Multiple sequence alignment - TraesCS1D01G046100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G046100 chr1D 100.000 6320 0 0 1 6320 25742700 25736381 0.000000e+00 11671
1 TraesCS1D01G046100 chr1D 100.000 660 0 0 6661 7320 25736040 25735381 0.000000e+00 1219
2 TraesCS1D01G046100 chr1B 93.403 4320 167 38 914 5181 41097580 41093327 0.000000e+00 6290
3 TraesCS1D01G046100 chr1B 96.290 1213 31 2 5122 6320 41093329 41092117 0.000000e+00 1978
4 TraesCS1D01G046100 chr1B 92.285 674 37 8 6661 7320 41092051 41091379 0.000000e+00 942
5 TraesCS1D01G046100 chr1B 89.362 188 15 2 14 197 41097825 41097639 1.590000e-56 231
6 TraesCS1D01G046100 chr1A 92.470 2656 135 24 891 3503 26971407 26968774 0.000000e+00 3736
7 TraesCS1D01G046100 chr1A 90.698 2849 148 35 3502 6320 26968698 26965937 0.000000e+00 3685
8 TraesCS1D01G046100 chr1A 94.570 663 32 3 6661 7320 26965871 26965210 0.000000e+00 1022
9 TraesCS1D01G046100 chr1A 84.942 259 32 7 1 256 26973378 26973124 9.420000e-64 255


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G046100 chr1D 25735381 25742700 7319 True 6445.00 11671 100.000 1 7320 2 chr1D.!!$R1 7319
1 TraesCS1D01G046100 chr1B 41091379 41097825 6446 True 2360.25 6290 92.835 14 7320 4 chr1B.!!$R1 7306
2 TraesCS1D01G046100 chr1A 26965210 26973378 8168 True 2174.50 3736 90.670 1 7320 4 chr1A.!!$R1 7319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 1771 0.322456 TGTCAACCCCAGCATGCTAC 60.322 55.000 22.19 13.68 31.97 3.58 F
1480 2685 0.252197 GTAAGGGCTCGGGTGTGATT 59.748 55.000 0.00 0.00 0.00 2.57 F
1481 2686 0.988832 TAAGGGCTCGGGTGTGATTT 59.011 50.000 0.00 0.00 0.00 2.17 F
1878 3114 1.750778 ACACAAACTCTGGGCACAAAG 59.249 47.619 0.00 0.00 0.00 2.77 F
2110 3346 2.636647 TGCACAGGTTCTGACAATGA 57.363 45.000 1.59 0.00 35.18 2.57 F
3869 5194 1.067354 CCCATTTGTCCTTTGCTCTGC 60.067 52.381 0.00 0.00 0.00 4.26 F
4758 6097 0.895100 TGGCAGTTCTGGGACATTGC 60.895 55.000 1.97 0.00 38.20 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 3436 0.539051 AGCCTCAGTGACACTATGCC 59.461 55.000 8.02 0.0 0.00 4.40 R
2733 3969 0.957395 AATGCCTTGAGGTGTCTGCG 60.957 55.000 0.00 0.0 37.57 5.18 R
3002 4238 2.621338 CGTGCATCTTCCACTGTGTAT 58.379 47.619 7.08 0.0 0.00 2.29 R
3859 5184 4.092383 GTGCATAAATTTGGCAGAGCAAAG 59.908 41.667 16.64 0.0 38.38 2.77 R
4069 5395 9.078990 CCATCTATGGTATTAGTCAGTAAGACA 57.921 37.037 0.49 0.0 45.13 3.41 R
5265 6662 1.707989 TGGGGTGTTAGATTCCAGCAA 59.292 47.619 0.00 0.0 0.00 3.91 R
6756 8183 0.606096 TCGGATCGAACAAAGCTGGA 59.394 50.000 0.00 0.0 31.06 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 167 3.691342 TGAAGACCCCCTGCGTCG 61.691 66.667 0.00 0.00 35.33 5.12
179 186 1.072116 TCGTCCGTATTTGCGTTCCG 61.072 55.000 0.00 0.00 0.00 4.30
187 194 0.608035 ATTTGCGTTCCGGTCCATGT 60.608 50.000 0.00 0.00 0.00 3.21
188 195 1.511318 TTTGCGTTCCGGTCCATGTG 61.511 55.000 0.00 0.00 0.00 3.21
237 249 2.559440 TGTTTTGCATTTGAGGTTGCC 58.441 42.857 0.00 0.00 38.08 4.52
238 250 2.170187 TGTTTTGCATTTGAGGTTGCCT 59.830 40.909 0.00 0.00 38.08 4.75
256 268 3.436700 CCTTTGGCACGAGTTCTTTTT 57.563 42.857 0.00 0.00 0.00 1.94
257 269 3.115554 CCTTTGGCACGAGTTCTTTTTG 58.884 45.455 0.00 0.00 0.00 2.44
258 270 3.428862 CCTTTGGCACGAGTTCTTTTTGT 60.429 43.478 0.00 0.00 0.00 2.83
259 271 3.414549 TTGGCACGAGTTCTTTTTGTC 57.585 42.857 0.00 0.00 0.00 3.18
260 272 2.360844 TGGCACGAGTTCTTTTTGTCA 58.639 42.857 0.00 0.00 0.00 3.58
261 273 2.096819 TGGCACGAGTTCTTTTTGTCAC 59.903 45.455 0.00 0.00 0.00 3.67
262 274 2.363220 GCACGAGTTCTTTTTGTCACG 58.637 47.619 0.00 0.00 0.00 4.35
263 275 2.849502 GCACGAGTTCTTTTTGTCACGG 60.850 50.000 0.00 0.00 0.00 4.94
264 276 2.605818 CACGAGTTCTTTTTGTCACGGA 59.394 45.455 0.00 0.00 0.00 4.69
265 277 3.247648 CACGAGTTCTTTTTGTCACGGAT 59.752 43.478 0.00 0.00 0.00 4.18
266 278 4.446385 CACGAGTTCTTTTTGTCACGGATA 59.554 41.667 0.00 0.00 0.00 2.59
267 279 5.120208 CACGAGTTCTTTTTGTCACGGATAT 59.880 40.000 0.00 0.00 0.00 1.63
268 280 5.120208 ACGAGTTCTTTTTGTCACGGATATG 59.880 40.000 0.00 0.00 0.00 1.78
269 281 5.347635 CGAGTTCTTTTTGTCACGGATATGA 59.652 40.000 0.00 0.00 0.00 2.15
270 282 6.036083 CGAGTTCTTTTTGTCACGGATATGAT 59.964 38.462 0.00 0.00 0.00 2.45
271 283 7.413000 CGAGTTCTTTTTGTCACGGATATGATT 60.413 37.037 0.00 0.00 0.00 2.57
272 284 8.786826 AGTTCTTTTTGTCACGGATATGATTA 57.213 30.769 0.00 0.00 0.00 1.75
273 285 8.883731 AGTTCTTTTTGTCACGGATATGATTAG 58.116 33.333 0.00 0.00 0.00 1.73
274 286 8.665685 GTTCTTTTTGTCACGGATATGATTAGT 58.334 33.333 0.00 0.00 0.00 2.24
275 287 8.196802 TCTTTTTGTCACGGATATGATTAGTG 57.803 34.615 0.00 0.00 0.00 2.74
276 288 7.822334 TCTTTTTGTCACGGATATGATTAGTGT 59.178 33.333 0.00 0.00 34.71 3.55
277 289 9.093970 CTTTTTGTCACGGATATGATTAGTGTA 57.906 33.333 0.00 0.00 34.71 2.90
278 290 9.607988 TTTTTGTCACGGATATGATTAGTGTAT 57.392 29.630 0.00 0.00 34.71 2.29
279 291 8.587952 TTTGTCACGGATATGATTAGTGTATG 57.412 34.615 0.00 0.00 34.71 2.39
280 292 7.284919 TGTCACGGATATGATTAGTGTATGT 57.715 36.000 0.00 0.00 34.71 2.29
281 293 8.398878 TGTCACGGATATGATTAGTGTATGTA 57.601 34.615 0.00 0.00 34.71 2.29
282 294 8.852135 TGTCACGGATATGATTAGTGTATGTAA 58.148 33.333 0.00 0.00 34.71 2.41
283 295 9.343103 GTCACGGATATGATTAGTGTATGTAAG 57.657 37.037 0.00 0.00 34.71 2.34
284 296 8.520351 TCACGGATATGATTAGTGTATGTAAGG 58.480 37.037 0.00 0.00 34.71 2.69
285 297 8.520351 CACGGATATGATTAGTGTATGTAAGGA 58.480 37.037 0.00 0.00 0.00 3.36
286 298 9.256228 ACGGATATGATTAGTGTATGTAAGGAT 57.744 33.333 0.00 0.00 0.00 3.24
298 310 7.980099 AGTGTATGTAAGGATAGTTGTGTTAGC 59.020 37.037 0.00 0.00 0.00 3.09
299 311 7.762615 GTGTATGTAAGGATAGTTGTGTTAGCA 59.237 37.037 0.00 0.00 0.00 3.49
300 312 8.482943 TGTATGTAAGGATAGTTGTGTTAGCAT 58.517 33.333 0.00 0.00 0.00 3.79
301 313 7.792374 ATGTAAGGATAGTTGTGTTAGCATG 57.208 36.000 0.00 0.00 0.00 4.06
302 314 6.112734 TGTAAGGATAGTTGTGTTAGCATGG 58.887 40.000 0.00 0.00 0.00 3.66
303 315 4.156455 AGGATAGTTGTGTTAGCATGGG 57.844 45.455 0.00 0.00 0.00 4.00
304 316 2.618709 GGATAGTTGTGTTAGCATGGGC 59.381 50.000 0.00 0.00 41.61 5.36
305 317 2.122783 TAGTTGTGTTAGCATGGGCC 57.877 50.000 0.00 0.00 42.56 5.80
306 318 0.960364 AGTTGTGTTAGCATGGGCCG 60.960 55.000 0.00 0.00 42.56 6.13
307 319 2.339556 TTGTGTTAGCATGGGCCGC 61.340 57.895 0.00 0.00 42.56 6.53
320 332 3.202001 GCCGCTATGCCGCTCAAA 61.202 61.111 0.00 0.00 30.75 2.69
323 335 1.643868 CCGCTATGCCGCTCAAAACA 61.644 55.000 0.00 0.00 0.00 2.83
327 339 2.159393 GCTATGCCGCTCAAAACATGAA 60.159 45.455 0.00 0.00 37.67 2.57
330 342 2.741612 TGCCGCTCAAAACATGAAAAG 58.258 42.857 0.00 0.00 37.67 2.27
331 343 2.360483 TGCCGCTCAAAACATGAAAAGA 59.640 40.909 0.00 0.00 37.67 2.52
332 344 3.005684 TGCCGCTCAAAACATGAAAAGAT 59.994 39.130 0.00 0.00 37.67 2.40
333 345 3.365820 GCCGCTCAAAACATGAAAAGATG 59.634 43.478 0.00 0.00 37.67 2.90
334 346 3.922240 CCGCTCAAAACATGAAAAGATGG 59.078 43.478 0.00 0.00 37.67 3.51
335 347 3.365820 CGCTCAAAACATGAAAAGATGGC 59.634 43.478 0.00 0.00 37.67 4.40
336 348 4.309099 GCTCAAAACATGAAAAGATGGCA 58.691 39.130 0.00 0.00 37.67 4.92
337 349 4.151157 GCTCAAAACATGAAAAGATGGCAC 59.849 41.667 0.00 0.00 37.67 5.01
340 352 6.111382 TCAAAACATGAAAAGATGGCACAAA 58.889 32.000 0.00 0.00 37.11 2.83
355 367 5.537188 TGGCACAAATTTTACATTCTGTCC 58.463 37.500 0.00 0.00 31.92 4.02
356 368 5.069648 TGGCACAAATTTTACATTCTGTCCA 59.930 36.000 0.00 0.00 31.92 4.02
357 369 5.988561 GGCACAAATTTTACATTCTGTCCAA 59.011 36.000 0.00 0.00 0.00 3.53
359 371 6.922957 GCACAAATTTTACATTCTGTCCAAGA 59.077 34.615 0.00 0.00 0.00 3.02
377 1353 0.727398 GAAGAAACGAGGGGAATGCG 59.273 55.000 0.00 0.00 0.00 4.73
380 1356 1.366854 GAAACGAGGGGAATGCGGAC 61.367 60.000 0.00 0.00 0.00 4.79
388 1364 2.774799 GGAATGCGGACATGTGGCC 61.775 63.158 1.15 0.00 40.84 5.36
401 1377 4.571919 ACATGTGGCCTTCATGATTTTTG 58.428 39.130 32.24 16.37 43.47 2.44
402 1378 4.040706 ACATGTGGCCTTCATGATTTTTGT 59.959 37.500 32.24 16.85 43.47 2.83
412 1388 7.553334 CCTTCATGATTTTTGTGAGATTCCAT 58.447 34.615 0.00 0.00 0.00 3.41
415 1391 6.664384 TCATGATTTTTGTGAGATTCCATGGA 59.336 34.615 11.44 11.44 32.28 3.41
422 1399 3.118992 TGTGAGATTCCATGGACTCTTCG 60.119 47.826 29.43 0.00 34.87 3.79
424 1401 2.102252 GAGATTCCATGGACTCTTCGCT 59.898 50.000 29.43 12.25 34.87 4.93
434 1411 2.263945 GACTCTTCGCTAAGCTTGACC 58.736 52.381 9.86 0.00 32.36 4.02
436 1413 0.885879 TCTTCGCTAAGCTTGACCGA 59.114 50.000 9.86 11.21 32.36 4.69
437 1414 1.135373 TCTTCGCTAAGCTTGACCGAG 60.135 52.381 9.86 0.00 32.36 4.63
444 1421 3.430374 GCTAAGCTTGACCGAGGAACATA 60.430 47.826 9.86 0.00 0.00 2.29
447 1424 2.501723 AGCTTGACCGAGGAACATACAT 59.498 45.455 0.00 0.00 0.00 2.29
448 1425 2.866762 GCTTGACCGAGGAACATACATC 59.133 50.000 0.00 0.00 0.00 3.06
449 1426 3.430929 GCTTGACCGAGGAACATACATCT 60.431 47.826 0.00 0.00 0.00 2.90
450 1427 4.363999 CTTGACCGAGGAACATACATCTC 58.636 47.826 0.00 0.00 0.00 2.75
451 1428 3.632333 TGACCGAGGAACATACATCTCT 58.368 45.455 0.00 0.00 0.00 3.10
453 1430 4.142160 TGACCGAGGAACATACATCTCTTG 60.142 45.833 0.00 0.00 0.00 3.02
454 1431 4.023980 ACCGAGGAACATACATCTCTTGA 58.976 43.478 0.00 0.00 0.00 3.02
455 1432 4.098654 ACCGAGGAACATACATCTCTTGAG 59.901 45.833 0.00 0.00 0.00 3.02
456 1433 4.098654 CCGAGGAACATACATCTCTTGAGT 59.901 45.833 0.00 0.00 0.00 3.41
457 1434 5.299531 CCGAGGAACATACATCTCTTGAGTA 59.700 44.000 0.00 0.00 0.00 2.59
458 1435 6.434596 CGAGGAACATACATCTCTTGAGTAG 58.565 44.000 0.00 0.00 0.00 2.57
459 1436 6.038825 CGAGGAACATACATCTCTTGAGTAGT 59.961 42.308 0.00 1.27 0.00 2.73
460 1437 7.341445 AGGAACATACATCTCTTGAGTAGTC 57.659 40.000 0.00 0.00 0.00 2.59
476 1453 4.337145 AGTAGTCGAGTTGGATCAAGTCT 58.663 43.478 0.00 0.00 40.47 3.24
482 1459 4.156190 TCGAGTTGGATCAAGTCTGAGTAC 59.844 45.833 12.00 0.00 40.47 2.73
483 1460 4.675671 CGAGTTGGATCAAGTCTGAGTACC 60.676 50.000 12.00 0.00 40.47 3.34
489 1466 3.844577 TCAAGTCTGAGTACCGTTAGC 57.155 47.619 0.00 0.00 0.00 3.09
490 1467 2.490903 TCAAGTCTGAGTACCGTTAGCC 59.509 50.000 0.00 0.00 0.00 3.93
493 1470 3.163467 AGTCTGAGTACCGTTAGCCTTT 58.837 45.455 0.00 0.00 0.00 3.11
494 1471 3.193056 AGTCTGAGTACCGTTAGCCTTTC 59.807 47.826 0.00 0.00 0.00 2.62
495 1472 3.193056 GTCTGAGTACCGTTAGCCTTTCT 59.807 47.826 0.00 0.00 0.00 2.52
497 1474 4.282703 TCTGAGTACCGTTAGCCTTTCTTT 59.717 41.667 0.00 0.00 0.00 2.52
498 1475 4.312443 TGAGTACCGTTAGCCTTTCTTTG 58.688 43.478 0.00 0.00 0.00 2.77
500 1477 2.943036 ACCGTTAGCCTTTCTTTGGA 57.057 45.000 0.00 0.00 0.00 3.53
501 1478 2.501261 ACCGTTAGCCTTTCTTTGGAC 58.499 47.619 0.00 0.00 0.00 4.02
502 1479 1.463444 CCGTTAGCCTTTCTTTGGACG 59.537 52.381 0.00 0.00 0.00 4.79
503 1480 2.140717 CGTTAGCCTTTCTTTGGACGT 58.859 47.619 0.00 0.00 0.00 4.34
504 1481 2.157085 CGTTAGCCTTTCTTTGGACGTC 59.843 50.000 7.13 7.13 0.00 4.34
505 1482 3.400255 GTTAGCCTTTCTTTGGACGTCT 58.600 45.455 16.46 0.00 0.00 4.18
506 1483 2.640316 AGCCTTTCTTTGGACGTCTT 57.360 45.000 16.46 0.00 0.00 3.01
507 1484 2.932261 AGCCTTTCTTTGGACGTCTTT 58.068 42.857 16.46 0.00 0.00 2.52
508 1485 4.081322 AGCCTTTCTTTGGACGTCTTTA 57.919 40.909 16.46 0.00 0.00 1.85
509 1486 4.652822 AGCCTTTCTTTGGACGTCTTTAT 58.347 39.130 16.46 0.00 0.00 1.40
510 1487 5.801380 AGCCTTTCTTTGGACGTCTTTATA 58.199 37.500 16.46 0.00 0.00 0.98
515 1492 9.556030 CCTTTCTTTGGACGTCTTTATATTTTC 57.444 33.333 16.46 0.00 0.00 2.29
542 1519 6.308675 TGTTAATCGTAAATGAAAACCTCGC 58.691 36.000 0.00 0.00 0.00 5.03
546 1523 5.171147 TCGTAAATGAAAACCTCGCAAAA 57.829 34.783 0.00 0.00 0.00 2.44
547 1524 5.764131 TCGTAAATGAAAACCTCGCAAAAT 58.236 33.333 0.00 0.00 0.00 1.82
548 1525 6.900189 TCGTAAATGAAAACCTCGCAAAATA 58.100 32.000 0.00 0.00 0.00 1.40
550 1527 7.535940 TCGTAAATGAAAACCTCGCAAAATAAG 59.464 33.333 0.00 0.00 0.00 1.73
551 1528 6.466308 AAATGAAAACCTCGCAAAATAAGC 57.534 33.333 0.00 0.00 0.00 3.09
552 1529 4.846779 TGAAAACCTCGCAAAATAAGCT 57.153 36.364 0.00 0.00 0.00 3.74
557 1534 4.846779 ACCTCGCAAAATAAGCTTTGAA 57.153 36.364 3.20 0.00 38.35 2.69
558 1535 5.391312 ACCTCGCAAAATAAGCTTTGAAT 57.609 34.783 3.20 0.00 38.35 2.57
559 1536 6.509418 ACCTCGCAAAATAAGCTTTGAATA 57.491 33.333 3.20 0.00 38.35 1.75
560 1537 7.100458 ACCTCGCAAAATAAGCTTTGAATAT 57.900 32.000 3.20 0.00 38.35 1.28
561 1538 7.547227 ACCTCGCAAAATAAGCTTTGAATATT 58.453 30.769 3.20 0.00 38.35 1.28
562 1539 8.682710 ACCTCGCAAAATAAGCTTTGAATATTA 58.317 29.630 3.20 0.00 38.35 0.98
563 1540 9.683069 CCTCGCAAAATAAGCTTTGAATATTAT 57.317 29.630 3.20 0.00 38.35 1.28
575 1552 9.998106 AGCTTTGAATATTATAACACTATCCGT 57.002 29.630 0.00 0.00 0.00 4.69
620 1597 8.609176 CACTATTATTGTTATAAACACAGGCGT 58.391 33.333 0.00 0.00 41.97 5.68
621 1598 8.823818 ACTATTATTGTTATAAACACAGGCGTC 58.176 33.333 0.00 0.00 41.97 5.19
622 1599 7.618502 ATTATTGTTATAAACACAGGCGTCA 57.381 32.000 0.00 0.00 41.97 4.35
625 1602 4.570930 TGTTATAAACACAGGCGTCATGA 58.429 39.130 0.00 0.00 36.25 3.07
626 1603 5.182487 TGTTATAAACACAGGCGTCATGAT 58.818 37.500 0.00 0.00 36.25 2.45
627 1604 5.645929 TGTTATAAACACAGGCGTCATGATT 59.354 36.000 0.00 0.00 36.25 2.57
628 1605 6.150307 TGTTATAAACACAGGCGTCATGATTT 59.850 34.615 0.00 0.00 36.25 2.17
630 1607 6.751514 ATAAACACAGGCGTCATGATTTTA 57.248 33.333 0.00 2.80 0.00 1.52
631 1608 5.643379 AAACACAGGCGTCATGATTTTAT 57.357 34.783 0.00 0.00 0.00 1.40
635 1612 8.445275 AACACAGGCGTCATGATTTTATATAA 57.555 30.769 0.00 0.00 0.00 0.98
636 1613 8.087982 ACACAGGCGTCATGATTTTATATAAG 57.912 34.615 0.00 0.00 0.00 1.73
637 1614 7.715249 ACACAGGCGTCATGATTTTATATAAGT 59.285 33.333 0.00 0.00 0.00 2.24
639 1616 8.774586 ACAGGCGTCATGATTTTATATAAGTTC 58.225 33.333 0.00 0.00 0.00 3.01
641 1618 9.209175 AGGCGTCATGATTTTATATAAGTTCTC 57.791 33.333 0.00 0.00 0.00 2.87
657 1639 4.390264 AGTTCTCTTTGTTAGACTTGGGC 58.610 43.478 0.00 0.00 0.00 5.36
661 1643 4.074970 CTCTTTGTTAGACTTGGGCATGT 58.925 43.478 0.00 0.00 0.00 3.21
663 1645 2.093306 TGTTAGACTTGGGCATGTCG 57.907 50.000 0.00 0.00 39.57 4.35
665 1647 2.000447 GTTAGACTTGGGCATGTCGTC 59.000 52.381 0.00 0.00 39.57 4.20
686 1668 2.977169 CGCCCAAAACACTACATTTTCG 59.023 45.455 0.00 0.00 0.00 3.46
687 1669 3.313690 GCCCAAAACACTACATTTTCGG 58.686 45.455 0.00 0.00 32.32 4.30
689 1671 4.542735 CCCAAAACACTACATTTTCGGTC 58.457 43.478 0.00 0.00 0.00 4.79
690 1672 4.036971 CCCAAAACACTACATTTTCGGTCA 59.963 41.667 0.00 0.00 0.00 4.02
692 1674 5.629020 CCAAAACACTACATTTTCGGTCATG 59.371 40.000 0.00 0.00 0.00 3.07
693 1675 6.434596 CAAAACACTACATTTTCGGTCATGA 58.565 36.000 0.00 0.00 0.00 3.07
696 1678 4.929808 ACACTACATTTTCGGTCATGACTC 59.070 41.667 24.50 13.90 0.00 3.36
697 1679 4.929211 CACTACATTTTCGGTCATGACTCA 59.071 41.667 24.50 9.30 0.00 3.41
705 1696 3.411446 TCGGTCATGACTCATTTTTGCT 58.589 40.909 24.50 0.00 0.00 3.91
706 1697 3.189080 TCGGTCATGACTCATTTTTGCTG 59.811 43.478 24.50 0.65 0.00 4.41
722 1713 6.631971 TTTTGCTGATGAACATGACAAGTA 57.368 33.333 0.00 0.00 0.00 2.24
730 1721 6.883756 TGATGAACATGACAAGTATTTAGGCA 59.116 34.615 0.00 0.00 0.00 4.75
731 1722 7.557358 TGATGAACATGACAAGTATTTAGGCAT 59.443 33.333 0.00 0.00 0.00 4.40
738 1729 7.637631 TGACAAGTATTTAGGCATTGCATTA 57.362 32.000 11.39 0.00 0.00 1.90
739 1730 8.236585 TGACAAGTATTTAGGCATTGCATTAT 57.763 30.769 11.39 3.67 0.00 1.28
751 1742 6.219302 GCATTGCATTATGCCATCTTTTAC 57.781 37.500 15.06 0.00 44.23 2.01
752 1743 5.754406 GCATTGCATTATGCCATCTTTTACA 59.246 36.000 15.06 0.00 44.23 2.41
753 1744 6.292488 GCATTGCATTATGCCATCTTTTACAC 60.292 38.462 15.06 0.00 44.23 2.90
754 1745 5.261209 TGCATTATGCCATCTTTTACACC 57.739 39.130 15.06 0.00 44.23 4.16
756 1747 5.186603 TGCATTATGCCATCTTTTACACCAA 59.813 36.000 15.06 0.00 44.23 3.67
757 1748 6.127111 TGCATTATGCCATCTTTTACACCAAT 60.127 34.615 15.06 0.00 44.23 3.16
758 1749 7.069208 TGCATTATGCCATCTTTTACACCAATA 59.931 33.333 15.06 0.00 44.23 1.90
759 1750 8.090214 GCATTATGCCATCTTTTACACCAATAT 58.910 33.333 5.80 0.00 37.42 1.28
763 1754 8.710749 ATGCCATCTTTTACACCAATATATGT 57.289 30.769 0.00 0.00 0.00 2.29
764 1755 8.165239 TGCCATCTTTTACACCAATATATGTC 57.835 34.615 0.00 0.00 0.00 3.06
772 1763 4.792068 ACACCAATATATGTCAACCCCAG 58.208 43.478 0.00 0.00 0.00 4.45
775 1766 4.140947 ACCAATATATGTCAACCCCAGCAT 60.141 41.667 0.00 0.00 0.00 3.79
780 1771 0.322456 TGTCAACCCCAGCATGCTAC 60.322 55.000 22.19 13.68 31.97 3.58
786 1777 0.947244 CCCCAGCATGCTACGAATTC 59.053 55.000 22.19 0.00 31.97 2.17
799 1790 5.095490 GCTACGAATTCCCATTCACAAAAG 58.905 41.667 0.00 0.00 39.14 2.27
818 1810 7.101993 CAAAAGTCAGCTCATTTTGTTCATC 57.898 36.000 14.90 0.00 38.50 2.92
820 1812 3.760684 AGTCAGCTCATTTTGTTCATCCC 59.239 43.478 0.00 0.00 0.00 3.85
824 1816 4.019174 AGCTCATTTTGTTCATCCCGAAT 58.981 39.130 0.00 0.00 35.63 3.34
826 1818 4.107622 CTCATTTTGTTCATCCCGAATGC 58.892 43.478 0.00 0.00 35.63 3.56
837 1829 3.915437 TCCCGAATGCAAGAAGTTTTC 57.085 42.857 0.00 0.00 0.00 2.29
855 1848 5.188359 AGTTTTCCCCAAATGAAGATCATGG 59.812 40.000 0.00 0.00 37.15 3.66
857 1850 4.174704 TCCCCAAATGAAGATCATGGAG 57.825 45.455 0.00 0.00 37.15 3.86
876 1869 8.470002 TCATGGAGGATGATAATACTACAATCG 58.530 37.037 0.00 0.00 36.06 3.34
877 1870 7.776618 TGGAGGATGATAATACTACAATCGT 57.223 36.000 0.00 0.00 0.00 3.73
878 1871 8.873186 TGGAGGATGATAATACTACAATCGTA 57.127 34.615 0.00 0.00 0.00 3.43
879 1872 9.304335 TGGAGGATGATAATACTACAATCGTAA 57.696 33.333 0.00 0.00 0.00 3.18
898 2088 5.862323 TCGTAAACAAATAGAGAGTGACTGC 59.138 40.000 0.00 0.00 0.00 4.40
903 2093 4.394300 ACAAATAGAGAGTGACTGCATTGC 59.606 41.667 0.46 0.46 0.00 3.56
909 2099 5.922053 AGAGAGTGACTGCATTGCAATATA 58.078 37.500 12.53 3.11 38.41 0.86
910 2100 6.351711 AGAGAGTGACTGCATTGCAATATAA 58.648 36.000 12.53 0.00 38.41 0.98
916 2106 5.067674 TGACTGCATTGCAATATAAGGAACC 59.932 40.000 12.53 2.96 38.41 3.62
933 2123 1.852633 ACCATTGAAGGGGCTAAAGC 58.147 50.000 0.00 0.00 41.14 3.51
1029 2221 0.672342 ACCCGAGAATTATCCCGACG 59.328 55.000 0.00 0.00 0.00 5.12
1033 2225 3.554337 CCCGAGAATTATCCCGACGAAAT 60.554 47.826 0.00 0.00 0.00 2.17
1034 2226 3.673809 CCGAGAATTATCCCGACGAAATC 59.326 47.826 0.00 0.00 0.00 2.17
1406 2610 1.873698 GGTACGGCTGTTCTTGTTCA 58.126 50.000 1.99 0.00 0.00 3.18
1428 2632 4.996434 GTGCCTGCCACTGCGAGT 62.996 66.667 0.00 0.00 41.35 4.18
1447 2651 3.848726 AGTTTTGGTTGTCACTTGCTTG 58.151 40.909 0.00 0.00 0.00 4.01
1448 2652 3.258123 AGTTTTGGTTGTCACTTGCTTGT 59.742 39.130 0.00 0.00 0.00 3.16
1449 2653 3.951775 TTTGGTTGTCACTTGCTTGTT 57.048 38.095 0.00 0.00 0.00 2.83
1450 2654 2.937469 TGGTTGTCACTTGCTTGTTG 57.063 45.000 0.00 0.00 0.00 3.33
1451 2655 1.135141 TGGTTGTCACTTGCTTGTTGC 60.135 47.619 0.00 0.00 43.25 4.17
1452 2656 1.134946 GGTTGTCACTTGCTTGTTGCT 59.865 47.619 0.00 0.00 43.37 3.91
1453 2657 2.417243 GGTTGTCACTTGCTTGTTGCTT 60.417 45.455 0.00 0.00 43.37 3.91
1469 2674 0.608308 GCTTCGTTTGGGTAAGGGCT 60.608 55.000 0.00 0.00 0.00 5.19
1472 2677 1.743995 CGTTTGGGTAAGGGCTCGG 60.744 63.158 0.00 0.00 0.00 4.63
1474 2679 1.848895 TTTGGGTAAGGGCTCGGGT 60.849 57.895 0.00 0.00 0.00 5.28
1479 2684 1.623542 GGTAAGGGCTCGGGTGTGAT 61.624 60.000 0.00 0.00 0.00 3.06
1480 2685 0.252197 GTAAGGGCTCGGGTGTGATT 59.748 55.000 0.00 0.00 0.00 2.57
1481 2686 0.988832 TAAGGGCTCGGGTGTGATTT 59.011 50.000 0.00 0.00 0.00 2.17
1623 2828 6.410540 GTGTTTCTTCTCTTCCACCAGATAT 58.589 40.000 0.00 0.00 0.00 1.63
1657 2862 5.603596 AGTGATTTTGCTGAAATGCTTTGA 58.396 33.333 3.81 0.00 38.06 2.69
1666 2871 6.518493 TGCTGAAATGCTTTGAGAGAATTTT 58.482 32.000 0.00 0.00 42.58 1.82
1686 2891 2.203126 CGAAGGCAGCTCCATCCC 60.203 66.667 5.21 0.00 37.29 3.85
1723 2928 4.801330 TGTTAGTGAGTAGATGTGGTGG 57.199 45.455 0.00 0.00 0.00 4.61
1793 3024 4.571984 GGATTTGGGCTTGCACATATTTTC 59.428 41.667 0.00 0.00 0.00 2.29
1794 3025 4.888326 TTTGGGCTTGCACATATTTTCT 57.112 36.364 0.00 0.00 0.00 2.52
1878 3114 1.750778 ACACAAACTCTGGGCACAAAG 59.249 47.619 0.00 0.00 0.00 2.77
1993 3229 4.396166 GGTCAATGGTTGTGGATCACTTAG 59.604 45.833 0.00 0.00 35.11 2.18
2109 3345 3.079578 AGATGCACAGGTTCTGACAATG 58.920 45.455 1.59 0.00 35.18 2.82
2110 3346 2.636647 TGCACAGGTTCTGACAATGA 57.363 45.000 1.59 0.00 35.18 2.57
2118 3354 7.599998 GCACAGGTTCTGACAATGAAAAATTAT 59.400 33.333 1.59 0.00 35.18 1.28
2200 3436 5.674525 TCCACCTTTCTTCTATATGCACAG 58.325 41.667 0.00 0.00 0.00 3.66
2249 3485 5.647589 TGTCTGTCTTTGTAGGCTAATACG 58.352 41.667 0.00 0.00 0.00 3.06
2355 3591 6.487299 TTTTGTTAATAACCCTGCCACTTT 57.513 33.333 0.18 0.00 0.00 2.66
2361 3597 2.675658 AACCCTGCCACTTTGTACAT 57.324 45.000 0.00 0.00 0.00 2.29
2414 3650 7.912778 AGAGCTTATAGAATCTCCTTTGTCT 57.087 36.000 0.00 0.00 29.57 3.41
2437 3673 7.388224 GTCTGATCATTGATCATAAGCACTCAT 59.612 37.037 25.49 0.00 46.16 2.90
2667 3903 6.467677 TCTCAAGGCTTATGCTAATATGACC 58.532 40.000 0.00 0.00 39.59 4.02
2678 3914 4.464951 TGCTAATATGACCGGGTAATCGAT 59.535 41.667 6.32 0.00 0.00 3.59
2733 3969 4.953579 AGTCTTCCCTCTGTCACTTCTATC 59.046 45.833 0.00 0.00 0.00 2.08
3002 4238 5.296780 GGGTTCATATTCAAAATCAGAGCGA 59.703 40.000 0.00 0.00 0.00 4.93
3041 4277 5.010213 TGCACGCTATATTGTCAGGTATGTA 59.990 40.000 0.00 0.00 0.00 2.29
3219 4464 8.031277 AGTTGATGAAATTTCTTGGCATCTTAC 58.969 33.333 18.64 13.74 37.01 2.34
3271 4517 9.247861 AGAAATACAGATATGCAAAGGAAAGTT 57.752 29.630 0.00 0.00 0.00 2.66
3272 4518 9.294030 GAAATACAGATATGCAAAGGAAAGTTG 57.706 33.333 0.00 0.00 0.00 3.16
3369 4615 5.284079 CACATGTTCCTTAATGCTTATGCC 58.716 41.667 0.00 0.00 38.71 4.40
3721 5046 6.765036 ACCTGATTCAGTAAGTAGATGCATTG 59.235 38.462 12.54 0.00 0.00 2.82
3809 5134 6.743575 AGCAACCATTACAGATTAAGTGTC 57.256 37.500 0.00 0.00 0.00 3.67
3859 5184 6.657541 TGAACTTATGAAGTACCCATTTGTCC 59.342 38.462 4.02 0.00 41.91 4.02
3869 5194 1.067354 CCCATTTGTCCTTTGCTCTGC 60.067 52.381 0.00 0.00 0.00 4.26
4167 5493 1.230324 GCGTAATTCCTCCTGGCATC 58.770 55.000 0.00 0.00 0.00 3.91
4175 5502 1.077212 CTCCTGGCATCACCCCAAG 60.077 63.158 0.00 0.00 37.83 3.61
4255 5585 4.858692 CCCTTGCGATTTATGTTTGAACTG 59.141 41.667 0.00 0.00 0.00 3.16
4327 5666 5.076873 ACGGGCAAGGCATATTATACATTT 58.923 37.500 0.00 0.00 0.00 2.32
4328 5667 6.242396 ACGGGCAAGGCATATTATACATTTA 58.758 36.000 0.00 0.00 0.00 1.40
4409 5748 3.007940 TGGTCCTTCACAGGTGAGTATTG 59.992 47.826 2.01 0.00 41.69 1.90
4627 5966 5.997746 GCAGGCTATATTGACCACTGATAAA 59.002 40.000 0.00 0.00 0.00 1.40
4758 6097 0.895100 TGGCAGTTCTGGGACATTGC 60.895 55.000 1.97 0.00 38.20 3.56
4897 6237 1.552337 TGGTCTGCTTCTCTTGCCTAG 59.448 52.381 0.00 0.00 0.00 3.02
5026 6366 5.940192 TGTGTGCTTGTACCAAATAGAAG 57.060 39.130 0.00 0.00 37.25 2.85
5265 6662 0.904649 TTCTGATGTCCATCGCAGGT 59.095 50.000 3.04 0.00 40.63 4.00
5275 6672 0.379669 CATCGCAGGTTGCTGGAATC 59.620 55.000 0.00 0.00 42.25 2.52
5517 6914 3.133901 TCTGCGCATTACATCCTTCCTTA 59.866 43.478 12.24 0.00 0.00 2.69
5655 7078 8.518430 TGTTGTGCATAACTGGTAATTCATAT 57.482 30.769 24.26 0.00 0.00 1.78
5698 7121 0.729140 GTTTGCGGCAACCATCTTCG 60.729 55.000 16.15 0.00 0.00 3.79
5727 7150 4.853196 CCATTATCCAAGATAATTTGCGCG 59.147 41.667 0.00 0.00 0.00 6.86
5840 7263 5.305644 AGGTGTATGGTACCTTGATCATCTC 59.694 44.000 14.36 3.91 46.13 2.75
5870 7293 1.765904 TGGGAACAAGTCTACACTGCA 59.234 47.619 0.00 0.00 37.44 4.41
5895 7318 2.353704 CCACTTGCAGGAATAGACGACA 60.354 50.000 1.40 0.00 0.00 4.35
5933 7356 1.697982 GTACTGGGTGGAGAGGTTTGT 59.302 52.381 0.00 0.00 0.00 2.83
5960 7383 1.228583 TGAGACGGCAGACACCTCT 60.229 57.895 0.00 0.00 0.00 3.69
5966 7389 0.036952 CGGCAGACACCTCTGATGTT 60.037 55.000 1.79 0.00 46.32 2.71
6095 7518 9.422196 GAACTTATGTGTCGCTATCAAAATAAC 57.578 33.333 0.00 0.00 0.00 1.89
6164 7587 2.319890 AAACAACCGTCCTGGCTCGT 62.320 55.000 9.42 0.00 43.94 4.18
6197 7620 0.745845 GATGCCTGCTGAATCACCGT 60.746 55.000 0.00 0.00 0.00 4.83
6206 7629 1.153449 GAATCACCGTGGGATCGCA 60.153 57.895 8.63 8.63 0.00 5.10
6701 8125 2.328992 TACCCCATACACCTGTGACA 57.671 50.000 3.94 0.00 0.00 3.58
6714 8138 3.826729 ACCTGTGACAAATAAAAGCCCTC 59.173 43.478 0.00 0.00 0.00 4.30
6722 8146 5.016831 ACAAATAAAAGCCCTCGATCCTTT 58.983 37.500 0.00 0.00 0.00 3.11
6756 8183 3.824443 CACCCCGAAACTCCAATAAAACT 59.176 43.478 0.00 0.00 0.00 2.66
6766 8193 5.140454 ACTCCAATAAAACTCCAGCTTTGT 58.860 37.500 0.00 0.00 0.00 2.83
6769 8196 4.917415 CCAATAAAACTCCAGCTTTGTTCG 59.083 41.667 0.00 0.00 0.00 3.95
6778 8205 0.320374 AGCTTTGTTCGATCCGACCA 59.680 50.000 0.00 0.00 34.89 4.02
6915 8344 4.767409 GGCTCCTTTGAACTGGTAAAAGAT 59.233 41.667 4.01 0.00 33.63 2.40
6918 8347 6.655425 GCTCCTTTGAACTGGTAAAAGATAGT 59.345 38.462 4.01 0.00 33.63 2.12
6919 8348 7.148390 GCTCCTTTGAACTGGTAAAAGATAGTC 60.148 40.741 4.01 0.00 33.63 2.59
7173 8608 1.104577 TTTCCGGCCATTTATCGCCC 61.105 55.000 2.24 0.00 42.53 6.13
7278 8718 3.057736 GCCATATGTATCTGCTGCCTTTG 60.058 47.826 1.24 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 186 2.548920 GCCATAGAGCTACACATGGACC 60.549 54.545 15.83 0.00 40.37 4.46
187 194 2.694397 AGGAATGGCCATAGAGCTACA 58.306 47.619 21.15 0.00 40.02 2.74
188 195 4.223923 ACATAGGAATGGCCATAGAGCTAC 59.776 45.833 21.15 3.03 40.02 3.58
217 229 2.170187 AGGCAACCTCAAATGCAAAACA 59.830 40.909 0.00 0.00 44.32 2.83
237 249 3.769536 ACAAAAAGAACTCGTGCCAAAG 58.230 40.909 0.00 0.00 0.00 2.77
238 250 3.191581 TGACAAAAAGAACTCGTGCCAAA 59.808 39.130 0.00 0.00 0.00 3.28
245 257 5.347635 TCATATCCGTGACAAAAAGAACTCG 59.652 40.000 0.00 0.00 0.00 4.18
249 261 8.664798 CACTAATCATATCCGTGACAAAAAGAA 58.335 33.333 0.00 0.00 0.00 2.52
250 262 7.822334 ACACTAATCATATCCGTGACAAAAAGA 59.178 33.333 0.00 0.00 0.00 2.52
251 263 7.974675 ACACTAATCATATCCGTGACAAAAAG 58.025 34.615 0.00 0.00 0.00 2.27
254 266 8.201464 ACATACACTAATCATATCCGTGACAAA 58.799 33.333 0.00 0.00 0.00 2.83
255 267 7.722363 ACATACACTAATCATATCCGTGACAA 58.278 34.615 0.00 0.00 0.00 3.18
256 268 7.284919 ACATACACTAATCATATCCGTGACA 57.715 36.000 0.00 0.00 0.00 3.58
257 269 9.343103 CTTACATACACTAATCATATCCGTGAC 57.657 37.037 0.00 0.00 0.00 3.67
258 270 8.520351 CCTTACATACACTAATCATATCCGTGA 58.480 37.037 0.00 0.00 0.00 4.35
259 271 8.520351 TCCTTACATACACTAATCATATCCGTG 58.480 37.037 0.00 0.00 0.00 4.94
260 272 8.645814 TCCTTACATACACTAATCATATCCGT 57.354 34.615 0.00 0.00 0.00 4.69
272 284 7.980099 GCTAACACAACTATCCTTACATACACT 59.020 37.037 0.00 0.00 0.00 3.55
273 285 7.762615 TGCTAACACAACTATCCTTACATACAC 59.237 37.037 0.00 0.00 0.00 2.90
274 286 7.842982 TGCTAACACAACTATCCTTACATACA 58.157 34.615 0.00 0.00 0.00 2.29
275 287 8.765219 CATGCTAACACAACTATCCTTACATAC 58.235 37.037 0.00 0.00 0.00 2.39
276 288 7.931407 CCATGCTAACACAACTATCCTTACATA 59.069 37.037 0.00 0.00 0.00 2.29
277 289 6.767902 CCATGCTAACACAACTATCCTTACAT 59.232 38.462 0.00 0.00 0.00 2.29
278 290 6.112734 CCATGCTAACACAACTATCCTTACA 58.887 40.000 0.00 0.00 0.00 2.41
279 291 5.527582 CCCATGCTAACACAACTATCCTTAC 59.472 44.000 0.00 0.00 0.00 2.34
280 292 5.680619 CCCATGCTAACACAACTATCCTTA 58.319 41.667 0.00 0.00 0.00 2.69
281 293 4.526970 CCCATGCTAACACAACTATCCTT 58.473 43.478 0.00 0.00 0.00 3.36
282 294 3.685550 GCCCATGCTAACACAACTATCCT 60.686 47.826 0.00 0.00 33.53 3.24
283 295 2.618709 GCCCATGCTAACACAACTATCC 59.381 50.000 0.00 0.00 33.53 2.59
284 296 2.618709 GGCCCATGCTAACACAACTATC 59.381 50.000 0.00 0.00 37.74 2.08
285 297 2.654863 GGCCCATGCTAACACAACTAT 58.345 47.619 0.00 0.00 37.74 2.12
286 298 1.677518 CGGCCCATGCTAACACAACTA 60.678 52.381 0.00 0.00 37.74 2.24
287 299 0.960364 CGGCCCATGCTAACACAACT 60.960 55.000 0.00 0.00 37.74 3.16
288 300 1.506262 CGGCCCATGCTAACACAAC 59.494 57.895 0.00 0.00 37.74 3.32
289 301 2.339556 GCGGCCCATGCTAACACAA 61.340 57.895 0.00 0.00 37.74 3.33
290 302 1.904990 TAGCGGCCCATGCTAACACA 61.905 55.000 8.24 0.00 41.70 3.72
291 303 1.153249 TAGCGGCCCATGCTAACAC 60.153 57.895 8.24 0.00 41.70 3.32
292 304 3.314951 TAGCGGCCCATGCTAACA 58.685 55.556 8.24 0.00 41.70 2.41
304 316 1.062525 GTTTTGAGCGGCATAGCGG 59.937 57.895 1.45 0.00 43.00 5.52
305 317 0.378257 ATGTTTTGAGCGGCATAGCG 59.622 50.000 1.45 0.00 43.00 4.26
306 318 1.401552 TCATGTTTTGAGCGGCATAGC 59.598 47.619 1.45 0.00 37.41 2.97
307 319 3.763097 TTCATGTTTTGAGCGGCATAG 57.237 42.857 1.45 0.00 35.27 2.23
317 329 5.987777 TTGTGCCATCTTTTCATGTTTTG 57.012 34.783 0.00 0.00 0.00 2.44
318 330 7.571080 AATTTGTGCCATCTTTTCATGTTTT 57.429 28.000 0.00 0.00 0.00 2.43
320 332 7.571080 AAAATTTGTGCCATCTTTTCATGTT 57.429 28.000 0.00 0.00 0.00 2.71
323 335 8.851541 ATGTAAAATTTGTGCCATCTTTTCAT 57.148 26.923 0.00 0.00 0.00 2.57
327 339 8.314143 CAGAATGTAAAATTTGTGCCATCTTT 57.686 30.769 0.00 0.00 0.00 2.52
347 359 4.319177 CCTCGTTTCTTCTTGGACAGAAT 58.681 43.478 0.00 0.00 40.95 2.40
348 360 3.494398 CCCTCGTTTCTTCTTGGACAGAA 60.494 47.826 0.00 0.00 39.39 3.02
349 361 2.037251 CCCTCGTTTCTTCTTGGACAGA 59.963 50.000 0.00 0.00 0.00 3.41
350 362 2.417719 CCCTCGTTTCTTCTTGGACAG 58.582 52.381 0.00 0.00 0.00 3.51
352 364 1.346722 TCCCCTCGTTTCTTCTTGGAC 59.653 52.381 0.00 0.00 0.00 4.02
353 365 1.724545 TCCCCTCGTTTCTTCTTGGA 58.275 50.000 0.00 0.00 0.00 3.53
355 367 2.162408 GCATTCCCCTCGTTTCTTCTTG 59.838 50.000 0.00 0.00 0.00 3.02
356 368 2.437413 GCATTCCCCTCGTTTCTTCTT 58.563 47.619 0.00 0.00 0.00 2.52
357 369 1.676014 CGCATTCCCCTCGTTTCTTCT 60.676 52.381 0.00 0.00 0.00 2.85
359 371 0.676782 CCGCATTCCCCTCGTTTCTT 60.677 55.000 0.00 0.00 0.00 2.52
360 372 1.078426 CCGCATTCCCCTCGTTTCT 60.078 57.895 0.00 0.00 0.00 2.52
362 374 1.376812 GTCCGCATTCCCCTCGTTT 60.377 57.895 0.00 0.00 0.00 3.60
363 375 1.910580 ATGTCCGCATTCCCCTCGTT 61.911 55.000 0.00 0.00 29.54 3.85
364 376 2.367202 ATGTCCGCATTCCCCTCGT 61.367 57.895 0.00 0.00 29.54 4.18
366 378 1.097547 CACATGTCCGCATTCCCCTC 61.098 60.000 0.00 0.00 31.99 4.30
367 379 1.077501 CACATGTCCGCATTCCCCT 60.078 57.895 0.00 0.00 31.99 4.79
368 380 2.120909 CCACATGTCCGCATTCCCC 61.121 63.158 0.00 0.00 31.99 4.81
377 1353 2.062971 ATCATGAAGGCCACATGTCC 57.937 50.000 28.99 0.00 43.56 4.02
380 1356 4.390603 CACAAAAATCATGAAGGCCACATG 59.609 41.667 26.51 26.51 44.20 3.21
388 1364 7.491372 CCATGGAATCTCACAAAAATCATGAAG 59.509 37.037 5.56 0.00 33.46 3.02
401 1377 3.452474 CGAAGAGTCCATGGAATCTCAC 58.548 50.000 37.33 30.66 46.92 3.51
402 1378 2.159043 GCGAAGAGTCCATGGAATCTCA 60.159 50.000 37.33 4.70 46.92 3.27
412 1388 1.893137 TCAAGCTTAGCGAAGAGTCCA 59.107 47.619 11.09 0.00 34.25 4.02
415 1391 1.402984 CGGTCAAGCTTAGCGAAGAGT 60.403 52.381 11.09 0.00 40.11 3.24
422 1399 1.337823 TGTTCCTCGGTCAAGCTTAGC 60.338 52.381 0.00 0.00 0.00 3.09
424 1401 3.512329 TGTATGTTCCTCGGTCAAGCTTA 59.488 43.478 0.00 0.00 0.00 3.09
434 1411 5.255710 ACTCAAGAGATGTATGTTCCTCG 57.744 43.478 3.73 0.00 0.00 4.63
436 1413 6.038825 CGACTACTCAAGAGATGTATGTTCCT 59.961 42.308 3.73 0.00 0.00 3.36
437 1414 6.038382 TCGACTACTCAAGAGATGTATGTTCC 59.962 42.308 3.73 0.00 0.00 3.62
444 1421 4.156922 CCAACTCGACTACTCAAGAGATGT 59.843 45.833 3.73 2.12 33.49 3.06
447 1424 4.017177 TCCAACTCGACTACTCAAGAGA 57.983 45.455 3.73 0.00 34.98 3.10
448 1425 4.396478 TGATCCAACTCGACTACTCAAGAG 59.604 45.833 0.00 0.00 36.83 2.85
449 1426 4.332828 TGATCCAACTCGACTACTCAAGA 58.667 43.478 0.00 0.00 0.00 3.02
450 1427 4.703645 TGATCCAACTCGACTACTCAAG 57.296 45.455 0.00 0.00 0.00 3.02
451 1428 4.523173 ACTTGATCCAACTCGACTACTCAA 59.477 41.667 0.00 0.00 0.00 3.02
453 1430 4.396790 AGACTTGATCCAACTCGACTACTC 59.603 45.833 0.00 0.00 0.00 2.59
454 1431 4.156922 CAGACTTGATCCAACTCGACTACT 59.843 45.833 0.00 0.00 0.00 2.57
455 1432 4.156190 TCAGACTTGATCCAACTCGACTAC 59.844 45.833 0.00 0.00 0.00 2.73
456 1433 4.332828 TCAGACTTGATCCAACTCGACTA 58.667 43.478 0.00 0.00 0.00 2.59
457 1434 3.157881 TCAGACTTGATCCAACTCGACT 58.842 45.455 0.00 0.00 0.00 4.18
458 1435 3.057174 ACTCAGACTTGATCCAACTCGAC 60.057 47.826 0.00 0.00 31.68 4.20
459 1436 3.157881 ACTCAGACTTGATCCAACTCGA 58.842 45.455 0.00 0.00 31.68 4.04
460 1437 3.584406 ACTCAGACTTGATCCAACTCG 57.416 47.619 0.00 0.00 31.68 4.18
476 1453 4.312443 CAAAGAAAGGCTAACGGTACTCA 58.688 43.478 0.00 0.00 0.00 3.41
482 1459 1.463444 CGTCCAAAGAAAGGCTAACGG 59.537 52.381 0.00 0.00 0.00 4.44
483 1460 2.140717 ACGTCCAAAGAAAGGCTAACG 58.859 47.619 0.00 0.00 35.20 3.18
489 1466 9.556030 GAAAATATAAAGACGTCCAAAGAAAGG 57.444 33.333 13.01 0.00 0.00 3.11
494 1471 9.840427 ACATTGAAAATATAAAGACGTCCAAAG 57.160 29.630 13.01 4.91 0.00 2.77
515 1492 8.785101 CGAGGTTTTCATTTACGATTAACATTG 58.215 33.333 0.00 0.00 0.00 2.82
516 1493 7.483691 GCGAGGTTTTCATTTACGATTAACATT 59.516 33.333 0.00 0.00 0.00 2.71
518 1495 6.073167 TGCGAGGTTTTCATTTACGATTAACA 60.073 34.615 0.00 0.00 0.00 2.41
526 1503 7.328493 AGCTTATTTTGCGAGGTTTTCATTTAC 59.672 33.333 0.00 0.00 35.28 2.01
537 1514 7.992180 AATATTCAAAGCTTATTTTGCGAGG 57.008 32.000 0.00 0.00 37.83 4.63
596 1573 8.822855 TGACGCCTGTGTTTATAACAATAATAG 58.177 33.333 0.00 0.00 44.16 1.73
602 1579 4.998033 TCATGACGCCTGTGTTTATAACAA 59.002 37.500 0.00 0.00 44.16 2.83
604 1581 5.734855 ATCATGACGCCTGTGTTTATAAC 57.265 39.130 0.00 0.00 0.00 1.89
610 1587 6.942532 ATATAAAATCATGACGCCTGTGTT 57.057 33.333 0.00 0.00 0.00 3.32
616 1593 9.209175 AGAGAACTTATATAAAATCATGACGCC 57.791 33.333 0.00 0.00 0.00 5.68
630 1607 9.892130 CCCAAGTCTAACAAAGAGAACTTATAT 57.108 33.333 0.00 0.00 33.88 0.86
631 1608 7.822822 GCCCAAGTCTAACAAAGAGAACTTATA 59.177 37.037 0.00 0.00 33.88 0.98
635 1612 4.141482 TGCCCAAGTCTAACAAAGAGAACT 60.141 41.667 0.00 0.00 33.88 3.01
636 1613 4.134563 TGCCCAAGTCTAACAAAGAGAAC 58.865 43.478 0.00 0.00 33.88 3.01
637 1614 4.431416 TGCCCAAGTCTAACAAAGAGAA 57.569 40.909 0.00 0.00 33.88 2.87
639 1616 4.074970 ACATGCCCAAGTCTAACAAAGAG 58.925 43.478 0.00 0.00 33.88 2.85
641 1618 3.120199 CGACATGCCCAAGTCTAACAAAG 60.120 47.826 0.00 0.00 32.68 2.77
645 1622 2.000447 GACGACATGCCCAAGTCTAAC 59.000 52.381 0.00 0.00 32.68 2.34
648 1625 1.079819 CGACGACATGCCCAAGTCT 60.080 57.895 0.00 0.00 32.68 3.24
650 1627 2.742372 GCGACGACATGCCCAAGT 60.742 61.111 0.00 0.00 0.00 3.16
657 1639 0.385473 GTGTTTTGGGCGACGACATG 60.385 55.000 1.63 0.00 0.00 3.21
661 1643 0.104487 TGTAGTGTTTTGGGCGACGA 59.896 50.000 0.00 0.00 0.00 4.20
663 1645 3.636282 AAATGTAGTGTTTTGGGCGAC 57.364 42.857 0.00 0.00 0.00 5.19
665 1647 2.977169 CGAAAATGTAGTGTTTTGGGCG 59.023 45.455 0.00 0.00 0.00 6.13
668 1650 5.176407 TGACCGAAAATGTAGTGTTTTGG 57.824 39.130 0.00 0.00 42.04 3.28
670 1652 6.262273 AGTCATGACCGAAAATGTAGTGTTTT 59.738 34.615 22.21 0.00 0.00 2.43
686 1668 4.771590 TCAGCAAAAATGAGTCATGACC 57.228 40.909 22.21 13.88 0.00 4.02
687 1669 5.946298 TCATCAGCAAAAATGAGTCATGAC 58.054 37.500 18.47 18.47 0.00 3.06
689 1671 6.153756 TGTTCATCAGCAAAAATGAGTCATG 58.846 36.000 6.34 0.00 33.66 3.07
690 1672 6.335471 TGTTCATCAGCAAAAATGAGTCAT 57.665 33.333 0.00 0.00 33.66 3.06
692 1674 6.307318 GTCATGTTCATCAGCAAAAATGAGTC 59.693 38.462 0.00 0.00 33.66 3.36
693 1675 6.154445 GTCATGTTCATCAGCAAAAATGAGT 58.846 36.000 0.00 0.00 33.66 3.41
696 1678 6.422701 ACTTGTCATGTTCATCAGCAAAAATG 59.577 34.615 0.00 0.00 0.00 2.32
697 1679 6.518493 ACTTGTCATGTTCATCAGCAAAAAT 58.482 32.000 0.00 0.00 0.00 1.82
705 1696 6.883756 TGCCTAAATACTTGTCATGTTCATCA 59.116 34.615 0.00 0.00 0.00 3.07
706 1697 7.320443 TGCCTAAATACTTGTCATGTTCATC 57.680 36.000 0.00 0.00 0.00 2.92
738 1729 8.710749 ACATATATTGGTGTAAAAGATGGCAT 57.289 30.769 0.00 0.00 0.00 4.40
739 1730 7.777440 TGACATATATTGGTGTAAAAGATGGCA 59.223 33.333 0.00 0.00 0.00 4.92
741 1732 9.950680 GTTGACATATATTGGTGTAAAAGATGG 57.049 33.333 0.00 0.00 0.00 3.51
743 1734 9.131791 GGGTTGACATATATTGGTGTAAAAGAT 57.868 33.333 0.00 0.00 0.00 2.40
745 1736 7.340743 TGGGGTTGACATATATTGGTGTAAAAG 59.659 37.037 0.00 0.00 0.00 2.27
747 1738 6.732487 TGGGGTTGACATATATTGGTGTAAA 58.268 36.000 0.00 0.00 0.00 2.01
748 1739 6.328782 TGGGGTTGACATATATTGGTGTAA 57.671 37.500 0.00 0.00 0.00 2.41
749 1740 5.689031 GCTGGGGTTGACATATATTGGTGTA 60.689 44.000 0.00 0.00 0.00 2.90
751 1742 3.569701 GCTGGGGTTGACATATATTGGTG 59.430 47.826 0.00 0.00 0.00 4.17
752 1743 3.204158 TGCTGGGGTTGACATATATTGGT 59.796 43.478 0.00 0.00 0.00 3.67
753 1744 3.831323 TGCTGGGGTTGACATATATTGG 58.169 45.455 0.00 0.00 0.00 3.16
754 1745 4.321452 GCATGCTGGGGTTGACATATATTG 60.321 45.833 11.37 0.00 0.00 1.90
756 1747 3.074985 AGCATGCTGGGGTTGACATATAT 59.925 43.478 21.98 0.00 0.00 0.86
757 1748 2.442878 AGCATGCTGGGGTTGACATATA 59.557 45.455 21.98 0.00 0.00 0.86
758 1749 1.216175 AGCATGCTGGGGTTGACATAT 59.784 47.619 21.98 0.00 0.00 1.78
759 1750 0.625316 AGCATGCTGGGGTTGACATA 59.375 50.000 21.98 0.00 0.00 2.29
760 1751 0.625316 TAGCATGCTGGGGTTGACAT 59.375 50.000 30.42 1.31 0.00 3.06
761 1752 0.322456 GTAGCATGCTGGGGTTGACA 60.322 55.000 30.42 3.38 0.00 3.58
762 1753 1.369091 CGTAGCATGCTGGGGTTGAC 61.369 60.000 30.42 16.71 0.00 3.18
763 1754 1.078497 CGTAGCATGCTGGGGTTGA 60.078 57.895 30.42 5.06 0.00 3.18
764 1755 0.676466 TTCGTAGCATGCTGGGGTTG 60.676 55.000 30.42 12.54 0.00 3.77
772 1763 2.618241 TGAATGGGAATTCGTAGCATGC 59.382 45.455 10.51 10.51 33.42 4.06
775 1766 3.342377 TGTGAATGGGAATTCGTAGCA 57.658 42.857 0.00 0.00 33.42 3.49
780 1771 5.119931 TGACTTTTGTGAATGGGAATTCG 57.880 39.130 0.00 0.00 33.42 3.34
786 1777 2.886523 TGAGCTGACTTTTGTGAATGGG 59.113 45.455 0.00 0.00 0.00 4.00
799 1790 3.426695 CGGGATGAACAAAATGAGCTGAC 60.427 47.826 0.00 0.00 0.00 3.51
818 1810 2.352715 GGGAAAACTTCTTGCATTCGGG 60.353 50.000 0.00 0.00 0.00 5.14
820 1812 2.295909 TGGGGAAAACTTCTTGCATTCG 59.704 45.455 0.00 0.00 0.00 3.34
824 1816 3.708631 TCATTTGGGGAAAACTTCTTGCA 59.291 39.130 0.00 0.00 0.00 4.08
826 1818 6.160576 TCTTCATTTGGGGAAAACTTCTTG 57.839 37.500 0.00 0.00 0.00 3.02
837 1829 3.117398 TCCTCCATGATCTTCATTTGGGG 60.117 47.826 0.00 0.00 34.28 4.96
868 1861 9.569167 TCACTCTCTATTTGTTTACGATTGTAG 57.431 33.333 0.00 0.00 0.00 2.74
869 1862 9.350357 GTCACTCTCTATTTGTTTACGATTGTA 57.650 33.333 0.00 0.00 0.00 2.41
870 1863 8.088981 AGTCACTCTCTATTTGTTTACGATTGT 58.911 33.333 0.00 0.00 0.00 2.71
871 1864 8.376203 CAGTCACTCTCTATTTGTTTACGATTG 58.624 37.037 0.00 0.00 0.00 2.67
873 1866 6.531948 GCAGTCACTCTCTATTTGTTTACGAT 59.468 38.462 0.00 0.00 0.00 3.73
876 1869 7.602517 ATGCAGTCACTCTCTATTTGTTTAC 57.397 36.000 0.00 0.00 0.00 2.01
877 1870 7.361201 GCAATGCAGTCACTCTCTATTTGTTTA 60.361 37.037 0.00 0.00 0.00 2.01
878 1871 6.569226 GCAATGCAGTCACTCTCTATTTGTTT 60.569 38.462 0.00 0.00 0.00 2.83
879 1872 5.106396 GCAATGCAGTCACTCTCTATTTGTT 60.106 40.000 0.00 0.00 0.00 2.83
880 1873 4.394300 GCAATGCAGTCACTCTCTATTTGT 59.606 41.667 0.00 0.00 0.00 2.83
881 1874 4.393990 TGCAATGCAGTCACTCTCTATTTG 59.606 41.667 2.72 0.00 33.32 2.32
882 1875 4.582869 TGCAATGCAGTCACTCTCTATTT 58.417 39.130 2.72 0.00 33.32 1.40
883 1876 4.212143 TGCAATGCAGTCACTCTCTATT 57.788 40.909 2.72 0.00 33.32 1.73
884 1877 3.900966 TGCAATGCAGTCACTCTCTAT 57.099 42.857 2.72 0.00 33.32 1.98
885 1878 3.683365 TTGCAATGCAGTCACTCTCTA 57.317 42.857 8.31 0.00 40.61 2.43
886 1879 2.556144 TTGCAATGCAGTCACTCTCT 57.444 45.000 8.31 0.00 40.61 3.10
887 1880 6.293298 CCTTATATTGCAATGCAGTCACTCTC 60.293 42.308 22.27 0.00 40.61 3.20
889 1882 5.528690 TCCTTATATTGCAATGCAGTCACTC 59.471 40.000 22.27 0.00 40.61 3.51
898 2088 7.654520 CCTTCAATGGTTCCTTATATTGCAATG 59.345 37.037 22.27 4.76 32.14 2.82
903 2093 5.011023 GCCCCTTCAATGGTTCCTTATATTG 59.989 44.000 0.00 0.00 33.09 1.90
909 2099 0.786435 AGCCCCTTCAATGGTTCCTT 59.214 50.000 0.00 0.00 0.00 3.36
910 2100 1.681229 TAGCCCCTTCAATGGTTCCT 58.319 50.000 0.00 0.00 0.00 3.36
933 2123 2.508867 CGCGAGATGTGAATGTTTTGG 58.491 47.619 0.00 0.00 0.00 3.28
934 2124 1.906966 GCGCGAGATGTGAATGTTTTG 59.093 47.619 12.10 0.00 0.00 2.44
940 2131 0.462581 ATGTGGCGCGAGATGTGAAT 60.463 50.000 12.10 0.00 0.00 2.57
1029 2221 3.517500 TGGGGGCATTTTGGTAAGATTTC 59.482 43.478 0.00 0.00 0.00 2.17
1033 2225 2.704190 TTGGGGGCATTTTGGTAAGA 57.296 45.000 0.00 0.00 0.00 2.10
1034 2226 3.072330 AGTTTTGGGGGCATTTTGGTAAG 59.928 43.478 0.00 0.00 0.00 2.34
1428 2632 3.951775 ACAAGCAAGTGACAACCAAAA 57.048 38.095 0.00 0.00 0.00 2.44
1447 2651 1.268625 CCCTTACCCAAACGAAGCAAC 59.731 52.381 0.00 0.00 0.00 4.17
1448 2652 1.611519 CCCTTACCCAAACGAAGCAA 58.388 50.000 0.00 0.00 0.00 3.91
1449 2653 0.891904 GCCCTTACCCAAACGAAGCA 60.892 55.000 0.00 0.00 0.00 3.91
1450 2654 0.608308 AGCCCTTACCCAAACGAAGC 60.608 55.000 0.00 0.00 0.00 3.86
1451 2655 1.450025 GAGCCCTTACCCAAACGAAG 58.550 55.000 0.00 0.00 0.00 3.79
1452 2656 0.320946 CGAGCCCTTACCCAAACGAA 60.321 55.000 0.00 0.00 0.00 3.85
1453 2657 1.294138 CGAGCCCTTACCCAAACGA 59.706 57.895 0.00 0.00 0.00 3.85
1565 2770 1.094785 CTCCGCCGACAATGGAATTT 58.905 50.000 0.00 0.00 31.22 1.82
1623 2828 3.880490 AGCAAAATCACTCCAAACGTACA 59.120 39.130 0.00 0.00 0.00 2.90
1657 2862 2.680339 GCTGCCTTCGCTAAAATTCTCT 59.320 45.455 0.00 0.00 35.36 3.10
1666 2871 1.443407 GATGGAGCTGCCTTCGCTA 59.557 57.895 1.53 0.00 37.96 4.26
1686 2891 8.101419 ACTCACTAACAAGAAGTAATTAAGGGG 58.899 37.037 0.00 0.00 0.00 4.79
1723 2928 2.792599 GCATCTGCAGCAGAGCAC 59.207 61.111 28.60 16.95 44.08 4.40
1793 3024 3.849645 GCTTCCACATTTCACGACACAAG 60.850 47.826 0.00 0.00 0.00 3.16
1794 3025 2.032799 GCTTCCACATTTCACGACACAA 59.967 45.455 0.00 0.00 0.00 3.33
2060 3296 5.066246 AGAGCTGTTAGACCATCTTACGTAC 59.934 44.000 0.00 0.00 29.30 3.67
2065 3301 7.347252 TCTAAGAGAGCTGTTAGACCATCTTA 58.653 38.462 11.69 0.00 39.54 2.10
2070 3306 4.098654 GCATCTAAGAGAGCTGTTAGACCA 59.901 45.833 16.39 0.00 44.63 4.02
2200 3436 0.539051 AGCCTCAGTGACACTATGCC 59.461 55.000 8.02 0.00 0.00 4.40
2249 3485 4.036971 AGTCCGCGAATAGCTCCATATATC 59.963 45.833 8.23 0.00 45.59 1.63
2334 3570 4.896482 ACAAAGTGGCAGGGTTATTAACAA 59.104 37.500 8.73 0.00 0.00 2.83
2437 3673 4.698201 TCAGACCACAGGTATGTTCAAA 57.302 40.909 10.26 0.00 44.32 2.69
2646 3882 4.393062 CCGGTCATATTAGCATAAGCCTTG 59.607 45.833 0.00 0.00 43.56 3.61
2667 3903 6.345723 GCATTTAAATTGCAATCGATTACCCG 60.346 38.462 13.38 0.00 0.00 5.28
2733 3969 0.957395 AATGCCTTGAGGTGTCTGCG 60.957 55.000 0.00 0.00 37.57 5.18
3002 4238 2.621338 CGTGCATCTTCCACTGTGTAT 58.379 47.619 7.08 0.00 0.00 2.29
3219 4464 8.074474 TGCATAATTGTTTTTCAGAACACATG 57.926 30.769 0.00 0.00 39.11 3.21
3326 4572 4.515191 TGTGCTGATGAGTCTGGTAAAAAC 59.485 41.667 0.00 0.00 0.00 2.43
3369 4615 4.616835 GCCTTTGCAGAGGACTAATTGTTG 60.617 45.833 26.78 0.00 39.25 3.33
3859 5184 4.092383 GTGCATAAATTTGGCAGAGCAAAG 59.908 41.667 16.64 0.00 38.38 2.77
3869 5194 9.848172 GATATTTAAAAGCGTGCATAAATTTGG 57.152 29.630 0.00 0.00 32.09 3.28
4069 5395 9.078990 CCATCTATGGTATTAGTCAGTAAGACA 57.921 37.037 0.49 0.00 45.13 3.41
4113 5439 0.591659 GGGGAAGCTGTCGTTTGAAC 59.408 55.000 0.00 0.00 0.00 3.18
4116 5442 0.593128 CAAGGGGAAGCTGTCGTTTG 59.407 55.000 0.00 0.00 0.00 2.93
4167 5493 3.230134 TGGATTGACTTTTCTTGGGGTG 58.770 45.455 0.00 0.00 0.00 4.61
4221 5551 5.722021 AAATCGCAAGGGAGTTTACATTT 57.278 34.783 0.00 0.00 38.47 2.32
4409 5748 9.399403 GAAAAGTTGAGTTATTCAGTCCATTTC 57.601 33.333 0.00 0.00 37.07 2.17
4627 5966 2.566833 TTATGTCTGCCTTGCACTGT 57.433 45.000 0.00 0.00 33.79 3.55
4758 6097 3.249799 TCAGTTGTATTGCAGGAAACACG 59.750 43.478 6.46 0.00 0.00 4.49
4897 6237 4.755123 TCTTACTAACAAACTGCCTTCTGC 59.245 41.667 0.00 0.00 41.77 4.26
4996 6336 3.181445 TGGTACAAGCACACAAGATTCCT 60.181 43.478 0.00 0.00 31.92 3.36
5026 6366 5.476614 ACCTACAAATTCGAACTGAGGTAC 58.523 41.667 20.00 0.00 34.30 3.34
5190 6587 3.997021 CTCAGTAAGACGGCAGAACATTT 59.003 43.478 0.00 0.00 0.00 2.32
5265 6662 1.707989 TGGGGTGTTAGATTCCAGCAA 59.292 47.619 0.00 0.00 0.00 3.91
5655 7078 4.639755 TGATTCAGTTGCTCAAAACAGACA 59.360 37.500 0.00 0.00 32.21 3.41
5686 7109 2.639065 TGGGTATTCGAAGATGGTTGC 58.361 47.619 3.35 0.00 35.04 4.17
5698 7121 9.860898 GCAAATTATCTTGGATAATGGGTATTC 57.139 33.333 11.86 0.00 0.00 1.75
5727 7150 7.040823 CCTGAAATATGGGAAGATTCAGCTTAC 60.041 40.741 8.01 0.00 43.44 2.34
5870 7293 2.093235 GTCTATTCCTGCAAGTGGCTCT 60.093 50.000 0.00 0.00 45.15 4.09
5933 7356 1.610967 TGCCGTCTCACCCCACATA 60.611 57.895 0.00 0.00 0.00 2.29
5960 7383 4.081752 GGCCATATGGTTTGTTGAACATCA 60.082 41.667 22.79 0.00 40.13 3.07
5966 7389 1.815613 CGTGGCCATATGGTTTGTTGA 59.184 47.619 22.79 0.00 37.57 3.18
6065 7488 5.828747 TGATAGCGACACATAAGTTCCTAC 58.171 41.667 0.00 0.00 0.00 3.18
6164 7587 3.131223 GCAGGCATCTGAAGTAGTGTAGA 59.869 47.826 0.00 0.00 43.49 2.59
6206 7629 1.529244 GTTTGTGACTGGGGCTGCT 60.529 57.895 0.00 0.00 0.00 4.24
6701 8125 4.645136 GGAAAGGATCGAGGGCTTTTATTT 59.355 41.667 0.00 0.00 0.00 1.40
6714 8138 3.308866 GTGAAATACACGGGAAAGGATCG 59.691 47.826 0.00 0.00 39.78 3.69
6756 8183 0.606096 TCGGATCGAACAAAGCTGGA 59.394 50.000 0.00 0.00 31.06 3.86
6766 8193 2.094182 CCTTTTCTCTGGTCGGATCGAA 60.094 50.000 0.00 0.00 37.72 3.71
6769 8196 1.657822 GCCTTTTCTCTGGTCGGATC 58.342 55.000 0.00 0.00 0.00 3.36
6803 8230 1.296056 AAGGCGCGCGAATAACACTT 61.296 50.000 37.18 20.07 0.00 3.16
6915 8344 4.944317 ACACTGAGAGATTCACATCGACTA 59.056 41.667 0.00 0.00 34.17 2.59
6918 8347 3.119352 CCACACTGAGAGATTCACATCGA 60.119 47.826 0.00 0.00 34.17 3.59
6919 8348 3.119352 TCCACACTGAGAGATTCACATCG 60.119 47.826 0.00 0.00 34.17 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.