Multiple sequence alignment - TraesCS1D01G044100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G044100 chr1D 100.000 3176 0 0 709 3884 22973839 22977014 0.000000e+00 5866.0
1 TraesCS1D01G044100 chr1D 100.000 447 0 0 1 447 22973131 22973577 0.000000e+00 826.0
2 TraesCS1D01G044100 chr1B 91.182 1168 64 19 1759 2910 39541114 39542258 0.000000e+00 1550.0
3 TraesCS1D01G044100 chr1B 89.076 1007 58 19 787 1754 39540079 39541072 0.000000e+00 1203.0
4 TraesCS1D01G044100 chr1B 90.646 449 31 6 2 447 39538942 39539382 1.550000e-163 586.0
5 TraesCS1D01G044100 chr1B 81.128 461 37 19 2456 2910 39543970 39544386 1.350000e-84 324.0
6 TraesCS1D01G044100 chr1B 92.823 209 15 0 3676 3884 39545176 39545384 1.750000e-78 303.0
7 TraesCS1D01G044100 chr1B 79.739 306 37 10 3599 3884 39543298 39543598 8.510000e-47 198.0
8 TraesCS1D01G044100 chr1B 92.000 100 5 1 2932 3028 39544363 39544462 1.880000e-28 137.0
9 TraesCS1D01G044100 chr1B 93.827 81 5 0 3408 3488 658497434 658497514 5.270000e-24 122.0
10 TraesCS1D01G044100 chr1B 82.963 135 6 8 2685 2819 39542337 39542454 5.310000e-19 106.0
11 TraesCS1D01G044100 chr1B 92.000 75 5 1 2954 3028 39542265 39542338 1.910000e-18 104.0
12 TraesCS1D01G044100 chr1A 90.960 1062 71 13 709 1754 24246066 24247118 0.000000e+00 1406.0
13 TraesCS1D01G044100 chr1A 86.667 1185 97 33 1759 2910 24247153 24248309 0.000000e+00 1256.0
14 TraesCS1D01G044100 chr1A 84.513 226 17 8 2685 2910 24248391 24248598 1.410000e-49 207.0
15 TraesCS1D01G044100 chr1A 87.363 182 9 6 2687 2868 24248675 24248842 3.060000e-46 196.0
16 TraesCS1D01G044100 chr1A 75.778 450 58 28 2961 3377 24248713 24249144 3.080000e-41 180.0
17 TraesCS1D01G044100 chr1A 84.733 131 12 1 1 131 24225836 24225958 1.470000e-24 124.0
18 TraesCS1D01G044100 chr1A 90.909 88 4 3 3409 3494 287305711 287305626 8.820000e-22 115.0
19 TraesCS1D01G044100 chr1A 85.047 107 6 3 2932 3028 24248286 24248392 2.470000e-17 100.0
20 TraesCS1D01G044100 chr1A 100.000 30 0 0 3601 3630 24300929 24300958 5.420000e-04 56.5
21 TraesCS1D01G044100 chr1A 100.000 28 0 0 3001 3028 24248504 24248531 7.000000e-03 52.8
22 TraesCS1D01G044100 chr3A 80.236 339 56 6 1386 1723 36652745 36652417 1.080000e-60 244.0
23 TraesCS1D01G044100 chr3A 92.254 142 11 0 2475 2616 36651665 36651524 6.580000e-48 202.0
24 TraesCS1D01G044100 chr3A 92.500 80 6 0 3408 3487 599793099 599793020 8.820000e-22 115.0
25 TraesCS1D01G044100 chr3D 79.646 339 58 6 1386 1723 26578192 26578520 2.330000e-57 233.0
26 TraesCS1D01G044100 chr3D 90.845 142 13 0 2475 2616 26579260 26579401 1.420000e-44 191.0
27 TraesCS1D01G044100 chr3B 77.672 421 44 20 2236 2616 44773616 44773206 1.090000e-50 211.0
28 TraesCS1D01G044100 chr5D 93.976 83 4 1 3407 3488 516792221 516792139 1.470000e-24 124.0
29 TraesCS1D01G044100 chr5B 92.941 85 4 2 3409 3493 480296637 480296719 5.270000e-24 122.0
30 TraesCS1D01G044100 chr5A 90.110 91 7 2 3398 3487 33929247 33929158 2.450000e-22 117.0
31 TraesCS1D01G044100 chr2B 89.888 89 7 2 3402 3489 386315318 386315405 3.170000e-21 113.0
32 TraesCS1D01G044100 chr6D 88.889 90 8 2 3399 3487 90111905 90111817 4.100000e-20 110.0
33 TraesCS1D01G044100 chr2A 88.043 92 9 2 3400 3490 102688038 102688128 1.480000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G044100 chr1D 22973131 22977014 3883 False 3346.000000 5866 100.000000 1 3884 2 chr1D.!!$F1 3883
1 TraesCS1D01G044100 chr1B 39538942 39545384 6442 False 501.222222 1550 87.950778 2 3884 9 chr1B.!!$F2 3882
2 TraesCS1D01G044100 chr1A 24246066 24249144 3078 False 485.400000 1406 87.189714 709 3377 7 chr1A.!!$F3 2668
3 TraesCS1D01G044100 chr3A 36651524 36652745 1221 True 223.000000 244 86.245000 1386 2616 2 chr3A.!!$R2 1230
4 TraesCS1D01G044100 chr3D 26578192 26579401 1209 False 212.000000 233 85.245500 1386 2616 2 chr3D.!!$F1 1230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 419 0.036732 GACCATGACCTCACCTTGCA 59.963 55.0 0.00 0.0 0.0 4.08 F
1657 2067 0.735287 GAGGTTCTTACGGCGGACAC 60.735 60.0 13.24 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 2272 0.249741 CTCGGCGGGGATTTCGTTAT 60.250 55.0 7.21 0.0 0.0 1.89 R
3180 4138 0.169009 GCGGTCTTCTGATTTGGTGC 59.831 55.0 0.00 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 8.577048 AATGATAGGATGATTGCCATTCTTAG 57.423 34.615 0.00 0.00 37.88 2.18
127 128 3.526931 AGACGTGAGAGAGAGAGAGAG 57.473 52.381 0.00 0.00 0.00 3.20
128 129 3.096852 AGACGTGAGAGAGAGAGAGAGA 58.903 50.000 0.00 0.00 0.00 3.10
129 130 3.131223 AGACGTGAGAGAGAGAGAGAGAG 59.869 52.174 0.00 0.00 0.00 3.20
131 132 3.513912 ACGTGAGAGAGAGAGAGAGAGAA 59.486 47.826 0.00 0.00 0.00 2.87
132 133 3.865745 CGTGAGAGAGAGAGAGAGAGAAC 59.134 52.174 0.00 0.00 0.00 3.01
133 134 4.620567 CGTGAGAGAGAGAGAGAGAGAACA 60.621 50.000 0.00 0.00 0.00 3.18
134 135 5.245531 GTGAGAGAGAGAGAGAGAGAACAA 58.754 45.833 0.00 0.00 0.00 2.83
135 136 5.122396 GTGAGAGAGAGAGAGAGAGAACAAC 59.878 48.000 0.00 0.00 0.00 3.32
136 137 5.221823 TGAGAGAGAGAGAGAGAGAACAACA 60.222 44.000 0.00 0.00 0.00 3.33
139 140 6.549364 AGAGAGAGAGAGAGAGAACAACAAAA 59.451 38.462 0.00 0.00 0.00 2.44
169 170 9.512588 AGAGGCTACATATTCTGAAAATTATGG 57.487 33.333 11.91 0.65 0.00 2.74
195 196 8.959676 AAGTAGGGGTATTGAAATGGTAAAAA 57.040 30.769 0.00 0.00 0.00 1.94
196 197 8.357290 AGTAGGGGTATTGAAATGGTAAAAAC 57.643 34.615 0.00 0.00 0.00 2.43
198 199 7.865530 AGGGGTATTGAAATGGTAAAAACTT 57.134 32.000 0.00 0.00 0.00 2.66
199 200 8.270137 AGGGGTATTGAAATGGTAAAAACTTT 57.730 30.769 0.00 0.00 0.00 2.66
208 209 9.738832 TGAAATGGTAAAAACTTTAAGTAGCAC 57.261 29.630 0.00 0.00 0.00 4.40
222 223 2.636403 AGTAGCACTAAAACCCCTTCGT 59.364 45.455 0.00 0.00 0.00 3.85
273 274 5.357257 ACCAACAACAATAGTAGCCTATCG 58.643 41.667 0.00 0.00 32.57 2.92
284 285 5.758790 AGTAGCCTATCGAGTATACTGGA 57.241 43.478 18.44 18.44 35.23 3.86
285 286 5.490159 AGTAGCCTATCGAGTATACTGGAC 58.510 45.833 18.50 7.31 33.59 4.02
286 287 3.336468 AGCCTATCGAGTATACTGGACG 58.664 50.000 18.50 12.12 33.59 4.79
287 288 2.159544 GCCTATCGAGTATACTGGACGC 60.160 54.545 18.50 15.77 33.59 5.19
288 289 3.072211 CCTATCGAGTATACTGGACGCA 58.928 50.000 18.50 7.42 33.59 5.24
289 290 3.120269 CCTATCGAGTATACTGGACGCAC 60.120 52.174 18.50 0.00 33.59 5.34
291 292 1.022735 CGAGTATACTGGACGCACCT 58.977 55.000 10.90 0.00 39.86 4.00
293 294 2.541178 CGAGTATACTGGACGCACCTTC 60.541 54.545 10.90 0.00 39.86 3.46
294 295 2.426024 GAGTATACTGGACGCACCTTCA 59.574 50.000 10.90 0.00 39.86 3.02
295 296 3.031736 AGTATACTGGACGCACCTTCAT 58.968 45.455 4.10 0.00 39.86 2.57
296 297 2.315925 ATACTGGACGCACCTTCATG 57.684 50.000 1.15 0.00 39.86 3.07
360 362 2.220313 GATGAGAAGCTCCAATCTGCC 58.780 52.381 0.00 0.00 0.00 4.85
376 378 3.801997 CCCGAGGGCAATGCTCCT 61.802 66.667 13.74 13.74 33.26 3.69
379 381 2.203126 GAGGGCAATGCTCCTCGG 60.203 66.667 21.06 0.00 36.71 4.63
417 419 0.036732 GACCATGACCTCACCTTGCA 59.963 55.000 0.00 0.00 0.00 4.08
423 425 1.070758 TGACCTCACCTTGCAAGAGAC 59.929 52.381 28.05 13.97 0.00 3.36
427 429 1.345741 CTCACCTTGCAAGAGACCTCA 59.654 52.381 28.05 3.36 0.00 3.86
732 1013 0.739813 CCGGCTCGAGTTAGGGTTTG 60.740 60.000 15.13 0.00 0.00 2.93
783 1113 1.050204 TTATACGGGTCCAATCGGGG 58.950 55.000 0.00 0.00 37.22 5.73
784 1114 1.474332 TATACGGGTCCAATCGGGGC 61.474 60.000 0.00 0.00 42.12 5.80
786 1116 4.418328 CGGGTCCAATCGGGGCAA 62.418 66.667 0.00 0.00 45.89 4.52
788 1118 2.674754 GGTCCAATCGGGGCAAGA 59.325 61.111 0.00 0.00 45.89 3.02
789 1119 1.452108 GGTCCAATCGGGGCAAGAG 60.452 63.158 0.00 0.00 45.89 2.85
791 1121 1.615124 TCCAATCGGGGCAAGAGGA 60.615 57.895 0.00 0.00 37.22 3.71
792 1122 1.153086 CCAATCGGGGCAAGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
840 1198 3.679980 CGAGTGATTGTTCGAATTGGAGT 59.320 43.478 0.00 0.00 39.06 3.85
1231 1597 4.016706 CCCCCAAGAACTCGGCGT 62.017 66.667 6.85 0.00 0.00 5.68
1288 1675 3.970205 ACGAAATCCCCCGTGATTT 57.030 47.368 0.00 4.95 45.25 2.17
1322 1714 5.125097 CCAAATCCAAAGAGAACTCATGAGG 59.875 44.000 26.08 6.59 0.00 3.86
1376 1768 1.817099 GCACCTGGAGGCGAAGATG 60.817 63.158 0.00 0.00 39.32 2.90
1378 1770 2.370445 ACCTGGAGGCGAAGATGGG 61.370 63.158 0.00 0.00 39.32 4.00
1380 1772 4.161295 TGGAGGCGAAGATGGGCG 62.161 66.667 0.00 0.00 34.74 6.13
1381 1773 3.849951 GGAGGCGAAGATGGGCGA 61.850 66.667 0.00 0.00 34.74 5.54
1383 1775 2.759973 AGGCGAAGATGGGCGAGA 60.760 61.111 0.00 0.00 34.74 4.04
1463 1873 3.474570 GATGGCGGCCCAGACTCT 61.475 66.667 17.97 0.00 46.24 3.24
1556 1966 0.878961 GCGACGAGGTTGAGGTGTTT 60.879 55.000 0.00 0.00 0.00 2.83
1616 2026 1.671054 CGGCCACGGTCAGTTTGAT 60.671 57.895 2.24 0.00 36.18 2.57
1629 2039 2.096496 CAGTTTGATGTCAAGATCGCCC 59.904 50.000 0.00 0.00 37.15 6.13
1656 2066 1.588082 GAGGTTCTTACGGCGGACA 59.412 57.895 13.24 0.00 0.00 4.02
1657 2067 0.735287 GAGGTTCTTACGGCGGACAC 60.735 60.000 13.24 0.00 0.00 3.67
1710 2120 1.925972 GGGGAGAAAGGCTGGGTCT 60.926 63.158 0.00 0.00 0.00 3.85
1734 2144 1.423845 CACAAGGTAACGCCATCGC 59.576 57.895 0.00 0.00 46.39 4.58
1750 2160 1.078426 CGCCGTCCCCTTCATCTTT 60.078 57.895 0.00 0.00 0.00 2.52
1754 2164 1.282157 CCGTCCCCTTCATCTTTTCCT 59.718 52.381 0.00 0.00 0.00 3.36
1757 2167 3.370953 CGTCCCCTTCATCTTTTCCTCAT 60.371 47.826 0.00 0.00 0.00 2.90
1769 2216 5.319453 TCTTTTCCTCATGTCTGCAGATTT 58.681 37.500 21.47 7.66 0.00 2.17
1803 2250 1.869690 GCGTCTTGCCCTGTTTCTC 59.130 57.895 0.00 0.00 37.76 2.87
1804 2251 0.884704 GCGTCTTGCCCTGTTTCTCA 60.885 55.000 0.00 0.00 37.76 3.27
1805 2252 1.593196 CGTCTTGCCCTGTTTCTCAA 58.407 50.000 0.00 0.00 0.00 3.02
1806 2253 1.264288 CGTCTTGCCCTGTTTCTCAAC 59.736 52.381 0.00 0.00 0.00 3.18
1810 2257 1.981256 TGCCCTGTTTCTCAACCTTC 58.019 50.000 0.00 0.00 31.02 3.46
1811 2258 1.494721 TGCCCTGTTTCTCAACCTTCT 59.505 47.619 0.00 0.00 31.02 2.85
1814 2261 3.149981 CCCTGTTTCTCAACCTTCTTCC 58.850 50.000 0.00 0.00 31.02 3.46
1820 2267 2.803956 TCTCAACCTTCTTCCTCGCTA 58.196 47.619 0.00 0.00 0.00 4.26
1825 2272 1.272536 ACCTTCTTCCTCGCTACAGGA 60.273 52.381 0.00 0.00 41.16 3.86
1830 2277 2.617308 TCTTCCTCGCTACAGGATAACG 59.383 50.000 0.00 0.00 42.49 3.18
1840 2287 1.226746 CAGGATAACGAAATCCCCGC 58.773 55.000 14.51 0.00 45.74 6.13
1899 2346 4.753107 AGAACATCAAAAGCAAAGCCAATG 59.247 37.500 0.00 0.00 0.00 2.82
1929 2382 4.759096 GCAAGTTCGCCGCGCATT 62.759 61.111 8.75 0.00 0.00 3.56
1940 2393 1.063006 CGCGCATTCCACCAATCTG 59.937 57.895 8.75 0.00 0.00 2.90
1941 2394 1.434696 GCGCATTCCACCAATCTGG 59.565 57.895 0.30 0.00 45.02 3.86
1942 2395 2.008268 GCGCATTCCACCAATCTGGG 62.008 60.000 0.30 0.00 43.37 4.45
1967 2426 1.677217 GGCAAGACGAAGAGGAGCAAT 60.677 52.381 0.00 0.00 0.00 3.56
2015 2498 2.948315 GGATGTCAAGAGATTTCAGGGC 59.052 50.000 0.00 0.00 0.00 5.19
2016 2499 3.614092 GATGTCAAGAGATTTCAGGGCA 58.386 45.455 0.00 0.00 0.00 5.36
2017 2500 3.507162 TGTCAAGAGATTTCAGGGCAA 57.493 42.857 0.00 0.00 0.00 4.52
2060 2543 2.746277 CCCGCAGCAAGGTACCAC 60.746 66.667 15.94 2.82 0.00 4.16
2137 2635 2.131183 GCAGGAGACGAGCAATCATAC 58.869 52.381 0.00 0.00 36.45 2.39
2166 2667 4.395854 CCAACGATGAGGAAATTGATGTGA 59.604 41.667 0.00 0.00 0.00 3.58
2191 2701 1.006571 GAGGAACGGACAGCGACAA 60.007 57.895 0.00 0.00 0.00 3.18
2281 2815 2.579574 GCAACAGCAACAGCAACGC 61.580 57.895 0.00 0.00 0.00 4.84
2336 2870 5.119743 GCATTGCCAAGAAAATCAAGAAGTC 59.880 40.000 0.00 0.00 0.00 3.01
2455 3016 4.564406 GGAAGAGGAACAGAATGAGCAAGA 60.564 45.833 0.00 0.00 39.69 3.02
2456 3017 4.630644 AGAGGAACAGAATGAGCAAGAA 57.369 40.909 0.00 0.00 39.69 2.52
2537 3107 0.252103 AGGCCTTCTACTTCACGGGA 60.252 55.000 0.00 0.00 0.00 5.14
2677 3251 1.281656 GTTTCAGTTCAACGGCGGG 59.718 57.895 13.24 2.59 0.00 6.13
2721 3295 6.605471 TGTAACCTGTCAATCTGTGATAGT 57.395 37.500 0.39 0.00 42.42 2.12
2722 3296 7.712204 TGTAACCTGTCAATCTGTGATAGTA 57.288 36.000 0.39 0.00 42.42 1.82
2723 3297 7.772166 TGTAACCTGTCAATCTGTGATAGTAG 58.228 38.462 0.39 0.00 42.42 2.57
2725 3299 7.667575 AACCTGTCAATCTGTGATAGTAGAT 57.332 36.000 0.39 0.00 42.42 1.98
2818 3392 7.738847 AGTTTGATTTTGATCATTTTGGGTCT 58.261 30.769 0.00 0.00 0.00 3.85
2819 3393 8.212995 AGTTTGATTTTGATCATTTTGGGTCTT 58.787 29.630 0.00 0.00 0.00 3.01
2848 3422 8.431222 TCAAATTTTGATTCTGAATTTGGGTCT 58.569 29.630 22.89 0.00 44.68 3.85
2884 3462 9.203421 GTTCCAACTTAATTCCAAACTTATTGG 57.797 33.333 0.71 0.71 40.87 3.16
2892 3578 6.855763 ATTCCAAACTTATTGGCTGATTGA 57.144 33.333 2.32 0.00 39.38 2.57
2919 3605 3.667360 TGTCACCTGTGAATCTGTGATG 58.333 45.455 0.75 0.00 41.85 3.07
2920 3606 2.417933 GTCACCTGTGAATCTGTGATGC 59.582 50.000 0.75 0.00 41.85 3.91
2924 3610 3.442625 ACCTGTGAATCTGTGATGCATTG 59.557 43.478 0.00 0.00 0.00 2.82
2927 3613 3.128068 TGTGAATCTGTGATGCATTGCTC 59.872 43.478 10.49 5.76 0.00 4.26
3011 3843 3.195825 ACCGAGTTAGATTTGGGTCTCAG 59.804 47.826 0.00 0.00 0.00 3.35
3013 3845 4.425520 CGAGTTAGATTTGGGTCTCAGTC 58.574 47.826 0.00 0.00 0.00 3.51
3029 3943 6.424812 GGTCTCAGTCAAATTTTGATTTTGGG 59.575 38.462 14.54 12.85 42.47 4.12
3051 3998 5.764686 GGGTCTCAGCCAAATTTTGATTTTT 59.235 36.000 10.72 0.00 35.40 1.94
3116 4066 7.633789 ACTTAGATTCTGTGTGTTTGGGATAT 58.366 34.615 0.00 0.00 0.00 1.63
3117 4067 8.768397 ACTTAGATTCTGTGTGTTTGGGATATA 58.232 33.333 0.00 0.00 0.00 0.86
3118 4068 9.265901 CTTAGATTCTGTGTGTTTGGGATATAG 57.734 37.037 0.00 0.00 0.00 1.31
3119 4069 6.595682 AGATTCTGTGTGTTTGGGATATAGG 58.404 40.000 0.00 0.00 0.00 2.57
3121 4071 5.772393 TCTGTGTGTTTGGGATATAGGTT 57.228 39.130 0.00 0.00 0.00 3.50
3122 4072 5.496556 TCTGTGTGTTTGGGATATAGGTTG 58.503 41.667 0.00 0.00 0.00 3.77
3123 4073 5.249622 TCTGTGTGTTTGGGATATAGGTTGA 59.750 40.000 0.00 0.00 0.00 3.18
3141 4099 4.662145 GTTGACAACCACTGAAAACTGAG 58.338 43.478 7.10 0.00 0.00 3.35
3144 4102 4.635765 TGACAACCACTGAAAACTGAGAAG 59.364 41.667 0.00 0.00 0.00 2.85
3145 4103 3.378427 ACAACCACTGAAAACTGAGAAGC 59.622 43.478 0.00 0.00 0.00 3.86
3146 4104 2.576615 ACCACTGAAAACTGAGAAGCC 58.423 47.619 0.00 0.00 0.00 4.35
3148 4106 2.291741 CCACTGAAAACTGAGAAGCCAC 59.708 50.000 0.00 0.00 0.00 5.01
3149 4107 3.209410 CACTGAAAACTGAGAAGCCACT 58.791 45.455 0.00 0.00 0.00 4.00
3150 4108 3.003068 CACTGAAAACTGAGAAGCCACTG 59.997 47.826 0.00 0.00 0.00 3.66
3151 4109 2.551459 CTGAAAACTGAGAAGCCACTGG 59.449 50.000 0.00 0.00 0.00 4.00
3152 4110 2.092429 TGAAAACTGAGAAGCCACTGGT 60.092 45.455 0.00 0.00 0.00 4.00
3155 4113 0.972883 ACTGAGAAGCCACTGGTCTC 59.027 55.000 8.25 8.25 0.00 3.36
3156 4114 0.108898 CTGAGAAGCCACTGGTCTCG 60.109 60.000 9.92 3.58 0.00 4.04
3172 4130 3.738282 GGTCTCGCTGCTCTGTTTATATG 59.262 47.826 0.00 0.00 0.00 1.78
3174 4132 5.043903 GTCTCGCTGCTCTGTTTATATGAA 58.956 41.667 0.00 0.00 0.00 2.57
3175 4133 5.174761 GTCTCGCTGCTCTGTTTATATGAAG 59.825 44.000 0.00 0.00 0.00 3.02
3178 4136 5.067805 TCGCTGCTCTGTTTATATGAAGAGA 59.932 40.000 6.86 6.86 38.77 3.10
3179 4137 5.750547 CGCTGCTCTGTTTATATGAAGAGAA 59.249 40.000 8.22 0.00 38.77 2.87
3180 4138 6.074409 CGCTGCTCTGTTTATATGAAGAGAAG 60.074 42.308 8.22 8.34 42.98 2.85
3189 4147 8.677300 TGTTTATATGAAGAGAAGCACCAAATC 58.323 33.333 0.00 0.00 0.00 2.17
3190 4148 8.677300 GTTTATATGAAGAGAAGCACCAAATCA 58.323 33.333 0.00 0.00 0.00 2.57
3195 4153 4.630644 AGAGAAGCACCAAATCAGAAGA 57.369 40.909 0.00 0.00 0.00 2.87
3197 4155 3.416156 AGAAGCACCAAATCAGAAGACC 58.584 45.455 0.00 0.00 0.00 3.85
3198 4156 1.813513 AGCACCAAATCAGAAGACCG 58.186 50.000 0.00 0.00 0.00 4.79
3203 4161 2.955660 ACCAAATCAGAAGACCGCAAAA 59.044 40.909 0.00 0.00 0.00 2.44
3225 4183 7.844070 AAAAACCAAACAAAAACGTGAATTG 57.156 28.000 0.00 0.00 0.00 2.32
3226 4184 6.787085 AAACCAAACAAAAACGTGAATTGA 57.213 29.167 13.25 0.00 0.00 2.57
3227 4185 6.787085 AACCAAACAAAAACGTGAATTGAA 57.213 29.167 13.25 0.00 0.00 2.69
3228 4186 6.401955 ACCAAACAAAAACGTGAATTGAAG 57.598 33.333 13.25 4.68 0.00 3.02
3229 4187 5.929415 ACCAAACAAAAACGTGAATTGAAGT 59.071 32.000 13.25 0.00 0.00 3.01
3230 4188 6.090223 ACCAAACAAAAACGTGAATTGAAGTC 59.910 34.615 13.25 0.00 0.00 3.01
3244 4202 7.708752 GTGAATTGAAGTCCCACAAAAATGTAA 59.291 33.333 0.00 0.00 0.00 2.41
3245 4203 8.428063 TGAATTGAAGTCCCACAAAAATGTAAT 58.572 29.630 0.00 0.00 0.00 1.89
3281 4239 9.696917 AGAAAAGATTAATAAACCACAAAGCAG 57.303 29.630 0.00 0.00 0.00 4.24
3302 4261 8.814038 AGCAGATACTGAAAAATAGTGGAAAT 57.186 30.769 2.81 0.00 32.44 2.17
3315 4283 6.780457 ATAGTGGAAATTGAAACTGATGGG 57.220 37.500 0.00 0.00 0.00 4.00
3325 4293 3.181429 TGAAACTGATGGGGAAAAGAGCT 60.181 43.478 0.00 0.00 0.00 4.09
3326 4294 2.503895 ACTGATGGGGAAAAGAGCTG 57.496 50.000 0.00 0.00 0.00 4.24
3327 4295 1.988107 ACTGATGGGGAAAAGAGCTGA 59.012 47.619 0.00 0.00 0.00 4.26
3328 4296 2.290577 ACTGATGGGGAAAAGAGCTGAC 60.291 50.000 0.00 0.00 0.00 3.51
3329 4297 1.704628 TGATGGGGAAAAGAGCTGACA 59.295 47.619 0.00 0.00 0.00 3.58
3330 4298 2.309755 TGATGGGGAAAAGAGCTGACAT 59.690 45.455 0.00 0.00 0.00 3.06
3331 4299 3.523157 TGATGGGGAAAAGAGCTGACATA 59.477 43.478 0.00 0.00 0.00 2.29
3332 4300 4.166725 TGATGGGGAAAAGAGCTGACATAT 59.833 41.667 0.00 0.00 0.00 1.78
3333 4301 5.369404 TGATGGGGAAAAGAGCTGACATATA 59.631 40.000 0.00 0.00 0.00 0.86
3334 4302 5.036117 TGGGGAAAAGAGCTGACATATAC 57.964 43.478 0.00 0.00 0.00 1.47
3335 4303 4.721776 TGGGGAAAAGAGCTGACATATACT 59.278 41.667 0.00 0.00 0.00 2.12
3336 4304 5.191722 TGGGGAAAAGAGCTGACATATACTT 59.808 40.000 0.00 0.00 0.00 2.24
3337 4305 5.529060 GGGGAAAAGAGCTGACATATACTTG 59.471 44.000 0.00 0.00 0.00 3.16
3338 4306 6.116126 GGGAAAAGAGCTGACATATACTTGT 58.884 40.000 0.00 0.00 0.00 3.16
3339 4307 7.272978 GGGAAAAGAGCTGACATATACTTGTA 58.727 38.462 0.00 0.00 0.00 2.41
3340 4308 7.769044 GGGAAAAGAGCTGACATATACTTGTAA 59.231 37.037 0.00 0.00 0.00 2.41
3341 4309 9.331282 GGAAAAGAGCTGACATATACTTGTAAT 57.669 33.333 0.00 0.00 0.00 1.89
3358 4326 8.475331 ACTTGTAATAAATGAGTACGACAAGG 57.525 34.615 14.02 0.01 44.25 3.61
3359 4327 8.308931 ACTTGTAATAAATGAGTACGACAAGGA 58.691 33.333 14.02 1.27 44.25 3.36
3380 4348 8.501580 CAAGGATGACATATATTGTGATGTGAC 58.498 37.037 0.00 0.00 39.18 3.67
3381 4349 7.738847 AGGATGACATATATTGTGATGTGACA 58.261 34.615 0.00 0.00 39.18 3.58
3383 4351 8.501580 GGATGACATATATTGTGATGTGACAAG 58.498 37.037 0.00 0.00 39.18 3.16
3385 4353 7.563906 TGACATATATTGTGATGTGACAAGGA 58.436 34.615 0.00 0.00 39.18 3.36
3386 4354 8.212995 TGACATATATTGTGATGTGACAAGGAT 58.787 33.333 0.00 0.00 39.18 3.24
3387 4355 8.387190 ACATATATTGTGATGTGACAAGGATG 57.613 34.615 0.00 0.00 39.18 3.51
3388 4356 8.212995 ACATATATTGTGATGTGACAAGGATGA 58.787 33.333 0.00 0.00 39.18 2.92
3390 4358 5.892160 ATTGTGATGTGACAAGGATGAAG 57.108 39.130 0.00 0.00 39.18 3.02
3391 4359 4.356405 TGTGATGTGACAAGGATGAAGT 57.644 40.909 0.00 0.00 0.00 3.01
3392 4360 5.482163 TGTGATGTGACAAGGATGAAGTA 57.518 39.130 0.00 0.00 0.00 2.24
3394 4362 6.295249 TGTGATGTGACAAGGATGAAGTAAA 58.705 36.000 0.00 0.00 0.00 2.01
3395 4363 6.942005 TGTGATGTGACAAGGATGAAGTAAAT 59.058 34.615 0.00 0.00 0.00 1.40
3396 4364 7.094677 TGTGATGTGACAAGGATGAAGTAAATG 60.095 37.037 0.00 0.00 0.00 2.32
3397 4365 5.627499 TGTGACAAGGATGAAGTAAATGC 57.373 39.130 0.00 0.00 0.00 3.56
3399 4367 5.534278 TGTGACAAGGATGAAGTAAATGCAA 59.466 36.000 0.00 0.00 0.00 4.08
3400 4368 6.040278 TGTGACAAGGATGAAGTAAATGCAAA 59.960 34.615 0.00 0.00 0.00 3.68
3401 4369 6.922957 GTGACAAGGATGAAGTAAATGCAAAA 59.077 34.615 0.00 0.00 0.00 2.44
3402 4370 7.599998 GTGACAAGGATGAAGTAAATGCAAAAT 59.400 33.333 0.00 0.00 0.00 1.82
3403 4371 8.801299 TGACAAGGATGAAGTAAATGCAAAATA 58.199 29.630 0.00 0.00 0.00 1.40
3404 4372 9.807649 GACAAGGATGAAGTAAATGCAAAATAT 57.192 29.630 0.00 0.00 0.00 1.28
3405 4373 9.807649 ACAAGGATGAAGTAAATGCAAAATATC 57.192 29.630 0.00 0.00 0.00 1.63
3406 4374 9.806203 CAAGGATGAAGTAAATGCAAAATATCA 57.194 29.630 0.00 0.00 0.00 2.15
3407 4375 9.807649 AAGGATGAAGTAAATGCAAAATATCAC 57.192 29.630 0.00 0.00 0.00 3.06
3408 4376 8.416329 AGGATGAAGTAAATGCAAAATATCACC 58.584 33.333 0.00 0.00 0.00 4.02
3409 4377 8.416329 GGATGAAGTAAATGCAAAATATCACCT 58.584 33.333 0.00 0.00 0.00 4.00
3410 4378 9.455847 GATGAAGTAAATGCAAAATATCACCTC 57.544 33.333 0.00 0.00 0.00 3.85
3413 4381 7.944729 AGTAAATGCAAAATATCACCTCTGT 57.055 32.000 0.00 0.00 0.00 3.41
3416 4384 9.503427 GTAAATGCAAAATATCACCTCTGTAAC 57.497 33.333 0.00 0.00 0.00 2.50
3417 4385 7.944729 AATGCAAAATATCACCTCTGTAACT 57.055 32.000 0.00 0.00 0.00 2.24
3419 4387 7.144722 TGCAAAATATCACCTCTGTAACTTG 57.855 36.000 0.00 0.00 0.00 3.16
3420 4388 6.939730 TGCAAAATATCACCTCTGTAACTTGA 59.060 34.615 0.00 0.00 0.00 3.02
3421 4389 7.611467 TGCAAAATATCACCTCTGTAACTTGAT 59.389 33.333 0.00 0.00 0.00 2.57
3422 4390 9.109393 GCAAAATATCACCTCTGTAACTTGATA 57.891 33.333 0.00 0.00 34.51 2.15
3429 4397 8.589701 TCACCTCTGTAACTTGATATAAGACA 57.410 34.615 0.00 0.00 0.00 3.41
3430 4398 9.201989 TCACCTCTGTAACTTGATATAAGACAT 57.798 33.333 0.00 0.00 0.00 3.06
3431 4399 9.823647 CACCTCTGTAACTTGATATAAGACATT 57.176 33.333 0.00 0.00 0.00 2.71
3481 4449 7.941795 AACGTCTTATATTTTGATACGGAGG 57.058 36.000 0.00 0.00 33.44 4.30
3482 4450 6.453092 ACGTCTTATATTTTGATACGGAGGG 58.547 40.000 0.00 0.00 33.44 4.30
3483 4451 6.266103 ACGTCTTATATTTTGATACGGAGGGA 59.734 38.462 0.00 0.00 33.44 4.20
3484 4452 6.807230 CGTCTTATATTTTGATACGGAGGGAG 59.193 42.308 0.00 0.00 0.00 4.30
3485 4453 7.523380 CGTCTTATATTTTGATACGGAGGGAGT 60.523 40.741 0.00 0.00 0.00 3.85
3486 4454 8.800332 GTCTTATATTTTGATACGGAGGGAGTA 58.200 37.037 0.00 0.00 0.00 2.59
3487 4455 8.800332 TCTTATATTTTGATACGGAGGGAGTAC 58.200 37.037 0.00 0.00 0.00 2.73
3488 4456 8.716674 TTATATTTTGATACGGAGGGAGTACT 57.283 34.615 0.00 0.00 0.00 2.73
3489 4457 9.812347 TTATATTTTGATACGGAGGGAGTACTA 57.188 33.333 0.00 0.00 0.00 1.82
3490 4458 8.716674 ATATTTTGATACGGAGGGAGTACTAA 57.283 34.615 0.00 0.00 0.00 2.24
3491 4459 6.855763 TTTTGATACGGAGGGAGTACTAAA 57.144 37.500 0.00 0.00 0.00 1.85
3492 4460 6.855763 TTTGATACGGAGGGAGTACTAAAA 57.144 37.500 0.00 0.00 0.00 1.52
3493 4461 7.427989 TTTGATACGGAGGGAGTACTAAAAT 57.572 36.000 0.00 0.00 0.00 1.82
3494 4462 8.537728 TTTGATACGGAGGGAGTACTAAAATA 57.462 34.615 0.00 0.00 0.00 1.40
3495 4463 8.537728 TTGATACGGAGGGAGTACTAAAATAA 57.462 34.615 0.00 0.00 0.00 1.40
3496 4464 8.537728 TGATACGGAGGGAGTACTAAAATAAA 57.462 34.615 0.00 0.00 0.00 1.40
3497 4465 8.636213 TGATACGGAGGGAGTACTAAAATAAAG 58.364 37.037 0.00 0.00 0.00 1.85
3498 4466 8.773033 ATACGGAGGGAGTACTAAAATAAAGA 57.227 34.615 0.00 0.00 0.00 2.52
3499 4467 7.110043 ACGGAGGGAGTACTAAAATAAAGAG 57.890 40.000 0.00 0.00 0.00 2.85
3500 4468 6.894103 ACGGAGGGAGTACTAAAATAAAGAGA 59.106 38.462 0.00 0.00 0.00 3.10
3501 4469 7.068470 ACGGAGGGAGTACTAAAATAAAGAGAG 59.932 40.741 0.00 0.00 0.00 3.20
3502 4470 7.068470 CGGAGGGAGTACTAAAATAAAGAGAGT 59.932 40.741 0.00 0.00 0.00 3.24
3503 4471 9.418839 GGAGGGAGTACTAAAATAAAGAGAGTA 57.581 37.037 0.00 0.00 0.00 2.59
3522 4490 9.469807 AGAGAGTACTTCAATAAATAGAATGCG 57.530 33.333 0.00 0.00 0.00 4.73
3523 4491 8.594881 AGAGTACTTCAATAAATAGAATGCGG 57.405 34.615 0.00 0.00 0.00 5.69
3541 4509 4.258543 TGCGGAAAAGATAAAGACCGAAT 58.741 39.130 0.00 0.00 42.40 3.34
3548 4516 9.163899 GGAAAAGATAAAGACCGAATAAAGAGT 57.836 33.333 0.00 0.00 0.00 3.24
3565 4533 9.981114 AATAAAGAGTATGAAAAACAAACCCAG 57.019 29.630 0.00 0.00 0.00 4.45
3569 4537 5.454966 AGTATGAAAAACAAACCCAGGACT 58.545 37.500 0.00 0.00 0.00 3.85
3570 4538 4.670896 ATGAAAAACAAACCCAGGACTG 57.329 40.909 0.00 0.00 0.00 3.51
3571 4539 3.702792 TGAAAAACAAACCCAGGACTGA 58.297 40.909 0.00 0.00 0.00 3.41
3572 4540 4.090090 TGAAAAACAAACCCAGGACTGAA 58.910 39.130 0.00 0.00 0.00 3.02
3574 4542 2.364972 AACAAACCCAGGACTGAAGG 57.635 50.000 0.00 0.00 0.00 3.46
3578 4806 3.295973 CAAACCCAGGACTGAAGGAAAA 58.704 45.455 0.00 0.00 0.00 2.29
3580 4808 2.945456 ACCCAGGACTGAAGGAAAAAC 58.055 47.619 0.00 0.00 0.00 2.43
3588 4816 7.039784 CCAGGACTGAAGGAAAAACAATATTCA 60.040 37.037 0.00 0.00 0.00 2.57
3641 4876 9.107367 GTTCAAAAAGATTATCAAAGTCACGAG 57.893 33.333 0.00 0.00 0.00 4.18
3642 4877 7.298122 TCAAAAAGATTATCAAAGTCACGAGC 58.702 34.615 0.00 0.00 0.00 5.03
3661 4896 4.383649 CGAGCCAAACATGAAAAACATCTG 59.616 41.667 0.00 0.00 37.07 2.90
3664 4899 4.148696 GCCAAACATGAAAAACATCTGTCG 59.851 41.667 0.00 0.00 37.07 4.35
3666 4901 5.399301 CCAAACATGAAAAACATCTGTCGAC 59.601 40.000 9.11 9.11 37.07 4.20
3671 4906 3.563808 TGAAAAACATCTGTCGACCAAGG 59.436 43.478 14.12 5.22 0.00 3.61
3676 4911 0.620556 ATCTGTCGACCAAGGGCAAT 59.379 50.000 14.12 0.00 0.00 3.56
3679 4914 0.109532 TGTCGACCAAGGGCAATGAA 59.890 50.000 14.12 0.00 0.00 2.57
3698 6734 7.687348 GCAATGAATGGGTCATGATTTCCATTA 60.687 37.037 26.57 19.32 46.80 1.90
3702 6738 9.604569 TGAATGGGTCATGATTTCCATTATTAT 57.395 29.630 26.57 14.19 46.38 1.28
3729 6765 1.279840 GGCGCAGTTTGCCGATATC 59.720 57.895 10.83 0.00 43.70 1.63
3736 6772 2.746904 CAGTTTGCCGATATCACAACCA 59.253 45.455 3.12 0.00 0.00 3.67
3752 6788 0.465460 ACCAGTTGGCACGACATTGT 60.465 50.000 0.00 0.00 39.32 2.71
3755 6791 1.333308 CAGTTGGCACGACATTGTTCA 59.667 47.619 0.00 0.00 0.00 3.18
3803 6839 3.334691 TGCACAGATGTTACAGCCTTAC 58.665 45.455 0.00 0.00 0.00 2.34
3807 6843 5.237815 CACAGATGTTACAGCCTTACAGAA 58.762 41.667 0.00 0.00 0.00 3.02
3818 6854 7.112452 ACAGCCTTACAGAAAAACAGAAAAT 57.888 32.000 0.00 0.00 0.00 1.82
3838 6874 1.618837 TCTCAGTCACTTACACCAGGC 59.381 52.381 0.00 0.00 0.00 4.85
3849 6885 5.179555 CACTTACACCAGGCTAAGAAAAGTC 59.820 44.000 10.38 0.00 0.00 3.01
3869 6905 0.919710 GGGGCACTTATTCCAGACCT 59.080 55.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.850193 TGATATTTGGGCAAAGCTTTAATCTT 58.150 30.769 12.25 0.00 33.32 2.40
102 103 3.123804 CTCTCTCTCTCACGTCTAGCTC 58.876 54.545 0.00 0.00 0.00 4.09
139 140 9.692325 AATTTTCAGAATATGTAGCCTCTCTTT 57.308 29.630 0.00 0.00 0.00 2.52
157 158 8.850156 CAATACCCCTACTTCCATAATTTTCAG 58.150 37.037 0.00 0.00 0.00 3.02
166 167 5.195756 ACCATTTCAATACCCCTACTTCCAT 59.804 40.000 0.00 0.00 0.00 3.41
169 170 8.584063 TTTTACCATTTCAATACCCCTACTTC 57.416 34.615 0.00 0.00 0.00 3.01
195 196 6.196918 AGGGGTTTTAGTGCTACTTAAAGT 57.803 37.500 0.00 0.00 28.85 2.66
196 197 6.128363 CGAAGGGGTTTTAGTGCTACTTAAAG 60.128 42.308 0.00 0.00 28.85 1.85
198 199 5.221702 ACGAAGGGGTTTTAGTGCTACTTAA 60.222 40.000 0.00 0.00 0.00 1.85
199 200 4.284234 ACGAAGGGGTTTTAGTGCTACTTA 59.716 41.667 0.00 0.00 0.00 2.24
208 209 1.802365 CGTCCAACGAAGGGGTTTTAG 59.198 52.381 0.00 0.00 46.05 1.85
210 211 2.710440 CGTCCAACGAAGGGGTTTT 58.290 52.632 0.00 0.00 46.05 2.43
222 223 2.096819 GCAAGTTTGTGAGTTCGTCCAA 59.903 45.455 0.00 0.00 0.00 3.53
273 274 2.426024 TGAAGGTGCGTCCAGTATACTC 59.574 50.000 1.26 0.00 39.02 2.59
284 285 2.224426 TGGTTTAGTCATGAAGGTGCGT 60.224 45.455 0.00 0.00 0.00 5.24
285 286 2.422597 TGGTTTAGTCATGAAGGTGCG 58.577 47.619 0.00 0.00 0.00 5.34
286 287 3.568007 TGTTGGTTTAGTCATGAAGGTGC 59.432 43.478 0.00 0.00 0.00 5.01
287 288 5.766150 TTGTTGGTTTAGTCATGAAGGTG 57.234 39.130 0.00 0.00 0.00 4.00
288 289 6.976934 AATTGTTGGTTTAGTCATGAAGGT 57.023 33.333 0.00 0.00 0.00 3.50
336 338 3.878103 CAGATTGGAGCTTCTCATCCTTG 59.122 47.826 0.00 0.00 36.50 3.61
337 339 3.684981 GCAGATTGGAGCTTCTCATCCTT 60.685 47.826 0.00 0.00 36.50 3.36
360 362 2.203126 GAGGAGCATTGCCCTCGG 60.203 66.667 22.30 0.00 36.71 4.63
368 370 1.452651 CATGGTGCCGAGGAGCATT 60.453 57.895 7.21 0.00 46.24 3.56
398 400 0.036732 TGCAAGGTGAGGTCATGGTC 59.963 55.000 0.00 0.00 0.00 4.02
405 407 0.398318 GGTCTCTTGCAAGGTGAGGT 59.602 55.000 25.73 0.00 0.00 3.85
417 419 0.326264 GCCACCACATGAGGTCTCTT 59.674 55.000 12.36 0.00 40.77 2.85
423 425 1.180456 TTGCTTGCCACCACATGAGG 61.180 55.000 7.74 7.74 0.00 3.86
427 429 1.827789 ACGTTGCTTGCCACCACAT 60.828 52.632 0.00 0.00 0.00 3.21
711 713 1.602327 AACCCTAACTCGAGCCGGTC 61.602 60.000 13.61 0.00 0.00 4.79
712 714 1.190178 AAACCCTAACTCGAGCCGGT 61.190 55.000 13.61 9.84 0.00 5.28
713 715 0.739813 CAAACCCTAACTCGAGCCGG 60.740 60.000 13.61 10.22 0.00 6.13
721 1002 0.849540 CCCCTCCCCAAACCCTAACT 60.850 60.000 0.00 0.00 0.00 2.24
783 1113 1.143889 CCTATTTCCCCCTCCTCTTGC 59.856 57.143 0.00 0.00 0.00 4.01
784 1114 2.776665 TCCTATTTCCCCCTCCTCTTG 58.223 52.381 0.00 0.00 0.00 3.02
785 1115 3.753283 ATCCTATTTCCCCCTCCTCTT 57.247 47.619 0.00 0.00 0.00 2.85
786 1116 3.753283 AATCCTATTTCCCCCTCCTCT 57.247 47.619 0.00 0.00 0.00 3.69
788 1118 4.252010 CCTAAATCCTATTTCCCCCTCCT 58.748 47.826 0.00 0.00 0.00 3.69
789 1119 3.333980 CCCTAAATCCTATTTCCCCCTCC 59.666 52.174 0.00 0.00 0.00 4.30
791 1121 4.252010 CTCCCTAAATCCTATTTCCCCCT 58.748 47.826 0.00 0.00 0.00 4.79
792 1122 3.333980 CCTCCCTAAATCCTATTTCCCCC 59.666 52.174 0.00 0.00 0.00 5.40
1078 1436 5.623956 TCTAATTAACCGACCATGGATGT 57.376 39.130 21.47 9.28 0.00 3.06
1079 1437 6.149474 GGAATCTAATTAACCGACCATGGATG 59.851 42.308 21.47 9.99 0.00 3.51
1322 1714 3.322466 ATGGCCGATCGATCCCCC 61.322 66.667 18.66 18.48 0.00 5.40
1463 1873 3.838271 GTCCTCCGGATGCGCTCA 61.838 66.667 3.57 0.00 32.73 4.26
1533 1943 4.052229 CTCAACCTCGTCGCCGGT 62.052 66.667 1.90 0.83 34.27 5.28
1544 1954 1.388547 TGCTGTGAAACACCTCAACC 58.611 50.000 0.00 0.00 45.67 3.77
1613 2023 1.521457 GCGGGCGATCTTGACATCA 60.521 57.895 0.00 0.00 0.00 3.07
1616 2026 2.184322 GAGCGGGCGATCTTGACA 59.816 61.111 0.00 0.00 0.00 3.58
1629 2039 0.522915 GTAAGAACCTCGGTCGAGCG 60.523 60.000 29.80 29.80 40.69 5.03
1643 2053 2.872557 CTCGTGTCCGCCGTAAGA 59.127 61.111 0.00 0.00 43.02 2.10
1675 2085 1.189524 CCCTCCCCGATACGCCATAA 61.190 60.000 0.00 0.00 0.00 1.90
1686 2096 3.798511 GCCTTTCTCCCCTCCCCG 61.799 72.222 0.00 0.00 0.00 5.73
1710 2120 1.072489 TGGCGTTACCTTGTGGATCAA 59.928 47.619 0.00 0.00 40.22 2.57
1734 2144 1.282157 AGGAAAAGATGAAGGGGACGG 59.718 52.381 0.00 0.00 0.00 4.79
1769 2216 0.736053 ACGCCGTCAGCAAAAGAAAA 59.264 45.000 0.00 0.00 44.04 2.29
1773 2220 0.384725 CAAGACGCCGTCAGCAAAAG 60.385 55.000 20.65 0.00 44.04 2.27
1803 2250 2.611518 CTGTAGCGAGGAAGAAGGTTG 58.388 52.381 0.00 0.00 0.00 3.77
1804 2251 1.550976 CCTGTAGCGAGGAAGAAGGTT 59.449 52.381 0.00 0.00 34.69 3.50
1805 2252 1.187087 CCTGTAGCGAGGAAGAAGGT 58.813 55.000 0.00 0.00 34.69 3.50
1806 2253 1.475403 TCCTGTAGCGAGGAAGAAGG 58.525 55.000 0.10 0.00 39.32 3.46
1810 2257 2.617308 TCGTTATCCTGTAGCGAGGAAG 59.383 50.000 6.30 0.72 45.53 3.46
1811 2258 2.646930 TCGTTATCCTGTAGCGAGGAA 58.353 47.619 6.30 0.00 45.53 3.36
1814 2261 3.982058 GGATTTCGTTATCCTGTAGCGAG 59.018 47.826 10.15 0.00 40.81 5.03
1820 2267 1.474498 GCGGGGATTTCGTTATCCTGT 60.474 52.381 14.99 0.00 43.08 4.00
1825 2272 0.249741 CTCGGCGGGGATTTCGTTAT 60.250 55.000 7.21 0.00 0.00 1.89
1830 2277 2.589159 GCTCTCGGCGGGGATTTC 60.589 66.667 7.05 0.00 0.00 2.17
1868 2315 3.242518 GCTTTTGATGTTCTTAACGGCC 58.757 45.455 0.00 0.00 0.00 6.13
1873 2320 5.911752 TGGCTTTGCTTTTGATGTTCTTAA 58.088 33.333 0.00 0.00 0.00 1.85
1874 2321 5.528043 TGGCTTTGCTTTTGATGTTCTTA 57.472 34.783 0.00 0.00 0.00 2.10
1899 2346 1.244019 AACTTGCCGCCTCCATTGTC 61.244 55.000 0.00 0.00 0.00 3.18
1929 2382 1.207488 CCCAGACCCAGATTGGTGGA 61.207 60.000 5.14 0.00 40.44 4.02
2015 2498 1.021202 TGGCCAAGAAGACGTTGTTG 58.979 50.000 0.61 0.00 36.82 3.33
2016 2499 1.676006 CTTGGCCAAGAAGACGTTGTT 59.324 47.619 37.60 0.00 40.79 2.83
2017 2500 1.134220 TCTTGGCCAAGAAGACGTTGT 60.134 47.619 39.82 0.00 43.79 3.32
2060 2543 3.618594 CCATCACCTCTATGTTGTTGTCG 59.381 47.826 0.00 0.00 0.00 4.35
2137 2635 5.414454 TCAATTTCCTCATCGTTGGGTTTAG 59.586 40.000 0.00 0.00 0.00 1.85
2166 2667 1.000019 TGTCCGTTCCTCCTCCGAT 60.000 57.895 0.00 0.00 0.00 4.18
2191 2701 0.313043 ACTGTTGGAATCGTCGTCGT 59.687 50.000 1.33 0.00 38.33 4.34
2455 3016 2.363680 CGGTGATCATGCTCCTCTACTT 59.636 50.000 0.00 0.00 0.00 2.24
2456 3017 1.959985 CGGTGATCATGCTCCTCTACT 59.040 52.381 0.00 0.00 0.00 2.57
2721 3295 6.317140 CACTCCCAACTACGTACAGTAATCTA 59.683 42.308 0.00 0.00 34.45 1.98
2722 3296 5.125097 CACTCCCAACTACGTACAGTAATCT 59.875 44.000 0.00 0.00 34.45 2.40
2723 3297 5.105997 ACACTCCCAACTACGTACAGTAATC 60.106 44.000 0.00 0.00 34.45 1.75
2725 3299 4.144297 ACACTCCCAACTACGTACAGTAA 58.856 43.478 0.00 0.00 34.45 2.24
2848 3422 6.655003 GGAATTAAGTTGGAACTGATGACTGA 59.345 38.462 0.00 0.00 39.66 3.41
2884 3462 4.697352 ACAGGTGACAAACTATCAATCAGC 59.303 41.667 0.00 0.00 37.92 4.26
2892 3578 5.702670 CACAGATTCACAGGTGACAAACTAT 59.297 40.000 0.77 0.00 39.66 2.12
2919 3605 4.125703 ACTAGCAATCACTAGAGCAATGC 58.874 43.478 0.00 0.00 41.92 3.56
2920 3606 6.093219 ACAAACTAGCAATCACTAGAGCAATG 59.907 38.462 0.00 0.00 41.92 2.82
2924 3610 5.062809 GTGACAAACTAGCAATCACTAGAGC 59.937 44.000 0.00 0.00 41.92 4.09
2927 3613 4.327357 CGGTGACAAACTAGCAATCACTAG 59.673 45.833 13.55 0.00 44.38 2.57
3011 3843 6.073602 GCTGAGACCCAAAATCAAAATTTGAC 60.074 38.462 10.91 0.00 43.48 3.18
3013 3845 5.179929 GGCTGAGACCCAAAATCAAAATTTG 59.820 40.000 0.00 0.00 35.27 2.32
3051 3998 5.426689 ACTGATGACTGAGAGCCAAATTA 57.573 39.130 0.00 0.00 0.00 1.40
3119 4069 4.394920 TCTCAGTTTTCAGTGGTTGTCAAC 59.605 41.667 7.20 7.20 0.00 3.18
3121 4071 4.214986 TCTCAGTTTTCAGTGGTTGTCA 57.785 40.909 0.00 0.00 0.00 3.58
3122 4072 4.496507 GCTTCTCAGTTTTCAGTGGTTGTC 60.497 45.833 0.00 0.00 0.00 3.18
3123 4073 3.378427 GCTTCTCAGTTTTCAGTGGTTGT 59.622 43.478 0.00 0.00 0.00 3.32
3136 4094 0.972883 GAGACCAGTGGCTTCTCAGT 59.027 55.000 19.97 0.00 0.00 3.41
3141 4099 1.739562 CAGCGAGACCAGTGGCTTC 60.740 63.158 9.78 6.25 32.46 3.86
3144 4102 4.385405 AGCAGCGAGACCAGTGGC 62.385 66.667 9.78 1.85 0.00 5.01
3145 4103 2.125753 GAGCAGCGAGACCAGTGG 60.126 66.667 7.91 7.91 0.00 4.00
3146 4104 1.445754 CAGAGCAGCGAGACCAGTG 60.446 63.158 0.00 0.00 0.00 3.66
3148 4106 0.320247 AAACAGAGCAGCGAGACCAG 60.320 55.000 0.00 0.00 0.00 4.00
3149 4107 0.966179 TAAACAGAGCAGCGAGACCA 59.034 50.000 0.00 0.00 0.00 4.02
3150 4108 2.301577 ATAAACAGAGCAGCGAGACC 57.698 50.000 0.00 0.00 0.00 3.85
3151 4109 4.611943 TCATATAAACAGAGCAGCGAGAC 58.388 43.478 0.00 0.00 0.00 3.36
3152 4110 4.918810 TCATATAAACAGAGCAGCGAGA 57.081 40.909 0.00 0.00 0.00 4.04
3155 4113 5.284864 TCTCTTCATATAAACAGAGCAGCG 58.715 41.667 0.00 0.00 33.97 5.18
3156 4114 6.292811 GCTTCTCTTCATATAAACAGAGCAGC 60.293 42.308 11.53 11.53 42.66 5.25
3172 4130 4.999950 TCTTCTGATTTGGTGCTTCTCTTC 59.000 41.667 0.00 0.00 0.00 2.87
3174 4132 4.322567 GTCTTCTGATTTGGTGCTTCTCT 58.677 43.478 0.00 0.00 0.00 3.10
3175 4133 3.438434 GGTCTTCTGATTTGGTGCTTCTC 59.562 47.826 0.00 0.00 0.00 2.87
3178 4136 2.154462 CGGTCTTCTGATTTGGTGCTT 58.846 47.619 0.00 0.00 0.00 3.91
3179 4137 1.813513 CGGTCTTCTGATTTGGTGCT 58.186 50.000 0.00 0.00 0.00 4.40
3180 4138 0.169009 GCGGTCTTCTGATTTGGTGC 59.831 55.000 0.00 0.00 0.00 5.01
3203 4161 6.787085 TCAATTCACGTTTTTGTTTGGTTT 57.213 29.167 0.00 0.00 0.00 3.27
3206 4164 6.401955 ACTTCAATTCACGTTTTTGTTTGG 57.598 33.333 0.00 0.00 0.00 3.28
3207 4165 6.454981 GGGACTTCAATTCACGTTTTTGTTTG 60.455 38.462 0.00 0.00 0.00 2.93
3208 4166 5.579119 GGGACTTCAATTCACGTTTTTGTTT 59.421 36.000 0.00 0.00 0.00 2.83
3210 4168 4.158764 TGGGACTTCAATTCACGTTTTTGT 59.841 37.500 0.00 0.00 0.00 2.83
3211 4169 4.502645 GTGGGACTTCAATTCACGTTTTTG 59.497 41.667 0.00 0.00 0.00 2.44
3215 4173 2.925724 TGTGGGACTTCAATTCACGTT 58.074 42.857 0.00 0.00 0.00 3.99
3216 4174 2.631160 TGTGGGACTTCAATTCACGT 57.369 45.000 0.00 0.00 0.00 4.49
3218 4176 6.048509 ACATTTTTGTGGGACTTCAATTCAC 58.951 36.000 0.00 0.00 0.00 3.18
3219 4177 6.232581 ACATTTTTGTGGGACTTCAATTCA 57.767 33.333 0.00 0.00 0.00 2.57
3220 4178 8.711457 CATTACATTTTTGTGGGACTTCAATTC 58.289 33.333 0.00 0.00 0.00 2.17
3222 4180 7.961351 TCATTACATTTTTGTGGGACTTCAAT 58.039 30.769 0.00 0.00 0.00 2.57
3224 4182 6.968263 TCATTACATTTTTGTGGGACTTCA 57.032 33.333 0.00 0.00 0.00 3.02
3225 4183 8.547894 GTTTTCATTACATTTTTGTGGGACTTC 58.452 33.333 0.00 0.00 0.00 3.01
3226 4184 8.264347 AGTTTTCATTACATTTTTGTGGGACTT 58.736 29.630 0.00 0.00 0.00 3.01
3227 4185 7.791029 AGTTTTCATTACATTTTTGTGGGACT 58.209 30.769 0.00 0.00 0.00 3.85
3228 4186 9.535878 TTAGTTTTCATTACATTTTTGTGGGAC 57.464 29.630 0.00 0.00 0.00 4.46
3266 4224 7.759489 TTTCAGTATCTGCTTTGTGGTTTAT 57.241 32.000 0.00 0.00 0.00 1.40
3269 4227 6.463995 TTTTTCAGTATCTGCTTTGTGGTT 57.536 33.333 0.00 0.00 0.00 3.67
3274 4232 8.044060 TCCACTATTTTTCAGTATCTGCTTTG 57.956 34.615 0.00 0.00 0.00 2.77
3275 4233 8.635765 TTCCACTATTTTTCAGTATCTGCTTT 57.364 30.769 0.00 0.00 0.00 3.51
3285 4243 9.748708 TCAGTTTCAATTTCCACTATTTTTCAG 57.251 29.630 0.00 0.00 0.00 3.02
3302 4261 3.573967 GCTCTTTTCCCCATCAGTTTCAA 59.426 43.478 0.00 0.00 0.00 2.69
3307 4266 1.988107 TCAGCTCTTTTCCCCATCAGT 59.012 47.619 0.00 0.00 0.00 3.41
3315 4283 8.718102 TTACAAGTATATGTCAGCTCTTTTCC 57.282 34.615 0.00 0.00 34.75 3.13
3332 4300 9.577110 CCTTGTCGTACTCATTTATTACAAGTA 57.423 33.333 0.00 0.00 40.42 2.24
3333 4301 8.308931 TCCTTGTCGTACTCATTTATTACAAGT 58.691 33.333 0.00 0.00 40.42 3.16
3334 4302 8.697846 TCCTTGTCGTACTCATTTATTACAAG 57.302 34.615 0.00 0.00 41.25 3.16
3335 4303 9.093970 CATCCTTGTCGTACTCATTTATTACAA 57.906 33.333 0.00 0.00 0.00 2.41
3336 4304 8.471609 TCATCCTTGTCGTACTCATTTATTACA 58.528 33.333 0.00 0.00 0.00 2.41
3337 4305 8.753175 GTCATCCTTGTCGTACTCATTTATTAC 58.247 37.037 0.00 0.00 0.00 1.89
3338 4306 8.471609 TGTCATCCTTGTCGTACTCATTTATTA 58.528 33.333 0.00 0.00 0.00 0.98
3339 4307 7.327975 TGTCATCCTTGTCGTACTCATTTATT 58.672 34.615 0.00 0.00 0.00 1.40
3340 4308 6.873997 TGTCATCCTTGTCGTACTCATTTAT 58.126 36.000 0.00 0.00 0.00 1.40
3341 4309 6.275494 TGTCATCCTTGTCGTACTCATTTA 57.725 37.500 0.00 0.00 0.00 1.40
3342 4310 5.147330 TGTCATCCTTGTCGTACTCATTT 57.853 39.130 0.00 0.00 0.00 2.32
3343 4311 4.801330 TGTCATCCTTGTCGTACTCATT 57.199 40.909 0.00 0.00 0.00 2.57
3344 4312 6.656632 ATATGTCATCCTTGTCGTACTCAT 57.343 37.500 0.00 0.00 0.00 2.90
3345 4313 7.761038 ATATATGTCATCCTTGTCGTACTCA 57.239 36.000 0.00 0.00 0.00 3.41
3346 4314 8.082852 ACAATATATGTCATCCTTGTCGTACTC 58.917 37.037 0.00 0.00 37.96 2.59
3347 4315 7.867909 CACAATATATGTCATCCTTGTCGTACT 59.132 37.037 0.00 0.00 41.46 2.73
3348 4316 7.865889 TCACAATATATGTCATCCTTGTCGTAC 59.134 37.037 0.00 0.00 41.46 3.67
3349 4317 7.947282 TCACAATATATGTCATCCTTGTCGTA 58.053 34.615 0.00 0.00 41.46 3.43
3350 4318 6.816136 TCACAATATATGTCATCCTTGTCGT 58.184 36.000 0.00 0.00 41.46 4.34
3351 4319 7.386025 ACATCACAATATATGTCATCCTTGTCG 59.614 37.037 0.00 0.00 41.46 4.35
3352 4320 8.501580 CACATCACAATATATGTCATCCTTGTC 58.498 37.037 0.00 0.00 41.46 3.18
3353 4321 8.212995 TCACATCACAATATATGTCATCCTTGT 58.787 33.333 0.00 0.00 41.46 3.16
3354 4322 8.501580 GTCACATCACAATATATGTCATCCTTG 58.498 37.037 0.00 0.00 41.46 3.61
3355 4323 8.212995 TGTCACATCACAATATATGTCATCCTT 58.787 33.333 0.00 0.00 41.46 3.36
3356 4324 7.738847 TGTCACATCACAATATATGTCATCCT 58.261 34.615 0.00 0.00 41.46 3.24
3357 4325 7.967890 TGTCACATCACAATATATGTCATCC 57.032 36.000 0.00 0.00 41.46 3.51
3358 4326 8.501580 CCTTGTCACATCACAATATATGTCATC 58.498 37.037 0.00 0.00 41.46 2.92
3359 4327 8.212995 TCCTTGTCACATCACAATATATGTCAT 58.787 33.333 0.00 0.00 41.46 3.06
3380 4348 9.806203 TGATATTTTGCATTTACTTCATCCTTG 57.194 29.630 0.00 0.00 0.00 3.61
3381 4349 9.807649 GTGATATTTTGCATTTACTTCATCCTT 57.192 29.630 0.00 0.00 0.00 3.36
3383 4351 8.416329 AGGTGATATTTTGCATTTACTTCATCC 58.584 33.333 0.00 0.00 0.00 3.51
3385 4353 9.193806 AGAGGTGATATTTTGCATTTACTTCAT 57.806 29.630 0.00 0.00 0.00 2.57
3386 4354 8.461222 CAGAGGTGATATTTTGCATTTACTTCA 58.539 33.333 0.00 0.00 0.00 3.02
3387 4355 8.462016 ACAGAGGTGATATTTTGCATTTACTTC 58.538 33.333 0.00 0.00 0.00 3.01
3388 4356 8.353423 ACAGAGGTGATATTTTGCATTTACTT 57.647 30.769 0.00 0.00 0.00 2.24
3390 4358 9.503427 GTTACAGAGGTGATATTTTGCATTTAC 57.497 33.333 0.00 0.00 0.00 2.01
3391 4359 9.461312 AGTTACAGAGGTGATATTTTGCATTTA 57.539 29.630 0.00 0.00 0.00 1.40
3392 4360 8.353423 AGTTACAGAGGTGATATTTTGCATTT 57.647 30.769 0.00 0.00 0.00 2.32
3394 4362 7.611467 TCAAGTTACAGAGGTGATATTTTGCAT 59.389 33.333 0.00 0.00 0.00 3.96
3395 4363 6.939730 TCAAGTTACAGAGGTGATATTTTGCA 59.060 34.615 0.00 0.00 0.00 4.08
3396 4364 7.377766 TCAAGTTACAGAGGTGATATTTTGC 57.622 36.000 0.00 0.00 0.00 3.68
3403 4371 9.201989 TGTCTTATATCAAGTTACAGAGGTGAT 57.798 33.333 0.00 0.00 33.63 3.06
3404 4372 8.589701 TGTCTTATATCAAGTTACAGAGGTGA 57.410 34.615 0.00 0.00 0.00 4.02
3405 4373 9.823647 AATGTCTTATATCAAGTTACAGAGGTG 57.176 33.333 0.00 0.00 0.00 4.00
3455 4423 8.823818 CCTCCGTATCAAAATATAAGACGTTTT 58.176 33.333 0.00 0.00 0.00 2.43
3456 4424 7.440255 CCCTCCGTATCAAAATATAAGACGTTT 59.560 37.037 0.00 0.00 0.00 3.60
3457 4425 6.927381 CCCTCCGTATCAAAATATAAGACGTT 59.073 38.462 0.00 0.00 0.00 3.99
3458 4426 6.266103 TCCCTCCGTATCAAAATATAAGACGT 59.734 38.462 0.00 0.00 0.00 4.34
3459 4427 6.684686 TCCCTCCGTATCAAAATATAAGACG 58.315 40.000 0.00 0.00 0.00 4.18
3460 4428 7.668492 ACTCCCTCCGTATCAAAATATAAGAC 58.332 38.462 0.00 0.00 0.00 3.01
3461 4429 7.850935 ACTCCCTCCGTATCAAAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
3462 4430 8.804204 AGTACTCCCTCCGTATCAAAATATAAG 58.196 37.037 0.00 0.00 0.00 1.73
3463 4431 8.716674 AGTACTCCCTCCGTATCAAAATATAA 57.283 34.615 0.00 0.00 0.00 0.98
3464 4432 9.812347 TTAGTACTCCCTCCGTATCAAAATATA 57.188 33.333 0.00 0.00 0.00 0.86
3465 4433 8.716674 TTAGTACTCCCTCCGTATCAAAATAT 57.283 34.615 0.00 0.00 0.00 1.28
3466 4434 8.537728 TTTAGTACTCCCTCCGTATCAAAATA 57.462 34.615 0.00 0.00 0.00 1.40
3467 4435 7.427989 TTTAGTACTCCCTCCGTATCAAAAT 57.572 36.000 0.00 0.00 0.00 1.82
3468 4436 6.855763 TTTAGTACTCCCTCCGTATCAAAA 57.144 37.500 0.00 0.00 0.00 2.44
3469 4437 6.855763 TTTTAGTACTCCCTCCGTATCAAA 57.144 37.500 0.00 0.00 0.00 2.69
3470 4438 8.537728 TTATTTTAGTACTCCCTCCGTATCAA 57.462 34.615 0.00 0.00 0.00 2.57
3471 4439 8.537728 TTTATTTTAGTACTCCCTCCGTATCA 57.462 34.615 0.00 0.00 0.00 2.15
3472 4440 8.854117 TCTTTATTTTAGTACTCCCTCCGTATC 58.146 37.037 0.00 0.00 0.00 2.24
3473 4441 8.773033 TCTTTATTTTAGTACTCCCTCCGTAT 57.227 34.615 0.00 0.00 0.00 3.06
3474 4442 8.055181 TCTCTTTATTTTAGTACTCCCTCCGTA 58.945 37.037 0.00 0.00 0.00 4.02
3475 4443 6.894103 TCTCTTTATTTTAGTACTCCCTCCGT 59.106 38.462 0.00 0.00 0.00 4.69
3476 4444 7.068470 ACTCTCTTTATTTTAGTACTCCCTCCG 59.932 40.741 0.00 0.00 0.00 4.63
3477 4445 8.308851 ACTCTCTTTATTTTAGTACTCCCTCC 57.691 38.462 0.00 0.00 0.00 4.30
3479 4447 9.994017 AGTACTCTCTTTATTTTAGTACTCCCT 57.006 33.333 0.00 0.00 46.04 4.20
3496 4464 9.469807 CGCATTCTATTTATTGAAGTACTCTCT 57.530 33.333 0.00 0.00 0.00 3.10
3497 4465 8.704234 CCGCATTCTATTTATTGAAGTACTCTC 58.296 37.037 0.00 0.00 0.00 3.20
3498 4466 8.421784 TCCGCATTCTATTTATTGAAGTACTCT 58.578 33.333 0.00 0.00 0.00 3.24
3499 4467 8.589335 TCCGCATTCTATTTATTGAAGTACTC 57.411 34.615 0.00 0.00 0.00 2.59
3500 4468 8.958119 TTCCGCATTCTATTTATTGAAGTACT 57.042 30.769 0.00 0.00 0.00 2.73
3501 4469 9.997482 TTTTCCGCATTCTATTTATTGAAGTAC 57.003 29.630 0.00 0.00 0.00 2.73
3503 4471 8.956426 TCTTTTCCGCATTCTATTTATTGAAGT 58.044 29.630 0.00 0.00 0.00 3.01
3514 4482 5.522460 CGGTCTTTATCTTTTCCGCATTCTA 59.478 40.000 0.00 0.00 0.00 2.10
3521 4489 8.193250 TCTTTATTCGGTCTTTATCTTTTCCG 57.807 34.615 0.00 0.00 39.40 4.30
3522 4490 9.163899 ACTCTTTATTCGGTCTTTATCTTTTCC 57.836 33.333 0.00 0.00 0.00 3.13
3541 4509 7.780745 TCCTGGGTTTGTTTTTCATACTCTTTA 59.219 33.333 0.00 0.00 31.35 1.85
3548 4516 5.450453 TCAGTCCTGGGTTTGTTTTTCATA 58.550 37.500 0.00 0.00 0.00 2.15
3565 4533 7.329471 GCTTGAATATTGTTTTTCCTTCAGTCC 59.671 37.037 0.00 0.00 0.00 3.85
3569 4537 8.991026 CAATGCTTGAATATTGTTTTTCCTTCA 58.009 29.630 0.00 0.00 31.36 3.02
3570 4538 9.206870 TCAATGCTTGAATATTGTTTTTCCTTC 57.793 29.630 0.00 0.00 36.59 3.46
3571 4539 8.992073 GTCAATGCTTGAATATTGTTTTTCCTT 58.008 29.630 0.00 0.00 42.15 3.36
3572 4540 8.370182 AGTCAATGCTTGAATATTGTTTTTCCT 58.630 29.630 0.00 0.00 42.15 3.36
3578 4806 7.816031 CAGGAAAGTCAATGCTTGAATATTGTT 59.184 33.333 0.00 0.00 42.15 2.83
3580 4808 7.318141 ACAGGAAAGTCAATGCTTGAATATTG 58.682 34.615 0.00 0.00 42.15 1.90
3588 4816 6.716628 TCTGATTTACAGGAAAGTCAATGCTT 59.283 34.615 0.00 0.00 45.76 3.91
3634 4869 3.347958 TTTTCATGTTTGGCTCGTGAC 57.652 42.857 0.00 0.00 31.71 3.67
3638 4873 4.383649 CAGATGTTTTTCATGTTTGGCTCG 59.616 41.667 0.00 0.00 36.83 5.03
3641 4876 4.148696 CGACAGATGTTTTTCATGTTTGGC 59.851 41.667 0.00 0.00 36.83 4.52
3642 4877 5.399301 GTCGACAGATGTTTTTCATGTTTGG 59.601 40.000 11.55 0.00 36.83 3.28
3661 4896 1.133025 CATTCATTGCCCTTGGTCGAC 59.867 52.381 7.13 7.13 0.00 4.20
3664 4899 0.826062 CCCATTCATTGCCCTTGGTC 59.174 55.000 0.00 0.00 0.00 4.02
3666 4901 0.826062 GACCCATTCATTGCCCTTGG 59.174 55.000 0.00 0.00 0.00 3.61
3671 4906 4.374399 GAAATCATGACCCATTCATTGCC 58.626 43.478 0.00 0.00 42.87 4.52
3676 4911 7.917730 AATAATGGAAATCATGACCCATTCA 57.082 32.000 28.04 19.52 43.66 2.57
3698 6734 5.505654 GCAAACTGCGCCAACTATGTATAAT 60.506 40.000 4.18 0.00 31.71 1.28
3702 6738 1.466950 GCAAACTGCGCCAACTATGTA 59.533 47.619 4.18 0.00 31.71 2.29
3724 6760 2.095853 CGTGCCAACTGGTTGTGATATC 59.904 50.000 11.73 0.00 38.85 1.63
3729 6765 1.355210 GTCGTGCCAACTGGTTGTG 59.645 57.895 11.73 5.47 38.85 3.33
3736 6772 1.603802 CTGAACAATGTCGTGCCAACT 59.396 47.619 0.00 0.00 0.00 3.16
3752 6788 7.763985 TCGATGCAGTAATATTGAGAAACTGAA 59.236 33.333 16.15 8.50 39.93 3.02
3755 6791 9.764363 TTATCGATGCAGTAATATTGAGAAACT 57.236 29.630 8.54 0.00 0.00 2.66
3795 6831 7.428826 AGATTTTCTGTTTTTCTGTAAGGCTG 58.571 34.615 0.00 0.00 0.00 4.85
3803 6839 7.701445 AGTGACTGAGATTTTCTGTTTTTCTG 58.299 34.615 0.00 0.00 38.01 3.02
3807 6843 8.398665 GTGTAAGTGACTGAGATTTTCTGTTTT 58.601 33.333 0.00 0.00 38.01 2.43
3818 6854 1.618837 GCCTGGTGTAAGTGACTGAGA 59.381 52.381 0.00 0.00 0.00 3.27
3838 6874 2.474410 AGTGCCCCGACTTTTCTTAG 57.526 50.000 0.00 0.00 0.00 2.18
3849 6885 0.463833 GGTCTGGAATAAGTGCCCCG 60.464 60.000 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.