Multiple sequence alignment - TraesCS1D01G045900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G045900 chr1D 100.000 2549 0 0 1 2549 25463721 25466269 0.000000e+00 4708
1 TraesCS1D01G045900 chr1D 92.308 598 42 4 2 598 25416503 25417097 0.000000e+00 846
2 TraesCS1D01G045900 chr3D 95.601 1955 75 9 599 2548 546485995 546487943 0.000000e+00 3123
3 TraesCS1D01G045900 chr5D 94.643 1960 81 13 599 2549 44511943 44513887 0.000000e+00 3016
4 TraesCS1D01G045900 chr5D 79.885 174 29 5 429 598 120381367 120381196 3.440000e-24 122
5 TraesCS1D01G045900 chrUn 95.094 1916 72 12 642 2549 43407879 43409780 0.000000e+00 2998
6 TraesCS1D01G045900 chrUn 93.810 1971 94 14 593 2549 20573295 20575251 0.000000e+00 2939
7 TraesCS1D01G045900 chr4D 94.175 1957 93 12 599 2549 78732769 78730828 0.000000e+00 2963
8 TraesCS1D01G045900 chr7D 94.857 1886 70 13 682 2549 605599928 605601804 0.000000e+00 2920
9 TraesCS1D01G045900 chr7D 92.665 2004 69 17 599 2549 574727118 574725140 0.000000e+00 2815
10 TraesCS1D01G045900 chr7D 96.538 260 9 0 2290 2549 604917646 604917905 5.040000e-117 431
11 TraesCS1D01G045900 chr1B 93.316 1960 115 11 599 2549 593290586 593288634 0.000000e+00 2880
12 TraesCS1D01G045900 chr1B 86.644 599 55 9 1 598 40702590 40703164 7.690000e-180 640
13 TraesCS1D01G045900 chr1B 84.756 164 20 3 324 482 40860206 40860369 2.620000e-35 159
14 TraesCS1D01G045900 chr7B 92.339 1958 129 12 599 2544 101862225 101864173 0.000000e+00 2765
15 TraesCS1D01G045900 chr7B 92.304 1962 123 21 597 2549 9595590 9597532 0.000000e+00 2761
16 TraesCS1D01G045900 chr1A 86.914 619 53 18 1 598 26590074 26590685 0.000000e+00 669
17 TraesCS1D01G045900 chr1A 79.444 180 32 5 421 598 508104070 508103894 3.440000e-24 122
18 TraesCS1D01G045900 chr2D 97.318 261 6 1 2290 2549 331198906 331199166 2.330000e-120 442
19 TraesCS1D01G045900 chr3B 96.923 260 7 1 2290 2549 599077691 599077433 3.890000e-118 435


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G045900 chr1D 25463721 25466269 2548 False 4708 4708 100.000 1 2549 1 chr1D.!!$F2 2548
1 TraesCS1D01G045900 chr1D 25416503 25417097 594 False 846 846 92.308 2 598 1 chr1D.!!$F1 596
2 TraesCS1D01G045900 chr3D 546485995 546487943 1948 False 3123 3123 95.601 599 2548 1 chr3D.!!$F1 1949
3 TraesCS1D01G045900 chr5D 44511943 44513887 1944 False 3016 3016 94.643 599 2549 1 chr5D.!!$F1 1950
4 TraesCS1D01G045900 chrUn 43407879 43409780 1901 False 2998 2998 95.094 642 2549 1 chrUn.!!$F2 1907
5 TraesCS1D01G045900 chrUn 20573295 20575251 1956 False 2939 2939 93.810 593 2549 1 chrUn.!!$F1 1956
6 TraesCS1D01G045900 chr4D 78730828 78732769 1941 True 2963 2963 94.175 599 2549 1 chr4D.!!$R1 1950
7 TraesCS1D01G045900 chr7D 605599928 605601804 1876 False 2920 2920 94.857 682 2549 1 chr7D.!!$F2 1867
8 TraesCS1D01G045900 chr7D 574725140 574727118 1978 True 2815 2815 92.665 599 2549 1 chr7D.!!$R1 1950
9 TraesCS1D01G045900 chr1B 593288634 593290586 1952 True 2880 2880 93.316 599 2549 1 chr1B.!!$R1 1950
10 TraesCS1D01G045900 chr1B 40702590 40703164 574 False 640 640 86.644 1 598 1 chr1B.!!$F1 597
11 TraesCS1D01G045900 chr7B 101862225 101864173 1948 False 2765 2765 92.339 599 2544 1 chr7B.!!$F2 1945
12 TraesCS1D01G045900 chr7B 9595590 9597532 1942 False 2761 2761 92.304 597 2549 1 chr7B.!!$F1 1952
13 TraesCS1D01G045900 chr1A 26590074 26590685 611 False 669 669 86.914 1 598 1 chr1A.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 518 0.031994 AGCAACCGAACAACATTGGC 59.968 50.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 2603 0.665835 TGTGCAAACATTCACGGTCC 59.334 50.0 0.0 0.0 36.06 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.758554 TGCTCTCCTTTATTGAAGCAACC 59.241 43.478 0.00 0.00 33.84 3.77
31 32 6.151648 TCTCCTTTATTGAAGCAACCATCTTG 59.848 38.462 0.00 0.00 33.84 3.02
57 58 3.118261 TCTGGGCTGTTGCTCCTTATAAG 60.118 47.826 5.43 5.43 39.40 1.73
112 113 6.523840 AGTTCAATGCAACAACCATGTAATT 58.476 32.000 0.00 0.00 39.40 1.40
113 114 7.665690 AGTTCAATGCAACAACCATGTAATTA 58.334 30.769 0.00 0.00 39.40 1.40
114 115 8.147058 AGTTCAATGCAACAACCATGTAATTAA 58.853 29.630 0.00 0.00 39.40 1.40
115 116 8.934825 GTTCAATGCAACAACCATGTAATTAAT 58.065 29.630 0.00 0.00 39.40 1.40
116 117 8.476657 TCAATGCAACAACCATGTAATTAATG 57.523 30.769 0.00 0.00 39.40 1.90
117 118 6.907206 ATGCAACAACCATGTAATTAATGC 57.093 33.333 0.00 0.00 39.40 3.56
118 119 5.787380 TGCAACAACCATGTAATTAATGCA 58.213 33.333 0.00 0.00 41.19 3.96
119 120 6.226052 TGCAACAACCATGTAATTAATGCAA 58.774 32.000 0.00 0.00 40.76 4.08
120 121 6.707608 TGCAACAACCATGTAATTAATGCAAA 59.292 30.769 0.00 0.00 40.76 3.68
121 122 7.227314 TGCAACAACCATGTAATTAATGCAAAA 59.773 29.630 0.00 0.00 40.76 2.44
122 123 8.072567 GCAACAACCATGTAATTAATGCAAAAA 58.927 29.630 0.00 0.00 39.40 1.94
135 136 8.789825 ATTAATGCAAAAATTAATGTGCCTCA 57.210 26.923 13.53 0.53 39.90 3.86
136 137 8.613060 TTAATGCAAAAATTAATGTGCCTCAA 57.387 26.923 13.53 5.16 36.12 3.02
137 138 6.730960 ATGCAAAAATTAATGTGCCTCAAG 57.269 33.333 13.53 0.00 36.12 3.02
138 139 5.851720 TGCAAAAATTAATGTGCCTCAAGA 58.148 33.333 13.53 0.00 36.12 3.02
139 140 5.695816 TGCAAAAATTAATGTGCCTCAAGAC 59.304 36.000 13.53 0.00 36.12 3.01
140 141 5.120674 GCAAAAATTAATGTGCCTCAAGACC 59.879 40.000 7.48 0.00 0.00 3.85
141 142 6.458210 CAAAAATTAATGTGCCTCAAGACCT 58.542 36.000 0.00 0.00 0.00 3.85
142 143 7.601856 CAAAAATTAATGTGCCTCAAGACCTA 58.398 34.615 0.00 0.00 0.00 3.08
143 144 7.961326 AAAATTAATGTGCCTCAAGACCTAT 57.039 32.000 0.00 0.00 0.00 2.57
144 145 6.949352 AATTAATGTGCCTCAAGACCTATG 57.051 37.500 0.00 0.00 0.00 2.23
145 146 5.435686 TTAATGTGCCTCAAGACCTATGT 57.564 39.130 0.00 0.00 0.00 2.29
146 147 2.768253 TGTGCCTCAAGACCTATGTG 57.232 50.000 0.00 0.00 0.00 3.21
147 148 1.339055 TGTGCCTCAAGACCTATGTGC 60.339 52.381 0.00 0.00 0.00 4.57
148 149 0.983467 TGCCTCAAGACCTATGTGCA 59.017 50.000 0.00 0.00 0.00 4.57
149 150 1.339055 TGCCTCAAGACCTATGTGCAC 60.339 52.381 10.75 10.75 0.00 4.57
150 151 1.065854 GCCTCAAGACCTATGTGCACT 60.066 52.381 19.41 6.22 0.00 4.40
151 152 2.616510 GCCTCAAGACCTATGTGCACTT 60.617 50.000 19.41 14.68 0.00 3.16
152 153 3.005554 CCTCAAGACCTATGTGCACTTG 58.994 50.000 19.41 12.04 39.13 3.16
153 154 3.557898 CCTCAAGACCTATGTGCACTTGT 60.558 47.826 19.41 9.47 38.94 3.16
154 155 3.664107 TCAAGACCTATGTGCACTTGTC 58.336 45.455 19.41 17.20 38.94 3.18
155 156 2.744202 CAAGACCTATGTGCACTTGTCC 59.256 50.000 19.41 3.16 34.96 4.02
156 157 1.977854 AGACCTATGTGCACTTGTCCA 59.022 47.619 19.41 0.00 0.00 4.02
157 158 2.076863 GACCTATGTGCACTTGTCCAC 58.923 52.381 19.41 0.79 0.00 4.02
158 159 1.699634 ACCTATGTGCACTTGTCCACT 59.300 47.619 19.41 0.00 33.26 4.00
159 160 2.903784 ACCTATGTGCACTTGTCCACTA 59.096 45.455 19.41 0.00 33.26 2.74
160 161 3.519510 ACCTATGTGCACTTGTCCACTAT 59.480 43.478 19.41 1.95 33.26 2.12
161 162 3.873361 CCTATGTGCACTTGTCCACTATG 59.127 47.826 19.41 0.00 33.26 2.23
162 163 2.183478 TGTGCACTTGTCCACTATGG 57.817 50.000 19.41 0.00 39.43 2.74
163 164 1.696884 TGTGCACTTGTCCACTATGGA 59.303 47.619 19.41 0.00 45.98 3.41
173 174 3.737559 TCCACTATGGAGGTGCATTTT 57.262 42.857 0.00 0.00 42.67 1.82
174 175 4.853468 TCCACTATGGAGGTGCATTTTA 57.147 40.909 0.00 0.00 42.67 1.52
175 176 5.387113 TCCACTATGGAGGTGCATTTTAT 57.613 39.130 0.00 0.00 42.67 1.40
176 177 5.376625 TCCACTATGGAGGTGCATTTTATC 58.623 41.667 0.00 0.00 42.67 1.75
177 178 5.132648 TCCACTATGGAGGTGCATTTTATCT 59.867 40.000 0.00 0.00 42.67 1.98
178 179 6.328934 TCCACTATGGAGGTGCATTTTATCTA 59.671 38.462 0.00 0.00 42.67 1.98
179 180 6.998074 CCACTATGGAGGTGCATTTTATCTAA 59.002 38.462 0.00 0.00 40.96 2.10
180 181 7.502226 CCACTATGGAGGTGCATTTTATCTAAA 59.498 37.037 0.00 0.00 40.96 1.85
181 182 8.345565 CACTATGGAGGTGCATTTTATCTAAAC 58.654 37.037 0.00 0.00 0.00 2.01
182 183 6.715347 ATGGAGGTGCATTTTATCTAAACC 57.285 37.500 0.00 0.00 0.00 3.27
183 184 4.638421 TGGAGGTGCATTTTATCTAAACCG 59.362 41.667 0.00 0.00 0.00 4.44
184 185 4.497507 GGAGGTGCATTTTATCTAAACCGC 60.498 45.833 0.00 0.00 0.00 5.68
185 186 4.270008 AGGTGCATTTTATCTAAACCGCT 58.730 39.130 0.00 0.00 31.79 5.52
186 187 4.705023 AGGTGCATTTTATCTAAACCGCTT 59.295 37.500 0.00 0.00 31.79 4.68
187 188 5.185056 AGGTGCATTTTATCTAAACCGCTTT 59.815 36.000 0.00 0.00 31.79 3.51
188 189 5.515270 GGTGCATTTTATCTAAACCGCTTTC 59.485 40.000 0.00 0.00 31.79 2.62
189 190 5.227184 GTGCATTTTATCTAAACCGCTTTCG 59.773 40.000 0.00 0.00 31.79 3.46
190 191 5.106475 TGCATTTTATCTAAACCGCTTTCGT 60.106 36.000 0.00 0.00 31.79 3.85
191 192 5.451342 GCATTTTATCTAAACCGCTTTCGTC 59.549 40.000 0.00 0.00 0.00 4.20
192 193 6.674760 GCATTTTATCTAAACCGCTTTCGTCT 60.675 38.462 0.00 0.00 0.00 4.18
193 194 6.790285 TTTTATCTAAACCGCTTTCGTCTT 57.210 33.333 0.00 0.00 0.00 3.01
194 195 5.773239 TTATCTAAACCGCTTTCGTCTTG 57.227 39.130 0.00 0.00 0.00 3.02
195 196 1.796459 TCTAAACCGCTTTCGTCTTGC 59.204 47.619 0.00 0.00 0.00 4.01
196 197 0.869730 TAAACCGCTTTCGTCTTGCC 59.130 50.000 0.00 0.00 0.00 4.52
197 198 2.113131 AAACCGCTTTCGTCTTGCCG 62.113 55.000 0.00 0.00 0.00 5.69
198 199 3.041940 CCGCTTTCGTCTTGCCGT 61.042 61.111 0.00 0.00 0.00 5.68
199 200 2.604174 CCGCTTTCGTCTTGCCGTT 61.604 57.895 0.00 0.00 0.00 4.44
200 201 1.438710 CGCTTTCGTCTTGCCGTTG 60.439 57.895 0.00 0.00 0.00 4.10
201 202 1.082104 GCTTTCGTCTTGCCGTTGG 60.082 57.895 0.00 0.00 0.00 3.77
202 203 1.503818 GCTTTCGTCTTGCCGTTGGA 61.504 55.000 0.00 0.00 0.00 3.53
203 204 0.512952 CTTTCGTCTTGCCGTTGGAG 59.487 55.000 0.00 0.00 0.00 3.86
204 205 0.105224 TTTCGTCTTGCCGTTGGAGA 59.895 50.000 0.00 0.00 0.00 3.71
205 206 0.320374 TTCGTCTTGCCGTTGGAGAT 59.680 50.000 0.00 0.00 0.00 2.75
206 207 1.179152 TCGTCTTGCCGTTGGAGATA 58.821 50.000 0.00 0.00 0.00 1.98
207 208 1.546923 TCGTCTTGCCGTTGGAGATAA 59.453 47.619 0.00 0.00 0.00 1.75
208 209 2.028839 TCGTCTTGCCGTTGGAGATAAA 60.029 45.455 0.00 0.00 0.00 1.40
209 210 2.739913 CGTCTTGCCGTTGGAGATAAAA 59.260 45.455 0.00 0.00 0.00 1.52
210 211 3.181520 CGTCTTGCCGTTGGAGATAAAAG 60.182 47.826 0.00 0.00 0.00 2.27
211 212 3.127030 GTCTTGCCGTTGGAGATAAAAGG 59.873 47.826 0.00 0.00 0.00 3.11
212 213 3.008594 TCTTGCCGTTGGAGATAAAAGGA 59.991 43.478 0.00 0.00 0.00 3.36
213 214 3.426787 TGCCGTTGGAGATAAAAGGAA 57.573 42.857 0.00 0.00 0.00 3.36
214 215 3.078837 TGCCGTTGGAGATAAAAGGAAC 58.921 45.455 0.00 0.00 0.00 3.62
216 217 3.374367 GCCGTTGGAGATAAAAGGAACTC 59.626 47.826 0.00 0.00 38.49 3.01
217 218 4.575885 CCGTTGGAGATAAAAGGAACTCA 58.424 43.478 0.00 0.00 38.49 3.41
218 219 4.392138 CCGTTGGAGATAAAAGGAACTCAC 59.608 45.833 0.00 0.00 38.49 3.51
219 220 4.392138 CGTTGGAGATAAAAGGAACTCACC 59.608 45.833 0.00 0.00 38.49 4.02
220 221 5.561679 GTTGGAGATAAAAGGAACTCACCT 58.438 41.667 0.00 0.00 38.49 4.00
221 222 6.573680 CGTTGGAGATAAAAGGAACTCACCTA 60.574 42.308 0.00 0.00 38.49 3.08
222 223 6.546428 TGGAGATAAAAGGAACTCACCTAG 57.454 41.667 0.00 0.00 38.49 3.02
223 224 6.261435 TGGAGATAAAAGGAACTCACCTAGA 58.739 40.000 0.00 0.00 38.49 2.43
224 225 6.729100 TGGAGATAAAAGGAACTCACCTAGAA 59.271 38.462 0.00 0.00 38.49 2.10
225 226 7.093289 TGGAGATAAAAGGAACTCACCTAGAAG 60.093 40.741 0.00 0.00 38.49 2.85
226 227 7.124448 GGAGATAAAAGGAACTCACCTAGAAGA 59.876 40.741 0.00 0.00 38.49 2.87
227 228 8.437274 AGATAAAAGGAACTCACCTAGAAGAA 57.563 34.615 0.00 0.00 38.49 2.52
228 229 8.881262 AGATAAAAGGAACTCACCTAGAAGAAA 58.119 33.333 0.00 0.00 38.49 2.52
229 230 9.157104 GATAAAAGGAACTCACCTAGAAGAAAG 57.843 37.037 0.00 0.00 38.49 2.62
230 231 5.491323 AAGGAACTCACCTAGAAGAAAGG 57.509 43.478 0.00 0.00 38.49 3.11
231 232 4.753186 AGGAACTCACCTAGAAGAAAGGA 58.247 43.478 0.00 0.00 38.65 3.36
232 233 4.528987 AGGAACTCACCTAGAAGAAAGGAC 59.471 45.833 0.00 0.00 38.65 3.85
233 234 4.528987 GGAACTCACCTAGAAGAAAGGACT 59.471 45.833 0.00 0.00 37.57 3.85
234 235 5.336929 GGAACTCACCTAGAAGAAAGGACTC 60.337 48.000 0.00 0.00 37.57 3.36
235 236 4.090819 ACTCACCTAGAAGAAAGGACTCC 58.909 47.826 0.00 0.00 37.57 3.85
236 237 4.090090 CTCACCTAGAAGAAAGGACTCCA 58.910 47.826 0.00 0.00 37.57 3.86
237 238 4.489737 TCACCTAGAAGAAAGGACTCCAA 58.510 43.478 0.00 0.00 37.57 3.53
238 239 5.094387 TCACCTAGAAGAAAGGACTCCAAT 58.906 41.667 0.00 0.00 37.57 3.16
239 240 5.046304 TCACCTAGAAGAAAGGACTCCAATG 60.046 44.000 0.00 0.00 37.57 2.82
240 241 4.195416 CCTAGAAGAAAGGACTCCAATGC 58.805 47.826 0.00 0.00 36.08 3.56
241 242 4.080638 CCTAGAAGAAAGGACTCCAATGCT 60.081 45.833 0.00 0.00 36.08 3.79
242 243 5.129485 CCTAGAAGAAAGGACTCCAATGCTA 59.871 44.000 0.00 0.00 36.08 3.49
243 244 5.096443 AGAAGAAAGGACTCCAATGCTAG 57.904 43.478 0.00 0.00 0.00 3.42
244 245 3.274095 AGAAAGGACTCCAATGCTAGC 57.726 47.619 8.10 8.10 0.00 3.42
245 246 2.092699 AGAAAGGACTCCAATGCTAGCC 60.093 50.000 13.29 0.00 0.00 3.93
246 247 1.589414 AAGGACTCCAATGCTAGCCT 58.411 50.000 13.29 0.00 0.00 4.58
247 248 2.478872 AGGACTCCAATGCTAGCCTA 57.521 50.000 13.29 0.00 0.00 3.93
248 249 2.324541 AGGACTCCAATGCTAGCCTAG 58.675 52.381 13.29 4.90 0.00 3.02
249 250 2.043227 GGACTCCAATGCTAGCCTAGT 58.957 52.381 13.29 8.15 0.00 2.57
250 251 2.224161 GGACTCCAATGCTAGCCTAGTG 60.224 54.545 13.29 3.73 0.00 2.74
251 252 1.765314 ACTCCAATGCTAGCCTAGTGG 59.235 52.381 13.29 13.57 0.00 4.00
252 253 1.071385 CTCCAATGCTAGCCTAGTGGG 59.929 57.143 18.24 9.40 38.36 4.61
268 269 4.865865 GGCTAGGCAGACCACATC 57.134 61.111 12.16 0.00 39.06 3.06
269 270 1.907739 GGCTAGGCAGACCACATCA 59.092 57.895 12.16 0.00 39.06 3.07
270 271 0.253044 GGCTAGGCAGACCACATCAA 59.747 55.000 12.16 0.00 39.06 2.57
271 272 1.373570 GCTAGGCAGACCACATCAAC 58.626 55.000 0.00 0.00 39.06 3.18
272 273 1.339055 GCTAGGCAGACCACATCAACA 60.339 52.381 0.00 0.00 39.06 3.33
273 274 2.681976 GCTAGGCAGACCACATCAACAT 60.682 50.000 0.00 0.00 39.06 2.71
274 275 2.592102 AGGCAGACCACATCAACATT 57.408 45.000 0.00 0.00 39.06 2.71
275 276 2.440409 AGGCAGACCACATCAACATTC 58.560 47.619 0.00 0.00 39.06 2.67
276 277 2.040813 AGGCAGACCACATCAACATTCT 59.959 45.455 0.00 0.00 39.06 2.40
277 278 2.421424 GGCAGACCACATCAACATTCTC 59.579 50.000 0.00 0.00 35.26 2.87
278 279 2.421424 GCAGACCACATCAACATTCTCC 59.579 50.000 0.00 0.00 0.00 3.71
279 280 2.674852 CAGACCACATCAACATTCTCCG 59.325 50.000 0.00 0.00 0.00 4.63
280 281 2.303022 AGACCACATCAACATTCTCCGT 59.697 45.455 0.00 0.00 0.00 4.69
281 282 3.074412 GACCACATCAACATTCTCCGTT 58.926 45.455 0.00 0.00 0.00 4.44
282 283 3.486383 ACCACATCAACATTCTCCGTTT 58.514 40.909 0.00 0.00 0.00 3.60
283 284 3.888930 ACCACATCAACATTCTCCGTTTT 59.111 39.130 0.00 0.00 0.00 2.43
284 285 4.229096 CCACATCAACATTCTCCGTTTTG 58.771 43.478 0.00 0.00 0.00 2.44
285 286 4.229096 CACATCAACATTCTCCGTTTTGG 58.771 43.478 0.00 0.00 40.09 3.28
299 300 4.456566 TCCGTTTTGGATTAGGTTGTTAGC 59.543 41.667 0.00 0.00 43.74 3.09
300 301 4.380128 CCGTTTTGGATTAGGTTGTTAGCC 60.380 45.833 0.00 0.00 42.00 3.93
301 302 4.670735 CGTTTTGGATTAGGTTGTTAGCCG 60.671 45.833 0.00 0.00 0.00 5.52
302 303 3.706600 TTGGATTAGGTTGTTAGCCGT 57.293 42.857 0.00 0.00 0.00 5.68
303 304 2.980568 TGGATTAGGTTGTTAGCCGTG 58.019 47.619 0.00 0.00 0.00 4.94
304 305 2.303600 TGGATTAGGTTGTTAGCCGTGT 59.696 45.455 0.00 0.00 0.00 4.49
305 306 2.676342 GGATTAGGTTGTTAGCCGTGTG 59.324 50.000 0.00 0.00 0.00 3.82
306 307 2.914695 TTAGGTTGTTAGCCGTGTGT 57.085 45.000 0.00 0.00 0.00 3.72
307 308 2.914695 TAGGTTGTTAGCCGTGTGTT 57.085 45.000 0.00 0.00 0.00 3.32
308 309 1.589803 AGGTTGTTAGCCGTGTGTTC 58.410 50.000 0.00 0.00 0.00 3.18
309 310 0.233848 GGTTGTTAGCCGTGTGTTCG 59.766 55.000 0.00 0.00 0.00 3.95
310 311 0.932399 GTTGTTAGCCGTGTGTTCGT 59.068 50.000 0.00 0.00 0.00 3.85
311 312 2.126467 GTTGTTAGCCGTGTGTTCGTA 58.874 47.619 0.00 0.00 0.00 3.43
312 313 2.505628 TGTTAGCCGTGTGTTCGTAA 57.494 45.000 0.00 0.00 0.00 3.18
313 314 2.396601 TGTTAGCCGTGTGTTCGTAAG 58.603 47.619 0.00 0.00 0.00 2.34
328 329 3.777478 TCGTAAGATAAGTGGGCTTTCG 58.223 45.455 0.00 0.00 45.01 3.46
329 330 2.864343 CGTAAGATAAGTGGGCTTTCGG 59.136 50.000 0.00 0.00 43.02 4.30
330 331 3.429822 CGTAAGATAAGTGGGCTTTCGGA 60.430 47.826 0.00 0.00 43.02 4.55
331 332 3.713826 AAGATAAGTGGGCTTTCGGAA 57.286 42.857 0.00 0.00 36.22 4.30
332 333 3.713826 AGATAAGTGGGCTTTCGGAAA 57.286 42.857 2.78 2.78 36.22 3.13
333 334 4.236527 AGATAAGTGGGCTTTCGGAAAT 57.763 40.909 3.24 0.00 36.22 2.17
334 335 3.947834 AGATAAGTGGGCTTTCGGAAATG 59.052 43.478 3.24 0.20 36.22 2.32
335 336 0.603065 AAGTGGGCTTTCGGAAATGC 59.397 50.000 3.24 9.46 35.40 3.56
338 339 2.892640 GGCTTTCGGAAATGCCCC 59.107 61.111 22.57 11.08 45.52 5.80
339 340 1.981853 GGCTTTCGGAAATGCCCCA 60.982 57.895 22.57 0.00 45.52 4.96
340 341 1.329913 GGCTTTCGGAAATGCCCCAT 61.330 55.000 22.57 0.00 45.52 4.00
341 342 0.103026 GCTTTCGGAAATGCCCCATC 59.897 55.000 3.24 0.00 31.18 3.51
342 343 1.767759 CTTTCGGAAATGCCCCATCT 58.232 50.000 3.24 0.00 0.00 2.90
343 344 1.406539 CTTTCGGAAATGCCCCATCTG 59.593 52.381 3.24 0.00 0.00 2.90
344 345 0.331278 TTCGGAAATGCCCCATCTGT 59.669 50.000 0.00 0.00 0.00 3.41
345 346 0.394216 TCGGAAATGCCCCATCTGTG 60.394 55.000 0.00 0.00 0.00 3.66
346 347 0.680921 CGGAAATGCCCCATCTGTGT 60.681 55.000 0.00 0.00 0.00 3.72
347 348 1.408127 CGGAAATGCCCCATCTGTGTA 60.408 52.381 0.00 0.00 0.00 2.90
348 349 2.749466 CGGAAATGCCCCATCTGTGTAT 60.749 50.000 0.00 0.00 0.00 2.29
349 350 3.299503 GGAAATGCCCCATCTGTGTATT 58.700 45.455 0.00 0.00 0.00 1.89
350 351 3.068590 GGAAATGCCCCATCTGTGTATTG 59.931 47.826 0.00 0.00 0.00 1.90
351 352 3.386932 AATGCCCCATCTGTGTATTGT 57.613 42.857 0.00 0.00 0.00 2.71
352 353 2.418368 TGCCCCATCTGTGTATTGTC 57.582 50.000 0.00 0.00 0.00 3.18
353 354 1.064758 TGCCCCATCTGTGTATTGTCC 60.065 52.381 0.00 0.00 0.00 4.02
354 355 1.750682 GCCCCATCTGTGTATTGTCCC 60.751 57.143 0.00 0.00 0.00 4.46
355 356 1.563879 CCCCATCTGTGTATTGTCCCA 59.436 52.381 0.00 0.00 0.00 4.37
356 357 2.175499 CCCCATCTGTGTATTGTCCCAT 59.825 50.000 0.00 0.00 0.00 4.00
357 358 3.373001 CCCCATCTGTGTATTGTCCCATT 60.373 47.826 0.00 0.00 0.00 3.16
358 359 4.280819 CCCATCTGTGTATTGTCCCATTT 58.719 43.478 0.00 0.00 0.00 2.32
359 360 4.711355 CCCATCTGTGTATTGTCCCATTTT 59.289 41.667 0.00 0.00 0.00 1.82
360 361 5.890985 CCCATCTGTGTATTGTCCCATTTTA 59.109 40.000 0.00 0.00 0.00 1.52
361 362 6.183360 CCCATCTGTGTATTGTCCCATTTTAC 60.183 42.308 0.00 0.00 0.00 2.01
362 363 6.183360 CCATCTGTGTATTGTCCCATTTTACC 60.183 42.308 0.00 0.00 0.00 2.85
363 364 5.882040 TCTGTGTATTGTCCCATTTTACCA 58.118 37.500 0.00 0.00 0.00 3.25
364 365 5.708230 TCTGTGTATTGTCCCATTTTACCAC 59.292 40.000 0.00 0.00 0.00 4.16
365 366 4.456222 TGTGTATTGTCCCATTTTACCACG 59.544 41.667 0.00 0.00 0.00 4.94
366 367 3.440872 TGTATTGTCCCATTTTACCACGC 59.559 43.478 0.00 0.00 0.00 5.34
367 368 2.279935 TTGTCCCATTTTACCACGCT 57.720 45.000 0.00 0.00 0.00 5.07
368 369 1.529226 TGTCCCATTTTACCACGCTG 58.471 50.000 0.00 0.00 0.00 5.18
369 370 1.072489 TGTCCCATTTTACCACGCTGA 59.928 47.619 0.00 0.00 0.00 4.26
370 371 2.156098 GTCCCATTTTACCACGCTGAA 58.844 47.619 0.00 0.00 0.00 3.02
371 372 2.095415 GTCCCATTTTACCACGCTGAAC 60.095 50.000 0.00 0.00 0.00 3.18
372 373 1.883275 CCCATTTTACCACGCTGAACA 59.117 47.619 0.00 0.00 0.00 3.18
373 374 2.294791 CCCATTTTACCACGCTGAACAA 59.705 45.455 0.00 0.00 0.00 2.83
374 375 3.564511 CCATTTTACCACGCTGAACAAG 58.435 45.455 0.00 0.00 0.00 3.16
375 376 3.564511 CATTTTACCACGCTGAACAAGG 58.435 45.455 0.00 0.00 0.00 3.61
376 377 0.948678 TTTACCACGCTGAACAAGGC 59.051 50.000 0.00 0.00 0.00 4.35
377 378 0.887387 TTACCACGCTGAACAAGGCC 60.887 55.000 0.00 0.00 0.00 5.19
378 379 1.764571 TACCACGCTGAACAAGGCCT 61.765 55.000 0.00 0.00 0.00 5.19
379 380 1.898574 CCACGCTGAACAAGGCCTT 60.899 57.895 13.78 13.78 0.00 4.35
380 381 1.455383 CCACGCTGAACAAGGCCTTT 61.455 55.000 17.61 1.07 0.00 3.11
381 382 0.318107 CACGCTGAACAAGGCCTTTG 60.318 55.000 17.61 14.05 42.68 2.77
382 383 0.465460 ACGCTGAACAAGGCCTTTGA 60.465 50.000 17.61 0.00 39.21 2.69
383 384 0.667993 CGCTGAACAAGGCCTTTGAA 59.332 50.000 17.61 0.62 39.21 2.69
384 385 1.066908 CGCTGAACAAGGCCTTTGAAA 59.933 47.619 17.61 1.03 39.21 2.69
385 386 2.481104 CGCTGAACAAGGCCTTTGAAAA 60.481 45.455 17.61 0.00 39.21 2.29
386 387 3.126073 GCTGAACAAGGCCTTTGAAAAG 58.874 45.455 17.61 11.13 39.21 2.27
387 388 3.126073 CTGAACAAGGCCTTTGAAAAGC 58.874 45.455 17.61 1.82 39.21 3.51
388 389 2.499289 TGAACAAGGCCTTTGAAAAGCA 59.501 40.909 17.61 4.59 39.21 3.91
389 390 3.055530 TGAACAAGGCCTTTGAAAAGCAA 60.056 39.130 17.61 0.00 39.21 3.91
390 391 3.625649 ACAAGGCCTTTGAAAAGCAAA 57.374 38.095 17.61 0.00 43.89 3.68
391 392 4.155063 ACAAGGCCTTTGAAAAGCAAAT 57.845 36.364 17.61 0.00 44.90 2.32
392 393 4.525996 ACAAGGCCTTTGAAAAGCAAATT 58.474 34.783 17.61 0.00 44.90 1.82
393 394 4.576053 ACAAGGCCTTTGAAAAGCAAATTC 59.424 37.500 17.61 0.00 44.90 2.17
394 395 3.392882 AGGCCTTTGAAAAGCAAATTCG 58.607 40.909 0.00 0.00 44.90 3.34
395 396 2.480037 GGCCTTTGAAAAGCAAATTCGG 59.520 45.455 0.00 0.00 44.90 4.30
396 397 3.130633 GCCTTTGAAAAGCAAATTCGGT 58.869 40.909 0.00 0.00 44.90 4.69
397 398 3.184379 GCCTTTGAAAAGCAAATTCGGTC 59.816 43.478 0.00 0.00 44.90 4.79
398 399 4.620982 CCTTTGAAAAGCAAATTCGGTCT 58.379 39.130 0.00 0.00 44.90 3.85
399 400 4.445385 CCTTTGAAAAGCAAATTCGGTCTG 59.555 41.667 0.00 0.00 44.90 3.51
400 401 3.011949 TGAAAAGCAAATTCGGTCTGC 57.988 42.857 0.00 0.00 36.29 4.26
401 402 1.978782 GAAAAGCAAATTCGGTCTGCG 59.021 47.619 0.00 0.00 41.05 5.18
402 403 0.951558 AAAGCAAATTCGGTCTGCGT 59.048 45.000 0.00 0.00 41.05 5.24
403 404 0.238289 AAGCAAATTCGGTCTGCGTG 59.762 50.000 0.00 0.00 41.05 5.34
404 405 1.797537 GCAAATTCGGTCTGCGTGC 60.798 57.895 0.00 0.00 0.00 5.34
405 406 1.868997 CAAATTCGGTCTGCGTGCT 59.131 52.632 0.00 0.00 0.00 4.40
406 407 0.238289 CAAATTCGGTCTGCGTGCTT 59.762 50.000 0.00 0.00 0.00 3.91
407 408 0.517316 AAATTCGGTCTGCGTGCTTC 59.483 50.000 0.00 0.00 0.00 3.86
408 409 1.626654 AATTCGGTCTGCGTGCTTCG 61.627 55.000 0.00 0.00 43.12 3.79
409 410 2.765250 ATTCGGTCTGCGTGCTTCGT 62.765 55.000 0.00 0.00 42.13 3.85
410 411 3.470567 CGGTCTGCGTGCTTCGTC 61.471 66.667 0.00 0.00 42.13 4.20
411 412 2.355837 GGTCTGCGTGCTTCGTCA 60.356 61.111 0.00 2.64 42.13 4.35
412 413 2.658707 GGTCTGCGTGCTTCGTCAC 61.659 63.158 0.00 0.00 42.13 3.67
413 414 1.661821 GTCTGCGTGCTTCGTCACT 60.662 57.895 0.00 0.00 42.13 3.41
414 415 0.386858 GTCTGCGTGCTTCGTCACTA 60.387 55.000 0.00 0.00 42.13 2.74
415 416 0.312729 TCTGCGTGCTTCGTCACTAA 59.687 50.000 0.00 0.00 42.13 2.24
416 417 1.136690 CTGCGTGCTTCGTCACTAAA 58.863 50.000 0.00 0.00 42.13 1.85
417 418 1.525197 CTGCGTGCTTCGTCACTAAAA 59.475 47.619 0.00 0.00 42.13 1.52
418 419 1.525197 TGCGTGCTTCGTCACTAAAAG 59.475 47.619 0.00 0.00 42.13 2.27
419 420 1.525619 GCGTGCTTCGTCACTAAAAGT 59.474 47.619 4.16 0.00 42.13 2.66
420 421 2.033151 GCGTGCTTCGTCACTAAAAGTT 60.033 45.455 4.16 0.00 42.13 2.66
421 422 3.545426 GCGTGCTTCGTCACTAAAAGTTT 60.545 43.478 4.16 0.00 42.13 2.66
422 423 4.584394 CGTGCTTCGTCACTAAAAGTTTT 58.416 39.130 6.06 6.06 34.92 2.43
423 424 5.025826 CGTGCTTCGTCACTAAAAGTTTTT 58.974 37.500 6.10 0.00 34.92 1.94
444 445 2.495155 TTTAAAGGAGGTAACCCCGC 57.505 50.000 0.00 0.00 38.74 6.13
445 446 1.660242 TTAAAGGAGGTAACCCCGCT 58.340 50.000 0.00 0.00 38.74 5.52
446 447 1.197812 TAAAGGAGGTAACCCCGCTC 58.802 55.000 0.00 0.00 38.74 5.03
447 448 0.546988 AAAGGAGGTAACCCCGCTCT 60.547 55.000 0.00 0.00 38.74 4.09
448 449 0.976590 AAGGAGGTAACCCCGCTCTC 60.977 60.000 0.00 0.00 38.74 3.20
449 450 1.381463 GGAGGTAACCCCGCTCTCT 60.381 63.158 0.00 0.00 38.74 3.10
450 451 1.677637 GGAGGTAACCCCGCTCTCTG 61.678 65.000 0.00 0.00 38.74 3.35
451 452 2.187163 GGTAACCCCGCTCTCTGC 59.813 66.667 0.00 0.00 38.57 4.26
452 453 2.656069 GGTAACCCCGCTCTCTGCA 61.656 63.158 0.00 0.00 43.06 4.41
453 454 1.448013 GTAACCCCGCTCTCTGCAC 60.448 63.158 0.00 0.00 43.06 4.57
454 455 2.656069 TAACCCCGCTCTCTGCACC 61.656 63.158 0.00 0.00 43.06 5.01
456 457 4.463879 CCCCGCTCTCTGCACCAG 62.464 72.222 0.00 0.00 43.06 4.00
457 458 4.463879 CCCGCTCTCTGCACCAGG 62.464 72.222 0.00 0.00 43.06 4.45
458 459 3.699894 CCGCTCTCTGCACCAGGT 61.700 66.667 0.00 0.00 43.06 4.00
459 460 2.125753 CGCTCTCTGCACCAGGTC 60.126 66.667 0.00 0.00 43.06 3.85
460 461 2.267324 GCTCTCTGCACCAGGTCC 59.733 66.667 0.00 0.00 42.31 4.46
461 462 2.587247 GCTCTCTGCACCAGGTCCA 61.587 63.158 0.00 0.00 42.31 4.02
462 463 1.908340 GCTCTCTGCACCAGGTCCAT 61.908 60.000 0.00 0.00 42.31 3.41
463 464 0.617413 CTCTCTGCACCAGGTCCATT 59.383 55.000 0.00 0.00 31.51 3.16
464 465 0.615331 TCTCTGCACCAGGTCCATTC 59.385 55.000 0.00 0.00 31.51 2.67
465 466 0.325933 CTCTGCACCAGGTCCATTCA 59.674 55.000 0.00 0.00 31.51 2.57
466 467 0.994247 TCTGCACCAGGTCCATTCAT 59.006 50.000 0.00 0.00 31.51 2.57
467 468 1.100510 CTGCACCAGGTCCATTCATG 58.899 55.000 0.00 0.00 0.00 3.07
468 469 0.966875 TGCACCAGGTCCATTCATGC 60.967 55.000 0.00 0.00 0.00 4.06
469 470 0.966875 GCACCAGGTCCATTCATGCA 60.967 55.000 0.00 0.00 0.00 3.96
470 471 1.100510 CACCAGGTCCATTCATGCAG 58.899 55.000 0.00 0.00 0.00 4.41
471 472 0.994247 ACCAGGTCCATTCATGCAGA 59.006 50.000 0.00 0.00 0.00 4.26
472 473 1.567649 ACCAGGTCCATTCATGCAGAT 59.432 47.619 0.00 0.00 0.00 2.90
473 474 2.779430 ACCAGGTCCATTCATGCAGATA 59.221 45.455 0.00 0.00 0.00 1.98
474 475 3.396946 ACCAGGTCCATTCATGCAGATAT 59.603 43.478 0.00 0.00 0.00 1.63
475 476 4.598807 ACCAGGTCCATTCATGCAGATATA 59.401 41.667 0.00 0.00 0.00 0.86
476 477 5.252397 ACCAGGTCCATTCATGCAGATATAT 59.748 40.000 0.00 0.00 0.00 0.86
477 478 6.444816 ACCAGGTCCATTCATGCAGATATATA 59.555 38.462 0.00 0.00 0.00 0.86
478 479 7.128418 ACCAGGTCCATTCATGCAGATATATAT 59.872 37.037 0.00 0.00 0.00 0.86
479 480 7.997223 CCAGGTCCATTCATGCAGATATATATT 59.003 37.037 0.00 0.00 0.00 1.28
504 505 6.783892 TTAAGAATGCAAAATTCAGCAACC 57.216 33.333 8.58 4.56 44.88 3.77
505 506 3.319755 AGAATGCAAAATTCAGCAACCG 58.680 40.909 8.58 0.00 44.88 4.44
506 507 3.005684 AGAATGCAAAATTCAGCAACCGA 59.994 39.130 8.58 0.00 44.88 4.69
507 508 2.879002 TGCAAAATTCAGCAACCGAA 57.121 40.000 2.60 0.00 37.90 4.30
508 509 2.468831 TGCAAAATTCAGCAACCGAAC 58.531 42.857 2.60 0.00 37.90 3.95
509 510 2.159184 TGCAAAATTCAGCAACCGAACA 60.159 40.909 2.60 0.00 37.90 3.18
510 511 2.863137 GCAAAATTCAGCAACCGAACAA 59.137 40.909 0.00 0.00 0.00 2.83
511 512 3.302415 GCAAAATTCAGCAACCGAACAAC 60.302 43.478 0.00 0.00 0.00 3.32
512 513 3.791973 AAATTCAGCAACCGAACAACA 57.208 38.095 0.00 0.00 0.00 3.33
513 514 4.320608 AAATTCAGCAACCGAACAACAT 57.679 36.364 0.00 0.00 0.00 2.71
514 515 4.320608 AATTCAGCAACCGAACAACATT 57.679 36.364 0.00 0.00 0.00 2.71
515 516 2.772568 TCAGCAACCGAACAACATTG 57.227 45.000 0.00 0.00 0.00 2.82
516 517 1.336440 TCAGCAACCGAACAACATTGG 59.664 47.619 0.00 0.00 0.00 3.16
517 518 0.031994 AGCAACCGAACAACATTGGC 59.968 50.000 0.00 0.00 0.00 4.52
518 519 0.943835 GCAACCGAACAACATTGGCC 60.944 55.000 0.00 0.00 0.00 5.36
519 520 0.673437 CAACCGAACAACATTGGCCT 59.327 50.000 3.32 0.00 0.00 5.19
520 521 0.673437 AACCGAACAACATTGGCCTG 59.327 50.000 3.32 0.00 0.00 4.85
521 522 1.178534 ACCGAACAACATTGGCCTGG 61.179 55.000 3.32 0.00 0.00 4.45
522 523 0.893270 CCGAACAACATTGGCCTGGA 60.893 55.000 3.32 0.00 0.00 3.86
523 524 0.958091 CGAACAACATTGGCCTGGAA 59.042 50.000 3.32 0.00 0.00 3.53
524 525 1.339610 CGAACAACATTGGCCTGGAAA 59.660 47.619 3.32 0.00 0.00 3.13
525 526 2.029110 CGAACAACATTGGCCTGGAAAT 60.029 45.455 3.32 0.00 0.00 2.17
526 527 3.192422 CGAACAACATTGGCCTGGAAATA 59.808 43.478 3.32 0.00 0.00 1.40
527 528 4.321601 CGAACAACATTGGCCTGGAAATAA 60.322 41.667 3.32 0.00 0.00 1.40
528 529 5.546526 GAACAACATTGGCCTGGAAATAAA 58.453 37.500 3.32 0.00 0.00 1.40
529 530 5.559148 ACAACATTGGCCTGGAAATAAAA 57.441 34.783 3.32 0.00 0.00 1.52
530 531 5.304778 ACAACATTGGCCTGGAAATAAAAC 58.695 37.500 3.32 0.00 0.00 2.43
531 532 5.163258 ACAACATTGGCCTGGAAATAAAACA 60.163 36.000 3.32 0.00 0.00 2.83
532 533 5.559148 ACATTGGCCTGGAAATAAAACAA 57.441 34.783 3.32 0.00 0.00 2.83
533 534 5.934781 ACATTGGCCTGGAAATAAAACAAA 58.065 33.333 3.32 0.00 0.00 2.83
534 535 6.360618 ACATTGGCCTGGAAATAAAACAAAA 58.639 32.000 3.32 0.00 0.00 2.44
535 536 6.830838 ACATTGGCCTGGAAATAAAACAAAAA 59.169 30.769 3.32 0.00 0.00 1.94
536 537 6.934048 TTGGCCTGGAAATAAAACAAAAAG 57.066 33.333 3.32 0.00 0.00 2.27
537 538 4.819088 TGGCCTGGAAATAAAACAAAAAGC 59.181 37.500 3.32 0.00 0.00 3.51
538 539 4.819088 GGCCTGGAAATAAAACAAAAAGCA 59.181 37.500 0.00 0.00 0.00 3.91
539 540 5.298026 GGCCTGGAAATAAAACAAAAAGCAA 59.702 36.000 0.00 0.00 0.00 3.91
540 541 6.183360 GGCCTGGAAATAAAACAAAAAGCAAA 60.183 34.615 0.00 0.00 0.00 3.68
541 542 6.690957 GCCTGGAAATAAAACAAAAAGCAAAC 59.309 34.615 0.00 0.00 0.00 2.93
542 543 7.192913 CCTGGAAATAAAACAAAAAGCAAACC 58.807 34.615 0.00 0.00 0.00 3.27
543 544 7.089770 TGGAAATAAAACAAAAAGCAAACCC 57.910 32.000 0.00 0.00 0.00 4.11
544 545 6.183360 TGGAAATAAAACAAAAAGCAAACCCG 60.183 34.615 0.00 0.00 0.00 5.28
545 546 6.037281 GGAAATAAAACAAAAAGCAAACCCGA 59.963 34.615 0.00 0.00 0.00 5.14
546 547 6.986904 AATAAAACAAAAAGCAAACCCGAA 57.013 29.167 0.00 0.00 0.00 4.30
547 548 4.937696 AAAACAAAAAGCAAACCCGAAG 57.062 36.364 0.00 0.00 0.00 3.79
548 549 1.934589 ACAAAAAGCAAACCCGAAGC 58.065 45.000 0.00 0.00 0.00 3.86
549 550 1.480545 ACAAAAAGCAAACCCGAAGCT 59.519 42.857 0.00 0.00 41.03 3.74
550 551 2.691011 ACAAAAAGCAAACCCGAAGCTA 59.309 40.909 0.00 0.00 37.70 3.32
551 552 3.049912 CAAAAAGCAAACCCGAAGCTAC 58.950 45.455 0.00 0.00 37.70 3.58
552 553 1.975660 AAAGCAAACCCGAAGCTACA 58.024 45.000 0.00 0.00 37.70 2.74
553 554 2.200373 AAGCAAACCCGAAGCTACAT 57.800 45.000 0.00 0.00 37.70 2.29
554 555 1.453155 AGCAAACCCGAAGCTACATG 58.547 50.000 0.00 0.00 36.73 3.21
555 556 0.179163 GCAAACCCGAAGCTACATGC 60.179 55.000 0.00 0.00 43.29 4.06
556 557 0.451783 CAAACCCGAAGCTACATGCC 59.548 55.000 0.00 0.00 44.23 4.40
557 558 0.328258 AAACCCGAAGCTACATGCCT 59.672 50.000 0.00 0.00 44.23 4.75
558 559 0.328258 AACCCGAAGCTACATGCCTT 59.672 50.000 0.00 0.00 44.23 4.35
559 560 0.392998 ACCCGAAGCTACATGCCTTG 60.393 55.000 0.00 0.00 44.23 3.61
560 561 1.718757 CCCGAAGCTACATGCCTTGC 61.719 60.000 0.00 0.00 44.23 4.01
561 562 1.349627 CGAAGCTACATGCCTTGCG 59.650 57.895 0.00 0.00 44.23 4.85
562 563 1.083806 CGAAGCTACATGCCTTGCGA 61.084 55.000 0.00 0.00 44.23 5.10
563 564 0.375106 GAAGCTACATGCCTTGCGAC 59.625 55.000 0.00 0.00 44.23 5.19
564 565 0.321564 AAGCTACATGCCTTGCGACA 60.322 50.000 0.00 0.00 44.23 4.35
565 566 0.742281 AGCTACATGCCTTGCGACAG 60.742 55.000 0.00 0.00 44.23 3.51
566 567 1.021390 GCTACATGCCTTGCGACAGT 61.021 55.000 0.00 0.00 35.15 3.55
567 568 1.739035 GCTACATGCCTTGCGACAGTA 60.739 52.381 0.00 0.00 35.15 2.74
568 569 2.616960 CTACATGCCTTGCGACAGTAA 58.383 47.619 0.00 0.00 0.00 2.24
569 570 1.156736 ACATGCCTTGCGACAGTAAC 58.843 50.000 0.00 0.00 0.00 2.50
570 571 1.270839 ACATGCCTTGCGACAGTAACT 60.271 47.619 0.00 0.00 0.00 2.24
571 572 1.394917 CATGCCTTGCGACAGTAACTC 59.605 52.381 0.00 0.00 0.00 3.01
572 573 0.320421 TGCCTTGCGACAGTAACTCC 60.320 55.000 0.00 0.00 0.00 3.85
573 574 0.320421 GCCTTGCGACAGTAACTCCA 60.320 55.000 0.00 0.00 0.00 3.86
574 575 1.429463 CCTTGCGACAGTAACTCCAC 58.571 55.000 0.00 0.00 0.00 4.02
575 576 1.000955 CCTTGCGACAGTAACTCCACT 59.999 52.381 0.00 0.00 0.00 4.00
576 577 2.230508 CCTTGCGACAGTAACTCCACTA 59.769 50.000 0.00 0.00 0.00 2.74
577 578 3.502920 CTTGCGACAGTAACTCCACTAG 58.497 50.000 0.00 0.00 0.00 2.57
578 579 2.786777 TGCGACAGTAACTCCACTAGA 58.213 47.619 0.00 0.00 0.00 2.43
579 580 3.353557 TGCGACAGTAACTCCACTAGAT 58.646 45.455 0.00 0.00 0.00 1.98
580 581 4.520179 TGCGACAGTAACTCCACTAGATA 58.480 43.478 0.00 0.00 0.00 1.98
581 582 4.945543 TGCGACAGTAACTCCACTAGATAA 59.054 41.667 0.00 0.00 0.00 1.75
582 583 5.163683 TGCGACAGTAACTCCACTAGATAAC 60.164 44.000 0.00 0.00 0.00 1.89
583 584 5.732810 GCGACAGTAACTCCACTAGATAACC 60.733 48.000 0.00 0.00 0.00 2.85
584 585 5.356190 CGACAGTAACTCCACTAGATAACCA 59.644 44.000 0.00 0.00 0.00 3.67
585 586 6.527057 ACAGTAACTCCACTAGATAACCAC 57.473 41.667 0.00 0.00 0.00 4.16
586 587 6.254522 ACAGTAACTCCACTAGATAACCACT 58.745 40.000 0.00 0.00 0.00 4.00
587 588 7.408543 ACAGTAACTCCACTAGATAACCACTA 58.591 38.462 0.00 0.00 0.00 2.74
588 589 7.892241 ACAGTAACTCCACTAGATAACCACTAA 59.108 37.037 0.00 0.00 0.00 2.24
589 590 8.189460 CAGTAACTCCACTAGATAACCACTAAC 58.811 40.741 0.00 0.00 0.00 2.34
590 591 6.541934 AACTCCACTAGATAACCACTAACC 57.458 41.667 0.00 0.00 0.00 2.85
591 592 4.961099 ACTCCACTAGATAACCACTAACCC 59.039 45.833 0.00 0.00 0.00 4.11
648 649 1.447317 CCGTGTGCTCAGTTTTGCCT 61.447 55.000 0.00 0.00 0.00 4.75
656 657 2.555757 GCTCAGTTTTGCCTTCAGATGT 59.444 45.455 0.00 0.00 0.00 3.06
666 667 2.730090 GCCTTCAGATGTGAATTGTGCG 60.730 50.000 5.65 0.00 41.96 5.34
675 676 2.192624 GTGAATTGTGCGCAGTTTTGT 58.807 42.857 12.22 0.00 0.00 2.83
695 696 2.126071 CTAGTCCGTGTGCACCGG 60.126 66.667 29.72 29.72 46.83 5.28
763 764 1.785353 GCCCTTACAGGTGGGACCAA 61.785 60.000 1.75 0.00 46.15 3.67
775 776 2.343758 GACCAAGCGGCAGAGACA 59.656 61.111 1.45 0.00 34.57 3.41
1079 1138 1.285950 CTGTCTTCGTCTGTCCGCA 59.714 57.895 0.00 0.00 0.00 5.69
1144 1204 2.165167 ACCAGAATCGTCCGTTCTACA 58.835 47.619 4.89 0.00 34.32 2.74
1220 1280 3.129988 GGATCTTTGAGCAATGGGTTGAG 59.870 47.826 0.00 0.00 37.53 3.02
1815 2095 3.527665 AGGTTAATGGGCCAACTACATCT 59.472 43.478 11.89 0.00 0.00 2.90
2254 2538 0.750850 TAACCGCTAGGACAGATGGC 59.249 55.000 0.00 0.00 41.02 4.40
2256 2540 1.050988 ACCGCTAGGACAGATGGCAT 61.051 55.000 0.00 0.00 41.02 4.40
2295 2603 5.155905 AGGGAAGGAAGGTATACATAGTGG 58.844 45.833 5.01 0.00 0.00 4.00
2440 2748 2.617276 GGTTTAGGGTTAGAGTGGCACC 60.617 54.545 15.27 5.99 0.00 5.01
2537 2854 2.024414 CACCCCCTCCGATTTTCATTC 58.976 52.381 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.758554 TGGTTGCTTCAATAAAGGAGAGC 59.241 43.478 0.00 0.00 36.60 4.09
25 26 0.617413 ACAGCCCAGAGGTCAAGATG 59.383 55.000 0.00 0.00 34.57 2.90
31 32 1.376553 GAGCAACAGCCCAGAGGTC 60.377 63.158 0.00 0.00 34.57 3.85
57 58 3.350219 TGATGGTGCCCTTACTCTTTC 57.650 47.619 0.00 0.00 0.00 2.62
112 113 8.093307 TCTTGAGGCACATTAATTTTTGCATTA 58.907 29.630 13.03 3.27 36.66 1.90
113 114 6.935771 TCTTGAGGCACATTAATTTTTGCATT 59.064 30.769 13.03 3.79 36.66 3.56
114 115 6.369615 GTCTTGAGGCACATTAATTTTTGCAT 59.630 34.615 13.03 7.71 36.66 3.96
115 116 5.695816 GTCTTGAGGCACATTAATTTTTGCA 59.304 36.000 13.03 0.00 36.66 4.08
116 117 5.120674 GGTCTTGAGGCACATTAATTTTTGC 59.879 40.000 5.29 5.29 0.00 3.68
117 118 6.458210 AGGTCTTGAGGCACATTAATTTTTG 58.542 36.000 0.00 0.00 0.00 2.44
118 119 6.670695 AGGTCTTGAGGCACATTAATTTTT 57.329 33.333 0.00 0.00 0.00 1.94
119 120 7.397192 ACATAGGTCTTGAGGCACATTAATTTT 59.603 33.333 0.00 0.00 0.00 1.82
120 121 6.891908 ACATAGGTCTTGAGGCACATTAATTT 59.108 34.615 0.00 0.00 0.00 1.82
121 122 6.319658 CACATAGGTCTTGAGGCACATTAATT 59.680 38.462 0.00 0.00 0.00 1.40
122 123 5.824624 CACATAGGTCTTGAGGCACATTAAT 59.175 40.000 0.00 0.00 0.00 1.40
123 124 5.185454 CACATAGGTCTTGAGGCACATTAA 58.815 41.667 0.00 0.00 0.00 1.40
124 125 4.769688 CACATAGGTCTTGAGGCACATTA 58.230 43.478 0.00 0.00 0.00 1.90
125 126 3.614092 CACATAGGTCTTGAGGCACATT 58.386 45.455 0.00 0.00 0.00 2.71
126 127 2.681976 GCACATAGGTCTTGAGGCACAT 60.682 50.000 0.00 0.00 0.00 3.21
127 128 1.339055 GCACATAGGTCTTGAGGCACA 60.339 52.381 0.00 0.00 0.00 4.57
128 129 1.339055 TGCACATAGGTCTTGAGGCAC 60.339 52.381 0.00 0.00 0.00 5.01
129 130 0.983467 TGCACATAGGTCTTGAGGCA 59.017 50.000 0.00 0.00 0.00 4.75
130 131 1.065854 AGTGCACATAGGTCTTGAGGC 60.066 52.381 21.04 0.00 0.00 4.70
131 132 3.005554 CAAGTGCACATAGGTCTTGAGG 58.994 50.000 21.04 0.00 38.06 3.86
132 133 3.668447 ACAAGTGCACATAGGTCTTGAG 58.332 45.455 21.04 0.00 38.82 3.02
133 134 3.557054 GGACAAGTGCACATAGGTCTTGA 60.557 47.826 21.04 0.00 38.82 3.02
134 135 2.744202 GGACAAGTGCACATAGGTCTTG 59.256 50.000 21.04 14.74 40.54 3.02
135 136 2.371841 TGGACAAGTGCACATAGGTCTT 59.628 45.455 21.04 0.00 0.00 3.01
136 137 1.977854 TGGACAAGTGCACATAGGTCT 59.022 47.619 21.04 0.00 0.00 3.85
137 138 2.472695 TGGACAAGTGCACATAGGTC 57.527 50.000 21.04 18.43 0.00 3.85
145 146 1.278985 CCTCCATAGTGGACAAGTGCA 59.721 52.381 0.00 0.00 42.67 4.57
146 147 1.279271 ACCTCCATAGTGGACAAGTGC 59.721 52.381 0.00 0.00 42.67 4.40
147 148 2.936993 GCACCTCCATAGTGGACAAGTG 60.937 54.545 11.75 11.75 42.67 3.16
148 149 1.279271 GCACCTCCATAGTGGACAAGT 59.721 52.381 0.00 0.00 42.67 3.16
149 150 1.278985 TGCACCTCCATAGTGGACAAG 59.721 52.381 0.00 0.00 42.67 3.16
150 151 1.357137 TGCACCTCCATAGTGGACAA 58.643 50.000 0.00 0.00 42.67 3.18
151 152 1.583556 ATGCACCTCCATAGTGGACA 58.416 50.000 0.00 0.00 42.67 4.02
152 153 2.717639 AATGCACCTCCATAGTGGAC 57.282 50.000 0.00 0.00 42.67 4.02
153 154 3.737559 AAAATGCACCTCCATAGTGGA 57.262 42.857 0.00 0.00 45.98 4.02
154 155 5.380043 AGATAAAATGCACCTCCATAGTGG 58.620 41.667 0.00 0.00 39.43 4.00
155 156 8.345565 GTTTAGATAAAATGCACCTCCATAGTG 58.654 37.037 0.00 0.00 38.30 2.74
156 157 7.502561 GGTTTAGATAAAATGCACCTCCATAGT 59.497 37.037 0.00 0.00 0.00 2.12
157 158 7.307989 CGGTTTAGATAAAATGCACCTCCATAG 60.308 40.741 0.00 0.00 0.00 2.23
158 159 6.485313 CGGTTTAGATAAAATGCACCTCCATA 59.515 38.462 0.00 0.00 0.00 2.74
159 160 5.299279 CGGTTTAGATAAAATGCACCTCCAT 59.701 40.000 0.00 0.00 0.00 3.41
160 161 4.638421 CGGTTTAGATAAAATGCACCTCCA 59.362 41.667 0.00 0.00 0.00 3.86
161 162 4.497507 GCGGTTTAGATAAAATGCACCTCC 60.498 45.833 0.00 0.00 33.73 4.30
162 163 4.335594 AGCGGTTTAGATAAAATGCACCTC 59.664 41.667 0.00 0.00 35.13 3.85
163 164 4.270008 AGCGGTTTAGATAAAATGCACCT 58.730 39.130 0.00 0.00 35.13 4.00
164 165 4.632538 AGCGGTTTAGATAAAATGCACC 57.367 40.909 0.00 0.00 35.13 5.01
165 166 5.227184 CGAAAGCGGTTTAGATAAAATGCAC 59.773 40.000 13.36 0.00 35.13 4.57
166 167 5.106475 ACGAAAGCGGTTTAGATAAAATGCA 60.106 36.000 23.88 0.00 43.17 3.96
167 168 5.329493 ACGAAAGCGGTTTAGATAAAATGC 58.671 37.500 23.88 3.07 43.17 3.56
168 169 6.772078 AGACGAAAGCGGTTTAGATAAAATG 58.228 36.000 23.88 4.74 43.17 2.32
169 170 6.980051 AGACGAAAGCGGTTTAGATAAAAT 57.020 33.333 23.88 3.18 43.17 1.82
170 171 6.595794 CAAGACGAAAGCGGTTTAGATAAAA 58.404 36.000 23.88 0.00 43.17 1.52
171 172 5.390145 GCAAGACGAAAGCGGTTTAGATAAA 60.390 40.000 23.88 0.00 43.17 1.40
172 173 4.092383 GCAAGACGAAAGCGGTTTAGATAA 59.908 41.667 23.88 0.00 43.17 1.75
173 174 3.615496 GCAAGACGAAAGCGGTTTAGATA 59.385 43.478 23.88 0.00 43.17 1.98
174 175 2.415512 GCAAGACGAAAGCGGTTTAGAT 59.584 45.455 23.88 10.96 43.17 1.98
175 176 1.796459 GCAAGACGAAAGCGGTTTAGA 59.204 47.619 23.88 0.00 43.17 2.10
176 177 1.136057 GGCAAGACGAAAGCGGTTTAG 60.136 52.381 13.36 15.42 43.17 1.85
177 178 0.869730 GGCAAGACGAAAGCGGTTTA 59.130 50.000 13.36 0.00 43.17 2.01
178 179 1.652563 GGCAAGACGAAAGCGGTTT 59.347 52.632 13.24 13.24 43.17 3.27
179 180 2.604174 CGGCAAGACGAAAGCGGTT 61.604 57.895 0.00 0.00 43.17 4.44
180 181 3.041940 CGGCAAGACGAAAGCGGT 61.042 61.111 0.00 0.00 43.17 5.68
181 182 2.604174 AACGGCAAGACGAAAGCGG 61.604 57.895 0.66 0.00 43.17 5.52
182 183 1.438710 CAACGGCAAGACGAAAGCG 60.439 57.895 0.66 0.00 44.79 4.68
183 184 1.082104 CCAACGGCAAGACGAAAGC 60.082 57.895 0.66 0.00 37.61 3.51
184 185 0.512952 CTCCAACGGCAAGACGAAAG 59.487 55.000 0.66 0.00 37.61 2.62
185 186 0.105224 TCTCCAACGGCAAGACGAAA 59.895 50.000 0.66 0.00 37.61 3.46
186 187 0.320374 ATCTCCAACGGCAAGACGAA 59.680 50.000 0.66 0.00 37.61 3.85
187 188 1.179152 TATCTCCAACGGCAAGACGA 58.821 50.000 0.66 0.00 37.61 4.20
188 189 2.004583 TTATCTCCAACGGCAAGACG 57.995 50.000 0.00 0.00 40.31 4.18
189 190 3.127030 CCTTTTATCTCCAACGGCAAGAC 59.873 47.826 0.00 0.00 0.00 3.01
190 191 3.008594 TCCTTTTATCTCCAACGGCAAGA 59.991 43.478 0.00 0.00 0.00 3.02
191 192 3.343617 TCCTTTTATCTCCAACGGCAAG 58.656 45.455 0.00 0.00 0.00 4.01
192 193 3.426787 TCCTTTTATCTCCAACGGCAA 57.573 42.857 0.00 0.00 0.00 4.52
193 194 3.078837 GTTCCTTTTATCTCCAACGGCA 58.921 45.455 0.00 0.00 0.00 5.69
194 195 3.344515 AGTTCCTTTTATCTCCAACGGC 58.655 45.455 0.00 0.00 0.00 5.68
195 196 4.392138 GTGAGTTCCTTTTATCTCCAACGG 59.608 45.833 0.00 0.00 0.00 4.44
196 197 4.392138 GGTGAGTTCCTTTTATCTCCAACG 59.608 45.833 0.00 0.00 0.00 4.10
197 198 5.561679 AGGTGAGTTCCTTTTATCTCCAAC 58.438 41.667 0.00 0.00 33.52 3.77
198 199 5.843019 AGGTGAGTTCCTTTTATCTCCAA 57.157 39.130 0.00 0.00 33.52 3.53
199 200 6.261435 TCTAGGTGAGTTCCTTTTATCTCCA 58.739 40.000 0.00 0.00 38.86 3.86
200 201 6.793505 TCTAGGTGAGTTCCTTTTATCTCC 57.206 41.667 0.00 0.00 38.86 3.71
201 202 8.068892 TCTTCTAGGTGAGTTCCTTTTATCTC 57.931 38.462 0.00 0.00 38.86 2.75
202 203 8.437274 TTCTTCTAGGTGAGTTCCTTTTATCT 57.563 34.615 0.00 0.00 38.86 1.98
203 204 9.157104 CTTTCTTCTAGGTGAGTTCCTTTTATC 57.843 37.037 0.00 0.00 38.86 1.75
204 205 8.103935 CCTTTCTTCTAGGTGAGTTCCTTTTAT 58.896 37.037 0.00 0.00 38.86 1.40
205 206 7.291651 TCCTTTCTTCTAGGTGAGTTCCTTTTA 59.708 37.037 0.00 0.00 38.86 1.52
206 207 6.101296 TCCTTTCTTCTAGGTGAGTTCCTTTT 59.899 38.462 0.00 0.00 38.86 2.27
207 208 5.607171 TCCTTTCTTCTAGGTGAGTTCCTTT 59.393 40.000 0.00 0.00 38.86 3.11
208 209 5.012251 GTCCTTTCTTCTAGGTGAGTTCCTT 59.988 44.000 0.00 0.00 38.86 3.36
209 210 4.528987 GTCCTTTCTTCTAGGTGAGTTCCT 59.471 45.833 0.00 0.00 41.20 3.36
210 211 4.528987 AGTCCTTTCTTCTAGGTGAGTTCC 59.471 45.833 0.00 0.00 34.29 3.62
211 212 5.336929 GGAGTCCTTTCTTCTAGGTGAGTTC 60.337 48.000 0.41 0.00 34.29 3.01
212 213 4.528987 GGAGTCCTTTCTTCTAGGTGAGTT 59.471 45.833 0.41 0.00 34.29 3.01
213 214 4.090819 GGAGTCCTTTCTTCTAGGTGAGT 58.909 47.826 0.41 0.00 34.29 3.41
214 215 4.090090 TGGAGTCCTTTCTTCTAGGTGAG 58.910 47.826 11.33 0.00 34.29 3.51
215 216 4.127918 TGGAGTCCTTTCTTCTAGGTGA 57.872 45.455 11.33 0.00 34.29 4.02
216 217 4.891992 TTGGAGTCCTTTCTTCTAGGTG 57.108 45.455 11.33 0.00 34.29 4.00
217 218 4.323868 GCATTGGAGTCCTTTCTTCTAGGT 60.324 45.833 11.33 0.00 34.29 3.08
218 219 4.080638 AGCATTGGAGTCCTTTCTTCTAGG 60.081 45.833 11.33 0.00 0.00 3.02
219 220 5.096443 AGCATTGGAGTCCTTTCTTCTAG 57.904 43.478 11.33 0.00 0.00 2.43
220 221 5.395768 GCTAGCATTGGAGTCCTTTCTTCTA 60.396 44.000 10.63 3.95 0.00 2.10
221 222 4.625083 GCTAGCATTGGAGTCCTTTCTTCT 60.625 45.833 10.63 2.98 0.00 2.85
222 223 3.625313 GCTAGCATTGGAGTCCTTTCTTC 59.375 47.826 10.63 0.00 0.00 2.87
223 224 3.615155 GCTAGCATTGGAGTCCTTTCTT 58.385 45.455 10.63 0.00 0.00 2.52
224 225 2.092699 GGCTAGCATTGGAGTCCTTTCT 60.093 50.000 18.24 5.04 0.00 2.52
225 226 2.092699 AGGCTAGCATTGGAGTCCTTTC 60.093 50.000 18.24 0.00 0.00 2.62
226 227 1.918957 AGGCTAGCATTGGAGTCCTTT 59.081 47.619 18.24 0.00 0.00 3.11
227 228 1.589414 AGGCTAGCATTGGAGTCCTT 58.411 50.000 18.24 0.00 0.00 3.36
228 229 2.324541 CTAGGCTAGCATTGGAGTCCT 58.675 52.381 18.24 3.28 0.00 3.85
229 230 2.043227 ACTAGGCTAGCATTGGAGTCC 58.957 52.381 21.26 0.73 0.00 3.85
230 231 2.224161 CCACTAGGCTAGCATTGGAGTC 60.224 54.545 21.26 0.00 0.00 3.36
231 232 1.765314 CCACTAGGCTAGCATTGGAGT 59.235 52.381 21.26 7.29 0.00 3.85
232 233 1.071385 CCCACTAGGCTAGCATTGGAG 59.929 57.143 24.06 8.68 0.00 3.86
233 234 1.131638 CCCACTAGGCTAGCATTGGA 58.868 55.000 24.06 0.00 0.00 3.53
234 235 3.713902 CCCACTAGGCTAGCATTGG 57.286 57.895 21.26 19.54 0.00 3.16
245 246 0.687757 TGGTCTGCCTAGCCCACTAG 60.688 60.000 0.00 0.00 44.80 2.57
246 247 0.976073 GTGGTCTGCCTAGCCCACTA 60.976 60.000 0.61 0.00 35.27 2.74
247 248 2.122729 TGGTCTGCCTAGCCCACT 59.877 61.111 0.00 0.00 35.27 4.00
248 249 1.915078 ATGTGGTCTGCCTAGCCCAC 61.915 60.000 0.84 0.84 35.27 4.61
249 250 1.616327 ATGTGGTCTGCCTAGCCCA 60.616 57.895 0.00 0.00 35.27 5.36
250 251 1.147153 GATGTGGTCTGCCTAGCCC 59.853 63.158 0.00 0.00 35.27 5.19
251 252 0.253044 TTGATGTGGTCTGCCTAGCC 59.747 55.000 0.00 0.00 35.27 3.93
252 253 1.339055 TGTTGATGTGGTCTGCCTAGC 60.339 52.381 0.00 0.00 35.27 3.42
253 254 2.768253 TGTTGATGTGGTCTGCCTAG 57.232 50.000 0.00 0.00 35.27 3.02
254 255 3.264193 AGAATGTTGATGTGGTCTGCCTA 59.736 43.478 0.00 0.00 35.27 3.93
255 256 2.040813 AGAATGTTGATGTGGTCTGCCT 59.959 45.455 0.00 0.00 35.27 4.75
256 257 2.421424 GAGAATGTTGATGTGGTCTGCC 59.579 50.000 0.00 0.00 0.00 4.85
257 258 2.421424 GGAGAATGTTGATGTGGTCTGC 59.579 50.000 0.00 0.00 0.00 4.26
258 259 2.674852 CGGAGAATGTTGATGTGGTCTG 59.325 50.000 0.00 0.00 0.00 3.51
259 260 2.303022 ACGGAGAATGTTGATGTGGTCT 59.697 45.455 0.00 0.00 0.00 3.85
260 261 2.699954 ACGGAGAATGTTGATGTGGTC 58.300 47.619 0.00 0.00 0.00 4.02
261 262 2.859165 ACGGAGAATGTTGATGTGGT 57.141 45.000 0.00 0.00 0.00 4.16
262 263 4.229096 CAAAACGGAGAATGTTGATGTGG 58.771 43.478 0.00 0.00 0.00 4.17
263 264 4.023279 TCCAAAACGGAGAATGTTGATGTG 60.023 41.667 0.00 0.00 39.64 3.21
264 265 4.141287 TCCAAAACGGAGAATGTTGATGT 58.859 39.130 0.00 0.00 39.64 3.06
265 266 4.764679 TCCAAAACGGAGAATGTTGATG 57.235 40.909 0.00 0.00 39.64 3.07
277 278 4.380128 GGCTAACAACCTAATCCAAAACGG 60.380 45.833 0.00 0.00 0.00 4.44
278 279 4.670735 CGGCTAACAACCTAATCCAAAACG 60.671 45.833 0.00 0.00 0.00 3.60
279 280 4.216902 ACGGCTAACAACCTAATCCAAAAC 59.783 41.667 0.00 0.00 0.00 2.43
280 281 4.216687 CACGGCTAACAACCTAATCCAAAA 59.783 41.667 0.00 0.00 0.00 2.44
281 282 3.754323 CACGGCTAACAACCTAATCCAAA 59.246 43.478 0.00 0.00 0.00 3.28
282 283 3.244630 ACACGGCTAACAACCTAATCCAA 60.245 43.478 0.00 0.00 0.00 3.53
283 284 2.303600 ACACGGCTAACAACCTAATCCA 59.696 45.455 0.00 0.00 0.00 3.41
284 285 2.676342 CACACGGCTAACAACCTAATCC 59.324 50.000 0.00 0.00 0.00 3.01
285 286 3.332034 ACACACGGCTAACAACCTAATC 58.668 45.455 0.00 0.00 0.00 1.75
286 287 3.412237 ACACACGGCTAACAACCTAAT 57.588 42.857 0.00 0.00 0.00 1.73
287 288 2.914695 ACACACGGCTAACAACCTAA 57.085 45.000 0.00 0.00 0.00 2.69
288 289 2.758009 GAACACACGGCTAACAACCTA 58.242 47.619 0.00 0.00 0.00 3.08
289 290 1.589803 GAACACACGGCTAACAACCT 58.410 50.000 0.00 0.00 0.00 3.50
290 291 0.233848 CGAACACACGGCTAACAACC 59.766 55.000 0.00 0.00 0.00 3.77
291 292 0.932399 ACGAACACACGGCTAACAAC 59.068 50.000 0.00 0.00 37.61 3.32
292 293 2.505628 TACGAACACACGGCTAACAA 57.494 45.000 0.00 0.00 37.61 2.83
293 294 2.034432 TCTTACGAACACACGGCTAACA 59.966 45.455 0.00 0.00 37.61 2.41
294 295 2.664916 TCTTACGAACACACGGCTAAC 58.335 47.619 0.00 0.00 37.61 2.34
295 296 3.581024 ATCTTACGAACACACGGCTAA 57.419 42.857 0.00 0.00 37.61 3.09
296 297 4.156556 ACTTATCTTACGAACACACGGCTA 59.843 41.667 0.00 0.00 37.61 3.93
297 298 3.057033 ACTTATCTTACGAACACACGGCT 60.057 43.478 0.00 0.00 37.61 5.52
298 299 3.060363 CACTTATCTTACGAACACACGGC 59.940 47.826 0.00 0.00 37.61 5.68
299 300 3.611113 CCACTTATCTTACGAACACACGG 59.389 47.826 0.00 0.00 37.61 4.94
300 301 3.611113 CCCACTTATCTTACGAACACACG 59.389 47.826 0.00 0.00 39.31 4.49
301 302 3.370061 GCCCACTTATCTTACGAACACAC 59.630 47.826 0.00 0.00 0.00 3.82
302 303 3.259876 AGCCCACTTATCTTACGAACACA 59.740 43.478 0.00 0.00 0.00 3.72
303 304 3.858247 AGCCCACTTATCTTACGAACAC 58.142 45.455 0.00 0.00 0.00 3.32
304 305 4.546829 AAGCCCACTTATCTTACGAACA 57.453 40.909 0.00 0.00 33.13 3.18
305 306 4.032558 CGAAAGCCCACTTATCTTACGAAC 59.967 45.833 0.00 0.00 34.05 3.95
306 307 4.178540 CGAAAGCCCACTTATCTTACGAA 58.821 43.478 0.00 0.00 34.05 3.85
307 308 3.429822 CCGAAAGCCCACTTATCTTACGA 60.430 47.826 0.00 0.00 34.05 3.43
308 309 2.864343 CCGAAAGCCCACTTATCTTACG 59.136 50.000 0.00 0.00 34.05 3.18
309 310 4.133013 TCCGAAAGCCCACTTATCTTAC 57.867 45.455 0.00 0.00 34.05 2.34
310 311 4.829872 TTCCGAAAGCCCACTTATCTTA 57.170 40.909 0.00 0.00 34.05 2.10
311 312 3.713826 TTCCGAAAGCCCACTTATCTT 57.286 42.857 0.00 0.00 34.05 2.40
312 313 3.713826 TTTCCGAAAGCCCACTTATCT 57.286 42.857 0.00 0.00 34.05 1.98
313 314 3.489229 GCATTTCCGAAAGCCCACTTATC 60.489 47.826 0.00 0.00 34.05 1.75
314 315 2.427095 GCATTTCCGAAAGCCCACTTAT 59.573 45.455 0.00 0.00 34.05 1.73
315 316 1.816224 GCATTTCCGAAAGCCCACTTA 59.184 47.619 0.00 0.00 34.05 2.24
316 317 0.603065 GCATTTCCGAAAGCCCACTT 59.397 50.000 0.00 0.00 37.90 3.16
317 318 1.250840 GGCATTTCCGAAAGCCCACT 61.251 55.000 17.13 0.00 41.25 4.00
318 319 1.215382 GGCATTTCCGAAAGCCCAC 59.785 57.895 17.13 0.30 41.25 4.61
319 320 3.693411 GGCATTTCCGAAAGCCCA 58.307 55.556 17.13 0.00 41.25 5.36
321 322 1.329913 ATGGGGCATTTCCGAAAGCC 61.330 55.000 18.64 18.64 46.28 4.35
322 323 0.103026 GATGGGGCATTTCCGAAAGC 59.897 55.000 0.00 3.75 34.94 3.51
323 324 1.406539 CAGATGGGGCATTTCCGAAAG 59.593 52.381 0.00 0.00 34.94 2.62
324 325 1.272425 ACAGATGGGGCATTTCCGAAA 60.272 47.619 0.00 0.00 34.94 3.46
325 326 0.331278 ACAGATGGGGCATTTCCGAA 59.669 50.000 0.00 0.00 34.94 4.30
326 327 0.394216 CACAGATGGGGCATTTCCGA 60.394 55.000 0.00 0.00 34.94 4.55
327 328 0.680921 ACACAGATGGGGCATTTCCG 60.681 55.000 0.00 0.00 34.94 4.30
328 329 2.435372 TACACAGATGGGGCATTTCC 57.565 50.000 0.00 0.00 0.00 3.13
329 330 3.701040 ACAATACACAGATGGGGCATTTC 59.299 43.478 0.00 0.00 0.00 2.17
330 331 3.701040 GACAATACACAGATGGGGCATTT 59.299 43.478 0.00 0.00 0.00 2.32
331 332 3.290710 GACAATACACAGATGGGGCATT 58.709 45.455 0.00 0.00 0.00 3.56
332 333 2.423373 GGACAATACACAGATGGGGCAT 60.423 50.000 0.00 0.00 0.00 4.40
333 334 1.064758 GGACAATACACAGATGGGGCA 60.065 52.381 0.00 0.00 0.00 5.36
334 335 1.680338 GGACAATACACAGATGGGGC 58.320 55.000 0.00 0.00 0.00 5.80
335 336 1.563879 TGGGACAATACACAGATGGGG 59.436 52.381 0.00 0.00 31.92 4.96
350 351 1.816074 TCAGCGTGGTAAAATGGGAC 58.184 50.000 0.00 0.00 0.00 4.46
351 352 2.156098 GTTCAGCGTGGTAAAATGGGA 58.844 47.619 0.00 0.00 0.00 4.37
352 353 1.883275 TGTTCAGCGTGGTAAAATGGG 59.117 47.619 0.00 0.00 0.00 4.00
353 354 3.564511 CTTGTTCAGCGTGGTAAAATGG 58.435 45.455 0.00 0.00 0.00 3.16
354 355 3.564511 CCTTGTTCAGCGTGGTAAAATG 58.435 45.455 0.00 0.00 0.00 2.32
355 356 2.030274 GCCTTGTTCAGCGTGGTAAAAT 60.030 45.455 0.00 0.00 0.00 1.82
356 357 1.335496 GCCTTGTTCAGCGTGGTAAAA 59.665 47.619 0.00 0.00 0.00 1.52
357 358 0.948678 GCCTTGTTCAGCGTGGTAAA 59.051 50.000 0.00 0.00 0.00 2.01
358 359 0.887387 GGCCTTGTTCAGCGTGGTAA 60.887 55.000 0.00 0.00 0.00 2.85
359 360 1.302192 GGCCTTGTTCAGCGTGGTA 60.302 57.895 0.00 0.00 0.00 3.25
360 361 2.594592 GGCCTTGTTCAGCGTGGT 60.595 61.111 0.00 0.00 0.00 4.16
361 362 1.455383 AAAGGCCTTGTTCAGCGTGG 61.455 55.000 21.33 0.00 0.00 4.94
362 363 0.318107 CAAAGGCCTTGTTCAGCGTG 60.318 55.000 21.33 6.99 0.00 5.34
363 364 0.465460 TCAAAGGCCTTGTTCAGCGT 60.465 50.000 21.33 0.00 36.34 5.07
364 365 0.667993 TTCAAAGGCCTTGTTCAGCG 59.332 50.000 21.33 2.04 36.34 5.18
365 366 2.888834 TTTCAAAGGCCTTGTTCAGC 57.111 45.000 21.33 0.00 36.34 4.26
366 367 3.126073 GCTTTTCAAAGGCCTTGTTCAG 58.874 45.455 21.33 12.66 36.53 3.02
367 368 2.499289 TGCTTTTCAAAGGCCTTGTTCA 59.501 40.909 21.33 7.68 36.53 3.18
368 369 3.177997 TGCTTTTCAAAGGCCTTGTTC 57.822 42.857 21.33 5.07 36.53 3.18
369 370 3.625649 TTGCTTTTCAAAGGCCTTGTT 57.374 38.095 21.33 0.00 36.53 2.83
370 371 3.625649 TTTGCTTTTCAAAGGCCTTGT 57.374 38.095 21.33 6.56 39.58 3.16
371 372 4.318974 CGAATTTGCTTTTCAAAGGCCTTG 60.319 41.667 21.33 13.47 46.68 3.61
372 373 3.809279 CGAATTTGCTTTTCAAAGGCCTT 59.191 39.130 13.78 13.78 46.68 4.35
373 374 3.392882 CGAATTTGCTTTTCAAAGGCCT 58.607 40.909 0.00 0.00 46.68 5.19
374 375 2.480037 CCGAATTTGCTTTTCAAAGGCC 59.520 45.455 1.16 0.00 46.68 5.19
375 376 3.130633 ACCGAATTTGCTTTTCAAAGGC 58.869 40.909 0.00 0.00 46.68 4.35
376 377 4.445385 CAGACCGAATTTGCTTTTCAAAGG 59.555 41.667 1.55 0.00 46.68 3.11
377 378 4.084900 GCAGACCGAATTTGCTTTTCAAAG 60.085 41.667 0.00 0.00 46.68 2.77
378 379 5.545823 CGCAGACCGAATTTGCTTTTCAAA 61.546 41.667 0.00 0.00 43.30 2.69
379 380 3.380142 GCAGACCGAATTTGCTTTTCAA 58.620 40.909 0.00 0.00 35.05 2.69
380 381 2.604373 CGCAGACCGAATTTGCTTTTCA 60.604 45.455 0.00 0.00 40.02 2.69
381 382 1.978782 CGCAGACCGAATTTGCTTTTC 59.021 47.619 0.00 0.00 40.02 2.29
382 383 1.336755 ACGCAGACCGAATTTGCTTTT 59.663 42.857 0.00 0.00 41.02 2.27
383 384 0.951558 ACGCAGACCGAATTTGCTTT 59.048 45.000 0.00 0.00 41.02 3.51
384 385 0.238289 CACGCAGACCGAATTTGCTT 59.762 50.000 0.00 0.00 41.02 3.91
385 386 1.868997 CACGCAGACCGAATTTGCT 59.131 52.632 0.00 0.00 41.02 3.91
386 387 1.797537 GCACGCAGACCGAATTTGC 60.798 57.895 0.00 0.00 41.02 3.68
387 388 0.238289 AAGCACGCAGACCGAATTTG 59.762 50.000 0.00 0.00 41.02 2.32
388 389 0.517316 GAAGCACGCAGACCGAATTT 59.483 50.000 0.00 0.00 41.02 1.82
389 390 1.626654 CGAAGCACGCAGACCGAATT 61.627 55.000 0.00 0.00 41.02 2.17
390 391 2.094659 CGAAGCACGCAGACCGAAT 61.095 57.895 0.00 0.00 41.02 3.34
391 392 2.733218 CGAAGCACGCAGACCGAA 60.733 61.111 0.00 0.00 41.02 4.30
392 393 3.891586 GACGAAGCACGCAGACCGA 62.892 63.158 0.00 0.00 46.94 4.69
393 394 3.470567 GACGAAGCACGCAGACCG 61.471 66.667 0.00 0.00 46.94 4.79
394 395 2.355837 TGACGAAGCACGCAGACC 60.356 61.111 0.00 0.00 46.94 3.85
395 396 0.386858 TAGTGACGAAGCACGCAGAC 60.387 55.000 0.00 0.00 46.94 3.51
396 397 0.312729 TTAGTGACGAAGCACGCAGA 59.687 50.000 0.00 0.00 46.94 4.26
397 398 1.136690 TTTAGTGACGAAGCACGCAG 58.863 50.000 0.00 0.00 46.94 5.18
398 399 1.525197 CTTTTAGTGACGAAGCACGCA 59.475 47.619 0.00 0.95 46.94 5.24
399 400 1.525619 ACTTTTAGTGACGAAGCACGC 59.474 47.619 0.00 0.00 46.94 5.34
400 401 3.854286 AACTTTTAGTGACGAAGCACG 57.146 42.857 0.00 1.99 43.42 5.34
423 424 3.156293 GCGGGGTTACCTCCTTTAAAAA 58.844 45.455 0.00 0.00 36.97 1.94
424 425 2.376181 AGCGGGGTTACCTCCTTTAAAA 59.624 45.455 0.00 0.00 36.97 1.52
425 426 1.987368 AGCGGGGTTACCTCCTTTAAA 59.013 47.619 0.00 0.00 36.97 1.52
426 427 1.556451 GAGCGGGGTTACCTCCTTTAA 59.444 52.381 0.00 0.00 36.97 1.52
427 428 1.197812 GAGCGGGGTTACCTCCTTTA 58.802 55.000 0.00 0.00 36.97 1.85
428 429 0.546988 AGAGCGGGGTTACCTCCTTT 60.547 55.000 0.00 0.00 36.97 3.11
429 430 0.976590 GAGAGCGGGGTTACCTCCTT 60.977 60.000 0.00 0.00 36.97 3.36
430 431 1.381463 GAGAGCGGGGTTACCTCCT 60.381 63.158 0.00 0.00 36.97 3.69
431 432 1.381463 AGAGAGCGGGGTTACCTCC 60.381 63.158 0.00 0.00 36.97 4.30
432 433 1.817209 CAGAGAGCGGGGTTACCTC 59.183 63.158 0.00 0.00 36.97 3.85
433 434 2.359967 GCAGAGAGCGGGGTTACCT 61.360 63.158 0.00 0.00 36.97 3.08
434 435 2.187163 GCAGAGAGCGGGGTTACC 59.813 66.667 0.00 0.00 0.00 2.85
443 444 1.908340 ATGGACCTGGTGCAGAGAGC 61.908 60.000 25.18 0.00 37.30 4.09
444 445 0.617413 AATGGACCTGGTGCAGAGAG 59.383 55.000 25.18 0.00 37.30 3.20
445 446 0.615331 GAATGGACCTGGTGCAGAGA 59.385 55.000 25.18 2.76 37.30 3.10
446 447 0.325933 TGAATGGACCTGGTGCAGAG 59.674 55.000 25.18 0.00 37.30 3.35
447 448 0.994247 ATGAATGGACCTGGTGCAGA 59.006 50.000 25.18 12.67 37.30 4.26
448 449 1.100510 CATGAATGGACCTGGTGCAG 58.899 55.000 25.18 8.53 37.30 4.41
449 450 0.966875 GCATGAATGGACCTGGTGCA 60.967 55.000 23.55 23.55 38.41 4.57
450 451 0.966875 TGCATGAATGGACCTGGTGC 60.967 55.000 11.87 11.87 0.00 5.01
451 452 1.100510 CTGCATGAATGGACCTGGTG 58.899 55.000 2.82 0.00 0.00 4.17
452 453 0.994247 TCTGCATGAATGGACCTGGT 59.006 50.000 0.00 0.00 0.00 4.00
453 454 2.359981 ATCTGCATGAATGGACCTGG 57.640 50.000 0.00 0.00 0.00 4.45
454 455 8.975663 AATATATATCTGCATGAATGGACCTG 57.024 34.615 0.00 0.00 0.00 4.00
478 479 8.934825 GGTTGCTGAATTTTGCATTCTTAATAA 58.065 29.630 7.05 0.00 39.07 1.40
479 480 7.275341 CGGTTGCTGAATTTTGCATTCTTAATA 59.725 33.333 7.05 0.00 39.07 0.98
480 481 6.091169 CGGTTGCTGAATTTTGCATTCTTAAT 59.909 34.615 7.05 0.00 39.07 1.40
481 482 5.404968 CGGTTGCTGAATTTTGCATTCTTAA 59.595 36.000 7.05 0.00 39.07 1.85
482 483 4.922692 CGGTTGCTGAATTTTGCATTCTTA 59.077 37.500 7.05 0.00 39.07 2.10
483 484 3.742369 CGGTTGCTGAATTTTGCATTCTT 59.258 39.130 7.05 0.00 39.07 2.52
484 485 3.005684 TCGGTTGCTGAATTTTGCATTCT 59.994 39.130 7.05 0.00 39.07 2.40
485 486 3.316283 TCGGTTGCTGAATTTTGCATTC 58.684 40.909 7.05 0.00 39.07 2.67
486 487 3.383620 TCGGTTGCTGAATTTTGCATT 57.616 38.095 7.05 0.00 39.07 3.56
487 488 3.059166 GTTCGGTTGCTGAATTTTGCAT 58.941 40.909 7.05 0.00 39.07 3.96
488 489 2.159184 TGTTCGGTTGCTGAATTTTGCA 60.159 40.909 2.76 2.76 37.42 4.08
489 490 2.468831 TGTTCGGTTGCTGAATTTTGC 58.531 42.857 0.00 0.00 31.07 3.68
490 491 3.862267 TGTTGTTCGGTTGCTGAATTTTG 59.138 39.130 0.00 0.00 31.07 2.44
491 492 4.116747 TGTTGTTCGGTTGCTGAATTTT 57.883 36.364 0.00 0.00 31.07 1.82
492 493 3.791973 TGTTGTTCGGTTGCTGAATTT 57.208 38.095 0.00 0.00 31.07 1.82
493 494 4.050553 CAATGTTGTTCGGTTGCTGAATT 58.949 39.130 0.00 0.00 31.07 2.17
494 495 3.552684 CCAATGTTGTTCGGTTGCTGAAT 60.553 43.478 0.00 0.00 31.07 2.57
495 496 2.223688 CCAATGTTGTTCGGTTGCTGAA 60.224 45.455 0.00 0.00 0.00 3.02
496 497 1.336440 CCAATGTTGTTCGGTTGCTGA 59.664 47.619 0.00 0.00 0.00 4.26
497 498 1.769733 CCAATGTTGTTCGGTTGCTG 58.230 50.000 0.00 0.00 0.00 4.41
498 499 0.031994 GCCAATGTTGTTCGGTTGCT 59.968 50.000 0.00 0.00 0.00 3.91
499 500 0.943835 GGCCAATGTTGTTCGGTTGC 60.944 55.000 0.00 0.00 0.00 4.17
500 501 0.673437 AGGCCAATGTTGTTCGGTTG 59.327 50.000 5.01 0.00 0.00 3.77
501 502 0.673437 CAGGCCAATGTTGTTCGGTT 59.327 50.000 5.01 0.00 0.00 4.44
502 503 1.178534 CCAGGCCAATGTTGTTCGGT 61.179 55.000 5.01 0.00 0.00 4.69
503 504 0.893270 TCCAGGCCAATGTTGTTCGG 60.893 55.000 5.01 0.00 0.00 4.30
504 505 0.958091 TTCCAGGCCAATGTTGTTCG 59.042 50.000 5.01 0.00 0.00 3.95
505 506 3.683365 ATTTCCAGGCCAATGTTGTTC 57.317 42.857 5.01 0.00 0.00 3.18
506 507 5.559148 TTTATTTCCAGGCCAATGTTGTT 57.441 34.783 5.01 0.00 0.00 2.83
507 508 5.163258 TGTTTTATTTCCAGGCCAATGTTGT 60.163 36.000 5.01 0.00 0.00 3.32
508 509 5.303971 TGTTTTATTTCCAGGCCAATGTTG 58.696 37.500 5.01 0.00 0.00 3.33
509 510 5.559148 TGTTTTATTTCCAGGCCAATGTT 57.441 34.783 5.01 0.00 0.00 2.71
510 511 5.559148 TTGTTTTATTTCCAGGCCAATGT 57.441 34.783 5.01 0.00 0.00 2.71
511 512 6.874288 TTTTGTTTTATTTCCAGGCCAATG 57.126 33.333 5.01 0.00 0.00 2.82
512 513 6.016360 GCTTTTTGTTTTATTTCCAGGCCAAT 60.016 34.615 5.01 0.00 0.00 3.16
513 514 5.298026 GCTTTTTGTTTTATTTCCAGGCCAA 59.702 36.000 5.01 0.00 0.00 4.52
514 515 4.819088 GCTTTTTGTTTTATTTCCAGGCCA 59.181 37.500 5.01 0.00 0.00 5.36
515 516 4.819088 TGCTTTTTGTTTTATTTCCAGGCC 59.181 37.500 0.00 0.00 0.00 5.19
516 517 6.370433 TTGCTTTTTGTTTTATTTCCAGGC 57.630 33.333 0.00 0.00 0.00 4.85
517 518 7.192913 GGTTTGCTTTTTGTTTTATTTCCAGG 58.807 34.615 0.00 0.00 0.00 4.45
518 519 7.192913 GGGTTTGCTTTTTGTTTTATTTCCAG 58.807 34.615 0.00 0.00 0.00 3.86
519 520 6.183360 CGGGTTTGCTTTTTGTTTTATTTCCA 60.183 34.615 0.00 0.00 0.00 3.53
520 521 6.037281 TCGGGTTTGCTTTTTGTTTTATTTCC 59.963 34.615 0.00 0.00 0.00 3.13
521 522 7.006187 TCGGGTTTGCTTTTTGTTTTATTTC 57.994 32.000 0.00 0.00 0.00 2.17
522 523 6.986904 TCGGGTTTGCTTTTTGTTTTATTT 57.013 29.167 0.00 0.00 0.00 1.40
523 524 6.457663 GCTTCGGGTTTGCTTTTTGTTTTATT 60.458 34.615 0.00 0.00 0.00 1.40
524 525 5.007234 GCTTCGGGTTTGCTTTTTGTTTTAT 59.993 36.000 0.00 0.00 0.00 1.40
525 526 4.330347 GCTTCGGGTTTGCTTTTTGTTTTA 59.670 37.500 0.00 0.00 0.00 1.52
526 527 3.126171 GCTTCGGGTTTGCTTTTTGTTTT 59.874 39.130 0.00 0.00 0.00 2.43
527 528 2.675844 GCTTCGGGTTTGCTTTTTGTTT 59.324 40.909 0.00 0.00 0.00 2.83
528 529 2.093711 AGCTTCGGGTTTGCTTTTTGTT 60.094 40.909 0.00 0.00 32.61 2.83
529 530 1.480545 AGCTTCGGGTTTGCTTTTTGT 59.519 42.857 0.00 0.00 32.61 2.83
530 531 2.223537 AGCTTCGGGTTTGCTTTTTG 57.776 45.000 0.00 0.00 32.61 2.44
531 532 2.691011 TGTAGCTTCGGGTTTGCTTTTT 59.309 40.909 0.00 0.00 38.15 1.94
532 533 2.303175 TGTAGCTTCGGGTTTGCTTTT 58.697 42.857 0.00 0.00 38.15 2.27
533 534 1.975660 TGTAGCTTCGGGTTTGCTTT 58.024 45.000 0.00 0.00 38.15 3.51
534 535 1.812571 CATGTAGCTTCGGGTTTGCTT 59.187 47.619 0.00 0.00 38.15 3.91
535 536 1.453155 CATGTAGCTTCGGGTTTGCT 58.547 50.000 0.00 0.00 40.43 3.91
536 537 0.179163 GCATGTAGCTTCGGGTTTGC 60.179 55.000 0.00 0.00 41.15 3.68
537 538 0.451783 GGCATGTAGCTTCGGGTTTG 59.548 55.000 0.00 0.00 44.79 2.93
538 539 0.328258 AGGCATGTAGCTTCGGGTTT 59.672 50.000 0.00 0.00 44.79 3.27
539 540 0.328258 AAGGCATGTAGCTTCGGGTT 59.672 50.000 0.00 0.00 44.79 4.11
540 541 0.392998 CAAGGCATGTAGCTTCGGGT 60.393 55.000 0.00 0.00 44.79 5.28
541 542 1.718757 GCAAGGCATGTAGCTTCGGG 61.719 60.000 0.00 0.00 44.79 5.14
542 543 1.723870 GCAAGGCATGTAGCTTCGG 59.276 57.895 0.00 0.00 44.79 4.30
543 544 1.083806 TCGCAAGGCATGTAGCTTCG 61.084 55.000 0.00 0.00 44.79 3.79
544 545 0.375106 GTCGCAAGGCATGTAGCTTC 59.625 55.000 0.00 0.00 45.31 3.86
545 546 2.471255 GTCGCAAGGCATGTAGCTT 58.529 52.632 0.00 0.00 45.31 3.74
546 547 4.208632 GTCGCAAGGCATGTAGCT 57.791 55.556 0.00 0.00 45.31 3.32
555 556 1.000955 AGTGGAGTTACTGTCGCAAGG 59.999 52.381 0.00 0.00 38.47 3.61
556 557 2.440539 AGTGGAGTTACTGTCGCAAG 57.559 50.000 0.00 0.00 0.00 4.01
557 558 3.151554 TCTAGTGGAGTTACTGTCGCAA 58.848 45.455 0.00 0.00 32.19 4.85
558 559 2.786777 TCTAGTGGAGTTACTGTCGCA 58.213 47.619 0.00 0.00 32.19 5.10
559 560 5.272397 GTTATCTAGTGGAGTTACTGTCGC 58.728 45.833 0.00 0.00 32.19 5.19
560 561 5.356190 TGGTTATCTAGTGGAGTTACTGTCG 59.644 44.000 0.00 0.00 32.19 4.35
561 562 6.377712 AGTGGTTATCTAGTGGAGTTACTGTC 59.622 42.308 0.00 0.00 32.19 3.51
562 563 6.254522 AGTGGTTATCTAGTGGAGTTACTGT 58.745 40.000 0.00 0.00 32.19 3.55
563 564 6.777213 AGTGGTTATCTAGTGGAGTTACTG 57.223 41.667 0.00 0.00 32.19 2.74
564 565 7.341512 GGTTAGTGGTTATCTAGTGGAGTTACT 59.658 40.741 0.00 0.00 34.71 2.24
565 566 7.417229 GGGTTAGTGGTTATCTAGTGGAGTTAC 60.417 44.444 0.00 0.00 0.00 2.50
566 567 6.608808 GGGTTAGTGGTTATCTAGTGGAGTTA 59.391 42.308 0.00 0.00 0.00 2.24
567 568 5.424573 GGGTTAGTGGTTATCTAGTGGAGTT 59.575 44.000 0.00 0.00 0.00 3.01
568 569 4.961099 GGGTTAGTGGTTATCTAGTGGAGT 59.039 45.833 0.00 0.00 0.00 3.85
569 570 5.209659 AGGGTTAGTGGTTATCTAGTGGAG 58.790 45.833 0.00 0.00 0.00 3.86
570 571 5.216665 AGGGTTAGTGGTTATCTAGTGGA 57.783 43.478 0.00 0.00 0.00 4.02
571 572 6.553852 ACATAGGGTTAGTGGTTATCTAGTGG 59.446 42.308 0.00 0.00 0.00 4.00
572 573 7.598759 ACATAGGGTTAGTGGTTATCTAGTG 57.401 40.000 0.00 0.00 0.00 2.74
573 574 7.070821 CCAACATAGGGTTAGTGGTTATCTAGT 59.929 40.741 0.00 0.00 37.72 2.57
574 575 7.442656 CCAACATAGGGTTAGTGGTTATCTAG 58.557 42.308 0.00 0.00 37.72 2.43
575 576 6.328148 CCCAACATAGGGTTAGTGGTTATCTA 59.672 42.308 0.00 0.00 44.24 1.98
576 577 5.132144 CCCAACATAGGGTTAGTGGTTATCT 59.868 44.000 0.00 0.00 44.24 1.98
577 578 5.374071 CCCAACATAGGGTTAGTGGTTATC 58.626 45.833 0.00 0.00 44.24 1.75
578 579 5.382664 CCCAACATAGGGTTAGTGGTTAT 57.617 43.478 0.00 0.00 44.24 1.89
579 580 4.847990 CCCAACATAGGGTTAGTGGTTA 57.152 45.455 0.00 0.00 44.24 2.85
580 581 3.732048 CCCAACATAGGGTTAGTGGTT 57.268 47.619 0.00 0.00 44.24 3.67
590 591 7.926018 GCAAAAGGATAATTAACCCAACATAGG 59.074 37.037 8.09 0.00 0.00 2.57
591 592 7.926018 GGCAAAAGGATAATTAACCCAACATAG 59.074 37.037 8.09 0.00 0.00 2.23
648 649 1.878734 TGCGCACAATTCACATCTGAA 59.121 42.857 5.66 0.00 40.77 3.02
656 657 2.458951 GACAAAACTGCGCACAATTCA 58.541 42.857 5.66 0.00 0.00 2.57
666 667 1.270678 ACGGACTAGGGACAAAACTGC 60.271 52.381 0.00 0.00 0.00 4.40
675 676 2.280552 GGTGCACACGGACTAGGGA 61.281 63.158 20.43 0.00 33.21 4.20
775 776 4.618227 GCAACGGTCTGAATAAAATTGGCT 60.618 41.667 0.00 0.00 0.00 4.75
829 830 0.601046 CAACGGCTCTCTGCTCAACA 60.601 55.000 0.00 0.00 42.39 3.33
1144 1204 1.452651 CCCCATTCTCGCTGCACAT 60.453 57.895 0.00 0.00 0.00 3.21
1220 1280 1.603678 CCTGCATGAACACCAAACAGC 60.604 52.381 0.00 0.00 33.12 4.40
1795 2075 7.582667 AATTAGATGTAGTTGGCCCATTAAC 57.417 36.000 0.00 0.00 0.00 2.01
1796 2076 7.942341 CCTAATTAGATGTAGTTGGCCCATTAA 59.058 37.037 14.28 0.00 0.00 1.40
2145 2429 2.562298 TGTGCATTTTCCACCCTTCATC 59.438 45.455 0.00 0.00 32.30 2.92
2254 2538 3.054434 TCCCTACCCATGTCAAAGTCATG 60.054 47.826 0.00 0.00 41.34 3.07
2256 2540 2.626785 TCCCTACCCATGTCAAAGTCA 58.373 47.619 0.00 0.00 0.00 3.41
2295 2603 0.665835 TGTGCAAACATTCACGGTCC 59.334 50.000 0.00 0.00 36.06 4.46
2388 2696 4.832266 ACTCTAACCAAAATCATGTGGCAA 59.168 37.500 0.10 0.00 38.58 4.52
2496 2813 3.072915 TGAGAAGCCCTCTGTTTCATTCA 59.927 43.478 5.47 0.00 42.44 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.