAGAGAGAGGAGCGAAAA 58.177 50.000 0.00 0.00 34.84 2.29
3416 3983 3.553109 TCGAGAGAGAGGAGCGAAA 57.447 52.632 0.00 0.00 34.84 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.