Multiple sequence alignment - TraesCS1D01G044300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G044300 chr1D 100.000 6215 0 0 1 6215 23243979 23250193 0.000000e+00 11478.0
1 TraesCS1D01G044300 chr1D 91.269 985 74 8 4006 4979 24100625 24101608 0.000000e+00 1332.0
2 TraesCS1D01G044300 chr1D 89.050 758 67 8 2863 3611 24097532 24098282 0.000000e+00 926.0
3 TraesCS1D01G044300 chr1D 86.684 383 29 11 4983 5349 24101703 24102079 7.500000e-109 405.0
4 TraesCS1D01G044300 chr1D 80.674 564 39 26 766 1304 24095473 24095991 2.120000e-99 374.0
5 TraesCS1D01G044300 chr1D 85.511 352 38 8 203 552 24076941 24077281 7.660000e-94 355.0
6 TraesCS1D01G044300 chr1D 91.593 226 13 2 2481 2706 24097316 24097535 2.180000e-79 307.0
7 TraesCS1D01G044300 chr1D 84.874 238 25 7 548 774 24094836 24095073 4.850000e-56 230.0
8 TraesCS1D01G044300 chr1B 91.106 2350 88 49 374 2706 39592181 39589936 0.000000e+00 3070.0
9 TraesCS1D01G044300 chr1B 93.284 1072 68 3 3911 4979 39589068 39587998 0.000000e+00 1578.0
10 TraesCS1D01G044300 chr1B 89.229 752 63 11 2863 3612 39589939 39589204 0.000000e+00 924.0
11 TraesCS1D01G044300 chr1B 85.307 456 43 12 4983 5422 39587920 39587473 3.420000e-122 449.0
12 TraesCS1D01G044300 chr1B 80.556 108 19 2 2126 2233 39590961 39590856 1.440000e-11 82.4
13 TraesCS1D01G044300 chr1A 88.233 2133 128 50 618 2706 24336341 24338394 0.000000e+00 2435.0
14 TraesCS1D01G044300 chr1A 92.830 1060 72 3 3911 4966 24339243 24340302 0.000000e+00 1533.0
15 TraesCS1D01G044300 chr1A 94.454 613 25 3 4973 5577 24340417 24341028 0.000000e+00 935.0
16 TraesCS1D01G044300 chr1A 88.220 747 67 16 2863 3609 24338391 24339116 0.000000e+00 872.0
17 TraesCS1D01G044300 chr1A 88.235 357 23 8 203 551 24335919 24336264 5.800000e-110 409.0
18 TraesCS1D01G044300 chr1A 80.435 138 24 2 2097 2233 24337325 24337460 1.100000e-17 102.0
19 TraesCS1D01G044300 chr2A 91.511 589 48 2 5579 6165 764123942 764123354 0.000000e+00 809.0
20 TraesCS1D01G044300 chr6A 90.411 584 54 2 5583 6165 203766256 203766838 0.000000e+00 767.0
21 TraesCS1D01G044300 chr6A 81.111 270 40 8 3611 3874 573866691 573866427 8.170000e-49 206.0
22 TraesCS1D01G044300 chr4B 89.626 588 59 2 5577 6163 445649055 445648469 0.000000e+00 747.0
23 TraesCS1D01G044300 chr4B 88.007 592 68 3 5573 6163 59851327 59851916 0.000000e+00 697.0
24 TraesCS1D01G044300 chr4B 82.812 256 37 4 3614 3865 554561500 554561752 8.110000e-54 222.0
25 TraesCS1D01G044300 chr2B 89.340 591 61 2 5577 6165 446046983 446046393 0.000000e+00 741.0
26 TraesCS1D01G044300 chr2B 87.458 590 71 3 5577 6165 417775149 417774562 0.000000e+00 676.0
27 TraesCS1D01G044300 chr2B 88.889 171 17 2 2704 2874 41136281 41136113 6.310000e-50 209.0
28 TraesCS1D01G044300 chr2B 81.550 271 33 13 3612 3872 177133941 177134204 2.270000e-49 207.0
29 TraesCS1D01G044300 chr2B 85.882 85 10 2 1930 2013 142448749 142448832 8.580000e-14 89.8
30 TraesCS1D01G044300 chr5A 88.305 590 56 7 5578 6165 236866918 236866340 0.000000e+00 695.0
31 TraesCS1D01G044300 chr5A 87.043 602 69 6 5574 6167 564564165 564563565 0.000000e+00 671.0
32 TraesCS1D01G044300 chr5A 82.759 261 34 8 3611 3864 313313489 313313745 8.110000e-54 222.0
33 TraesCS1D01G044300 chr5A 80.488 205 34 6 1831 2031 1813170 1813372 1.080000e-32 152.0
34 TraesCS1D01G044300 chr5A 84.286 70 10 1 1944 2012 687222015 687222084 4.020000e-07 67.6
35 TraesCS1D01G044300 chr3B 86.935 597 73 5 5574 6168 49145632 49146225 0.000000e+00 665.0
36 TraesCS1D01G044300 chr3B 80.909 110 21 0 1923 2032 665245243 665245134 3.090000e-13 87.9
37 TraesCS1D01G044300 chr3D 93.452 168 11 0 2703 2870 375693827 375693994 3.720000e-62 250.0
38 TraesCS1D01G044300 chr3D 89.349 169 18 0 2701 2869 87926165 87925997 4.880000e-51 213.0
39 TraesCS1D01G044300 chr3D 89.759 166 17 0 2704 2869 553037914 553037749 4.880000e-51 213.0
40 TraesCS1D01G044300 chr3D 81.749 263 38 7 3612 3867 435686362 435686103 1.760000e-50 211.0
41 TraesCS1D01G044300 chr3D 82.126 207 34 3 1826 2031 461952565 461952769 2.300000e-39 174.0
42 TraesCS1D01G044300 chr6D 84.556 259 27 8 3615 3866 218386898 218386646 1.730000e-60 244.0
43 TraesCS1D01G044300 chr6D 90.798 163 15 0 2704 2866 467802433 467802271 1.050000e-52 219.0
44 TraesCS1D01G044300 chr6B 83.398 259 30 8 3615 3866 343040702 343040954 1.740000e-55 228.0
45 TraesCS1D01G044300 chr7B 90.588 170 15 1 2700 2869 176002996 176002828 2.250000e-54 224.0
46 TraesCS1D01G044300 chr7B 85.455 55 4 4 4015 4067 89788237 89788185 3.000000e-03 54.7
47 TraesCS1D01G044300 chr7B 85.455 55 4 4 4015 4067 89919248 89919196 3.000000e-03 54.7
48 TraesCS1D01G044300 chr7D 82.558 258 34 8 3615 3865 460516420 460516167 3.770000e-52 217.0
49 TraesCS1D01G044300 chr7D 80.682 88 12 5 4015 4099 128747609 128747524 5.200000e-06 63.9
50 TraesCS1D01G044300 chr7D 79.545 88 13 5 4015 4099 128143121 128143036 2.420000e-04 58.4
51 TraesCS1D01G044300 chr7D 79.545 88 13 5 4015 4099 128479810 128479725 2.420000e-04 58.4
52 TraesCS1D01G044300 chr5B 89.881 168 16 1 2705 2871 407219393 407219560 1.360000e-51 215.0
53 TraesCS1D01G044300 chr5B 100.000 29 0 0 76 104 377133074 377133102 3.000000e-03 54.7
54 TraesCS1D01G044300 chr7A 81.992 261 36 9 3615 3867 34052374 34052631 1.760000e-50 211.0
55 TraesCS1D01G044300 chr7A 89.697 165 17 0 2705 2869 494786829 494786993 1.760000e-50 211.0
56 TraesCS1D01G044300 chr7A 85.455 55 4 4 4015 4067 128775658 128775606 3.000000e-03 54.7
57 TraesCS1D01G044300 chr3A 81.702 235 34 8 2705 2934 77934632 77934402 2.960000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G044300 chr1D 23243979 23250193 6214 False 11478.000000 11478 100.000000 1 6215 1 chr1D.!!$F1 6214
1 TraesCS1D01G044300 chr1D 24094836 24102079 7243 False 595.666667 1332 87.357333 548 5349 6 chr1D.!!$F3 4801
2 TraesCS1D01G044300 chr1B 39587473 39592181 4708 True 1220.680000 3070 87.896400 374 5422 5 chr1B.!!$R1 5048
3 TraesCS1D01G044300 chr1A 24335919 24341028 5109 False 1047.666667 2435 88.734500 203 5577 6 chr1A.!!$F1 5374
4 TraesCS1D01G044300 chr2A 764123354 764123942 588 True 809.000000 809 91.511000 5579 6165 1 chr2A.!!$R1 586
5 TraesCS1D01G044300 chr6A 203766256 203766838 582 False 767.000000 767 90.411000 5583 6165 1 chr6A.!!$F1 582
6 TraesCS1D01G044300 chr4B 445648469 445649055 586 True 747.000000 747 89.626000 5577 6163 1 chr4B.!!$R1 586
7 TraesCS1D01G044300 chr4B 59851327 59851916 589 False 697.000000 697 88.007000 5573 6163 1 chr4B.!!$F1 590
8 TraesCS1D01G044300 chr2B 446046393 446046983 590 True 741.000000 741 89.340000 5577 6165 1 chr2B.!!$R3 588
9 TraesCS1D01G044300 chr2B 417774562 417775149 587 True 676.000000 676 87.458000 5577 6165 1 chr2B.!!$R2 588
10 TraesCS1D01G044300 chr5A 236866340 236866918 578 True 695.000000 695 88.305000 5578 6165 1 chr5A.!!$R1 587
11 TraesCS1D01G044300 chr5A 564563565 564564165 600 True 671.000000 671 87.043000 5574 6167 1 chr5A.!!$R2 593
12 TraesCS1D01G044300 chr3B 49145632 49146225 593 False 665.000000 665 86.935000 5574 6168 1 chr3B.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.038343 CCGGCTTTGGTGAAATGTGG 60.038 55.000 0.0 0.0 0.00 4.17 F
151 152 0.673437 CGGCTTTGGTGAAATGTGGT 59.327 50.000 0.0 0.0 0.00 4.16 F
741 805 0.877071 TCCGGTCGTACTCAACAGTC 59.123 55.000 0.0 0.0 33.62 3.51 F
1217 1720 1.760613 CCTGCCGGTTTATACCTCTCA 59.239 52.381 1.9 0.0 42.66 3.27 F
2556 3685 1.068083 CGGACAGGATCATCACGGG 59.932 63.158 0.0 0.0 0.00 5.28 F
3259 4397 0.038526 CCTACCGCTTCAACGTCACT 60.039 55.000 0.0 0.0 0.00 3.41 F
4693 8117 0.032952 TGCAGTACACGACCAAGTCC 59.967 55.000 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1077 1565 1.672030 CTCCACAATGGCAGCGTGA 60.672 57.895 17.84 6.04 37.47 4.35 R
1573 2254 3.028850 CGGGGTCATGACTAGAAGGTAA 58.971 50.000 24.50 0.00 0.00 2.85 R
2556 3685 1.453928 GGTAGCTGGCCATTCACCC 60.454 63.158 5.51 0.00 0.00 4.61 R
3134 4272 2.677836 GCCTGCATGAGTCGACATTTTA 59.322 45.455 19.50 0.00 0.00 1.52 R
3634 4781 0.109723 TGAAAGGTTGGACGAAGGGG 59.890 55.000 0.00 0.00 0.00 4.79 R
4813 8237 0.251165 TGTAGTTCCCAAAGCCCTGC 60.251 55.000 0.00 0.00 0.00 4.85 R
6194 9768 0.179234 TCCTTGACGGTTGCTTGTGA 59.821 50.000 0.00 0.00 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.190954 GCATGGACGGATAAAAAGTTTAGT 57.809 37.500 0.00 0.00 0.00 2.24
24 25 7.311364 GCATGGACGGATAAAAAGTTTAGTA 57.689 36.000 0.00 0.00 0.00 1.82
25 26 7.184779 GCATGGACGGATAAAAAGTTTAGTAC 58.815 38.462 0.00 0.00 0.00 2.73
26 27 7.677982 GCATGGACGGATAAAAAGTTTAGTACC 60.678 40.741 0.00 0.00 0.00 3.34
27 28 6.767456 TGGACGGATAAAAAGTTTAGTACCA 58.233 36.000 0.00 0.00 0.00 3.25
28 29 6.650390 TGGACGGATAAAAAGTTTAGTACCAC 59.350 38.462 0.00 0.00 0.00 4.16
29 30 6.092670 GGACGGATAAAAAGTTTAGTACCACC 59.907 42.308 0.00 0.00 0.00 4.61
30 31 6.772605 ACGGATAAAAAGTTTAGTACCACCT 58.227 36.000 0.00 0.00 0.00 4.00
31 32 6.652062 ACGGATAAAAAGTTTAGTACCACCTG 59.348 38.462 0.00 0.00 0.00 4.00
32 33 6.875195 CGGATAAAAAGTTTAGTACCACCTGA 59.125 38.462 0.00 0.00 0.00 3.86
33 34 7.148523 CGGATAAAAAGTTTAGTACCACCTGAC 60.149 40.741 0.00 0.00 0.00 3.51
34 35 7.662669 GGATAAAAAGTTTAGTACCACCTGACA 59.337 37.037 0.00 0.00 0.00 3.58
35 36 6.688637 AAAAAGTTTAGTACCACCTGACAC 57.311 37.500 0.00 0.00 0.00 3.67
36 37 3.655276 AGTTTAGTACCACCTGACACG 57.345 47.619 0.00 0.00 0.00 4.49
37 38 2.298163 AGTTTAGTACCACCTGACACGG 59.702 50.000 0.00 0.00 0.00 4.94
38 39 1.259609 TTAGTACCACCTGACACGGG 58.740 55.000 0.00 0.00 35.68 5.28
39 40 0.405198 TAGTACCACCTGACACGGGA 59.595 55.000 0.00 0.00 33.36 5.14
40 41 0.898789 AGTACCACCTGACACGGGAG 60.899 60.000 0.00 0.00 33.36 4.30
41 42 0.896940 GTACCACCTGACACGGGAGA 60.897 60.000 0.00 0.00 33.36 3.71
42 43 0.178955 TACCACCTGACACGGGAGAA 60.179 55.000 0.00 0.00 33.36 2.87
43 44 1.052124 ACCACCTGACACGGGAGAAA 61.052 55.000 0.00 0.00 33.36 2.52
44 45 0.107831 CCACCTGACACGGGAGAAAA 59.892 55.000 0.00 0.00 33.36 2.29
45 46 1.271379 CCACCTGACACGGGAGAAAAT 60.271 52.381 0.00 0.00 33.36 1.82
46 47 2.027561 CCACCTGACACGGGAGAAAATA 60.028 50.000 0.00 0.00 33.36 1.40
47 48 3.558321 CCACCTGACACGGGAGAAAATAA 60.558 47.826 0.00 0.00 33.36 1.40
48 49 4.261801 CACCTGACACGGGAGAAAATAAT 58.738 43.478 0.00 0.00 33.36 1.28
49 50 4.700213 CACCTGACACGGGAGAAAATAATT 59.300 41.667 0.00 0.00 33.36 1.40
50 51 4.941873 ACCTGACACGGGAGAAAATAATTC 59.058 41.667 0.00 0.00 33.36 2.17
51 52 5.186198 CCTGACACGGGAGAAAATAATTCT 58.814 41.667 0.00 0.00 29.82 2.40
52 53 6.070424 ACCTGACACGGGAGAAAATAATTCTA 60.070 38.462 0.00 0.00 33.36 2.10
53 54 6.992715 CCTGACACGGGAGAAAATAATTCTAT 59.007 38.462 0.00 0.00 29.82 1.98
54 55 8.148351 CCTGACACGGGAGAAAATAATTCTATA 58.852 37.037 0.00 0.00 29.82 1.31
55 56 9.542462 CTGACACGGGAGAAAATAATTCTATAA 57.458 33.333 0.00 0.00 0.00 0.98
56 57 9.542462 TGACACGGGAGAAAATAATTCTATAAG 57.458 33.333 0.00 0.00 0.00 1.73
57 58 9.760077 GACACGGGAGAAAATAATTCTATAAGA 57.240 33.333 0.00 0.00 0.00 2.10
89 90 7.131498 TGAAATTCAAATAAATGCACCTTGC 57.869 32.000 0.00 0.00 45.29 4.01
90 91 6.935771 TGAAATTCAAATAAATGCACCTTGCT 59.064 30.769 0.00 0.00 45.31 3.91
91 92 7.444792 TGAAATTCAAATAAATGCACCTTGCTT 59.555 29.630 0.00 0.00 45.31 3.91
92 93 7.748691 AATTCAAATAAATGCACCTTGCTTT 57.251 28.000 0.00 0.00 45.31 3.51
93 94 8.845413 AATTCAAATAAATGCACCTTGCTTTA 57.155 26.923 0.00 3.24 45.31 1.85
94 95 9.452287 AATTCAAATAAATGCACCTTGCTTTAT 57.548 25.926 0.00 5.15 45.31 1.40
95 96 8.845413 TTCAAATAAATGCACCTTGCTTTATT 57.155 26.923 15.23 15.23 45.31 1.40
96 97 9.935241 TTCAAATAAATGCACCTTGCTTTATTA 57.065 25.926 18.28 9.24 45.31 0.98
97 98 9.585099 TCAAATAAATGCACCTTGCTTTATTAG 57.415 29.630 18.28 5.24 45.31 1.73
98 99 9.369904 CAAATAAATGCACCTTGCTTTATTAGT 57.630 29.630 18.28 9.24 45.31 2.24
101 102 6.699575 AATGCACCTTGCTTTATTAGTAGG 57.300 37.500 0.00 0.00 45.31 3.18
102 103 5.174037 TGCACCTTGCTTTATTAGTAGGT 57.826 39.130 0.00 0.00 45.31 3.08
103 104 6.302535 TGCACCTTGCTTTATTAGTAGGTA 57.697 37.500 0.00 0.00 45.31 3.08
104 105 6.346096 TGCACCTTGCTTTATTAGTAGGTAG 58.654 40.000 0.00 0.00 45.31 3.18
105 106 6.155565 TGCACCTTGCTTTATTAGTAGGTAGA 59.844 38.462 0.00 0.00 45.31 2.59
106 107 6.479331 GCACCTTGCTTTATTAGTAGGTAGAC 59.521 42.308 0.00 0.00 40.96 2.59
107 108 7.553334 CACCTTGCTTTATTAGTAGGTAGACA 58.447 38.462 0.00 0.00 38.31 3.41
108 109 7.707035 CACCTTGCTTTATTAGTAGGTAGACAG 59.293 40.741 0.00 0.00 38.31 3.51
109 110 7.147707 ACCTTGCTTTATTAGTAGGTAGACAGG 60.148 40.741 0.00 0.00 38.47 4.00
110 111 7.147707 CCTTGCTTTATTAGTAGGTAGACAGGT 60.148 40.741 0.00 0.00 0.00 4.00
111 112 8.827832 TTGCTTTATTAGTAGGTAGACAGGTA 57.172 34.615 0.00 0.00 0.00 3.08
112 113 9.430399 TTGCTTTATTAGTAGGTAGACAGGTAT 57.570 33.333 0.00 0.00 0.00 2.73
124 125 7.953752 AGGTAGACAGGTATAATTAGTTCTGC 58.046 38.462 10.00 5.52 0.00 4.26
125 126 7.015389 AGGTAGACAGGTATAATTAGTTCTGCC 59.985 40.741 10.00 0.00 0.00 4.85
126 127 6.808321 AGACAGGTATAATTAGTTCTGCCA 57.192 37.500 10.00 0.00 0.00 4.92
127 128 7.195374 AGACAGGTATAATTAGTTCTGCCAA 57.805 36.000 10.00 0.00 0.00 4.52
128 129 7.806180 AGACAGGTATAATTAGTTCTGCCAAT 58.194 34.615 10.00 0.00 0.00 3.16
129 130 8.934697 AGACAGGTATAATTAGTTCTGCCAATA 58.065 33.333 10.00 0.00 0.00 1.90
130 131 9.555727 GACAGGTATAATTAGTTCTGCCAATAA 57.444 33.333 10.00 0.00 0.00 1.40
131 132 9.338622 ACAGGTATAATTAGTTCTGCCAATAAC 57.661 33.333 10.00 0.00 0.00 1.89
132 133 8.784043 CAGGTATAATTAGTTCTGCCAATAACC 58.216 37.037 0.00 0.00 0.00 2.85
133 134 7.660208 AGGTATAATTAGTTCTGCCAATAACCG 59.340 37.037 0.00 0.00 0.00 4.44
134 135 6.877611 ATAATTAGTTCTGCCAATAACCGG 57.122 37.500 0.00 0.00 0.00 5.28
141 142 2.272923 GCCAATAACCGGCTTTGGT 58.727 52.632 23.84 0.00 46.56 3.67
142 143 0.108851 GCCAATAACCGGCTTTGGTG 60.109 55.000 23.84 7.70 46.56 4.17
143 144 1.540267 CCAATAACCGGCTTTGGTGA 58.460 50.000 18.07 0.00 42.89 4.02
144 145 1.889829 CCAATAACCGGCTTTGGTGAA 59.110 47.619 18.07 0.00 42.89 3.18
145 146 2.297597 CCAATAACCGGCTTTGGTGAAA 59.702 45.455 18.07 0.00 42.89 2.69
146 147 3.056179 CCAATAACCGGCTTTGGTGAAAT 60.056 43.478 18.07 0.00 42.89 2.17
147 148 3.866883 ATAACCGGCTTTGGTGAAATG 57.133 42.857 0.00 0.00 42.89 2.32
148 149 1.408969 AACCGGCTTTGGTGAAATGT 58.591 45.000 0.00 0.00 42.89 2.71
149 150 0.673437 ACCGGCTTTGGTGAAATGTG 59.327 50.000 0.00 0.00 41.85 3.21
150 151 0.038343 CCGGCTTTGGTGAAATGTGG 60.038 55.000 0.00 0.00 0.00 4.17
151 152 0.673437 CGGCTTTGGTGAAATGTGGT 59.327 50.000 0.00 0.00 0.00 4.16
152 153 1.883275 CGGCTTTGGTGAAATGTGGTA 59.117 47.619 0.00 0.00 0.00 3.25
153 154 2.095263 CGGCTTTGGTGAAATGTGGTAG 60.095 50.000 0.00 0.00 0.00 3.18
154 155 2.352715 GGCTTTGGTGAAATGTGGTAGC 60.353 50.000 0.00 0.00 0.00 3.58
155 156 2.558359 GCTTTGGTGAAATGTGGTAGCT 59.442 45.455 0.00 0.00 0.00 3.32
156 157 3.366374 GCTTTGGTGAAATGTGGTAGCTC 60.366 47.826 0.00 0.00 0.00 4.09
157 158 3.788227 TTGGTGAAATGTGGTAGCTCT 57.212 42.857 0.00 0.00 0.00 4.09
158 159 3.788227 TGGTGAAATGTGGTAGCTCTT 57.212 42.857 0.00 0.00 0.00 2.85
159 160 4.098914 TGGTGAAATGTGGTAGCTCTTT 57.901 40.909 0.00 0.00 0.00 2.52
160 161 4.469657 TGGTGAAATGTGGTAGCTCTTTT 58.530 39.130 7.36 7.36 0.00 2.27
161 162 4.892934 TGGTGAAATGTGGTAGCTCTTTTT 59.107 37.500 0.00 3.37 0.00 1.94
179 180 4.537135 TTTTTAGCGGTGACTGATCTCT 57.463 40.909 0.00 0.00 0.00 3.10
180 181 3.510388 TTTAGCGGTGACTGATCTCTG 57.490 47.619 0.00 0.00 0.00 3.35
181 182 2.130272 TAGCGGTGACTGATCTCTGT 57.870 50.000 0.00 0.00 0.00 3.41
182 183 1.261480 AGCGGTGACTGATCTCTGTT 58.739 50.000 0.00 0.00 0.00 3.16
183 184 2.447443 AGCGGTGACTGATCTCTGTTA 58.553 47.619 0.00 0.00 0.00 2.41
184 185 2.425312 AGCGGTGACTGATCTCTGTTAG 59.575 50.000 0.00 0.00 0.00 2.34
185 186 2.164624 GCGGTGACTGATCTCTGTTAGT 59.835 50.000 0.00 0.00 0.00 2.24
186 187 3.732471 GCGGTGACTGATCTCTGTTAGTC 60.732 52.174 0.00 0.00 39.88 2.59
187 188 3.440522 CGGTGACTGATCTCTGTTAGTCA 59.559 47.826 7.11 7.11 45.08 3.41
192 193 7.888250 TGACTGATCTCTGTTAGTCATGTAT 57.112 36.000 7.11 0.00 43.14 2.29
193 194 7.710896 TGACTGATCTCTGTTAGTCATGTATG 58.289 38.462 7.11 0.00 43.14 2.39
194 195 7.048629 ACTGATCTCTGTTAGTCATGTATGG 57.951 40.000 0.00 0.00 0.00 2.74
195 196 6.836007 ACTGATCTCTGTTAGTCATGTATGGA 59.164 38.462 0.00 0.00 0.00 3.41
196 197 7.014134 ACTGATCTCTGTTAGTCATGTATGGAG 59.986 40.741 0.00 0.00 0.00 3.86
197 198 7.062957 TGATCTCTGTTAGTCATGTATGGAGA 58.937 38.462 0.00 0.00 0.00 3.71
198 199 7.561356 TGATCTCTGTTAGTCATGTATGGAGAA 59.439 37.037 0.00 0.00 32.34 2.87
199 200 7.718334 TCTCTGTTAGTCATGTATGGAGAAA 57.282 36.000 0.00 0.00 0.00 2.52
200 201 7.548097 TCTCTGTTAGTCATGTATGGAGAAAC 58.452 38.462 0.00 0.00 0.00 2.78
201 202 7.178451 TCTCTGTTAGTCATGTATGGAGAAACA 59.822 37.037 0.00 0.00 0.00 2.83
204 205 9.599866 CTGTTAGTCATGTATGGAGAAACATAA 57.400 33.333 0.00 0.00 35.29 1.90
214 215 9.461312 TGTATGGAGAAACATAATATATTGGGC 57.539 33.333 8.28 0.00 35.29 5.36
215 216 9.461312 GTATGGAGAAACATAATATATTGGGCA 57.539 33.333 8.28 0.00 35.29 5.36
234 237 7.759489 TGGGCAGGAATACACAATATAATTC 57.241 36.000 0.00 0.00 0.00 2.17
274 277 8.964533 ACATAATATACATGAGAGGGAAGACT 57.035 34.615 0.00 0.00 0.00 3.24
279 282 8.970859 ATATACATGAGAGGGAAGACTTTTTG 57.029 34.615 0.00 0.00 0.00 2.44
281 284 4.104738 ACATGAGAGGGAAGACTTTTTGGA 59.895 41.667 0.00 0.00 0.00 3.53
282 285 5.222213 ACATGAGAGGGAAGACTTTTTGGAT 60.222 40.000 0.00 0.00 0.00 3.41
283 286 4.911390 TGAGAGGGAAGACTTTTTGGATC 58.089 43.478 0.00 0.00 0.00 3.36
284 287 4.350816 TGAGAGGGAAGACTTTTTGGATCA 59.649 41.667 0.00 0.00 0.00 2.92
285 288 5.014544 TGAGAGGGAAGACTTTTTGGATCAT 59.985 40.000 0.00 0.00 0.00 2.45
335 338 2.857152 GTCGATGACAAGCAAGCTCTAG 59.143 50.000 0.00 0.00 32.09 2.43
354 357 2.853542 TTGCCCAGCAGTCCCAGA 60.854 61.111 0.00 0.00 40.61 3.86
372 375 3.001330 CCAGATAGAAAAGTAAAGGCGCG 59.999 47.826 0.00 0.00 0.00 6.86
388 391 1.613270 CGCGTTGCCTTGTTATTTCC 58.387 50.000 0.00 0.00 0.00 3.13
525 533 5.226978 CGTTGACATATAAATGCAAACGTGG 59.773 40.000 13.62 0.00 43.38 4.94
592 635 2.869801 CACTTCCTAAACAAGCACACGA 59.130 45.455 0.00 0.00 0.00 4.35
595 638 3.188159 TCCTAAACAAGCACACGAGTT 57.812 42.857 0.00 0.00 0.00 3.01
596 639 3.537580 TCCTAAACAAGCACACGAGTTT 58.462 40.909 0.00 0.00 37.82 2.66
597 640 4.695396 TCCTAAACAAGCACACGAGTTTA 58.305 39.130 0.00 0.00 35.90 2.01
598 641 4.508861 TCCTAAACAAGCACACGAGTTTAC 59.491 41.667 0.00 0.00 35.90 2.01
599 642 3.313274 AAACAAGCACACGAGTTTACG 57.687 42.857 0.00 0.00 32.88 3.18
600 643 1.214367 ACAAGCACACGAGTTTACGG 58.786 50.000 0.00 0.00 37.61 4.02
604 647 2.762745 AGCACACGAGTTTACGGAAAT 58.237 42.857 0.00 0.00 37.61 2.17
605 648 3.135994 AGCACACGAGTTTACGGAAATT 58.864 40.909 0.00 0.00 37.61 1.82
606 649 3.185797 AGCACACGAGTTTACGGAAATTC 59.814 43.478 5.57 5.57 37.61 2.17
613 656 5.306929 GAGTTTACGGAAATTCGATACGG 57.693 43.478 0.00 0.00 0.00 4.02
614 657 4.114794 AGTTTACGGAAATTCGATACGGG 58.885 43.478 0.00 0.00 0.00 5.28
615 658 3.799281 TTACGGAAATTCGATACGGGT 57.201 42.857 0.00 0.00 0.00 5.28
616 659 2.214387 ACGGAAATTCGATACGGGTC 57.786 50.000 0.00 0.00 0.00 4.46
620 669 3.671928 CGGAAATTCGATACGGGTCATAC 59.328 47.826 0.00 0.00 0.00 2.39
688 742 7.838079 TGGAATAAAATTAGCCAGCATATGT 57.162 32.000 4.29 0.00 0.00 2.29
689 743 8.932434 TGGAATAAAATTAGCCAGCATATGTA 57.068 30.769 4.29 0.00 0.00 2.29
690 744 9.532494 TGGAATAAAATTAGCCAGCATATGTAT 57.468 29.630 4.29 0.00 0.00 2.29
691 745 9.793252 GGAATAAAATTAGCCAGCATATGTATG 57.207 33.333 4.29 3.98 36.78 2.39
741 805 0.877071 TCCGGTCGTACTCAACAGTC 59.123 55.000 0.00 0.00 33.62 3.51
823 1296 5.179368 TGAAGCTAATCAAAACGTCCTTCTG 59.821 40.000 0.00 0.00 0.00 3.02
833 1308 2.706890 ACGTCCTTCTGTCTCTCTCTC 58.293 52.381 0.00 0.00 0.00 3.20
834 1309 2.304761 ACGTCCTTCTGTCTCTCTCTCT 59.695 50.000 0.00 0.00 0.00 3.10
835 1310 2.677836 CGTCCTTCTGTCTCTCTCTCTG 59.322 54.545 0.00 0.00 0.00 3.35
836 1311 3.686016 GTCCTTCTGTCTCTCTCTCTGT 58.314 50.000 0.00 0.00 0.00 3.41
837 1312 3.689649 GTCCTTCTGTCTCTCTCTCTGTC 59.310 52.174 0.00 0.00 0.00 3.51
838 1313 3.587061 TCCTTCTGTCTCTCTCTCTGTCT 59.413 47.826 0.00 0.00 0.00 3.41
839 1314 3.941483 CCTTCTGTCTCTCTCTCTGTCTC 59.059 52.174 0.00 0.00 0.00 3.36
840 1315 4.323792 CCTTCTGTCTCTCTCTCTGTCTCT 60.324 50.000 0.00 0.00 0.00 3.10
841 1316 4.471904 TCTGTCTCTCTCTCTGTCTCTC 57.528 50.000 0.00 0.00 0.00 3.20
842 1317 4.096681 TCTGTCTCTCTCTCTGTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
843 1318 4.160439 TCTGTCTCTCTCTCTGTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
844 1319 4.096681 TGTCTCTCTCTCTGTCTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
845 1320 4.160439 TGTCTCTCTCTCTGTCTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
846 1321 4.404073 GTCTCTCTCTCTGTCTCTCTCTCT 59.596 50.000 0.00 0.00 0.00 3.10
847 1322 5.594725 GTCTCTCTCTCTGTCTCTCTCTCTA 59.405 48.000 0.00 0.00 0.00 2.43
848 1323 6.266558 GTCTCTCTCTCTGTCTCTCTCTCTAT 59.733 46.154 0.00 0.00 0.00 1.98
849 1324 6.491745 TCTCTCTCTCTGTCTCTCTCTCTATC 59.508 46.154 0.00 0.00 0.00 2.08
850 1325 6.377080 TCTCTCTCTGTCTCTCTCTCTATCT 58.623 44.000 0.00 0.00 0.00 1.98
851 1326 7.526918 TCTCTCTCTGTCTCTCTCTCTATCTA 58.473 42.308 0.00 0.00 0.00 1.98
852 1327 8.173412 TCTCTCTCTGTCTCTCTCTCTATCTAT 58.827 40.741 0.00 0.00 0.00 1.98
853 1328 8.354711 TCTCTCTGTCTCTCTCTCTATCTATC 57.645 42.308 0.00 0.00 0.00 2.08
854 1329 8.173412 TCTCTCTGTCTCTCTCTCTATCTATCT 58.827 40.741 0.00 0.00 0.00 1.98
855 1330 9.467796 CTCTCTGTCTCTCTCTCTATCTATCTA 57.532 40.741 0.00 0.00 0.00 1.98
856 1331 9.997172 TCTCTGTCTCTCTCTCTATCTATCTAT 57.003 37.037 0.00 0.00 0.00 1.98
959 1438 8.862325 ACATACTAACTGGACAAATCAATCAA 57.138 30.769 0.00 0.00 0.00 2.57
960 1439 9.295825 ACATACTAACTGGACAAATCAATCAAA 57.704 29.630 0.00 0.00 0.00 2.69
963 1442 8.408043 ACTAACTGGACAAATCAATCAAATCA 57.592 30.769 0.00 0.00 0.00 2.57
964 1443 8.859090 ACTAACTGGACAAATCAATCAAATCAA 58.141 29.630 0.00 0.00 0.00 2.57
965 1444 9.865321 CTAACTGGACAAATCAATCAAATCAAT 57.135 29.630 0.00 0.00 0.00 2.57
966 1445 8.767478 AACTGGACAAATCAATCAAATCAATC 57.233 30.769 0.00 0.00 0.00 2.67
967 1446 7.325694 ACTGGACAAATCAATCAAATCAATCC 58.674 34.615 0.00 0.00 0.00 3.01
1146 1640 7.390823 TCTTTTCCTATGTGCATACAGTTGTA 58.609 34.615 0.00 0.00 40.79 2.41
1217 1720 1.760613 CCTGCCGGTTTATACCTCTCA 59.239 52.381 1.90 0.00 42.66 3.27
1260 1763 7.520686 AGTGCTTGCATTTTTGTTTATTATGC 58.479 30.769 0.00 0.00 41.39 3.14
1264 1767 8.610896 GCTTGCATTTTTGTTTATTATGCCATA 58.389 29.630 0.00 0.00 40.56 2.74
1663 2352 3.520290 ATTCGACCGAGTGCTATGAAA 57.480 42.857 0.00 0.00 0.00 2.69
1750 2443 5.016831 TCAAGTTGTCCATCTAGTCAGCTA 58.983 41.667 2.11 0.00 0.00 3.32
1964 2660 6.072728 CGTCAACTAAATTTGTGATCCTTGGA 60.073 38.462 0.00 0.00 0.00 3.53
2020 2716 4.379082 GCCATGTCTAAAAATCCGACGTTT 60.379 41.667 0.00 0.00 0.00 3.60
2087 2784 6.374894 CGGGTAAAATACAGGGTAAATTGACA 59.625 38.462 0.00 0.00 0.00 3.58
2230 2960 3.131755 CCATCTAGTCAGCTGTCACATCA 59.868 47.826 14.67 0.00 0.00 3.07
2231 2961 4.202233 CCATCTAGTCAGCTGTCACATCAT 60.202 45.833 14.67 0.00 0.00 2.45
2232 2962 4.645762 TCTAGTCAGCTGTCACATCATC 57.354 45.455 14.67 0.00 0.00 2.92
2233 2963 4.276642 TCTAGTCAGCTGTCACATCATCT 58.723 43.478 14.67 2.75 0.00 2.90
2234 2964 3.977134 AGTCAGCTGTCACATCATCTT 57.023 42.857 14.67 0.00 0.00 2.40
2235 2965 4.283363 AGTCAGCTGTCACATCATCTTT 57.717 40.909 14.67 0.00 0.00 2.52
2236 2966 4.649692 AGTCAGCTGTCACATCATCTTTT 58.350 39.130 14.67 0.00 0.00 2.27
2237 2967 5.068636 AGTCAGCTGTCACATCATCTTTTT 58.931 37.500 14.67 0.00 0.00 1.94
2290 3020 7.164230 TGTGGTTCAAGATTGTTAGTTTTGT 57.836 32.000 0.00 0.00 0.00 2.83
2388 3124 4.853924 ATTTCACAAGTCAACCATGGAC 57.146 40.909 21.47 6.32 35.50 4.02
2556 3685 1.068083 CGGACAGGATCATCACGGG 59.932 63.158 0.00 0.00 0.00 5.28
2676 3808 7.490657 TCCACTGGTAATCACATTACTTAGT 57.509 36.000 6.40 8.05 43.53 2.24
2677 3809 8.598202 TCCACTGGTAATCACATTACTTAGTA 57.402 34.615 12.37 0.00 43.53 1.82
2711 3843 8.906238 TGTCCTAAAAATACTTAGTACTCCCT 57.094 34.615 0.00 0.00 0.00 4.20
2712 3844 8.975295 TGTCCTAAAAATACTTAGTACTCCCTC 58.025 37.037 0.00 0.00 0.00 4.30
2713 3845 8.420222 GTCCTAAAAATACTTAGTACTCCCTCC 58.580 40.741 0.00 0.00 0.00 4.30
2714 3846 7.286316 TCCTAAAAATACTTAGTACTCCCTCCG 59.714 40.741 0.00 0.00 0.00 4.63
2715 3847 6.864151 AAAAATACTTAGTACTCCCTCCGT 57.136 37.500 0.00 0.00 0.00 4.69
2716 3848 6.864151 AAAATACTTAGTACTCCCTCCGTT 57.136 37.500 0.00 0.00 0.00 4.44
2717 3849 6.864151 AAATACTTAGTACTCCCTCCGTTT 57.136 37.500 0.00 0.00 0.00 3.60
2718 3850 6.462552 AATACTTAGTACTCCCTCCGTTTC 57.537 41.667 0.00 0.00 0.00 2.78
2719 3851 4.044946 ACTTAGTACTCCCTCCGTTTCT 57.955 45.455 0.00 0.00 0.00 2.52
2720 3852 5.184892 ACTTAGTACTCCCTCCGTTTCTA 57.815 43.478 0.00 0.00 0.00 2.10
2721 3853 5.574188 ACTTAGTACTCCCTCCGTTTCTAA 58.426 41.667 0.00 0.00 0.00 2.10
2722 3854 6.012745 ACTTAGTACTCCCTCCGTTTCTAAA 58.987 40.000 0.00 0.00 0.00 1.85
2723 3855 6.666980 ACTTAGTACTCCCTCCGTTTCTAAAT 59.333 38.462 0.00 0.00 0.00 1.40
2724 3856 7.836183 ACTTAGTACTCCCTCCGTTTCTAAATA 59.164 37.037 0.00 0.00 0.00 1.40
2725 3857 8.773033 TTAGTACTCCCTCCGTTTCTAAATAT 57.227 34.615 0.00 0.00 0.00 1.28
2726 3858 9.866655 TTAGTACTCCCTCCGTTTCTAAATATA 57.133 33.333 0.00 0.00 0.00 0.86
2727 3859 8.773033 AGTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2728 3860 8.858094 AGTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2729 3861 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2730 3862 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2731 3863 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2732 3864 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2733 3865 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2734 3866 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2767 3899 8.817092 TTCTATATGGATCACATACGGATGTA 57.183 34.615 14.23 2.61 44.82 2.29
2768 3900 8.996651 TCTATATGGATCACATACGGATGTAT 57.003 34.615 14.23 5.54 44.82 2.29
2772 3904 6.220726 TGGATCACATACGGATGTATATGG 57.779 41.667 14.23 0.19 44.82 2.74
2773 3905 5.955355 TGGATCACATACGGATGTATATGGA 59.045 40.000 14.23 6.57 44.82 3.41
2774 3906 6.127451 TGGATCACATACGGATGTATATGGAC 60.127 42.308 14.23 1.25 44.82 4.02
2775 3907 5.305139 TCACATACGGATGTATATGGACG 57.695 43.478 14.23 0.00 44.82 4.79
2776 3908 4.763279 TCACATACGGATGTATATGGACGT 59.237 41.667 14.23 0.00 44.82 4.34
2777 3909 5.939296 TCACATACGGATGTATATGGACGTA 59.061 40.000 14.23 0.00 44.82 3.57
2778 3910 6.600427 TCACATACGGATGTATATGGACGTAT 59.400 38.462 14.23 0.00 44.82 3.06
2779 3911 7.121611 TCACATACGGATGTATATGGACGTATT 59.878 37.037 14.23 0.00 44.82 1.89
2780 3912 7.758076 CACATACGGATGTATATGGACGTATTT 59.242 37.037 14.23 0.00 44.82 1.40
2781 3913 8.308931 ACATACGGATGTATATGGACGTATTTT 58.691 33.333 12.79 0.00 44.77 1.82
2782 3914 9.791820 CATACGGATGTATATGGACGTATTTTA 57.208 33.333 0.00 0.00 42.64 1.52
2784 3916 8.114331 ACGGATGTATATGGACGTATTTTAGA 57.886 34.615 0.00 0.00 32.30 2.10
2785 3917 8.242053 ACGGATGTATATGGACGTATTTTAGAG 58.758 37.037 0.00 0.00 32.30 2.43
2786 3918 8.242053 CGGATGTATATGGACGTATTTTAGAGT 58.758 37.037 0.00 0.00 0.00 3.24
2787 3919 9.355215 GGATGTATATGGACGTATTTTAGAGTG 57.645 37.037 0.00 0.00 0.00 3.51
2788 3920 9.909644 GATGTATATGGACGTATTTTAGAGTGT 57.090 33.333 0.00 0.00 0.00 3.55
2795 3927 8.058667 TGGACGTATTTTAGAGTGTAGATTCA 57.941 34.615 0.00 0.00 0.00 2.57
2796 3928 7.972277 TGGACGTATTTTAGAGTGTAGATTCAC 59.028 37.037 0.00 0.00 38.46 3.18
2808 3940 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2809 3941 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2810 3942 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
2811 3943 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
2812 3944 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
2813 3945 9.031360 GTAGATTCACTCATTTTGCTTCGTATA 57.969 33.333 0.00 0.00 0.00 1.47
2814 3946 8.668510 AGATTCACTCATTTTGCTTCGTATAT 57.331 30.769 0.00 0.00 0.00 0.86
2815 3947 9.764363 AGATTCACTCATTTTGCTTCGTATATA 57.236 29.630 0.00 0.00 0.00 0.86
2817 3949 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
2818 3950 8.575565 TCACTCATTTTGCTTCGTATATAGTC 57.424 34.615 0.00 0.00 0.00 2.59
2819 3951 7.652105 TCACTCATTTTGCTTCGTATATAGTCC 59.348 37.037 0.00 0.00 0.00 3.85
2820 3952 7.438160 CACTCATTTTGCTTCGTATATAGTCCA 59.562 37.037 0.00 0.00 0.00 4.02
2821 3953 8.150945 ACTCATTTTGCTTCGTATATAGTCCAT 58.849 33.333 0.00 0.00 0.00 3.41
2822 3954 9.639601 CTCATTTTGCTTCGTATATAGTCCATA 57.360 33.333 0.00 0.00 0.00 2.74
2823 3955 9.419297 TCATTTTGCTTCGTATATAGTCCATAC 57.581 33.333 0.00 0.00 0.00 2.39
2861 3993 9.819267 AAAAGACTTATATTTAGGAACGGAGAG 57.181 33.333 0.00 0.00 0.00 3.20
2862 3994 8.763984 AAGACTTATATTTAGGAACGGAGAGA 57.236 34.615 0.00 0.00 0.00 3.10
3126 4264 9.563898 CGAAACAAAGGGGTACTATTTAATTTC 57.436 33.333 0.00 5.30 0.00 2.17
3134 4272 6.183361 GGGGTACTATTTAATTTCCGGGTACT 60.183 42.308 0.00 0.00 31.93 2.73
3146 4284 3.091545 TCCGGGTACTAAAATGTCGACT 58.908 45.455 17.92 0.00 0.00 4.18
3175 4313 0.538057 ATGGCATATTCCAGCGTGGG 60.538 55.000 0.00 0.00 39.89 4.61
3259 4397 0.038526 CCTACCGCTTCAACGTCACT 60.039 55.000 0.00 0.00 0.00 3.41
3370 4508 1.686110 CGAGGCCTACCCCTTCACT 60.686 63.158 4.42 0.00 34.69 3.41
3539 4677 3.569690 CCGCCCCAAATCGTACGC 61.570 66.667 11.24 0.00 0.00 4.42
3541 4679 2.816520 GCCCCAAATCGTACGCGT 60.817 61.111 19.17 19.17 39.49 6.01
3544 4682 1.015085 CCCCAAATCGTACGCGTCAA 61.015 55.000 18.63 2.02 39.49 3.18
3547 4685 2.536130 CCCAAATCGTACGCGTCAATTC 60.536 50.000 18.63 1.39 39.49 2.17
3560 4706 2.369394 GTCAATTCACCCTCATCCACC 58.631 52.381 0.00 0.00 0.00 4.61
3624 4771 8.439993 AGAAGTTCTAACTCCTTTCACTTTTC 57.560 34.615 2.75 0.00 38.57 2.29
3625 4772 8.268605 AGAAGTTCTAACTCCTTTCACTTTTCT 58.731 33.333 2.75 0.00 38.57 2.52
3626 4773 8.809468 AAGTTCTAACTCCTTTCACTTTTCTT 57.191 30.769 0.00 0.00 38.57 2.52
3627 4774 8.439993 AGTTCTAACTCCTTTCACTTTTCTTC 57.560 34.615 0.00 0.00 32.86 2.87
3628 4775 7.499563 AGTTCTAACTCCTTTCACTTTTCTTCC 59.500 37.037 0.00 0.00 32.86 3.46
3629 4776 6.296803 TCTAACTCCTTTCACTTTTCTTCCC 58.703 40.000 0.00 0.00 0.00 3.97
3630 4777 3.477530 ACTCCTTTCACTTTTCTTCCCG 58.522 45.455 0.00 0.00 0.00 5.14
3631 4778 2.226674 CTCCTTTCACTTTTCTTCCCGC 59.773 50.000 0.00 0.00 0.00 6.13
3632 4779 1.269723 CCTTTCACTTTTCTTCCCGCC 59.730 52.381 0.00 0.00 0.00 6.13
3633 4780 1.953686 CTTTCACTTTTCTTCCCGCCA 59.046 47.619 0.00 0.00 0.00 5.69
3634 4781 1.314730 TTCACTTTTCTTCCCGCCAC 58.685 50.000 0.00 0.00 0.00 5.01
3635 4782 0.536460 TCACTTTTCTTCCCGCCACC 60.536 55.000 0.00 0.00 0.00 4.61
3636 4783 1.228459 ACTTTTCTTCCCGCCACCC 60.228 57.895 0.00 0.00 0.00 4.61
3637 4784 1.977009 CTTTTCTTCCCGCCACCCC 60.977 63.158 0.00 0.00 0.00 4.95
3638 4785 2.426305 CTTTTCTTCCCGCCACCCCT 62.426 60.000 0.00 0.00 0.00 4.79
3640 4787 2.420466 TTTCTTCCCGCCACCCCTTC 62.420 60.000 0.00 0.00 0.00 3.46
3641 4788 4.778143 CTTCCCGCCACCCCTTCG 62.778 72.222 0.00 0.00 0.00 3.79
3647 4794 2.671963 GCCACCCCTTCGTCCAAC 60.672 66.667 0.00 0.00 0.00 3.77
3648 4795 2.033602 CCACCCCTTCGTCCAACC 59.966 66.667 0.00 0.00 0.00 3.77
3652 4799 0.109913 ACCCCTTCGTCCAACCTTTC 59.890 55.000 0.00 0.00 0.00 2.62
3653 4800 0.109723 CCCCTTCGTCCAACCTTTCA 59.890 55.000 0.00 0.00 0.00 2.69
3654 4801 1.235724 CCCTTCGTCCAACCTTTCAC 58.764 55.000 0.00 0.00 0.00 3.18
3656 4803 1.578583 CTTCGTCCAACCTTTCACGT 58.421 50.000 0.00 0.00 33.89 4.49
3660 4807 4.724074 TCGTCCAACCTTTCACGTATAT 57.276 40.909 0.00 0.00 33.89 0.86
3664 4811 7.095910 TCGTCCAACCTTTCACGTATATTTTA 58.904 34.615 0.00 0.00 33.89 1.52
3707 4854 5.825593 ACTTATCTCCTGAACCAGTTTCA 57.174 39.130 0.00 0.00 42.26 2.69
3708 4855 5.552178 ACTTATCTCCTGAACCAGTTTCAC 58.448 41.667 0.00 0.00 39.45 3.18
3709 4856 5.308237 ACTTATCTCCTGAACCAGTTTCACT 59.692 40.000 0.00 0.00 39.45 3.41
3710 4857 4.713792 ATCTCCTGAACCAGTTTCACTT 57.286 40.909 0.00 0.00 39.45 3.16
3711 4858 4.503714 TCTCCTGAACCAGTTTCACTTT 57.496 40.909 0.00 0.00 39.45 2.66
3712 4859 5.623956 TCTCCTGAACCAGTTTCACTTTA 57.376 39.130 0.00 0.00 39.45 1.85
3713 4860 5.996644 TCTCCTGAACCAGTTTCACTTTAA 58.003 37.500 0.00 0.00 39.45 1.52
3714 4861 6.601332 TCTCCTGAACCAGTTTCACTTTAAT 58.399 36.000 0.00 0.00 39.45 1.40
3715 4862 7.060421 TCTCCTGAACCAGTTTCACTTTAATT 58.940 34.615 0.00 0.00 39.45 1.40
3716 4863 8.215050 TCTCCTGAACCAGTTTCACTTTAATTA 58.785 33.333 0.00 0.00 39.45 1.40
3717 4864 8.934023 TCCTGAACCAGTTTCACTTTAATTAT 57.066 30.769 0.00 0.00 39.45 1.28
3718 4865 9.010029 TCCTGAACCAGTTTCACTTTAATTATC 57.990 33.333 0.00 0.00 39.45 1.75
3719 4866 8.792633 CCTGAACCAGTTTCACTTTAATTATCA 58.207 33.333 0.00 0.00 39.45 2.15
3763 4910 8.980481 AAGGTAAATCACGGATAGAATTTGAT 57.020 30.769 0.00 0.00 0.00 2.57
3819 4966 8.644318 AGACGGATAATCACAAACTAACATAC 57.356 34.615 0.00 0.00 0.00 2.39
3820 4967 8.475639 AGACGGATAATCACAAACTAACATACT 58.524 33.333 0.00 0.00 0.00 2.12
3821 4968 9.740239 GACGGATAATCACAAACTAACATACTA 57.260 33.333 0.00 0.00 0.00 1.82
3822 4969 9.745880 ACGGATAATCACAAACTAACATACTAG 57.254 33.333 0.00 0.00 0.00 2.57
3823 4970 9.961265 CGGATAATCACAAACTAACATACTAGA 57.039 33.333 0.00 0.00 0.00 2.43
3847 4994 9.382275 AGAATATGTATATATCGTTGCAATGCA 57.618 29.630 14.04 2.72 36.47 3.96
3848 4995 9.425893 GAATATGTATATATCGTTGCAATGCAC 57.574 33.333 7.72 2.39 38.71 4.57
3849 4996 5.262714 TGTATATATCGTTGCAATGCACG 57.737 39.130 7.72 15.06 38.71 5.34
3850 4997 3.811722 ATATATCGTTGCAATGCACGG 57.188 42.857 22.42 12.65 38.71 4.94
3851 4998 0.662619 ATATCGTTGCAATGCACGGG 59.337 50.000 22.42 10.54 38.71 5.28
3852 4999 1.987704 TATCGTTGCAATGCACGGGC 61.988 55.000 22.42 0.34 38.71 6.13
3862 5009 3.813596 GCACGGGCATTGTCCTAG 58.186 61.111 3.77 0.00 40.72 3.02
3863 5010 1.078426 GCACGGGCATTGTCCTAGT 60.078 57.895 3.77 0.00 40.72 2.57
3870 5017 6.183360 GCACGGGCATTGTCCTAGTATATATA 60.183 42.308 3.77 0.00 40.72 0.86
3988 5160 1.891919 GGGTTTGCGTGCAGAGACA 60.892 57.895 0.00 0.00 0.00 3.41
4000 5172 3.065233 GTGCAGAGACACACATGTTTGAA 59.935 43.478 18.59 0.00 39.95 2.69
4002 5174 3.851105 GCAGAGACACACATGTTTGAAGC 60.851 47.826 18.59 10.12 39.95 3.86
4012 7429 4.074970 ACATGTTTGAAGCGAGGAAGAAT 58.925 39.130 0.00 0.00 0.00 2.40
4072 7489 1.270358 ACGCCTCTGTTCTTCAAGGTC 60.270 52.381 0.00 0.00 31.62 3.85
4093 7510 1.219522 CGAACCACACCTTCACCGTC 61.220 60.000 0.00 0.00 0.00 4.79
4132 7549 1.300311 CACCACGCCGTACAAGACA 60.300 57.895 0.00 0.00 0.00 3.41
4134 7551 1.736645 CCACGCCGTACAAGACAGG 60.737 63.158 0.00 0.00 0.00 4.00
4171 7588 4.980805 GGGCAGACCGTTGACGCA 62.981 66.667 0.00 0.00 38.18 5.24
4338 7755 3.677648 GCTGCCACAACTGCCAGG 61.678 66.667 0.00 0.00 0.00 4.45
4345 7762 1.331214 CACAACTGCCAGGGTTCAAT 58.669 50.000 0.00 0.00 0.00 2.57
4357 7781 2.218603 GGGTTCAATGACACGAACACT 58.781 47.619 17.09 0.00 41.40 3.55
4693 8117 0.032952 TGCAGTACACGACCAAGTCC 59.967 55.000 0.00 0.00 0.00 3.85
4720 8144 0.968901 TGAGGACGCTCCGGTACAAT 60.969 55.000 0.00 0.00 42.75 2.71
4810 8234 2.070028 GGCTTCAACTTCTTCGTCCTC 58.930 52.381 0.00 0.00 0.00 3.71
4813 8237 0.386858 TCAACTTCTTCGTCCTCGCG 60.387 55.000 0.00 0.00 36.96 5.87
4834 8258 2.807676 CAGGGCTTTGGGAACTACAAT 58.192 47.619 0.00 0.00 0.00 2.71
4837 8261 3.161866 GGGCTTTGGGAACTACAATCAA 58.838 45.455 0.00 0.00 0.00 2.57
4843 8267 6.682861 GCTTTGGGAACTACAATCAAACAACT 60.683 38.462 0.00 0.00 0.00 3.16
4870 8294 1.148310 CGCAGTTCAACCTCGTCAAT 58.852 50.000 0.00 0.00 0.00 2.57
4903 8327 4.296729 ACCGTCCTCGTCCCCACT 62.297 66.667 0.00 0.00 35.01 4.00
4930 8354 3.554692 GCCGTCATCCGCTTCGTG 61.555 66.667 0.00 0.00 34.38 4.35
4942 8366 2.046700 TTCGTGGCCGACAATCCC 60.047 61.111 0.00 0.00 44.13 3.85
4969 8399 8.893727 GGTACATCATGCACTAAATATATTCCC 58.106 37.037 0.00 0.00 0.00 3.97
4974 8404 9.896645 ATCATGCACTAAATATATTCCCACTAG 57.103 33.333 0.00 0.00 0.00 2.57
4975 8405 8.880244 TCATGCACTAAATATATTCCCACTAGT 58.120 33.333 0.00 0.13 0.00 2.57
5037 8576 4.009675 TGTTGTTAGCTTGCTATGAAGGG 58.990 43.478 2.99 0.00 0.00 3.95
5168 8709 4.954118 TCAGGACGGGCCCACACT 62.954 66.667 24.92 13.26 37.37 3.55
5222 8763 2.680339 TGCCGCAATGTTGATCGATAAA 59.320 40.909 0.00 0.00 0.00 1.40
5239 8780 6.513180 TCGATAAACTAGCTAGGGTCATTTG 58.487 40.000 24.35 8.26 0.00 2.32
5240 8781 5.177696 CGATAAACTAGCTAGGGTCATTTGC 59.822 44.000 24.35 10.61 0.00 3.68
5291 8846 9.308000 GAGCTGAAGAGGCTACCATATATATAT 57.692 37.037 0.00 0.00 40.40 0.86
5354 8909 9.120422 GTTTTTGTAAGTTCGGTTGTAATATGG 57.880 33.333 0.00 0.00 0.00 2.74
5363 8918 5.492895 TCGGTTGTAATATGGTTGTGATGT 58.507 37.500 0.00 0.00 0.00 3.06
5493 9048 6.365789 GCTACTCTTTAAAACAATGCAATGCA 59.634 34.615 11.44 11.44 44.86 3.96
5509 9072 1.602311 TGCATGCACACATACACACA 58.398 45.000 18.46 0.00 33.67 3.72
5525 9088 7.659799 ACATACACACAAGCTAAGACAACATAA 59.340 33.333 0.00 0.00 0.00 1.90
5545 9108 2.125350 CCGAGAAGAGCAGCACCC 60.125 66.667 0.00 0.00 0.00 4.61
5548 9111 1.739562 GAGAAGAGCAGCACCCACG 60.740 63.158 0.00 0.00 0.00 4.94
5562 9125 1.700739 ACCCACGGTCATGGTCTTAAA 59.299 47.619 0.00 0.00 38.16 1.52
5711 9277 2.814097 GCCACCACTCACACCTACAAAT 60.814 50.000 0.00 0.00 0.00 2.32
5860 9427 1.302033 GCCGCCATCTTCATCGGAT 60.302 57.895 3.51 0.00 44.23 4.18
5864 9431 1.538849 CGCCATCTTCATCGGATCACA 60.539 52.381 0.00 0.00 0.00 3.58
5925 9492 2.658593 GGACATCCATCGACGCCG 60.659 66.667 0.00 0.00 35.64 6.46
5979 9553 0.959553 ACGCGAAGACTCTGGAAGAA 59.040 50.000 15.93 0.00 46.34 2.52
6006 9580 2.750815 CGTAGCACCTGCCAACTAC 58.249 57.895 0.00 0.00 43.38 2.73
6060 9634 1.202486 TGACTTGACAACTCCACCGAC 60.202 52.381 0.00 0.00 0.00 4.79
6167 9741 1.647084 GCAATACCGCCATCGTTCC 59.353 57.895 0.00 0.00 0.00 3.62
6168 9742 0.814010 GCAATACCGCCATCGTTCCT 60.814 55.000 0.00 0.00 0.00 3.36
6169 9743 1.539496 GCAATACCGCCATCGTTCCTA 60.539 52.381 0.00 0.00 0.00 2.94
6170 9744 2.404215 CAATACCGCCATCGTTCCTAG 58.596 52.381 0.00 0.00 0.00 3.02
6171 9745 0.966920 ATACCGCCATCGTTCCTAGG 59.033 55.000 0.82 0.82 0.00 3.02
6172 9746 1.111116 TACCGCCATCGTTCCTAGGG 61.111 60.000 9.46 0.00 0.00 3.53
6173 9747 2.432300 CCGCCATCGTTCCTAGGGT 61.432 63.158 9.46 0.00 0.00 4.34
6174 9748 1.520666 CGCCATCGTTCCTAGGGTT 59.479 57.895 9.46 0.00 0.00 4.11
6175 9749 0.107848 CGCCATCGTTCCTAGGGTTT 60.108 55.000 9.46 0.00 0.00 3.27
6176 9750 1.664873 GCCATCGTTCCTAGGGTTTC 58.335 55.000 9.46 0.00 0.00 2.78
6177 9751 1.746171 GCCATCGTTCCTAGGGTTTCC 60.746 57.143 9.46 0.00 0.00 3.13
6178 9752 1.134189 CCATCGTTCCTAGGGTTTCCC 60.134 57.143 9.46 0.00 45.90 3.97
6188 9762 2.380365 GGGTTTCCCCCGAAGTAGT 58.620 57.895 0.00 0.00 45.80 2.73
6189 9763 0.035725 GGGTTTCCCCCGAAGTAGTG 60.036 60.000 0.00 0.00 45.80 2.74
6190 9764 0.675837 GGTTTCCCCCGAAGTAGTGC 60.676 60.000 0.00 0.00 0.00 4.40
6191 9765 0.675837 GTTTCCCCCGAAGTAGTGCC 60.676 60.000 0.00 0.00 0.00 5.01
6192 9766 1.844544 TTTCCCCCGAAGTAGTGCCC 61.845 60.000 0.00 0.00 0.00 5.36
6193 9767 3.006728 CCCCCGAAGTAGTGCCCA 61.007 66.667 0.00 0.00 0.00 5.36
6194 9768 2.375345 CCCCCGAAGTAGTGCCCAT 61.375 63.158 0.00 0.00 0.00 4.00
6195 9769 1.146263 CCCCGAAGTAGTGCCCATC 59.854 63.158 0.00 0.00 0.00 3.51
6196 9770 1.622607 CCCCGAAGTAGTGCCCATCA 61.623 60.000 0.00 0.00 0.00 3.07
6197 9771 0.462047 CCCGAAGTAGTGCCCATCAC 60.462 60.000 0.00 0.00 45.98 3.06
6204 9778 4.972591 GTGCCCATCACAAGCAAC 57.027 55.556 0.00 0.00 44.98 4.17
6205 9779 1.290009 GTGCCCATCACAAGCAACC 59.710 57.895 0.00 0.00 44.98 3.77
6206 9780 2.267351 TGCCCATCACAAGCAACCG 61.267 57.895 0.00 0.00 32.56 4.44
6207 9781 2.268076 GCCCATCACAAGCAACCGT 61.268 57.895 0.00 0.00 0.00 4.83
6208 9782 1.875963 CCCATCACAAGCAACCGTC 59.124 57.895 0.00 0.00 0.00 4.79
6209 9783 0.888736 CCCATCACAAGCAACCGTCA 60.889 55.000 0.00 0.00 0.00 4.35
6210 9784 0.950836 CCATCACAAGCAACCGTCAA 59.049 50.000 0.00 0.00 0.00 3.18
6211 9785 1.069022 CCATCACAAGCAACCGTCAAG 60.069 52.381 0.00 0.00 0.00 3.02
6213 9787 0.179234 TCACAAGCAACCGTCAAGGA 59.821 50.000 0.00 0.00 45.00 3.36
6214 9788 0.307760 CACAAGCAACCGTCAAGGAC 59.692 55.000 0.00 0.00 45.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.190954 ACTAAACTTTTTATCCGTCCATGC 57.809 37.500 0.00 0.00 0.00 4.06
2 3 7.335171 GTGGTACTAAACTTTTTATCCGTCCAT 59.665 37.037 0.00 0.00 0.00 3.41
5 6 6.875726 AGGTGGTACTAAACTTTTTATCCGTC 59.124 38.462 0.00 0.00 0.00 4.79
6 7 6.652062 CAGGTGGTACTAAACTTTTTATCCGT 59.348 38.462 0.00 0.00 0.00 4.69
7 8 6.875195 TCAGGTGGTACTAAACTTTTTATCCG 59.125 38.462 0.00 0.00 0.00 4.18
8 9 7.662669 TGTCAGGTGGTACTAAACTTTTTATCC 59.337 37.037 0.00 0.00 0.00 2.59
9 10 8.501580 GTGTCAGGTGGTACTAAACTTTTTATC 58.498 37.037 0.00 0.00 0.00 1.75
10 11 7.172019 CGTGTCAGGTGGTACTAAACTTTTTAT 59.828 37.037 0.00 0.00 0.00 1.40
11 12 6.479660 CGTGTCAGGTGGTACTAAACTTTTTA 59.520 38.462 0.00 0.00 0.00 1.52
12 13 5.295045 CGTGTCAGGTGGTACTAAACTTTTT 59.705 40.000 0.00 0.00 0.00 1.94
13 14 4.812626 CGTGTCAGGTGGTACTAAACTTTT 59.187 41.667 0.00 0.00 0.00 2.27
14 15 4.374399 CGTGTCAGGTGGTACTAAACTTT 58.626 43.478 0.00 0.00 0.00 2.66
15 16 3.243975 CCGTGTCAGGTGGTACTAAACTT 60.244 47.826 0.00 0.00 0.00 2.66
16 17 2.298163 CCGTGTCAGGTGGTACTAAACT 59.702 50.000 0.00 0.00 0.00 2.66
17 18 2.611224 CCCGTGTCAGGTGGTACTAAAC 60.611 54.545 0.00 0.00 0.00 2.01
18 19 1.619827 CCCGTGTCAGGTGGTACTAAA 59.380 52.381 0.00 0.00 0.00 1.85
19 20 1.203038 TCCCGTGTCAGGTGGTACTAA 60.203 52.381 0.00 0.00 0.00 2.24
20 21 0.405198 TCCCGTGTCAGGTGGTACTA 59.595 55.000 0.00 0.00 0.00 1.82
21 22 0.898789 CTCCCGTGTCAGGTGGTACT 60.899 60.000 0.00 0.00 0.00 2.73
22 23 0.896940 TCTCCCGTGTCAGGTGGTAC 60.897 60.000 0.00 0.00 0.00 3.34
23 24 0.178955 TTCTCCCGTGTCAGGTGGTA 60.179 55.000 0.00 0.00 0.00 3.25
24 25 1.052124 TTTCTCCCGTGTCAGGTGGT 61.052 55.000 0.00 0.00 0.00 4.16
25 26 0.107831 TTTTCTCCCGTGTCAGGTGG 59.892 55.000 0.00 0.00 0.00 4.61
26 27 2.185004 ATTTTCTCCCGTGTCAGGTG 57.815 50.000 0.00 0.00 0.00 4.00
27 28 4.569719 ATTATTTTCTCCCGTGTCAGGT 57.430 40.909 0.00 0.00 0.00 4.00
28 29 5.186198 AGAATTATTTTCTCCCGTGTCAGG 58.814 41.667 0.00 0.00 0.00 3.86
29 30 9.542462 TTATAGAATTATTTTCTCCCGTGTCAG 57.458 33.333 0.00 0.00 0.00 3.51
30 31 9.542462 CTTATAGAATTATTTTCTCCCGTGTCA 57.458 33.333 0.00 0.00 0.00 3.58
31 32 9.760077 TCTTATAGAATTATTTTCTCCCGTGTC 57.240 33.333 0.00 0.00 0.00 3.67
63 64 8.074972 GCAAGGTGCATTTATTTGAATTTCAAA 58.925 29.630 22.94 22.94 45.45 2.69
64 65 7.583230 GCAAGGTGCATTTATTTGAATTTCAA 58.417 30.769 7.74 7.74 44.26 2.69
65 66 7.131498 GCAAGGTGCATTTATTTGAATTTCA 57.869 32.000 0.00 0.00 44.26 2.69
81 82 6.479331 GTCTACCTACTAATAAAGCAAGGTGC 59.521 42.308 2.14 0.00 42.25 5.01
82 83 7.553334 TGTCTACCTACTAATAAAGCAAGGTG 58.447 38.462 2.14 0.00 42.25 4.00
83 84 7.147707 CCTGTCTACCTACTAATAAAGCAAGGT 60.148 40.741 0.00 0.00 43.76 3.50
84 85 7.147707 ACCTGTCTACCTACTAATAAAGCAAGG 60.148 40.741 0.00 0.00 37.58 3.61
85 86 7.783042 ACCTGTCTACCTACTAATAAAGCAAG 58.217 38.462 0.00 0.00 0.00 4.01
86 87 7.729124 ACCTGTCTACCTACTAATAAAGCAA 57.271 36.000 0.00 0.00 0.00 3.91
98 99 9.075678 GCAGAACTAATTATACCTGTCTACCTA 57.924 37.037 0.00 0.00 0.00 3.08
99 100 7.015389 GGCAGAACTAATTATACCTGTCTACCT 59.985 40.741 0.00 0.00 0.00 3.08
100 101 7.153315 GGCAGAACTAATTATACCTGTCTACC 58.847 42.308 0.00 0.00 0.00 3.18
101 102 7.723324 TGGCAGAACTAATTATACCTGTCTAC 58.277 38.462 11.44 0.00 0.00 2.59
102 103 7.907841 TGGCAGAACTAATTATACCTGTCTA 57.092 36.000 11.44 2.20 0.00 2.59
103 104 6.808321 TGGCAGAACTAATTATACCTGTCT 57.192 37.500 11.44 0.00 0.00 3.41
104 105 9.555727 TTATTGGCAGAACTAATTATACCTGTC 57.444 33.333 0.00 0.00 31.07 3.51
105 106 9.338622 GTTATTGGCAGAACTAATTATACCTGT 57.661 33.333 7.01 0.00 31.07 4.00
106 107 8.784043 GGTTATTGGCAGAACTAATTATACCTG 58.216 37.037 12.38 0.00 31.07 4.00
107 108 7.660208 CGGTTATTGGCAGAACTAATTATACCT 59.340 37.037 12.38 0.00 31.07 3.08
108 109 7.094933 CCGGTTATTGGCAGAACTAATTATACC 60.095 40.741 12.38 0.00 31.07 2.73
109 110 7.803724 CCGGTTATTGGCAGAACTAATTATAC 58.196 38.462 12.38 0.00 31.07 1.47
110 111 7.972832 CCGGTTATTGGCAGAACTAATTATA 57.027 36.000 12.38 0.00 31.07 0.98
111 112 6.877611 CCGGTTATTGGCAGAACTAATTAT 57.122 37.500 12.38 0.00 31.07 1.28
125 126 3.651803 TTTCACCAAAGCCGGTTATTG 57.348 42.857 1.90 6.17 37.07 1.90
126 127 3.576550 ACATTTCACCAAAGCCGGTTATT 59.423 39.130 1.90 0.00 37.07 1.40
127 128 3.056891 CACATTTCACCAAAGCCGGTTAT 60.057 43.478 1.90 0.00 37.07 1.89
128 129 2.294791 CACATTTCACCAAAGCCGGTTA 59.705 45.455 1.90 0.00 37.07 2.85
129 130 1.068434 CACATTTCACCAAAGCCGGTT 59.932 47.619 1.90 0.00 37.07 4.44
130 131 0.673437 CACATTTCACCAAAGCCGGT 59.327 50.000 1.90 0.00 41.07 5.28
131 132 0.038343 CCACATTTCACCAAAGCCGG 60.038 55.000 0.00 0.00 0.00 6.13
132 133 0.673437 ACCACATTTCACCAAAGCCG 59.327 50.000 0.00 0.00 0.00 5.52
133 134 2.352715 GCTACCACATTTCACCAAAGCC 60.353 50.000 0.00 0.00 0.00 4.35
134 135 2.558359 AGCTACCACATTTCACCAAAGC 59.442 45.455 0.00 0.00 0.00 3.51
135 136 4.074970 AGAGCTACCACATTTCACCAAAG 58.925 43.478 0.00 0.00 0.00 2.77
136 137 4.098914 AGAGCTACCACATTTCACCAAA 57.901 40.909 0.00 0.00 0.00 3.28
137 138 3.788227 AGAGCTACCACATTTCACCAA 57.212 42.857 0.00 0.00 0.00 3.67
138 139 3.788227 AAGAGCTACCACATTTCACCA 57.212 42.857 0.00 0.00 0.00 4.17
139 140 5.453567 AAAAAGAGCTACCACATTTCACC 57.546 39.130 0.00 0.00 0.00 4.02
158 159 4.245660 CAGAGATCAGTCACCGCTAAAAA 58.754 43.478 0.00 0.00 0.00 1.94
159 160 3.258372 ACAGAGATCAGTCACCGCTAAAA 59.742 43.478 0.00 0.00 0.00 1.52
160 161 2.826128 ACAGAGATCAGTCACCGCTAAA 59.174 45.455 0.00 0.00 0.00 1.85
161 162 2.447443 ACAGAGATCAGTCACCGCTAA 58.553 47.619 0.00 0.00 0.00 3.09
162 163 2.130272 ACAGAGATCAGTCACCGCTA 57.870 50.000 0.00 0.00 0.00 4.26
163 164 1.261480 AACAGAGATCAGTCACCGCT 58.739 50.000 0.00 0.00 0.00 5.52
164 165 2.164624 ACTAACAGAGATCAGTCACCGC 59.835 50.000 0.00 0.00 0.00 5.68
165 166 3.440522 TGACTAACAGAGATCAGTCACCG 59.559 47.826 7.11 0.00 41.76 4.94
169 170 7.013750 TCCATACATGACTAACAGAGATCAGTC 59.986 40.741 0.00 0.00 38.30 3.51
170 171 6.836007 TCCATACATGACTAACAGAGATCAGT 59.164 38.462 0.00 0.00 0.00 3.41
171 172 7.230309 TCTCCATACATGACTAACAGAGATCAG 59.770 40.741 0.00 0.00 0.00 2.90
172 173 7.062957 TCTCCATACATGACTAACAGAGATCA 58.937 38.462 0.00 0.00 0.00 2.92
173 174 7.517614 TCTCCATACATGACTAACAGAGATC 57.482 40.000 0.00 0.00 0.00 2.75
174 175 7.904558 TTCTCCATACATGACTAACAGAGAT 57.095 36.000 0.00 0.00 0.00 2.75
175 176 7.178451 TGTTTCTCCATACATGACTAACAGAGA 59.822 37.037 0.00 0.00 0.00 3.10
176 177 7.323420 TGTTTCTCCATACATGACTAACAGAG 58.677 38.462 0.00 0.00 0.00 3.35
177 178 7.239763 TGTTTCTCCATACATGACTAACAGA 57.760 36.000 0.00 0.00 0.00 3.41
178 179 9.599866 TTATGTTTCTCCATACATGACTAACAG 57.400 33.333 0.00 0.00 36.46 3.16
188 189 9.461312 GCCCAATATATTATGTTTCTCCATACA 57.539 33.333 0.00 0.00 0.00 2.29
189 190 9.461312 TGCCCAATATATTATGTTTCTCCATAC 57.539 33.333 0.00 0.00 0.00 2.39
190 191 9.685276 CTGCCCAATATATTATGTTTCTCCATA 57.315 33.333 0.00 0.00 0.00 2.74
191 192 7.616935 CCTGCCCAATATATTATGTTTCTCCAT 59.383 37.037 0.00 0.00 0.00 3.41
192 193 6.947733 CCTGCCCAATATATTATGTTTCTCCA 59.052 38.462 0.00 0.00 0.00 3.86
193 194 7.175104 TCCTGCCCAATATATTATGTTTCTCC 58.825 38.462 0.00 0.00 0.00 3.71
194 195 8.635765 TTCCTGCCCAATATATTATGTTTCTC 57.364 34.615 0.00 0.00 0.00 2.87
197 198 9.821240 TGTATTCCTGCCCAATATATTATGTTT 57.179 29.630 0.00 0.00 0.00 2.83
198 199 9.243105 GTGTATTCCTGCCCAATATATTATGTT 57.757 33.333 0.00 0.00 0.00 2.71
199 200 8.390143 TGTGTATTCCTGCCCAATATATTATGT 58.610 33.333 0.00 0.00 0.00 2.29
200 201 8.806429 TGTGTATTCCTGCCCAATATATTATG 57.194 34.615 0.00 0.00 0.00 1.90
201 202 9.995594 ATTGTGTATTCCTGCCCAATATATTAT 57.004 29.630 0.00 0.00 0.00 1.28
211 212 7.885399 AGAGAATTATATTGTGTATTCCTGCCC 59.115 37.037 0.00 0.00 0.00 5.36
259 262 4.655963 TCCAAAAAGTCTTCCCTCTCATG 58.344 43.478 0.00 0.00 0.00 3.07
260 263 5.014544 TGATCCAAAAAGTCTTCCCTCTCAT 59.985 40.000 0.00 0.00 0.00 2.90
264 267 7.056635 TCATATGATCCAAAAAGTCTTCCCTC 58.943 38.462 0.00 0.00 0.00 4.30
270 273 9.265901 CGTCTTATCATATGATCCAAAAAGTCT 57.734 33.333 21.42 0.00 36.05 3.24
274 277 9.613428 ACTTCGTCTTATCATATGATCCAAAAA 57.387 29.630 21.42 9.25 36.05 1.94
278 281 7.524717 TGACTTCGTCTTATCATATGATCCA 57.475 36.000 21.42 9.11 33.41 3.41
279 282 7.430793 CGATGACTTCGTCTTATCATATGATCC 59.569 40.741 21.42 7.78 43.01 3.36
308 311 3.244814 GCTTGCTTGTCATCGACATCTAG 59.755 47.826 0.00 1.93 42.40 2.43
309 312 3.118992 AGCTTGCTTGTCATCGACATCTA 60.119 43.478 0.00 0.00 42.40 1.98
341 344 3.054802 ACTTTTCTATCTGGGACTGCTGG 60.055 47.826 0.00 0.00 0.00 4.85
351 354 3.617263 ACGCGCCTTTACTTTTCTATCTG 59.383 43.478 5.73 0.00 0.00 2.90
354 357 3.425758 GCAACGCGCCTTTACTTTTCTAT 60.426 43.478 5.73 0.00 32.94 1.98
372 375 4.341487 ACTAGGGGAAATAACAAGGCAAC 58.659 43.478 0.00 0.00 0.00 4.17
388 391 3.267031 ACTTTTGGAGGGATTGACTAGGG 59.733 47.826 0.00 0.00 0.00 3.53
525 533 3.330267 CACTCAGCTCCTCTTAAACACC 58.670 50.000 0.00 0.00 0.00 4.16
592 635 4.114794 CCCGTATCGAATTTCCGTAAACT 58.885 43.478 0.00 0.00 0.00 2.66
595 638 3.130164 TGACCCGTATCGAATTTCCGTAA 59.870 43.478 0.00 0.00 0.00 3.18
596 639 2.687425 TGACCCGTATCGAATTTCCGTA 59.313 45.455 0.00 0.00 0.00 4.02
597 640 1.477700 TGACCCGTATCGAATTTCCGT 59.522 47.619 0.00 0.00 0.00 4.69
598 641 2.212869 TGACCCGTATCGAATTTCCG 57.787 50.000 0.00 0.00 0.00 4.30
599 642 4.879598 AGTATGACCCGTATCGAATTTCC 58.120 43.478 0.00 0.00 0.00 3.13
600 643 5.572126 GCTAGTATGACCCGTATCGAATTTC 59.428 44.000 0.00 0.00 0.00 2.17
604 647 2.816087 GGCTAGTATGACCCGTATCGAA 59.184 50.000 0.00 0.00 0.00 3.71
605 648 2.039480 AGGCTAGTATGACCCGTATCGA 59.961 50.000 0.00 0.00 0.00 3.59
606 649 2.434428 AGGCTAGTATGACCCGTATCG 58.566 52.381 0.00 0.00 0.00 2.92
607 650 4.868314 AAAGGCTAGTATGACCCGTATC 57.132 45.455 0.00 0.00 0.00 2.24
609 652 5.203528 AGTAAAAGGCTAGTATGACCCGTA 58.796 41.667 0.00 0.00 0.00 4.02
611 654 4.667519 AGTAAAAGGCTAGTATGACCCG 57.332 45.455 0.00 0.00 0.00 5.28
612 655 6.760298 GTGTTAGTAAAAGGCTAGTATGACCC 59.240 42.308 0.00 0.00 0.00 4.46
613 656 7.277319 GTGTGTTAGTAAAAGGCTAGTATGACC 59.723 40.741 0.00 0.00 0.00 4.02
614 657 7.008992 CGTGTGTTAGTAAAAGGCTAGTATGAC 59.991 40.741 0.00 0.00 0.00 3.06
615 658 7.031372 CGTGTGTTAGTAAAAGGCTAGTATGA 58.969 38.462 0.00 0.00 0.00 2.15
616 659 6.255020 CCGTGTGTTAGTAAAAGGCTAGTATG 59.745 42.308 0.00 0.00 0.00 2.39
620 669 3.930848 CCCGTGTGTTAGTAAAAGGCTAG 59.069 47.826 0.00 0.00 0.00 3.42
688 742 6.540914 GCCCAAGTATGTTAAGTTACTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
689 743 5.357032 GCCCAAGTATGTTAAGTTACTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
690 744 4.698304 GCCCAAGTATGTTAAGTTACTGCA 59.302 41.667 0.00 0.00 0.00 4.41
691 745 4.698304 TGCCCAAGTATGTTAAGTTACTGC 59.302 41.667 0.00 0.60 0.00 4.40
704 764 1.271926 GGACCACAAGTGCCCAAGTAT 60.272 52.381 0.00 0.00 0.00 2.12
705 765 0.109723 GGACCACAAGTGCCCAAGTA 59.890 55.000 0.00 0.00 0.00 2.24
741 805 4.030306 GTCTTATTTGTGCGTCAGAGTACG 59.970 45.833 0.00 0.00 45.58 3.67
819 1292 4.532126 AGAGAGACAGAGAGAGAGACAGAA 59.468 45.833 0.00 0.00 0.00 3.02
823 1296 4.404073 AGAGAGAGAGACAGAGAGAGAGAC 59.596 50.000 0.00 0.00 0.00 3.36
834 1309 9.768215 TCAGATAGATAGATAGAGAGAGAGACA 57.232 37.037 0.00 0.00 0.00 3.41
836 1311 8.918116 GCTCAGATAGATAGATAGAGAGAGAGA 58.082 40.741 0.00 0.00 0.00 3.10
837 1312 8.699130 TGCTCAGATAGATAGATAGAGAGAGAG 58.301 40.741 0.00 0.00 0.00 3.20
838 1313 8.478066 GTGCTCAGATAGATAGATAGAGAGAGA 58.522 40.741 0.00 0.00 0.00 3.10
839 1314 7.712639 GGTGCTCAGATAGATAGATAGAGAGAG 59.287 44.444 0.00 0.00 0.00 3.20
840 1315 7.365563 GGGTGCTCAGATAGATAGATAGAGAGA 60.366 44.444 0.00 0.00 0.00 3.10
841 1316 6.767902 GGGTGCTCAGATAGATAGATAGAGAG 59.232 46.154 0.00 0.00 0.00 3.20
842 1317 6.216456 TGGGTGCTCAGATAGATAGATAGAGA 59.784 42.308 0.00 0.00 0.00 3.10
843 1318 6.422333 TGGGTGCTCAGATAGATAGATAGAG 58.578 44.000 0.00 0.00 0.00 2.43
844 1319 6.394345 TGGGTGCTCAGATAGATAGATAGA 57.606 41.667 0.00 0.00 0.00 1.98
845 1320 7.473735 TTTGGGTGCTCAGATAGATAGATAG 57.526 40.000 0.00 0.00 0.00 2.08
846 1321 7.580302 GCATTTGGGTGCTCAGATAGATAGATA 60.580 40.741 0.00 0.00 41.82 1.98
847 1322 6.709281 CATTTGGGTGCTCAGATAGATAGAT 58.291 40.000 0.00 0.00 0.00 1.98
848 1323 5.512060 GCATTTGGGTGCTCAGATAGATAGA 60.512 44.000 0.00 0.00 41.82 1.98
849 1324 4.694509 GCATTTGGGTGCTCAGATAGATAG 59.305 45.833 0.00 0.00 41.82 2.08
850 1325 4.505566 GGCATTTGGGTGCTCAGATAGATA 60.506 45.833 0.00 0.00 44.45 1.98
851 1326 3.484407 GCATTTGGGTGCTCAGATAGAT 58.516 45.455 0.00 0.00 41.82 1.98
852 1327 2.421952 GGCATTTGGGTGCTCAGATAGA 60.422 50.000 0.00 0.00 44.45 1.98
853 1328 1.952296 GGCATTTGGGTGCTCAGATAG 59.048 52.381 0.00 0.00 44.45 2.08
854 1329 1.746861 CGGCATTTGGGTGCTCAGATA 60.747 52.381 0.00 0.00 44.45 1.98
855 1330 1.033746 CGGCATTTGGGTGCTCAGAT 61.034 55.000 0.00 0.00 44.45 2.90
856 1331 1.675310 CGGCATTTGGGTGCTCAGA 60.675 57.895 0.00 0.00 44.45 3.27
857 1332 1.526575 AACGGCATTTGGGTGCTCAG 61.527 55.000 0.00 0.00 44.45 3.35
959 1438 7.415989 CCGAACAGAAGATTTGATGGATTGATT 60.416 37.037 0.00 0.00 0.00 2.57
960 1439 6.039047 CCGAACAGAAGATTTGATGGATTGAT 59.961 38.462 0.00 0.00 0.00 2.57
961 1440 5.355071 CCGAACAGAAGATTTGATGGATTGA 59.645 40.000 0.00 0.00 0.00 2.57
962 1441 5.575957 CCGAACAGAAGATTTGATGGATTG 58.424 41.667 0.00 0.00 0.00 2.67
963 1442 4.096984 GCCGAACAGAAGATTTGATGGATT 59.903 41.667 0.00 0.00 0.00 3.01
964 1443 3.629398 GCCGAACAGAAGATTTGATGGAT 59.371 43.478 0.00 0.00 0.00 3.41
965 1444 3.009723 GCCGAACAGAAGATTTGATGGA 58.990 45.455 0.00 0.00 0.00 3.41
966 1445 2.098117 GGCCGAACAGAAGATTTGATGG 59.902 50.000 0.00 0.00 0.00 3.51
967 1446 2.098117 GGGCCGAACAGAAGATTTGATG 59.902 50.000 0.00 0.00 0.00 3.07
1077 1565 1.672030 CTCCACAATGGCAGCGTGA 60.672 57.895 17.84 6.04 37.47 4.35
1146 1640 6.647229 TGAGTATGCATGAGAAGTGAAGAAT 58.353 36.000 10.16 0.00 0.00 2.40
1573 2254 3.028850 CGGGGTCATGACTAGAAGGTAA 58.971 50.000 24.50 0.00 0.00 2.85
1722 2415 3.650942 ACTAGATGGACAACTTGAACCCA 59.349 43.478 0.00 0.86 0.00 4.51
1750 2443 5.378230 ACCACATGTTAGGATGATGTGAT 57.622 39.130 9.12 0.00 46.60 3.06
2061 2757 5.357596 TCAATTTACCCTGTATTTTACCCGC 59.642 40.000 0.00 0.00 0.00 6.13
2073 2770 7.504403 AGATAGTCTCATGTCAATTTACCCTG 58.496 38.462 0.00 0.00 0.00 4.45
2196 2893 4.026052 TGACTAGATGGACAGCTTGATCA 58.974 43.478 6.06 0.00 0.00 2.92
2237 2967 8.412456 TCAAGATGATGTGACAGCTTTTAAAAA 58.588 29.630 1.47 0.00 42.57 1.94
2238 2968 7.862372 GTCAAGATGATGTGACAGCTTTTAAAA 59.138 33.333 1.47 0.00 42.57 1.52
2239 2969 7.013178 TGTCAAGATGATGTGACAGCTTTTAAA 59.987 33.333 1.47 0.00 46.97 1.52
2240 2970 6.486320 TGTCAAGATGATGTGACAGCTTTTAA 59.514 34.615 1.47 0.00 46.97 1.52
2241 2971 5.997129 TGTCAAGATGATGTGACAGCTTTTA 59.003 36.000 1.47 0.00 46.97 1.52
2242 2972 4.823442 TGTCAAGATGATGTGACAGCTTTT 59.177 37.500 1.47 0.00 46.97 2.27
2243 2973 4.392047 TGTCAAGATGATGTGACAGCTTT 58.608 39.130 1.47 0.00 46.97 3.51
2244 2974 4.011966 TGTCAAGATGATGTGACAGCTT 57.988 40.909 1.47 0.00 46.97 3.74
2245 2975 3.690475 TGTCAAGATGATGTGACAGCT 57.310 42.857 1.47 0.00 46.97 4.24
2249 2979 4.005650 ACCACATGTCAAGATGATGTGAC 58.994 43.478 18.98 0.00 38.82 3.67
2250 2980 4.290711 ACCACATGTCAAGATGATGTGA 57.709 40.909 18.98 0.00 38.82 3.58
2251 2981 4.456566 TGAACCACATGTCAAGATGATGTG 59.543 41.667 0.00 13.88 37.22 3.21
2252 2982 4.654915 TGAACCACATGTCAAGATGATGT 58.345 39.130 0.00 0.00 0.00 3.06
2253 2983 5.413523 TCTTGAACCACATGTCAAGATGATG 59.586 40.000 18.71 0.00 42.20 3.07
2254 2984 5.563592 TCTTGAACCACATGTCAAGATGAT 58.436 37.500 18.71 0.00 42.20 2.45
2255 2985 4.971939 TCTTGAACCACATGTCAAGATGA 58.028 39.130 18.71 3.50 42.20 2.92
2422 3324 1.728425 CAAGTACGCGAGGGGTAAAAC 59.272 52.381 15.93 0.00 33.01 2.43
2484 3613 4.507021 CGACCTGATGAGTGAGATCAAATG 59.493 45.833 0.00 0.00 31.76 2.32
2556 3685 1.453928 GGTAGCTGGCCATTCACCC 60.454 63.158 5.51 0.00 0.00 4.61
2590 3719 4.008933 GTGTCACCCTCGCTGGCT 62.009 66.667 0.00 0.00 0.00 4.75
2703 3835 8.637099 ACTTATATTTAGAAACGGAGGGAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
2704 3836 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
2705 3837 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
2706 3838 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
2707 3839 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
2708 3840 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
2740 3872 8.762645 ACATCCGTATGTGATCCATATAGAAAT 58.237 33.333 0.00 2.31 44.79 2.17
2741 3873 8.134202 ACATCCGTATGTGATCCATATAGAAA 57.866 34.615 0.00 0.76 44.79 2.52
2742 3874 7.718334 ACATCCGTATGTGATCCATATAGAA 57.282 36.000 0.00 0.00 44.79 2.10
2743 3875 8.996651 ATACATCCGTATGTGATCCATATAGA 57.003 34.615 3.56 7.44 45.99 1.98
2746 3878 8.588472 CCATATACATCCGTATGTGATCCATAT 58.412 37.037 3.56 0.00 45.31 1.78
2747 3879 7.782644 TCCATATACATCCGTATGTGATCCATA 59.217 37.037 3.56 0.00 45.31 2.74
2748 3880 6.611236 TCCATATACATCCGTATGTGATCCAT 59.389 38.462 3.56 0.00 45.31 3.41
2749 3881 5.955355 TCCATATACATCCGTATGTGATCCA 59.045 40.000 3.56 0.00 45.31 3.41
2750 3882 6.273825 GTCCATATACATCCGTATGTGATCC 58.726 44.000 3.56 0.00 45.31 3.36
2751 3883 5.971792 CGTCCATATACATCCGTATGTGATC 59.028 44.000 3.56 0.00 45.31 2.92
2752 3884 5.417894 ACGTCCATATACATCCGTATGTGAT 59.582 40.000 3.56 0.00 45.31 3.06
2753 3885 4.763279 ACGTCCATATACATCCGTATGTGA 59.237 41.667 3.56 0.00 45.31 3.58
2754 3886 5.055642 ACGTCCATATACATCCGTATGTG 57.944 43.478 3.56 3.22 45.99 3.21
2756 3888 8.697846 AAAATACGTCCATATACATCCGTATG 57.302 34.615 0.00 0.00 40.25 2.39
2758 3890 9.230122 TCTAAAATACGTCCATATACATCCGTA 57.770 33.333 0.00 0.00 35.57 4.02
2759 3891 8.114331 TCTAAAATACGTCCATATACATCCGT 57.886 34.615 0.00 0.00 0.00 4.69
2760 3892 8.242053 ACTCTAAAATACGTCCATATACATCCG 58.758 37.037 0.00 0.00 0.00 4.18
2761 3893 9.355215 CACTCTAAAATACGTCCATATACATCC 57.645 37.037 0.00 0.00 0.00 3.51
2762 3894 9.909644 ACACTCTAAAATACGTCCATATACATC 57.090 33.333 0.00 0.00 0.00 3.06
2769 3901 8.692710 TGAATCTACACTCTAAAATACGTCCAT 58.307 33.333 0.00 0.00 0.00 3.41
2770 3902 7.972277 GTGAATCTACACTCTAAAATACGTCCA 59.028 37.037 0.00 0.00 37.73 4.02
2771 3903 8.189460 AGTGAATCTACACTCTAAAATACGTCC 58.811 37.037 0.00 0.00 46.36 4.79
2785 3917 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2786 3918 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
2787 3919 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2788 3920 9.764363 ATATACGAAGCAAAATGAGTGAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
2789 3921 6.992063 ATACGAAGCAAAATGAGTGAATCT 57.008 33.333 0.00 0.00 0.00 2.40
2791 3923 9.547753 ACTATATACGAAGCAAAATGAGTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
2792 3924 8.942338 ACTATATACGAAGCAAAATGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
2793 3925 7.652105 GGACTATATACGAAGCAAAATGAGTGA 59.348 37.037 0.00 0.00 0.00 3.41
2794 3926 7.438160 TGGACTATATACGAAGCAAAATGAGTG 59.562 37.037 0.00 0.00 0.00 3.51
2795 3927 7.497595 TGGACTATATACGAAGCAAAATGAGT 58.502 34.615 0.00 0.00 0.00 3.41
2796 3928 7.946655 TGGACTATATACGAAGCAAAATGAG 57.053 36.000 0.00 0.00 0.00 2.90
2797 3929 9.419297 GTATGGACTATATACGAAGCAAAATGA 57.581 33.333 0.00 0.00 0.00 2.57
2835 3967 9.819267 CTCTCCGTTCCTAAATATAAGTCTTTT 57.181 33.333 0.00 0.00 0.00 2.27
2836 3968 9.198475 TCTCTCCGTTCCTAAATATAAGTCTTT 57.802 33.333 0.00 0.00 0.00 2.52
2837 3969 8.763984 TCTCTCCGTTCCTAAATATAAGTCTT 57.236 34.615 0.00 0.00 0.00 3.01
2838 3970 8.000127 ACTCTCTCCGTTCCTAAATATAAGTCT 59.000 37.037 0.00 0.00 0.00 3.24
2839 3971 8.168790 ACTCTCTCCGTTCCTAAATATAAGTC 57.831 38.462 0.00 0.00 0.00 3.01
2840 3972 9.810870 ATACTCTCTCCGTTCCTAAATATAAGT 57.189 33.333 0.00 0.00 0.00 2.24
2845 3977 9.021807 CCAATATACTCTCTCCGTTCCTAAATA 57.978 37.037 0.00 0.00 0.00 1.40
2846 3978 7.509659 ACCAATATACTCTCTCCGTTCCTAAAT 59.490 37.037 0.00 0.00 0.00 1.40
2847 3979 6.837568 ACCAATATACTCTCTCCGTTCCTAAA 59.162 38.462 0.00 0.00 0.00 1.85
2848 3980 6.371278 ACCAATATACTCTCTCCGTTCCTAA 58.629 40.000 0.00 0.00 0.00 2.69
2849 3981 5.950023 ACCAATATACTCTCTCCGTTCCTA 58.050 41.667 0.00 0.00 0.00 2.94
2850 3982 4.805744 ACCAATATACTCTCTCCGTTCCT 58.194 43.478 0.00 0.00 0.00 3.36
2851 3983 5.532664 AACCAATATACTCTCTCCGTTCC 57.467 43.478 0.00 0.00 0.00 3.62
2852 3984 6.817140 ACAAAACCAATATACTCTCTCCGTTC 59.183 38.462 0.00 0.00 0.00 3.95
2853 3985 6.708285 ACAAAACCAATATACTCTCTCCGTT 58.292 36.000 0.00 0.00 0.00 4.44
2854 3986 6.154706 AGACAAAACCAATATACTCTCTCCGT 59.845 38.462 0.00 0.00 0.00 4.69
2855 3987 6.574350 AGACAAAACCAATATACTCTCTCCG 58.426 40.000 0.00 0.00 0.00 4.63
2856 3988 9.535878 CTAAGACAAAACCAATATACTCTCTCC 57.464 37.037 0.00 0.00 0.00 3.71
2890 4023 9.275398 TCTATAAACGTGGTTAAACTTCACAAT 57.725 29.630 0.00 0.00 0.00 2.71
3035 4172 6.618287 TGTGAAGTTTGACCAAGATTACAG 57.382 37.500 0.00 0.00 0.00 2.74
3041 4178 9.349713 AGTATAATTTGTGAAGTTTGACCAAGA 57.650 29.630 0.00 0.00 0.00 3.02
3088 4225 6.875726 ACCCCTTTGTTTCGTATTACTACTTC 59.124 38.462 0.00 0.00 0.00 3.01
3094 4231 8.722480 AATAGTACCCCTTTGTTTCGTATTAC 57.278 34.615 0.00 0.00 0.00 1.89
3126 4264 3.119388 TGAGTCGACATTTTAGTACCCGG 60.119 47.826 19.50 0.00 0.00 5.73
3134 4272 2.677836 GCCTGCATGAGTCGACATTTTA 59.322 45.455 19.50 0.00 0.00 1.52
3229 4367 1.189524 AGCGGTAGGTGTAGTTGCCA 61.190 55.000 0.00 0.00 0.00 4.92
3286 4424 0.391793 GAAGGAAGGAGAAGTGGGCG 60.392 60.000 0.00 0.00 0.00 6.13
3370 4508 1.933021 TCTCTTCCTTGTCGGGCTTA 58.067 50.000 0.00 0.00 0.00 3.09
3539 4677 2.009774 GTGGATGAGGGTGAATTGACG 58.990 52.381 0.00 0.00 0.00 4.35
3541 4679 2.278245 AGGTGGATGAGGGTGAATTGA 58.722 47.619 0.00 0.00 0.00 2.57
3544 4682 3.736094 TCTTAGGTGGATGAGGGTGAAT 58.264 45.455 0.00 0.00 0.00 2.57
3547 4685 3.200825 ACAATCTTAGGTGGATGAGGGTG 59.799 47.826 0.00 0.00 0.00 4.61
3612 4759 1.269723 GGCGGGAAGAAAAGTGAAAGG 59.730 52.381 0.00 0.00 0.00 3.11
3613 4760 1.953686 TGGCGGGAAGAAAAGTGAAAG 59.046 47.619 0.00 0.00 0.00 2.62
3616 4763 0.536460 GGTGGCGGGAAGAAAAGTGA 60.536 55.000 0.00 0.00 0.00 3.41
3618 4765 1.228459 GGGTGGCGGGAAGAAAAGT 60.228 57.895 0.00 0.00 0.00 2.66
3619 4766 1.977009 GGGGTGGCGGGAAGAAAAG 60.977 63.158 0.00 0.00 0.00 2.27
3621 4768 2.420466 GAAGGGGTGGCGGGAAGAAA 62.420 60.000 0.00 0.00 0.00 2.52
3623 4770 3.327404 GAAGGGGTGGCGGGAAGA 61.327 66.667 0.00 0.00 0.00 2.87
3624 4771 4.778143 CGAAGGGGTGGCGGGAAG 62.778 72.222 0.00 0.00 0.00 3.46
3629 4776 4.323477 TTGGACGAAGGGGTGGCG 62.323 66.667 0.00 0.00 0.00 5.69
3630 4777 2.671963 GTTGGACGAAGGGGTGGC 60.672 66.667 0.00 0.00 0.00 5.01
3631 4778 2.033602 GGTTGGACGAAGGGGTGG 59.966 66.667 0.00 0.00 0.00 4.61
3632 4779 0.179001 AAAGGTTGGACGAAGGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
3633 4780 0.109913 GAAAGGTTGGACGAAGGGGT 59.890 55.000 0.00 0.00 0.00 4.95
3634 4781 0.109723 TGAAAGGTTGGACGAAGGGG 59.890 55.000 0.00 0.00 0.00 4.79
3635 4782 1.235724 GTGAAAGGTTGGACGAAGGG 58.764 55.000 0.00 0.00 0.00 3.95
3636 4783 0.865769 CGTGAAAGGTTGGACGAAGG 59.134 55.000 0.00 0.00 33.64 3.46
3637 4784 1.578583 ACGTGAAAGGTTGGACGAAG 58.421 50.000 0.00 0.00 35.77 3.79
3638 4785 2.886862 TACGTGAAAGGTTGGACGAA 57.113 45.000 0.00 0.00 35.89 3.85
3640 4787 5.789710 AAATATACGTGAAAGGTTGGACG 57.210 39.130 0.00 0.00 35.89 4.79
3681 4828 9.213777 TGAAACTGGTTCAGGAGATAAGTATAT 57.786 33.333 3.54 0.00 41.47 0.86
3682 4829 8.603898 TGAAACTGGTTCAGGAGATAAGTATA 57.396 34.615 3.54 0.00 41.47 1.47
3683 4830 7.496346 TGAAACTGGTTCAGGAGATAAGTAT 57.504 36.000 3.54 0.00 41.47 2.12
3684 4831 6.928348 TGAAACTGGTTCAGGAGATAAGTA 57.072 37.500 3.54 0.00 41.47 2.24
3685 4832 5.825593 TGAAACTGGTTCAGGAGATAAGT 57.174 39.130 3.54 0.00 41.47 2.24
3738 4885 8.980481 ATCAAATTCTATCCGTGATTTACCTT 57.020 30.769 0.00 0.00 0.00 3.50
3793 4940 9.740239 GTATGTTAGTTTGTGATTATCCGTCTA 57.260 33.333 0.00 0.00 0.00 2.59
3794 4941 8.475639 AGTATGTTAGTTTGTGATTATCCGTCT 58.524 33.333 0.00 0.00 0.00 4.18
3795 4942 8.644318 AGTATGTTAGTTTGTGATTATCCGTC 57.356 34.615 0.00 0.00 0.00 4.79
3796 4943 9.745880 CTAGTATGTTAGTTTGTGATTATCCGT 57.254 33.333 0.00 0.00 0.00 4.69
3797 4944 9.961265 TCTAGTATGTTAGTTTGTGATTATCCG 57.039 33.333 0.00 0.00 0.00 4.18
3821 4968 9.382275 TGCATTGCAACGATATATACATATTCT 57.618 29.630 9.33 0.00 34.76 2.40
3822 4969 9.425893 GTGCATTGCAACGATATATACATATTC 57.574 33.333 13.94 0.00 41.47 1.75
3823 4970 8.116136 CGTGCATTGCAACGATATATACATATT 58.884 33.333 21.17 0.00 41.47 1.28
3824 4971 7.254421 CCGTGCATTGCAACGATATATACATAT 60.254 37.037 24.92 0.00 41.47 1.78
3825 4972 6.035542 CCGTGCATTGCAACGATATATACATA 59.964 38.462 24.92 0.00 41.47 2.29
3826 4973 5.163864 CCGTGCATTGCAACGATATATACAT 60.164 40.000 24.92 0.00 41.47 2.29
3827 4974 4.151512 CCGTGCATTGCAACGATATATACA 59.848 41.667 24.92 0.00 41.47 2.29
3828 4975 4.435518 CCCGTGCATTGCAACGATATATAC 60.436 45.833 24.92 6.79 41.47 1.47
3829 4976 3.682377 CCCGTGCATTGCAACGATATATA 59.318 43.478 24.92 0.00 41.47 0.86
3830 4977 2.483877 CCCGTGCATTGCAACGATATAT 59.516 45.455 24.92 0.00 41.47 0.86
3831 4978 1.870402 CCCGTGCATTGCAACGATATA 59.130 47.619 24.92 0.00 41.47 0.86
3832 4979 0.662619 CCCGTGCATTGCAACGATAT 59.337 50.000 24.92 0.00 41.47 1.63
3833 4980 1.987704 GCCCGTGCATTGCAACGATA 61.988 55.000 24.92 0.00 41.47 2.92
3834 4981 2.876955 CCCGTGCATTGCAACGAT 59.123 55.556 24.92 0.00 41.47 3.73
3835 4982 4.036804 GCCCGTGCATTGCAACGA 62.037 61.111 24.92 0.00 41.47 3.85
3836 4983 4.340019 TGCCCGTGCATTGCAACG 62.340 61.111 13.94 17.64 44.23 4.10
3845 4992 0.177141 TACTAGGACAATGCCCGTGC 59.823 55.000 0.00 0.00 38.26 5.34
3846 4993 2.910688 ATACTAGGACAATGCCCGTG 57.089 50.000 0.00 0.00 0.00 4.94
3847 4994 9.650714 TTATATATATACTAGGACAATGCCCGT 57.349 33.333 1.73 0.00 0.00 5.28
3943 5114 3.509442 TCATCAAAATTGCACCCCTTCT 58.491 40.909 0.00 0.00 0.00 2.85
3988 5160 2.254546 TCCTCGCTTCAAACATGTGT 57.745 45.000 0.00 0.00 0.00 3.72
4000 5172 1.178276 ACGTCTCATTCTTCCTCGCT 58.822 50.000 0.00 0.00 0.00 4.93
4002 5174 2.683867 AGGTACGTCTCATTCTTCCTCG 59.316 50.000 0.00 0.00 0.00 4.63
4012 7429 2.044555 CCGGAGCAGGTACGTCTCA 61.045 63.158 2.99 0.00 34.32 3.27
4072 7489 2.604174 GGTGAAGGTGTGGTTCGCG 61.604 63.158 0.00 0.00 35.63 5.87
4171 7588 4.796231 GCGTCCGCGACCATGAGT 62.796 66.667 8.23 0.00 41.33 3.41
4194 7611 2.029073 CCATGTAGTAGCGCCCGG 59.971 66.667 2.29 0.00 0.00 5.73
4282 7699 4.509737 GCTCCACCGGCGTACTCC 62.510 72.222 6.01 0.00 0.00 3.85
4338 7755 2.602217 GCAGTGTTCGTGTCATTGAACC 60.602 50.000 14.67 8.70 42.93 3.62
4345 7762 2.202810 TGCGCAGTGTTCGTGTCA 60.203 55.556 5.66 0.00 0.00 3.58
4357 7781 2.343758 GAGAGGAACCTGTGCGCA 59.656 61.111 5.66 5.66 0.00 6.09
4693 8117 1.374758 GAGCGTCCTCACCTTGGTG 60.375 63.158 13.24 13.24 38.03 4.17
4720 8144 1.888436 GCACCATCTCCACCGTCTCA 61.888 60.000 0.00 0.00 0.00 3.27
4813 8237 0.251165 TGTAGTTCCCAAAGCCCTGC 60.251 55.000 0.00 0.00 0.00 4.85
4834 8258 3.959975 GGCGCCGCAGTTGTTTGA 61.960 61.111 12.58 0.00 0.00 2.69
4855 8279 1.271163 TGGGGATTGACGAGGTTGAAC 60.271 52.381 0.00 0.00 0.00 3.18
4870 8294 2.281484 GTGTTGCGCTCTTGGGGA 60.281 61.111 9.73 0.00 0.00 4.81
4942 8366 8.604035 GGAATATATTTAGTGCATGATGTACCG 58.396 37.037 10.06 0.00 33.24 4.02
5011 8550 6.426980 TTCATAGCAAGCTAACAACATCAG 57.573 37.500 5.81 0.00 31.73 2.90
5168 8709 1.823295 GGCGGCAGAGAAGTATCCA 59.177 57.895 3.07 0.00 0.00 3.41
5222 8763 4.576330 AAAGCAAATGACCCTAGCTAGT 57.424 40.909 19.31 2.43 34.66 2.57
5291 8846 7.177568 TGCAGAGCTATTAAAATACCAACCAAA 59.822 33.333 0.00 0.00 0.00 3.28
5354 8909 4.355543 ACAGACAAACACACATCACAAC 57.644 40.909 0.00 0.00 0.00 3.32
5363 8918 6.274579 TCACGTAAGATAACAGACAAACACA 58.725 36.000 0.00 0.00 43.62 3.72
5493 9048 2.507484 AGCTTGTGTGTATGTGTGCAT 58.493 42.857 0.00 0.00 39.03 3.96
5509 9072 6.228258 TCTCGGTTTTATGTTGTCTTAGCTT 58.772 36.000 0.00 0.00 0.00 3.74
5525 9088 0.603975 GGTGCTGCTCTTCTCGGTTT 60.604 55.000 0.00 0.00 0.00 3.27
5545 9108 5.621197 TTCATTTTAAGACCATGACCGTG 57.379 39.130 0.00 0.00 0.00 4.94
5548 9111 5.402398 GTGCTTCATTTTAAGACCATGACC 58.598 41.667 0.00 0.00 0.00 4.02
5711 9277 5.833082 GTGAGAGCACTCCTTATTATCGAA 58.167 41.667 8.77 0.00 41.84 3.71
5860 9427 2.182827 CTCCTGAAGATGGGTCTGTGA 58.817 52.381 0.00 0.00 34.13 3.58
5864 9431 4.823364 TCTATCTCCTGAAGATGGGTCT 57.177 45.455 0.00 0.00 44.69 3.85
6172 9746 0.675837 GGCACTACTTCGGGGGAAAC 60.676 60.000 0.00 0.00 0.00 2.78
6173 9747 1.681076 GGCACTACTTCGGGGGAAA 59.319 57.895 0.00 0.00 0.00 3.13
6174 9748 2.295602 GGGCACTACTTCGGGGGAA 61.296 63.158 0.00 0.00 0.00 3.97
6175 9749 2.686106 GGGCACTACTTCGGGGGA 60.686 66.667 0.00 0.00 0.00 4.81
6176 9750 2.325393 GATGGGCACTACTTCGGGGG 62.325 65.000 0.00 0.00 0.00 5.40
6177 9751 1.146263 GATGGGCACTACTTCGGGG 59.854 63.158 0.00 0.00 0.00 5.73
6178 9752 0.462047 GTGATGGGCACTACTTCGGG 60.462 60.000 0.00 0.00 44.27 5.14
6179 9753 3.065575 GTGATGGGCACTACTTCGG 57.934 57.895 0.00 0.00 44.27 4.30
6188 9762 2.267351 CGGTTGCTTGTGATGGGCA 61.267 57.895 0.00 0.00 0.00 5.36
6189 9763 2.200170 GACGGTTGCTTGTGATGGGC 62.200 60.000 0.00 0.00 0.00 5.36
6190 9764 0.888736 TGACGGTTGCTTGTGATGGG 60.889 55.000 0.00 0.00 0.00 4.00
6191 9765 0.950836 TTGACGGTTGCTTGTGATGG 59.049 50.000 0.00 0.00 0.00 3.51
6192 9766 1.069022 CCTTGACGGTTGCTTGTGATG 60.069 52.381 0.00 0.00 0.00 3.07
6193 9767 1.202758 TCCTTGACGGTTGCTTGTGAT 60.203 47.619 0.00 0.00 0.00 3.06
6194 9768 0.179234 TCCTTGACGGTTGCTTGTGA 59.821 50.000 0.00 0.00 0.00 3.58
6195 9769 0.307760 GTCCTTGACGGTTGCTTGTG 59.692 55.000 0.00 0.00 0.00 3.33
6196 9770 2.702847 GTCCTTGACGGTTGCTTGT 58.297 52.632 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.