Multiple sequence alignment - TraesCS1D01G044000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G044000 chr1D 100.000 6880 0 0 1 6880 22953156 22960035 0.000000e+00 12706.0
1 TraesCS1D01G044000 chr1D 100.000 2245 0 0 7178 9422 22960333 22962577 0.000000e+00 4146.0
2 TraesCS1D01G044000 chr1D 89.027 1686 124 24 1611 3249 377022780 377021109 0.000000e+00 2032.0
3 TraesCS1D01G044000 chr1D 87.389 1126 103 23 5781 6879 377018662 377017549 0.000000e+00 1256.0
4 TraesCS1D01G044000 chr1D 88.179 829 68 16 7196 8016 377017512 377016706 0.000000e+00 961.0
5 TraesCS1D01G044000 chr1D 86.053 674 71 13 1 655 114065997 114066666 0.000000e+00 702.0
6 TraesCS1D01G044000 chr1D 81.222 884 90 39 8000 8861 377016690 377015861 2.220000e-180 643.0
7 TraesCS1D01G044000 chr1D 90.928 485 33 7 3766 4244 377020495 377020016 7.980000e-180 641.0
8 TraesCS1D01G044000 chr1D 82.768 737 75 19 881 1598 377023744 377023041 2.250000e-170 610.0
9 TraesCS1D01G044000 chr1D 90.971 443 36 3 4729 5170 377020015 377019576 2.270000e-165 593.0
10 TraesCS1D01G044000 chr1D 92.383 407 22 4 5373 5776 377019495 377019095 1.060000e-158 571.0
11 TraesCS1D01G044000 chr1D 86.147 231 30 2 428 658 258377243 258377015 2.030000e-61 248.0
12 TraesCS1D01G044000 chr1B 92.901 2958 125 44 655 3573 39377227 39380138 0.000000e+00 4220.0
13 TraesCS1D01G044000 chr1B 87.179 2418 205 43 876 3249 503881938 503879582 0.000000e+00 2651.0
14 TraesCS1D01G044000 chr1B 97.573 1442 31 2 3766 5207 39380798 39382235 0.000000e+00 2466.0
15 TraesCS1D01G044000 chr1B 96.228 1511 46 4 5370 6880 39382214 39383713 0.000000e+00 2464.0
16 TraesCS1D01G044000 chr1B 89.863 1529 56 28 7178 8697 39383733 39385171 0.000000e+00 1873.0
17 TraesCS1D01G044000 chr1B 82.186 1656 150 70 7264 8861 503873120 503871552 0.000000e+00 1290.0
18 TraesCS1D01G044000 chr1B 86.708 1121 113 23 5781 6879 503877119 503876013 0.000000e+00 1212.0
19 TraesCS1D01G044000 chr1B 95.872 436 12 3 3333 3768 39380313 39380742 0.000000e+00 701.0
20 TraesCS1D01G044000 chr1B 91.340 485 31 7 3766 4244 503878955 503878476 0.000000e+00 652.0
21 TraesCS1D01G044000 chr1B 90.971 443 36 3 4729 5170 503878475 503878036 2.270000e-165 593.0
22 TraesCS1D01G044000 chr1B 90.534 412 23 6 5373 5776 503877955 503877552 1.800000e-146 531.0
23 TraesCS1D01G044000 chr1B 90.805 261 11 4 8799 9047 39385172 39385431 4.220000e-88 337.0
24 TraesCS1D01G044000 chr1B 97.714 175 4 0 5207 5381 158536305 158536131 1.540000e-77 302.0
25 TraesCS1D01G044000 chr1B 87.500 128 16 0 1 128 622988076 622987949 2.120000e-31 148.0
26 TraesCS1D01G044000 chr1B 98.182 55 1 0 9049 9103 39385515 39385569 7.790000e-16 97.1
27 TraesCS1D01G044000 chr1A 86.457 2444 197 45 872 3249 477667359 477664984 0.000000e+00 2556.0
28 TraesCS1D01G044000 chr1A 96.492 1511 33 6 5370 6880 24137297 24138787 0.000000e+00 2479.0
29 TraesCS1D01G044000 chr1A 96.416 865 27 3 1958 2820 24133566 24134428 0.000000e+00 1423.0
30 TraesCS1D01G044000 chr1A 90.442 1109 52 19 746 1844 24132473 24133537 0.000000e+00 1411.0
31 TraesCS1D01G044000 chr1A 81.913 1725 167 72 7196 8861 477656342 477654704 0.000000e+00 1323.0
32 TraesCS1D01G044000 chr1A 98.058 721 10 2 3766 4486 24135960 24136676 0.000000e+00 1251.0
33 TraesCS1D01G044000 chr1A 96.047 759 25 4 2819 3573 24134552 24135309 0.000000e+00 1230.0
34 TraesCS1D01G044000 chr1A 87.700 1065 104 19 5781 6832 477659251 477658201 0.000000e+00 1216.0
35 TraesCS1D01G044000 chr1A 98.134 643 11 1 4566 5207 24136676 24137318 0.000000e+00 1120.0
36 TraesCS1D01G044000 chr1A 91.993 612 18 6 7305 7916 24138928 24139508 0.000000e+00 830.0
37 TraesCS1D01G044000 chr1A 96.789 436 14 0 3333 3768 24135484 24135919 0.000000e+00 728.0
38 TraesCS1D01G044000 chr1A 91.648 443 33 3 4729 5170 477660592 477660153 2.250000e-170 610.0
39 TraesCS1D01G044000 chr1A 91.892 407 24 4 5373 5776 477660072 477659672 2.300000e-155 560.0
40 TraesCS1D01G044000 chr1A 93.294 343 13 4 8380 8713 24139923 24140264 1.830000e-136 497.0
41 TraesCS1D01G044000 chr1A 93.363 226 13 1 9197 9420 24140615 24140840 5.450000e-87 333.0
42 TraesCS1D01G044000 chr1A 95.181 166 8 0 8936 9101 24140390 24140555 7.260000e-66 263.0
43 TraesCS1D01G044000 chr1A 92.481 133 5 3 8770 8901 24140261 24140389 1.620000e-42 185.0
44 TraesCS1D01G044000 chr1A 94.667 75 3 1 7207 7280 24138854 24138928 2.150000e-21 115.0
45 TraesCS1D01G044000 chr7B 88.632 1900 143 41 807 2690 511919932 511921774 0.000000e+00 2244.0
46 TraesCS1D01G044000 chr7B 88.421 1900 147 38 807 2690 511812728 511814570 0.000000e+00 2222.0
47 TraesCS1D01G044000 chr7B 88.263 1900 156 37 807 2690 511779099 511780947 0.000000e+00 2211.0
48 TraesCS1D01G044000 chr7B 88.158 1900 152 41 807 2690 511844795 511846637 0.000000e+00 2194.0
49 TraesCS1D01G044000 chr7B 93.699 1476 66 14 5370 6840 511923460 511924913 0.000000e+00 2185.0
50 TraesCS1D01G044000 chr7B 91.159 1346 85 13 2239 3573 511617207 511618529 0.000000e+00 1796.0
51 TraesCS1D01G044000 chr7B 94.027 1172 53 8 5374 6541 511620573 511621731 0.000000e+00 1760.0
52 TraesCS1D01G044000 chr7B 90.332 1324 64 33 7201 8510 511924908 511926181 0.000000e+00 1677.0
53 TraesCS1D01G044000 chr7B 90.130 1307 67 31 7201 8496 511858196 511859451 0.000000e+00 1642.0
54 TraesCS1D01G044000 chr7B 89.700 1301 69 34 7221 8510 511622873 511624119 0.000000e+00 1600.0
55 TraesCS1D01G044000 chr7B 85.825 1291 95 45 814 2085 511615983 511617204 0.000000e+00 1290.0
56 TraesCS1D01G044000 chr7B 93.452 733 28 8 3766 4481 511619165 511619894 0.000000e+00 1070.0
57 TraesCS1D01G044000 chr7B 93.288 730 33 8 3766 4481 511856903 511857630 0.000000e+00 1062.0
58 TraesCS1D01G044000 chr7B 92.740 730 34 9 3766 4481 511782415 511783139 0.000000e+00 1037.0
59 TraesCS1D01G044000 chr7B 92.603 730 35 9 3766 4481 511816038 511816762 0.000000e+00 1031.0
60 TraesCS1D01G044000 chr7B 93.554 605 30 2 4566 5170 511619896 511620491 0.000000e+00 893.0
61 TraesCS1D01G044000 chr7B 93.792 451 26 2 3109 3559 511814927 511815375 0.000000e+00 676.0
62 TraesCS1D01G044000 chr7B 93.570 451 28 1 3109 3559 511781304 511781753 0.000000e+00 671.0
63 TraesCS1D01G044000 chr7B 92.324 469 30 5 3109 3573 511922131 511922597 0.000000e+00 662.0
64 TraesCS1D01G044000 chr7B 94.737 380 20 0 4791 5170 511923003 511923382 8.150000e-165 592.0
65 TraesCS1D01G044000 chr7B 92.183 371 16 6 4566 4936 511783141 511783498 6.530000e-141 512.0
66 TraesCS1D01G044000 chr7B 92.183 371 16 6 4566 4936 511816764 511817121 6.530000e-141 512.0
67 TraesCS1D01G044000 chr7B 90.833 360 20 5 6523 6873 511622312 511622667 3.980000e-128 470.0
68 TraesCS1D01G044000 chr7B 90.164 366 24 6 2734 3089 511780954 511781317 5.150000e-127 466.0
69 TraesCS1D01G044000 chr7B 90.305 361 23 6 2734 3084 511814577 511814935 6.670000e-126 462.0
70 TraesCS1D01G044000 chr7B 89.344 366 27 6 2734 3089 511921781 511922144 5.190000e-122 449.0
71 TraesCS1D01G044000 chr7B 86.400 250 16 8 8296 8533 511926847 511927090 3.380000e-64 257.0
72 TraesCS1D01G044000 chr7B 78.133 375 35 28 807 1168 511843946 511844286 2.680000e-45 195.0
73 TraesCS1D01G044000 chr7B 89.922 129 11 2 1 128 98734068 98734195 2.100000e-36 165.0
74 TraesCS1D01G044000 chr7B 97.468 79 2 0 4566 4644 511857632 511857710 1.650000e-27 135.0
75 TraesCS1D01G044000 chr7B 88.333 60 5 2 70 128 337376015 337376073 4.720000e-08 71.3
76 TraesCS1D01G044000 chr7B 93.333 45 3 0 5163 5207 511923437 511923481 6.110000e-07 67.6
77 TraesCS1D01G044000 chr7D 93.303 1523 67 15 5370 6879 484721064 484722564 0.000000e+00 2215.0
78 TraesCS1D01G044000 chr7D 84.550 1301 105 46 807 2085 484704214 484705440 0.000000e+00 1201.0
79 TraesCS1D01G044000 chr7D 92.779 734 34 6 3766 4481 484719647 484720379 0.000000e+00 1044.0
80 TraesCS1D01G044000 chr7D 91.595 702 36 7 2860 3559 484718098 484718778 0.000000e+00 948.0
81 TraesCS1D01G044000 chr7D 94.581 609 26 4 4566 5170 484720381 484720986 0.000000e+00 935.0
82 TraesCS1D01G044000 chr7D 89.773 616 38 11 7337 7935 484722611 484723218 0.000000e+00 765.0
83 TraesCS1D01G044000 chr7D 89.120 432 24 9 8024 8454 484723254 484723663 5.040000e-142 516.0
84 TraesCS1D01G044000 chr7D 98.936 94 0 1 4478 4571 629185757 629185849 5.850000e-37 167.0
85 TraesCS1D01G044000 chr7D 94.030 67 4 0 8430 8496 484723666 484723732 1.670000e-17 102.0
86 TraesCS1D01G044000 chr7D 93.333 45 3 0 5163 5207 484721041 484721085 6.110000e-07 67.6
87 TraesCS1D01G044000 chr7A 87.535 1075 60 32 7474 8535 553033643 553034656 0.000000e+00 1175.0
88 TraesCS1D01G044000 chr7A 92.727 715 39 6 3766 4470 552975581 552976292 0.000000e+00 1020.0
89 TraesCS1D01G044000 chr7A 85.917 774 81 13 1134 1903 552950819 552951568 0.000000e+00 800.0
90 TraesCS1D01G044000 chr7A 91.319 599 27 2 4574 5170 552976289 552976864 0.000000e+00 795.0
91 TraesCS1D01G044000 chr7A 93.969 514 26 4 5370 5881 552976945 552977455 0.000000e+00 773.0
92 TraesCS1D01G044000 chr7A 94.545 440 22 1 5888 6325 552977756 552978195 0.000000e+00 678.0
93 TraesCS1D01G044000 chr7A 91.429 420 24 6 2680 3089 552973702 552974119 4.940000e-157 566.0
94 TraesCS1D01G044000 chr7A 92.045 352 18 3 6446 6789 552987201 552987550 3.960000e-133 486.0
95 TraesCS1D01G044000 chr7A 91.818 330 26 1 3096 3425 552974093 552974421 8.620000e-125 459.0
96 TraesCS1D01G044000 chr7A 94.355 248 12 2 3523 3768 552975263 552975510 6.910000e-101 379.0
97 TraesCS1D01G044000 chr7A 98.295 176 2 1 5197 5372 48816431 48816605 3.310000e-79 307.0
98 TraesCS1D01G044000 chr7A 98.837 172 1 1 5205 5375 426576422 426576593 1.190000e-78 305.0
99 TraesCS1D01G044000 chr7A 93.820 178 7 2 7250 7425 552991027 552991202 2.020000e-66 265.0
100 TraesCS1D01G044000 chr7A 98.947 95 1 0 4477 4571 47050821 47050727 4.520000e-38 171.0
101 TraesCS1D01G044000 chr7A 92.308 91 7 0 6358 6448 552978194 552978284 7.680000e-26 130.0
102 TraesCS1D01G044000 chr7A 93.023 43 2 1 5163 5205 552976923 552976964 2.840000e-05 62.1
103 TraesCS1D01G044000 chrUn 93.401 788 46 4 1905 2690 387364364 387365147 0.000000e+00 1162.0
104 TraesCS1D01G044000 chrUn 97.895 95 2 0 4476 4570 27602657 27602563 2.100000e-36 165.0
105 TraesCS1D01G044000 chr2D 85.652 690 64 15 1 657 618201027 618201714 0.000000e+00 693.0
106 TraesCS1D01G044000 chr2D 94.000 150 7 2 3619 3768 380416695 380416548 9.520000e-55 226.0
107 TraesCS1D01G044000 chr2D 93.333 150 9 1 3619 3768 243656145 243656293 4.430000e-53 220.0
108 TraesCS1D01G044000 chr6A 89.139 534 56 2 122 653 497472337 497472870 0.000000e+00 664.0
109 TraesCS1D01G044000 chr6A 94.631 149 7 1 3620 3768 381088872 381088725 7.360000e-56 230.0
110 TraesCS1D01G044000 chr6A 88.372 86 7 3 655 739 555438103 555438186 6.020000e-17 100.0
111 TraesCS1D01G044000 chr6A 89.744 78 7 1 655 731 606349083 606349006 2.170000e-16 99.0
112 TraesCS1D01G044000 chr2B 88.665 547 48 4 122 657 754781434 754781977 0.000000e+00 654.0
113 TraesCS1D01G044000 chr2B 89.831 59 6 0 70 128 754781433 754781375 1.010000e-09 76.8
114 TraesCS1D01G044000 chr2A 92.744 441 29 3 122 560 749056565 749057004 1.330000e-177 634.0
115 TraesCS1D01G044000 chr2A 98.844 173 2 0 5206 5378 166842427 166842255 9.190000e-80 309.0
116 TraesCS1D01G044000 chr2A 98.266 173 3 0 5200 5372 17206750 17206578 4.280000e-78 303.0
117 TraesCS1D01G044000 chr2A 87.209 86 9 2 655 739 312638646 312638562 7.790000e-16 97.1
118 TraesCS1D01G044000 chr3D 87.703 553 49 9 122 660 496230156 496229609 2.230000e-175 627.0
119 TraesCS1D01G044000 chr3D 89.831 177 18 0 479 655 433433707 433433531 2.650000e-55 228.0
120 TraesCS1D01G044000 chr3D 94.000 150 8 1 3619 3768 426867621 426867473 9.520000e-55 226.0
121 TraesCS1D01G044000 chr5B 91.874 443 23 5 122 561 447885172 447885604 2.910000e-169 606.0
122 TraesCS1D01G044000 chr5B 96.954 197 1 4 5194 5390 320413649 320413840 9.120000e-85 326.0
123 TraesCS1D01G044000 chr5B 96.939 98 3 0 4474 4571 56586049 56585952 2.100000e-36 165.0
124 TraesCS1D01G044000 chr5B 88.372 129 13 2 1 128 447885014 447885141 4.560000e-33 154.0
125 TraesCS1D01G044000 chr5B 88.571 105 12 0 1 105 495834237 495834341 2.760000e-25 128.0
126 TraesCS1D01G044000 chr5B 91.525 59 5 0 70 128 447885171 447885113 2.180000e-11 82.4
127 TraesCS1D01G044000 chr3B 87.477 535 55 6 68 590 682914184 682913650 2.910000e-169 606.0
128 TraesCS1D01G044000 chr3B 99.408 169 1 0 5207 5375 537691267 537691435 3.310000e-79 307.0
129 TraesCS1D01G044000 chr5A 91.051 447 35 3 117 560 582975521 582975965 4.870000e-167 599.0
130 TraesCS1D01G044000 chr5A 99.398 166 1 0 5207 5372 439420909 439421074 1.540000e-77 302.0
131 TraesCS1D01G044000 chr5A 88.750 80 8 1 653 731 6850036 6850115 7.790000e-16 97.1
132 TraesCS1D01G044000 chr5A 86.517 89 9 3 655 742 37625698 37625784 2.800000e-15 95.3
133 TraesCS1D01G044000 chr5A 88.333 60 5 2 70 128 582975527 582975469 4.720000e-08 71.3
134 TraesCS1D01G044000 chr4B 85.688 538 50 9 122 657 654881757 654881245 8.320000e-150 542.0
135 TraesCS1D01G044000 chr4B 91.477 176 14 1 483 658 80583884 80583710 3.400000e-59 241.0
136 TraesCS1D01G044000 chr4B 89.831 177 18 0 479 655 74669789 74669965 2.650000e-55 228.0
137 TraesCS1D01G044000 chr6B 99.398 166 1 0 5207 5372 159369585 159369750 1.540000e-77 302.0
138 TraesCS1D01G044000 chr6B 91.011 178 16 0 480 657 719493060 719493237 3.400000e-59 241.0
139 TraesCS1D01G044000 chr6B 97.959 98 2 0 4474 4571 465141396 465141493 4.520000e-38 171.0
140 TraesCS1D01G044000 chr4D 92.222 180 14 0 479 658 28472300 28472121 1.210000e-63 255.0
141 TraesCS1D01G044000 chr4D 100.000 28 0 0 751 778 75796982 75797009 1.700000e-02 52.8
142 TraesCS1D01G044000 chr5D 95.333 150 6 1 3619 3768 152753943 152754091 4.400000e-58 237.0
143 TraesCS1D01G044000 chr6D 93.960 149 8 1 3620 3768 267532979 267532832 3.420000e-54 224.0
144 TraesCS1D01G044000 chr6D 96.875 96 3 0 4475 4570 291718661 291718566 2.720000e-35 161.0
145 TraesCS1D01G044000 chr4A 96.939 98 2 1 4472 4569 452252154 452252058 7.570000e-36 163.0
146 TraesCS1D01G044000 chr4A 85.714 91 11 2 655 743 65025416 65025506 2.800000e-15 95.3
147 TraesCS1D01G044000 chr4A 86.486 74 9 1 55 127 690583275 690583202 7.840000e-11 80.5
148 TraesCS1D01G044000 chr3A 95.876 97 4 0 4475 4571 549639099 549639195 3.520000e-34 158.0
149 TraesCS1D01G044000 chr3A 86.667 90 11 1 655 743 92391745 92391656 2.170000e-16 99.0
150 TraesCS1D01G044000 chr3A 87.209 86 9 2 655 739 475279857 475279773 7.790000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G044000 chr1D 22953156 22962577 9421 False 8426.000000 12706 100.000000 1 9422 2 chr1D.!!$F2 9421
1 TraesCS1D01G044000 chr1D 377015861 377023744 7883 True 913.375000 2032 87.858375 881 8861 8 chr1D.!!$R2 7980
2 TraesCS1D01G044000 chr1D 114065997 114066666 669 False 702.000000 702 86.053000 1 655 1 chr1D.!!$F1 654
3 TraesCS1D01G044000 chr1B 39377227 39385569 8342 False 1736.871429 4220 94.489143 655 9103 7 chr1B.!!$F1 8448
4 TraesCS1D01G044000 chr1B 503871552 503881938 10386 True 1154.833333 2651 88.153000 876 8861 6 chr1B.!!$R3 7985
5 TraesCS1D01G044000 chr1A 477664984 477667359 2375 True 2556.000000 2556 86.457000 872 3249 1 chr1A.!!$R1 2377
6 TraesCS1D01G044000 chr1A 477654704 477660592 5888 True 927.250000 1323 88.288250 4729 8861 4 chr1A.!!$R2 4132
7 TraesCS1D01G044000 chr1A 24132473 24140840 8367 False 912.692308 2479 94.873615 746 9420 13 chr1A.!!$F1 8674
8 TraesCS1D01G044000 chr7B 511615983 511624119 8136 False 1268.428571 1796 91.221429 814 8510 7 chr7B.!!$F3 7696
9 TraesCS1D01G044000 chr7B 511843946 511846637 2691 False 1194.500000 2194 83.145500 807 2690 2 chr7B.!!$F6 1883
10 TraesCS1D01G044000 chr7B 511919932 511927090 7158 False 1016.700000 2244 91.100125 807 8533 8 chr7B.!!$F8 7726
11 TraesCS1D01G044000 chr7B 511812728 511817121 4393 False 980.600000 2222 91.460800 807 4936 5 chr7B.!!$F5 4129
12 TraesCS1D01G044000 chr7B 511779099 511783498 4399 False 979.400000 2211 91.384000 807 4936 5 chr7B.!!$F4 4129
13 TraesCS1D01G044000 chr7B 511856903 511859451 2548 False 946.333333 1642 93.628667 3766 8496 3 chr7B.!!$F7 4730
14 TraesCS1D01G044000 chr7D 484704214 484705440 1226 False 1201.000000 1201 84.550000 807 2085 1 chr7D.!!$F1 1278
15 TraesCS1D01G044000 chr7D 484718098 484723732 5634 False 824.075000 2215 92.314250 2860 8496 8 chr7D.!!$F3 5636
16 TraesCS1D01G044000 chr7A 553033643 553034656 1013 False 1175.000000 1175 87.535000 7474 8535 1 chr7A.!!$F4 1061
17 TraesCS1D01G044000 chr7A 552950819 552951568 749 False 800.000000 800 85.917000 1134 1903 1 chr7A.!!$F3 769
18 TraesCS1D01G044000 chr7A 552973702 552978284 4582 False 540.233333 1020 92.832556 2680 6448 9 chr7A.!!$F5 3768
19 TraesCS1D01G044000 chr7A 552987201 552991202 4001 False 375.500000 486 92.932500 6446 7425 2 chr7A.!!$F6 979
20 TraesCS1D01G044000 chrUn 387364364 387365147 783 False 1162.000000 1162 93.401000 1905 2690 1 chrUn.!!$F1 785
21 TraesCS1D01G044000 chr2D 618201027 618201714 687 False 693.000000 693 85.652000 1 657 1 chr2D.!!$F2 656
22 TraesCS1D01G044000 chr6A 497472337 497472870 533 False 664.000000 664 89.139000 122 653 1 chr6A.!!$F1 531
23 TraesCS1D01G044000 chr2B 754781434 754781977 543 False 654.000000 654 88.665000 122 657 1 chr2B.!!$F1 535
24 TraesCS1D01G044000 chr3D 496229609 496230156 547 True 627.000000 627 87.703000 122 660 1 chr3D.!!$R3 538
25 TraesCS1D01G044000 chr5B 447885014 447885604 590 False 380.000000 606 90.123000 1 561 2 chr5B.!!$F3 560
26 TraesCS1D01G044000 chr3B 682913650 682914184 534 True 606.000000 606 87.477000 68 590 1 chr3B.!!$R1 522
27 TraesCS1D01G044000 chr4B 654881245 654881757 512 True 542.000000 542 85.688000 122 657 1 chr4B.!!$R2 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 647 0.109781 CAAATTTCGTGACCGGGCAG 60.110 55.000 12.52 5.06 33.95 4.85 F
1061 1162 0.393077 CAGCCCATCCGTAACCCTAG 59.607 60.000 0.00 0.00 0.00 3.02 F
1617 2836 1.134560 CTGTAGGTTAGGCCTCACGAC 59.865 57.143 9.68 11.19 46.96 4.34 F
3126 4562 0.036875 GCAAGTGGCTCTAACCTGGT 59.963 55.000 0.00 0.00 40.25 4.00 F
3722 6204 2.086869 CCATGAGTTGGTTGCGAGATT 58.913 47.619 0.00 0.00 40.99 2.40 F
5259 7962 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85 F
5290 7993 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16 F
5333 8036 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95 F
5352 8055 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85 F
5362 8065 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45 F
5363 8066 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51 F
5373 8076 0.685097 TGCACTGGGTCTGTCCTTAC 59.315 55.000 0.00 0.00 36.25 2.34 F
7949 20187 0.099436 GACGATGACCTTGCATTGGC 59.901 55.000 6.21 0.00 41.68 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 2943 1.470098 CTTATGGTTGCTGGACTGTGC 59.530 52.381 0.00 0.0 0.00 4.57 R
3032 4439 2.332063 ACCAGATTATTGCCACTCCG 57.668 50.000 0.00 0.0 0.00 4.63 R
3175 4611 3.872696 TGCTGTGATGATACCGTCAAAT 58.127 40.909 0.00 0.0 40.97 2.32 R
4789 7419 3.475494 ACGGTCACACCCACAGCA 61.475 61.111 0.00 0.0 33.75 4.41 R
5271 7974 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.0 40.08 4.58 R
6470 9933 2.879103 GGAACCTTCCCATGACTCAA 57.121 50.000 0.00 0.0 41.62 3.02 R
7199 13171 4.991056 CGTTCATTATAGTCATCCCTGTGG 59.009 45.833 0.00 0.0 0.00 4.17 R
7360 19565 4.158394 ACAAAAGCCAGCCTAACATACATG 59.842 41.667 0.00 0.0 0.00 3.21 R
7729 19949 1.558756 AGCCAGCCATATCCTCTATGC 59.441 52.381 0.00 0.0 0.00 3.14 R
7793 20013 9.334947 CTCATAGTCCTGATGATAAAACACAAT 57.665 33.333 0.00 0.0 32.96 2.71 R
7906 20128 4.783764 AAGGCATTAGTGTAACCAAAGC 57.216 40.909 0.00 0.0 37.80 3.51 R
8033 20304 2.025898 CATGACAAGGGCACATGCATA 58.974 47.619 0.00 0.0 44.36 3.14 R
8782 21383 0.612229 TCCTCCGTCGTCTCTACAGT 59.388 55.000 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.902608 TCCAGAAGGGACAAGCTTCTA 58.097 47.619 0.00 0.00 42.15 2.10
76 77 6.198650 TCTAACATCATTGCATCCTTTGTG 57.801 37.500 0.00 0.00 0.00 3.33
174 215 3.182173 CACGTCCATGCATGAAAACAAAC 59.818 43.478 28.31 11.96 0.00 2.93
401 445 2.509336 GCCGACGATGTGGGACTG 60.509 66.667 1.90 0.00 33.13 3.51
443 487 0.820871 GATGGAGGAGCTTCTGTCGT 59.179 55.000 0.00 0.00 0.00 4.34
568 622 4.016706 CGTTTGAGGGGCCCGTCT 62.017 66.667 37.28 22.06 0.00 4.18
569 623 2.359975 GTTTGAGGGGCCCGTCTG 60.360 66.667 37.28 0.00 0.00 3.51
570 624 3.646715 TTTGAGGGGCCCGTCTGG 61.647 66.667 37.28 0.00 37.09 3.86
582 636 0.802494 CCGTCTGGGTCCAAATTTCG 59.198 55.000 0.00 0.00 0.00 3.46
583 637 1.519408 CGTCTGGGTCCAAATTTCGT 58.481 50.000 0.00 0.00 0.00 3.85
584 638 1.196808 CGTCTGGGTCCAAATTTCGTG 59.803 52.381 0.00 0.00 0.00 4.35
585 639 2.500229 GTCTGGGTCCAAATTTCGTGA 58.500 47.619 0.00 0.00 0.00 4.35
586 640 2.225727 GTCTGGGTCCAAATTTCGTGAC 59.774 50.000 0.00 0.00 0.00 3.67
587 641 1.539827 CTGGGTCCAAATTTCGTGACC 59.460 52.381 17.15 17.15 45.25 4.02
588 642 0.519961 GGGTCCAAATTTCGTGACCG 59.480 55.000 18.11 0.00 46.60 4.79
589 643 0.519961 GGTCCAAATTTCGTGACCGG 59.480 55.000 0.00 0.00 38.07 5.28
590 644 0.519961 GTCCAAATTTCGTGACCGGG 59.480 55.000 6.32 0.00 33.95 5.73
591 645 1.211709 CCAAATTTCGTGACCGGGC 59.788 57.895 6.32 1.57 33.95 6.13
592 646 1.519751 CCAAATTTCGTGACCGGGCA 61.520 55.000 5.41 5.41 33.95 5.36
593 647 0.109781 CAAATTTCGTGACCGGGCAG 60.110 55.000 12.52 5.06 33.95 4.85
594 648 0.536460 AAATTTCGTGACCGGGCAGT 60.536 50.000 12.52 0.00 33.95 4.40
595 649 1.234615 AATTTCGTGACCGGGCAGTG 61.235 55.000 12.52 6.71 33.95 3.66
596 650 2.107041 ATTTCGTGACCGGGCAGTGA 62.107 55.000 12.52 9.79 33.95 3.41
597 651 2.981977 TTTCGTGACCGGGCAGTGAC 62.982 60.000 12.52 0.00 33.95 3.67
623 677 4.697756 CTGCCCGGGCGTTTGAGA 62.698 66.667 39.00 20.00 45.51 3.27
636 690 3.831715 GTTTGAGACGGATTTGAAGGG 57.168 47.619 0.00 0.00 0.00 3.95
637 691 3.146847 GTTTGAGACGGATTTGAAGGGT 58.853 45.455 0.00 0.00 0.00 4.34
638 692 3.502123 TTGAGACGGATTTGAAGGGTT 57.498 42.857 0.00 0.00 0.00 4.11
639 693 3.053831 TGAGACGGATTTGAAGGGTTC 57.946 47.619 0.00 0.00 0.00 3.62
640 694 2.000447 GAGACGGATTTGAAGGGTTCG 59.000 52.381 0.00 0.00 0.00 3.95
641 695 1.084289 GACGGATTTGAAGGGTTCGG 58.916 55.000 0.00 0.00 0.00 4.30
642 696 0.399075 ACGGATTTGAAGGGTTCGGT 59.601 50.000 0.00 0.00 0.00 4.69
643 697 1.202842 ACGGATTTGAAGGGTTCGGTT 60.203 47.619 0.00 0.00 0.00 4.44
644 698 2.038820 ACGGATTTGAAGGGTTCGGTTA 59.961 45.455 0.00 0.00 0.00 2.85
645 699 3.275999 CGGATTTGAAGGGTTCGGTTAT 58.724 45.455 0.00 0.00 0.00 1.89
646 700 4.080975 ACGGATTTGAAGGGTTCGGTTATA 60.081 41.667 0.00 0.00 0.00 0.98
647 701 4.510340 CGGATTTGAAGGGTTCGGTTATAG 59.490 45.833 0.00 0.00 0.00 1.31
648 702 5.677567 GGATTTGAAGGGTTCGGTTATAGA 58.322 41.667 0.00 0.00 0.00 1.98
649 703 6.296803 GGATTTGAAGGGTTCGGTTATAGAT 58.703 40.000 0.00 0.00 0.00 1.98
650 704 6.204882 GGATTTGAAGGGTTCGGTTATAGATG 59.795 42.308 0.00 0.00 0.00 2.90
651 705 4.067972 TGAAGGGTTCGGTTATAGATGC 57.932 45.455 0.00 0.00 0.00 3.91
652 706 3.709653 TGAAGGGTTCGGTTATAGATGCT 59.290 43.478 0.00 0.00 0.00 3.79
653 707 4.202223 TGAAGGGTTCGGTTATAGATGCTC 60.202 45.833 0.00 0.00 0.00 4.26
654 708 3.577919 AGGGTTCGGTTATAGATGCTCT 58.422 45.455 0.00 0.00 0.00 4.09
655 709 4.737578 AGGGTTCGGTTATAGATGCTCTA 58.262 43.478 0.00 0.00 32.87 2.43
656 710 5.145564 AGGGTTCGGTTATAGATGCTCTAA 58.854 41.667 0.00 0.00 31.96 2.10
657 711 5.780793 AGGGTTCGGTTATAGATGCTCTAAT 59.219 40.000 0.00 0.00 31.96 1.73
658 712 5.869888 GGGTTCGGTTATAGATGCTCTAATG 59.130 44.000 0.00 0.00 31.96 1.90
659 713 6.456501 GGTTCGGTTATAGATGCTCTAATGT 58.543 40.000 0.00 0.00 31.96 2.71
660 714 7.309621 GGGTTCGGTTATAGATGCTCTAATGTA 60.310 40.741 0.00 0.00 31.96 2.29
661 715 7.755822 GGTTCGGTTATAGATGCTCTAATGTAG 59.244 40.741 0.00 0.00 31.96 2.74
664 718 8.678199 TCGGTTATAGATGCTCTAATGTAGATG 58.322 37.037 0.00 0.00 31.96 2.90
700 754 5.503002 GGGTTGTAAATTAGACTAGGGCAA 58.497 41.667 0.00 0.00 0.00 4.52
709 763 1.203313 AGACTAGGGCAAGAGTTGGGA 60.203 52.381 0.00 0.00 0.00 4.37
718 772 4.248058 GGCAAGAGTTGGGATTTGAAATG 58.752 43.478 0.00 0.00 0.00 2.32
770 833 3.331150 TCGGTTTGCATGTAATTCGTCT 58.669 40.909 14.73 0.00 0.00 4.18
795 858 3.193395 TGTATGAAGTGGGAGTGGGTA 57.807 47.619 0.00 0.00 0.00 3.69
799 862 3.955524 TGAAGTGGGAGTGGGTAAAAA 57.044 42.857 0.00 0.00 0.00 1.94
954 1041 2.204624 TCCCCTCCCCTCCTCTCA 60.205 66.667 0.00 0.00 0.00 3.27
997 1089 4.135153 CTCCTCCACCGACGCCAG 62.135 72.222 0.00 0.00 0.00 4.85
1052 1153 4.181010 CTCCCCACAGCCCATCCG 62.181 72.222 0.00 0.00 0.00 4.18
1061 1162 0.393077 CAGCCCATCCGTAACCCTAG 59.607 60.000 0.00 0.00 0.00 3.02
1227 2189 2.717139 GATTCCGACCCTCATCCCGC 62.717 65.000 0.00 0.00 0.00 6.13
1228 2190 4.770362 TCCGACCCTCATCCCGCA 62.770 66.667 0.00 0.00 0.00 5.69
1587 2558 7.095649 GGATTTATTGTTCACAAAGGTTGCTTC 60.096 37.037 0.00 0.00 39.55 3.86
1617 2836 1.134560 CTGTAGGTTAGGCCTCACGAC 59.865 57.143 9.68 11.19 46.96 4.34
1665 2887 3.428862 GGTTTGGCATAGTGGTGCATTAC 60.429 47.826 0.00 0.00 46.81 1.89
1677 2902 3.181455 TGGTGCATTACGATAATCCAGCT 60.181 43.478 0.00 0.00 0.00 4.24
1718 2943 2.039405 GGCTCCAAGCTCAGCACAG 61.039 63.158 0.00 0.00 41.99 3.66
1738 2963 1.470098 GCACAGTCCAGCAACCATAAG 59.530 52.381 0.00 0.00 0.00 1.73
1803 3029 6.883756 TCATAAGCACCAATGTTTATCTCACA 59.116 34.615 0.00 0.00 39.44 3.58
1848 3079 6.539826 TCATATTCTGTTGTGCTAACTCATGG 59.460 38.462 0.00 0.00 0.00 3.66
2069 3334 5.950549 ACTCTGAGGATGCATTTGATTCTTT 59.049 36.000 9.85 0.00 0.00 2.52
2077 3342 6.074142 GGATGCATTTGATTCTTTTATTCGGC 60.074 38.462 0.00 0.00 0.00 5.54
2140 3405 5.854010 ACCAATACTCTCTCGAGCATTAA 57.146 39.130 7.81 0.00 41.09 1.40
2338 3605 4.371786 TGCCGAGAAGTGCTTTGATATAG 58.628 43.478 0.00 0.00 0.00 1.31
2428 3696 2.293955 GGGTACTGCCGAGTATCTTCTC 59.706 54.545 0.00 0.00 36.21 2.87
2742 4013 5.106712 CGCGGCATATTATGTTTCCAAGTAT 60.107 40.000 0.00 0.00 0.00 2.12
2774 4045 9.615660 TGGTGGTATTTCCTGATATACTCTTAT 57.384 33.333 7.40 0.00 37.07 1.73
2810 4088 5.847111 ATAATCCTGTACACGCTTCAGTA 57.153 39.130 0.00 0.00 0.00 2.74
2813 4091 3.845178 TCCTGTACACGCTTCAGTAATG 58.155 45.455 0.00 0.00 0.00 1.90
2858 4261 1.792949 CCGAAGTTCTACTGTGTGCAC 59.207 52.381 10.75 10.75 0.00 4.57
2990 4397 5.070001 TGTCACCTAATTGGGAAGTCAAAG 58.930 41.667 15.76 0.00 41.11 2.77
3032 4439 2.489938 TTCCAGTCTTACATGGGTGC 57.510 50.000 0.00 0.00 37.19 5.01
3126 4562 0.036875 GCAAGTGGCTCTAACCTGGT 59.963 55.000 0.00 0.00 40.25 4.00
3141 4577 9.298774 CTCTAACCTGGTAATTAGTAACGAAAG 57.701 37.037 0.00 0.00 31.53 2.62
3175 4611 6.148976 CGAAACATATCTACGTGGGATCTAGA 59.851 42.308 0.00 0.00 0.00 2.43
3298 4824 3.362831 GTCTTGCTGATTTCATGTTTGCG 59.637 43.478 0.00 0.00 0.00 4.85
3637 6103 4.941713 ACCAGAGAGATCTGTAAGGACTT 58.058 43.478 14.74 0.00 36.06 3.01
3658 6140 7.281100 GGACTTGAATATCACCAAAGAACTAGG 59.719 40.741 0.00 0.00 0.00 3.02
3659 6141 7.690256 ACTTGAATATCACCAAAGAACTAGGT 58.310 34.615 0.00 0.00 35.65 3.08
3722 6204 2.086869 CCATGAGTTGGTTGCGAGATT 58.913 47.619 0.00 0.00 40.99 2.40
4098 6698 3.378112 GCTTGATGCTGCTATGGTGTTTA 59.622 43.478 0.00 0.00 38.95 2.01
4127 6728 7.394016 TGCATAGTTGAACTCTTGAAATCCTA 58.606 34.615 0.00 0.00 0.00 2.94
4131 6732 7.971183 AGTTGAACTCTTGAAATCCTAAGTC 57.029 36.000 0.00 0.00 0.00 3.01
4485 7114 8.380099 TGAAGTTTACTTGACCAATATGGTACT 58.620 33.333 1.24 0.00 43.30 2.73
4789 7419 4.102210 CGGCTCATCCATCTTCCCATATAT 59.898 45.833 0.00 0.00 34.01 0.86
4981 7615 3.058914 GCCGGTGATGATTAAAAGATCGG 60.059 47.826 1.90 0.00 37.15 4.18
5007 7641 7.214467 TCTTTCTTGAAACAAAACAGTCTGT 57.786 32.000 0.00 0.00 0.00 3.41
5092 7728 1.959042 ATGAGCGGAAAGGCAGTATG 58.041 50.000 0.00 0.00 40.87 2.39
5173 7876 5.469760 TGGTAATCGTGGCATTATCTTGATG 59.530 40.000 0.00 0.00 0.00 3.07
5207 7910 4.346709 TCTCACTGATTTTACTGTGGGTGA 59.653 41.667 0.00 0.00 39.84 4.02
5208 7911 4.641396 TCACTGATTTTACTGTGGGTGAG 58.359 43.478 0.00 0.00 39.19 3.51
5209 7912 3.753272 CACTGATTTTACTGTGGGTGAGG 59.247 47.826 0.00 0.00 36.54 3.86
5210 7913 3.244911 ACTGATTTTACTGTGGGTGAGGG 60.245 47.826 0.00 0.00 0.00 4.30
5211 7914 2.092323 GATTTTACTGTGGGTGAGGGC 58.908 52.381 0.00 0.00 0.00 5.19
5212 7915 0.847373 TTTTACTGTGGGTGAGGGCA 59.153 50.000 0.00 0.00 0.00 5.36
5213 7916 0.400213 TTTACTGTGGGTGAGGGCAG 59.600 55.000 0.00 0.00 35.31 4.85
5214 7917 1.488705 TTACTGTGGGTGAGGGCAGG 61.489 60.000 0.00 0.00 33.62 4.85
5215 7918 4.729918 CTGTGGGTGAGGGCAGGC 62.730 72.222 0.00 0.00 0.00 4.85
5232 7935 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
5233 7936 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
5234 7937 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
5235 7938 2.031163 GGCGCAGTGGTGAAGTCT 59.969 61.111 10.83 0.00 0.00 3.24
5236 7939 1.598130 GGCGCAGTGGTGAAGTCTT 60.598 57.895 10.83 0.00 0.00 3.01
5237 7940 1.569479 GGCGCAGTGGTGAAGTCTTC 61.569 60.000 10.83 5.58 0.00 2.87
5238 7941 1.569479 GCGCAGTGGTGAAGTCTTCC 61.569 60.000 10.12 1.81 0.00 3.46
5239 7942 0.951040 CGCAGTGGTGAAGTCTTCCC 60.951 60.000 10.12 10.81 0.00 3.97
5240 7943 0.606673 GCAGTGGTGAAGTCTTCCCC 60.607 60.000 10.12 8.59 0.00 4.81
5241 7944 0.764890 CAGTGGTGAAGTCTTCCCCA 59.235 55.000 12.32 12.32 34.70 4.96
5243 7946 3.257627 TGGTGAAGTCTTCCCCACT 57.742 52.632 12.32 0.00 31.99 4.00
5244 7947 1.518367 TGGTGAAGTCTTCCCCACTT 58.482 50.000 12.32 0.00 31.99 3.16
5245 7948 1.142870 TGGTGAAGTCTTCCCCACTTG 59.857 52.381 12.32 0.00 31.99 3.16
5246 7949 1.143073 GGTGAAGTCTTCCCCACTTGT 59.857 52.381 9.06 0.00 34.10 3.16
5247 7950 2.222027 GTGAAGTCTTCCCCACTTGTG 58.778 52.381 10.12 0.00 34.10 3.33
5248 7951 1.239347 GAAGTCTTCCCCACTTGTGC 58.761 55.000 0.64 0.00 34.10 4.57
5249 7952 0.178990 AAGTCTTCCCCACTTGTGCC 60.179 55.000 0.00 0.00 32.65 5.01
5250 7953 1.150536 GTCTTCCCCACTTGTGCCA 59.849 57.895 0.00 0.00 0.00 4.92
5251 7954 0.467290 GTCTTCCCCACTTGTGCCAA 60.467 55.000 0.00 0.00 0.00 4.52
5252 7955 0.178992 TCTTCCCCACTTGTGCCAAG 60.179 55.000 11.87 11.87 0.00 3.61
5253 7956 0.178992 CTTCCCCACTTGTGCCAAGA 60.179 55.000 18.22 0.00 0.00 3.02
5254 7957 0.178992 TTCCCCACTTGTGCCAAGAG 60.179 55.000 18.22 11.85 0.00 2.85
5255 7958 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
5256 7959 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
5257 7960 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
5258 7961 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
5259 7962 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
5260 7963 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
5261 7964 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
5262 7965 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
5263 7966 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
5264 7967 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
5265 7968 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
5266 7969 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
5267 7970 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
5268 7971 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
5269 7972 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
5280 7983 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
5281 7984 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
5282 7985 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
5283 7986 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
5284 7987 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
5285 7988 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
5286 7989 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
5287 7990 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
5288 7991 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
5289 7992 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
5290 7993 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
5291 7994 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
5292 7995 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
5293 7996 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
5303 8006 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
5304 8007 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
5305 8008 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
5306 8009 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
5307 8010 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
5308 8011 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
5309 8012 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
5310 8013 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
5311 8014 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
5312 8015 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
5313 8016 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
5314 8017 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
5315 8018 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
5316 8019 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
5317 8020 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
5318 8021 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
5319 8022 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
5320 8023 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
5321 8024 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
5322 8025 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
5323 8026 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
5324 8027 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
5325 8028 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
5326 8029 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
5327 8030 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
5328 8031 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
5329 8032 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
5330 8033 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
5331 8034 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
5332 8035 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
5333 8036 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
5334 8037 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
5335 8038 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
5337 8040 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
5338 8041 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
5339 8042 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
5340 8043 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
5341 8044 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
5342 8045 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
5343 8046 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
5350 8053 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
5351 8054 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
5352 8055 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
5353 8056 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
5354 8057 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
5355 8058 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
5356 8059 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
5357 8060 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
5358 8061 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
5359 8062 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
5360 8063 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
5361 8064 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
5362 8065 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
5363 8066 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
5364 8067 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
5365 8068 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
5366 8069 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
5367 8070 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
5368 8071 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
5369 8072 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
5370 8073 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
5371 8074 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
5372 8075 1.656587 ATGCACTGGGTCTGTCCTTA 58.343 50.000 0.00 0.00 36.25 2.69
5373 8076 0.685097 TGCACTGGGTCTGTCCTTAC 59.315 55.000 0.00 0.00 36.25 2.34
5374 8077 0.977395 GCACTGGGTCTGTCCTTACT 59.023 55.000 0.00 0.00 36.25 2.24
5375 8078 1.338200 GCACTGGGTCTGTCCTTACTG 60.338 57.143 0.00 0.00 36.25 2.74
5376 8079 2.248248 CACTGGGTCTGTCCTTACTGA 58.752 52.381 0.00 0.00 36.25 3.41
5377 8080 2.834549 CACTGGGTCTGTCCTTACTGAT 59.165 50.000 0.00 0.00 36.18 2.90
5378 8081 3.261897 CACTGGGTCTGTCCTTACTGATT 59.738 47.826 0.00 0.00 36.18 2.57
5379 8082 3.910627 ACTGGGTCTGTCCTTACTGATTT 59.089 43.478 0.00 0.00 36.18 2.17
5380 8083 4.351111 ACTGGGTCTGTCCTTACTGATTTT 59.649 41.667 0.00 0.00 36.18 1.82
5381 8084 5.546499 ACTGGGTCTGTCCTTACTGATTTTA 59.454 40.000 0.00 0.00 36.18 1.52
5382 8085 5.801380 TGGGTCTGTCCTTACTGATTTTAC 58.199 41.667 0.00 0.00 36.18 2.01
5383 8086 5.546499 TGGGTCTGTCCTTACTGATTTTACT 59.454 40.000 0.00 0.00 36.18 2.24
5384 8087 5.875359 GGGTCTGTCCTTACTGATTTTACTG 59.125 44.000 0.00 0.00 36.18 2.74
5385 8088 6.465084 GGTCTGTCCTTACTGATTTTACTGT 58.535 40.000 0.00 0.00 36.18 3.55
5386 8089 6.369065 GGTCTGTCCTTACTGATTTTACTGTG 59.631 42.308 0.00 0.00 36.18 3.66
5387 8090 6.369065 GTCTGTCCTTACTGATTTTACTGTGG 59.631 42.308 0.00 0.00 36.18 4.17
5388 8091 5.556915 TGTCCTTACTGATTTTACTGTGGG 58.443 41.667 0.00 0.00 0.00 4.61
5389 8092 5.072600 TGTCCTTACTGATTTTACTGTGGGT 59.927 40.000 0.00 0.00 0.00 4.51
5390 8093 5.411669 GTCCTTACTGATTTTACTGTGGGTG 59.588 44.000 0.00 0.00 0.00 4.61
5567 8271 8.548880 AATGTATCAAGCTCCTAGTTAAGGTA 57.451 34.615 0.00 0.00 46.62 3.08
5748 8471 3.197116 CCTTGTACTGGACCCTTTCGTAT 59.803 47.826 0.00 0.00 0.00 3.06
5804 8956 2.503061 CTGGGGAGGACATCTGCG 59.497 66.667 0.00 0.00 34.34 5.18
5870 9025 5.656480 GGTTTATGACAATTTTGGCGGTAT 58.344 37.500 0.00 0.00 39.74 2.73
6277 9735 3.563508 TCAGTTTACGTTGCATGCATTG 58.436 40.909 23.37 18.90 0.00 2.82
6470 9933 6.210287 TGGGTGTCGTTTATCAAAAACTTT 57.790 33.333 0.00 0.00 0.00 2.66
6840 12805 0.817634 TTGCTTGCGCTAACACAGGT 60.818 50.000 9.73 0.00 36.97 4.00
7729 19949 2.935201 GCTCTGATGCTACTGAAGGTTG 59.065 50.000 0.00 0.00 0.00 3.77
7751 19971 2.405618 TAGAGGATATGGCTGGCTGT 57.594 50.000 2.00 0.00 0.00 4.40
7790 20010 7.565450 TTGCAAATTGTTTATGATCGTTCAG 57.435 32.000 0.00 0.00 34.73 3.02
7793 20013 8.293157 TGCAAATTGTTTATGATCGTTCAGTTA 58.707 29.630 2.21 0.00 34.73 2.24
7906 20128 0.176219 TACGGTAAACCCATCTGCCG 59.824 55.000 0.00 0.00 44.10 5.69
7949 20187 0.099436 GACGATGACCTTGCATTGGC 59.901 55.000 6.21 0.00 41.68 4.52
7950 20188 1.063006 CGATGACCTTGCATTGGCG 59.937 57.895 6.21 0.00 45.35 5.69
8033 20304 4.223032 ACACTTGCCTATGCTGTAAGTACT 59.777 41.667 0.00 0.00 38.71 2.73
8069 20340 3.189495 TGTCATGAGACTGTCGAGAACTC 59.811 47.826 0.00 8.72 45.20 3.01
8143 20415 5.106317 CGGAATGCCACTTTGTACTGTTATT 60.106 40.000 0.00 0.00 0.00 1.40
8145 20417 7.201696 CGGAATGCCACTTTGTACTGTTATTAT 60.202 37.037 0.00 0.00 0.00 1.28
8146 20418 8.129211 GGAATGCCACTTTGTACTGTTATTATC 58.871 37.037 0.00 0.00 0.00 1.75
8147 20419 8.574251 AATGCCACTTTGTACTGTTATTATCA 57.426 30.769 0.00 0.00 0.00 2.15
8148 20420 7.987750 TGCCACTTTGTACTGTTATTATCAA 57.012 32.000 0.00 0.00 0.00 2.57
8149 20421 8.574251 TGCCACTTTGTACTGTTATTATCAAT 57.426 30.769 0.00 0.00 0.00 2.57
8150 20422 8.458052 TGCCACTTTGTACTGTTATTATCAATG 58.542 33.333 0.00 0.00 0.00 2.82
8151 20423 7.432252 GCCACTTTGTACTGTTATTATCAATGC 59.568 37.037 0.00 0.00 0.00 3.56
8152 20424 7.915397 CCACTTTGTACTGTTATTATCAATGCC 59.085 37.037 0.00 0.00 0.00 4.40
8153 20425 8.458052 CACTTTGTACTGTTATTATCAATGCCA 58.542 33.333 0.00 0.00 0.00 4.92
8154 20426 9.019656 ACTTTGTACTGTTATTATCAATGCCAA 57.980 29.630 0.00 0.00 0.00 4.52
8155 20427 9.289303 CTTTGTACTGTTATTATCAATGCCAAC 57.711 33.333 0.00 0.00 0.00 3.77
8156 20428 7.010697 TGTACTGTTATTATCAATGCCAACG 57.989 36.000 0.00 0.00 0.00 4.10
8157 20429 4.920376 ACTGTTATTATCAATGCCAACGC 58.080 39.130 0.00 0.00 0.00 4.84
8158 20430 4.202010 ACTGTTATTATCAATGCCAACGCC 60.202 41.667 0.00 0.00 0.00 5.68
8159 20431 3.696548 TGTTATTATCAATGCCAACGCCA 59.303 39.130 0.00 0.00 0.00 5.69
8160 20432 4.340666 TGTTATTATCAATGCCAACGCCAT 59.659 37.500 0.00 0.00 0.00 4.40
8161 20433 3.648339 ATTATCAATGCCAACGCCATC 57.352 42.857 0.00 0.00 0.00 3.51
8236 20527 5.220931 GCCCTTGAGTAGTATTTTGCTGATG 60.221 44.000 0.00 0.00 0.00 3.07
8292 20583 3.557185 CAGCATATACTGTCGTGCAATGT 59.443 43.478 12.42 0.00 39.94 2.71
8361 20653 8.484214 AATAGTATCTGATACTTCTCCTTGCA 57.516 34.615 29.39 12.94 43.27 4.08
8362 20654 6.798427 AGTATCTGATACTTCTCCTTGCAA 57.202 37.500 21.61 0.00 43.27 4.08
8363 20655 7.372260 AGTATCTGATACTTCTCCTTGCAAT 57.628 36.000 21.61 0.00 43.27 3.56
8485 21016 3.823304 GGCTCAGGAGTTTCTTCATTTGT 59.177 43.478 0.00 0.00 0.00 2.83
8491 21022 5.811613 CAGGAGTTTCTTCATTTGTGCAAAA 59.188 36.000 1.26 0.00 33.56 2.44
8603 21191 1.768275 TGGTGGAAGCTCTTCAGTTGA 59.232 47.619 11.27 0.00 41.20 3.18
8631 21230 5.894298 ATCTATCCTATGTCAGGTTTGCA 57.106 39.130 0.00 0.00 45.71 4.08
8640 21239 2.024414 GTCAGGTTTGCAGGTCTTGTT 58.976 47.619 0.00 0.00 0.00 2.83
8717 21318 2.873472 TCGCATTTGTCTTGTTACGGTT 59.127 40.909 0.00 0.00 0.00 4.44
8727 21328 4.909880 GTCTTGTTACGGTTTTGCTGAATC 59.090 41.667 0.00 0.00 0.00 2.52
8728 21329 4.576873 TCTTGTTACGGTTTTGCTGAATCA 59.423 37.500 0.00 0.00 0.00 2.57
8733 21334 0.608130 GGTTTTGCTGAATCACCCCC 59.392 55.000 0.00 0.00 0.00 5.40
8778 21379 6.476380 TGTTTTTACTACTCACGTTGGTACAG 59.524 38.462 0.00 0.00 42.39 2.74
8781 21382 2.954318 ACTACTCACGTTGGTACAGTGT 59.046 45.455 0.00 0.00 42.39 3.55
8782 21383 4.136796 ACTACTCACGTTGGTACAGTGTA 58.863 43.478 0.00 0.00 42.39 2.90
8783 21384 3.360249 ACTCACGTTGGTACAGTGTAC 57.640 47.619 22.81 22.81 42.39 2.90
8853 21455 1.073722 TGGCTGCACAAGAAGAGGG 59.926 57.895 0.50 0.00 0.00 4.30
8867 21469 6.949463 ACAAGAAGAGGGGAGCTAGTATATAC 59.051 42.308 4.60 4.60 0.00 1.47
8869 21471 6.727394 AGAAGAGGGGAGCTAGTATATACAG 58.273 44.000 15.18 10.78 0.00 2.74
8921 21534 4.568152 ATTGGTGTGCAAGTTAACAGTC 57.432 40.909 8.61 0.00 0.00 3.51
8933 21546 6.414987 GCAAGTTAACAGTCTTTACTTTGCAG 59.585 38.462 8.61 0.00 34.12 4.41
8934 21547 6.061231 AGTTAACAGTCTTTACTTTGCAGC 57.939 37.500 8.61 0.00 31.97 5.25
8936 21549 3.214696 ACAGTCTTTACTTTGCAGCCT 57.785 42.857 0.00 0.00 31.97 4.58
8943 21556 0.250295 TACTTTGCAGCCTGTTCGCT 60.250 50.000 0.00 0.00 40.65 4.93
9103 21798 3.628008 AGAAATTGCCATCTGATCTGCA 58.372 40.909 7.16 7.16 0.00 4.41
9107 21825 7.173032 AGAAATTGCCATCTGATCTGCATATA 58.827 34.615 11.01 0.00 33.08 0.86
9131 21849 4.813161 TGAGATACTACAGCAGTACGGTAC 59.187 45.833 10.29 10.29 42.56 3.34
9133 21851 6.166984 AGATACTACAGCAGTACGGTACTA 57.833 41.667 19.69 4.22 42.56 1.82
9143 21861 4.813161 GCAGTACGGTACTACTGTATCTGA 59.187 45.833 24.37 3.91 43.87 3.27
9151 21869 7.122353 ACGGTACTACTGTATCTGACAATTCTT 59.878 37.037 0.00 0.00 35.60 2.52
9152 21870 7.974501 CGGTACTACTGTATCTGACAATTCTTT 59.025 37.037 0.00 0.00 37.70 2.52
9153 21871 9.303537 GGTACTACTGTATCTGACAATTCTTTC 57.696 37.037 0.00 0.00 37.70 2.62
9166 21884 9.868277 CTGACAATTCTTTCTCTATAGAACTGT 57.132 33.333 3.57 0.00 41.78 3.55
9203 21921 3.601443 CAGAGGGCTGTAGTATATGGC 57.399 52.381 0.00 0.00 37.37 4.40
9206 21924 4.019860 CAGAGGGCTGTAGTATATGGCAAT 60.020 45.833 0.00 0.00 37.37 3.56
9208 21926 4.911390 AGGGCTGTAGTATATGGCAATTC 58.089 43.478 0.00 0.00 0.00 2.17
9262 21980 7.824289 TCAATAGATGAAGTGAAGACGGAAAAT 59.176 33.333 0.00 0.00 34.30 1.82
9282 22000 8.445493 GGAAAATAAATCACCAAGCAAATGAAG 58.555 33.333 0.00 0.00 0.00 3.02
9285 22003 8.986477 AATAAATCACCAAGCAAATGAAGTAC 57.014 30.769 0.00 0.00 0.00 2.73
9373 22093 3.050275 GCAGGTCAACTCGGCCAC 61.050 66.667 2.24 0.00 0.00 5.01
9420 22140 2.652530 CCCAACAGTGCATGTGCC 59.347 61.111 2.07 0.00 43.00 5.01
9421 22141 2.201708 CCCAACAGTGCATGTGCCA 61.202 57.895 2.07 0.00 43.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.871557 CGACCCGGATATTTAAACTGTTCA 59.128 41.667 0.73 0.00 0.00 3.18
15 16 4.436332 GACGACCCGGATATTTAAACTGT 58.564 43.478 0.73 0.00 0.00 3.55
19 20 3.705579 TCTGGACGACCCGGATATTTAAA 59.294 43.478 0.73 0.00 45.28 1.52
56 57 5.471556 TTCACAAAGGATGCAATGATGTT 57.528 34.783 0.00 0.00 0.00 2.71
76 77 9.615295 GATTCATAGTAAGAGTTCGTATCCTTC 57.385 37.037 0.00 0.00 0.00 3.46
111 112 6.691388 GCCGACACCAATTTTCTATGTTTATC 59.309 38.462 0.00 0.00 0.00 1.75
112 113 6.377146 AGCCGACACCAATTTTCTATGTTTAT 59.623 34.615 0.00 0.00 0.00 1.40
113 114 5.708230 AGCCGACACCAATTTTCTATGTTTA 59.292 36.000 0.00 0.00 0.00 2.01
114 115 4.522789 AGCCGACACCAATTTTCTATGTTT 59.477 37.500 0.00 0.00 0.00 2.83
115 116 4.079253 AGCCGACACCAATTTTCTATGTT 58.921 39.130 0.00 0.00 0.00 2.71
124 162 1.981256 AAGACAAGCCGACACCAATT 58.019 45.000 0.00 0.00 0.00 2.32
149 187 3.255395 TGTTTTCATGCATGGACGTGAAT 59.745 39.130 25.97 0.00 43.26 2.57
150 188 2.620585 TGTTTTCATGCATGGACGTGAA 59.379 40.909 25.97 10.39 42.37 3.18
220 261 4.693283 TCATCGAGTGTCAAGTTTGTCTT 58.307 39.130 0.00 0.00 36.75 3.01
401 445 5.863397 TCTTTCATCGATGCAACCAAATTTC 59.137 36.000 20.81 0.00 0.00 2.17
443 487 2.925706 TAGCGGTCCCACCTGCAA 60.926 61.111 0.00 0.00 39.22 4.08
510 564 3.368248 CCCATATCCAGCCCAAATATGG 58.632 50.000 11.86 11.86 46.37 2.74
563 617 0.802494 CGAAATTTGGACCCAGACGG 59.198 55.000 0.00 0.00 37.81 4.79
564 618 1.196808 CACGAAATTTGGACCCAGACG 59.803 52.381 7.24 0.00 0.00 4.18
565 619 2.225727 GTCACGAAATTTGGACCCAGAC 59.774 50.000 7.24 3.73 0.00 3.51
566 620 2.500229 GTCACGAAATTTGGACCCAGA 58.500 47.619 7.24 0.00 0.00 3.86
567 621 1.539827 GGTCACGAAATTTGGACCCAG 59.460 52.381 16.84 0.82 43.14 4.45
568 622 1.611519 GGTCACGAAATTTGGACCCA 58.388 50.000 16.84 0.00 43.14 4.51
569 623 0.519961 CGGTCACGAAATTTGGACCC 59.480 55.000 19.74 10.57 45.51 4.46
570 624 0.519961 CCGGTCACGAAATTTGGACC 59.480 55.000 17.36 17.36 44.97 4.46
571 625 0.519961 CCCGGTCACGAAATTTGGAC 59.480 55.000 7.24 6.46 44.60 4.02
572 626 1.238625 GCCCGGTCACGAAATTTGGA 61.239 55.000 7.24 0.00 44.60 3.53
573 627 1.211709 GCCCGGTCACGAAATTTGG 59.788 57.895 0.00 0.00 44.60 3.28
574 628 0.109781 CTGCCCGGTCACGAAATTTG 60.110 55.000 0.00 0.00 44.60 2.32
575 629 0.536460 ACTGCCCGGTCACGAAATTT 60.536 50.000 0.00 0.00 44.60 1.82
576 630 1.072505 ACTGCCCGGTCACGAAATT 59.927 52.632 0.00 0.00 44.60 1.82
577 631 1.671054 CACTGCCCGGTCACGAAAT 60.671 57.895 0.00 0.00 44.60 2.17
578 632 2.280524 CACTGCCCGGTCACGAAA 60.281 61.111 0.00 0.00 44.60 3.46
579 633 3.228017 TCACTGCCCGGTCACGAA 61.228 61.111 0.00 0.00 44.60 3.85
580 634 3.986006 GTCACTGCCCGGTCACGA 61.986 66.667 0.00 0.00 44.60 4.35
606 660 4.697756 TCTCAAACGCCCGGGCAG 62.698 66.667 42.78 34.78 42.06 4.85
616 670 3.146847 ACCCTTCAAATCCGTCTCAAAC 58.853 45.455 0.00 0.00 0.00 2.93
617 671 3.502123 ACCCTTCAAATCCGTCTCAAA 57.498 42.857 0.00 0.00 0.00 2.69
618 672 3.408634 GAACCCTTCAAATCCGTCTCAA 58.591 45.455 0.00 0.00 0.00 3.02
619 673 2.611971 CGAACCCTTCAAATCCGTCTCA 60.612 50.000 0.00 0.00 0.00 3.27
620 674 2.000447 CGAACCCTTCAAATCCGTCTC 59.000 52.381 0.00 0.00 0.00 3.36
621 675 1.338769 CCGAACCCTTCAAATCCGTCT 60.339 52.381 0.00 0.00 0.00 4.18
622 676 1.084289 CCGAACCCTTCAAATCCGTC 58.916 55.000 0.00 0.00 0.00 4.79
623 677 0.399075 ACCGAACCCTTCAAATCCGT 59.601 50.000 0.00 0.00 0.00 4.69
624 678 1.530323 AACCGAACCCTTCAAATCCG 58.470 50.000 0.00 0.00 0.00 4.18
625 679 5.677567 TCTATAACCGAACCCTTCAAATCC 58.322 41.667 0.00 0.00 0.00 3.01
626 680 6.293462 GCATCTATAACCGAACCCTTCAAATC 60.293 42.308 0.00 0.00 0.00 2.17
627 681 5.531287 GCATCTATAACCGAACCCTTCAAAT 59.469 40.000 0.00 0.00 0.00 2.32
628 682 4.879545 GCATCTATAACCGAACCCTTCAAA 59.120 41.667 0.00 0.00 0.00 2.69
629 683 4.163458 AGCATCTATAACCGAACCCTTCAA 59.837 41.667 0.00 0.00 0.00 2.69
630 684 3.709653 AGCATCTATAACCGAACCCTTCA 59.290 43.478 0.00 0.00 0.00 3.02
631 685 4.308265 GAGCATCTATAACCGAACCCTTC 58.692 47.826 0.00 0.00 0.00 3.46
632 686 4.338379 GAGCATCTATAACCGAACCCTT 57.662 45.455 0.00 0.00 0.00 3.95
652 706 9.011095 CCCGAACTCTAATACATCTACATTAGA 57.989 37.037 4.49 4.49 40.01 2.10
653 707 8.244802 CCCCGAACTCTAATACATCTACATTAG 58.755 40.741 0.00 0.00 36.49 1.73
654 708 7.727186 ACCCCGAACTCTAATACATCTACATTA 59.273 37.037 0.00 0.00 0.00 1.90
655 709 6.553852 ACCCCGAACTCTAATACATCTACATT 59.446 38.462 0.00 0.00 0.00 2.71
656 710 6.075984 ACCCCGAACTCTAATACATCTACAT 58.924 40.000 0.00 0.00 0.00 2.29
657 711 5.452255 ACCCCGAACTCTAATACATCTACA 58.548 41.667 0.00 0.00 0.00 2.74
658 712 6.183360 ACAACCCCGAACTCTAATACATCTAC 60.183 42.308 0.00 0.00 0.00 2.59
659 713 5.895534 ACAACCCCGAACTCTAATACATCTA 59.104 40.000 0.00 0.00 0.00 1.98
660 714 4.715297 ACAACCCCGAACTCTAATACATCT 59.285 41.667 0.00 0.00 0.00 2.90
661 715 5.019785 ACAACCCCGAACTCTAATACATC 57.980 43.478 0.00 0.00 0.00 3.06
664 718 7.854557 AATTTACAACCCCGAACTCTAATAC 57.145 36.000 0.00 0.00 0.00 1.89
670 724 5.485620 AGTCTAATTTACAACCCCGAACTC 58.514 41.667 0.00 0.00 0.00 3.01
675 729 4.700700 CCCTAGTCTAATTTACAACCCCG 58.299 47.826 0.00 0.00 0.00 5.73
700 754 3.896888 TGCACATTTCAAATCCCAACTCT 59.103 39.130 0.00 0.00 0.00 3.24
738 792 4.082463 ACATGCAAACCGAACGGAAATATT 60.082 37.500 20.14 0.27 38.96 1.28
739 793 3.442273 ACATGCAAACCGAACGGAAATAT 59.558 39.130 20.14 4.92 38.96 1.28
742 796 1.025812 ACATGCAAACCGAACGGAAA 58.974 45.000 20.14 1.07 38.96 3.13
743 797 1.880271 TACATGCAAACCGAACGGAA 58.120 45.000 20.14 0.74 38.96 4.30
745 799 2.911819 ATTACATGCAAACCGAACGG 57.088 45.000 11.83 11.83 42.03 4.44
747 801 3.817238 ACGAATTACATGCAAACCGAAC 58.183 40.909 9.21 0.00 0.00 3.95
770 833 3.497763 CCACTCCCACTTCATACAAACCA 60.498 47.826 0.00 0.00 0.00 3.67
799 862 3.375299 GTCAGAACAGTGTTGTGCTCTTT 59.625 43.478 24.43 0.00 41.50 2.52
802 865 1.258982 CGTCAGAACAGTGTTGTGCTC 59.741 52.381 24.43 18.39 41.50 4.26
803 866 1.134818 TCGTCAGAACAGTGTTGTGCT 60.135 47.619 24.43 8.83 44.43 4.40
804 867 1.258982 CTCGTCAGAACAGTGTTGTGC 59.741 52.381 24.43 18.49 37.67 4.57
805 868 1.860950 CCTCGTCAGAACAGTGTTGTG 59.139 52.381 23.53 23.53 37.67 3.33
867 947 3.991536 GAGACCAAGCGAGGCGTCC 62.992 68.421 0.00 0.00 0.00 4.79
883 963 1.299773 GAGCGGCGAGGAAGATGAG 60.300 63.158 12.98 0.00 0.00 2.90
1052 1153 1.611419 GGGTTGGGGCTAGGGTTAC 59.389 63.158 0.00 0.00 0.00 2.50
1195 2157 3.878667 GAATCTGGGGCGGGGGAG 61.879 72.222 0.00 0.00 0.00 4.30
1239 2201 0.523335 GCCTCCAAAATGTTAGCGCG 60.523 55.000 0.00 0.00 0.00 6.86
1587 2558 4.038162 GGCCTAACCTACAGAGTACAGATG 59.962 50.000 0.00 0.00 34.51 2.90
1617 2836 5.008415 AGAGAAAGCACAAAACAGTCAGATG 59.992 40.000 0.00 0.00 0.00 2.90
1718 2943 1.470098 CTTATGGTTGCTGGACTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
1738 2963 5.048643 TGACGTAGATAATCTTAGGCTCTGC 60.049 44.000 0.00 0.00 0.00 4.26
1772 2997 4.970662 ACATTGGTGCTTATGACACATC 57.029 40.909 0.00 0.00 39.87 3.06
1848 3079 9.604626 GACTTATTTCATATAAAGCTGCATGAC 57.395 33.333 1.02 0.00 0.00 3.06
2104 3369 8.043710 AGAGAGTATTGGTTAAATGGAACTGAG 58.956 37.037 0.00 0.00 0.00 3.35
2338 3605 7.116061 ACAGACAAACACACAAAAATGAAAC 57.884 32.000 0.00 0.00 0.00 2.78
2742 4013 9.787435 GTATATCAGGAAATACCACCAAACATA 57.213 33.333 0.00 0.00 42.04 2.29
2781 4052 9.772973 TGAAGCGTGTACAGGATTATTATTAAT 57.227 29.630 18.03 0.00 0.00 1.40
2783 4054 8.418662 ACTGAAGCGTGTACAGGATTATTATTA 58.581 33.333 18.03 2.19 36.17 0.98
2913 4318 6.006275 AGCCACTATATCCATGTTGAAGTT 57.994 37.500 0.00 0.00 0.00 2.66
2990 4397 9.209175 GGAATGATAGTGACATGTATTAGGTTC 57.791 37.037 0.00 0.00 0.00 3.62
3032 4439 2.332063 ACCAGATTATTGCCACTCCG 57.668 50.000 0.00 0.00 0.00 4.63
3141 4577 7.114529 CCACGTAGATATGTTTCGATAACTTCC 59.885 40.741 10.41 3.29 0.00 3.46
3175 4611 3.872696 TGCTGTGATGATACCGTCAAAT 58.127 40.909 0.00 0.00 40.97 2.32
3298 4824 4.685628 CACAATACCAAAAGACCAATGCAC 59.314 41.667 0.00 0.00 0.00 4.57
3637 6103 8.210946 CCATACCTAGTTCTTTGGTGATATTCA 58.789 37.037 0.00 0.00 35.59 2.57
3658 6140 1.449601 CACGCACCCCTGTCCATAC 60.450 63.158 0.00 0.00 0.00 2.39
3659 6141 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
3722 6204 3.523564 AGGCTAGAGCTGAAACCCATAAA 59.476 43.478 0.00 0.00 41.70 1.40
4098 6698 4.582869 TCAAGAGTTCAACTATGCAGCAT 58.417 39.130 13.73 13.73 0.00 3.79
4127 6728 5.829924 TGCAGAAGAGAAGAAAAATGGACTT 59.170 36.000 0.00 0.00 0.00 3.01
4131 6732 4.863131 GCATGCAGAAGAGAAGAAAAATGG 59.137 41.667 14.21 0.00 0.00 3.16
4485 7114 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4789 7419 3.475494 ACGGTCACACCCACAGCA 61.475 61.111 0.00 0.00 33.75 4.41
4981 7615 7.970614 ACAGACTGTTTTGTTTCAAGAAAGATC 59.029 33.333 1.07 0.00 0.00 2.75
5007 7641 8.651389 AGCATAAGCCATTCTAGTTTACAGATA 58.349 33.333 0.00 0.00 43.56 1.98
5215 7918 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
5216 7919 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
5217 7920 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
5218 7921 1.569479 GAAGACTTCACCACTGCGCC 61.569 60.000 10.42 0.00 0.00 6.53
5219 7922 1.569479 GGAAGACTTCACCACTGCGC 61.569 60.000 16.85 0.00 0.00 6.09
5220 7923 0.951040 GGGAAGACTTCACCACTGCG 60.951 60.000 16.85 0.00 0.00 5.18
5221 7924 2.934083 GGGAAGACTTCACCACTGC 58.066 57.895 16.85 0.00 0.00 4.40
5227 7930 2.222027 CACAAGTGGGGAAGACTTCAC 58.778 52.381 16.85 13.25 31.05 3.18
5228 7931 1.476833 GCACAAGTGGGGAAGACTTCA 60.477 52.381 16.85 0.00 31.05 3.02
5229 7932 1.239347 GCACAAGTGGGGAAGACTTC 58.761 55.000 6.66 6.66 31.05 3.01
5230 7933 0.178990 GGCACAAGTGGGGAAGACTT 60.179 55.000 2.00 0.00 33.82 3.01
5231 7934 1.352622 TGGCACAAGTGGGGAAGACT 61.353 55.000 2.00 0.00 31.92 3.24
5232 7935 1.150536 TGGCACAAGTGGGGAAGAC 59.849 57.895 2.00 0.00 31.92 3.01
5233 7936 3.667476 TGGCACAAGTGGGGAAGA 58.333 55.556 2.00 0.00 31.92 2.87
5244 7947 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
5245 7948 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
5246 7949 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
5247 7950 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
5248 7951 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
5249 7952 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
5250 7953 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
5251 7954 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
5252 7955 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
5253 7956 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
5262 7965 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
5263 7966 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
5264 7967 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
5265 7968 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
5266 7969 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
5267 7970 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
5268 7971 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
5269 7972 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
5271 7974 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
5272 7975 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
5273 7976 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
5274 7977 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
5285 7988 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
5286 7989 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
5287 7990 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
5288 7991 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
5289 7992 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
5290 7993 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
5291 7994 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
5292 7995 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
5293 7996 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
5294 7997 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
5295 7998 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
5296 7999 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
5297 8000 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
5298 8001 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
5299 8002 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
5300 8003 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
5301 8004 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
5302 8005 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
5303 8006 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
5304 8007 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
5305 8008 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
5306 8009 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
5307 8010 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
5308 8011 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
5309 8012 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
5310 8013 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
5311 8014 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
5312 8015 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
5313 8016 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
5314 8017 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
5315 8018 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
5316 8019 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
5317 8020 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
5318 8021 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
5320 8023 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
5321 8024 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
5322 8025 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
5323 8026 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
5324 8027 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
5325 8028 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
5326 8029 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
5334 8037 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
5335 8038 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
5336 8039 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
5337 8040 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
5338 8041 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
5339 8042 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
5340 8043 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
5341 8044 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
5342 8045 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
5343 8046 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
5344 8047 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
5345 8048 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
5346 8049 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
5347 8050 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
5348 8051 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
5349 8052 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
5350 8053 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
5351 8054 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
5352 8055 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
5353 8056 1.279271 GTAAGGACAGACCCAGTGCAT 59.721 52.381 0.00 0.00 40.05 3.96
5354 8057 0.685097 GTAAGGACAGACCCAGTGCA 59.315 55.000 0.00 0.00 40.05 4.57
5355 8058 0.977395 AGTAAGGACAGACCCAGTGC 59.023 55.000 0.00 0.00 40.05 4.40
5356 8059 2.248248 TCAGTAAGGACAGACCCAGTG 58.752 52.381 0.00 0.00 40.05 3.66
5357 8060 2.696526 TCAGTAAGGACAGACCCAGT 57.303 50.000 0.00 0.00 40.05 4.00
5358 8061 4.559862 AAATCAGTAAGGACAGACCCAG 57.440 45.455 0.00 0.00 40.05 4.45
5359 8062 4.993705 AAAATCAGTAAGGACAGACCCA 57.006 40.909 0.00 0.00 40.05 4.51
5360 8063 5.875359 CAGTAAAATCAGTAAGGACAGACCC 59.125 44.000 0.00 0.00 40.05 4.46
5361 8064 6.369065 CACAGTAAAATCAGTAAGGACAGACC 59.631 42.308 0.00 0.00 39.35 3.85
5362 8065 6.369065 CCACAGTAAAATCAGTAAGGACAGAC 59.631 42.308 0.00 0.00 0.00 3.51
5363 8066 6.464222 CCACAGTAAAATCAGTAAGGACAGA 58.536 40.000 0.00 0.00 0.00 3.41
5364 8067 5.643777 CCCACAGTAAAATCAGTAAGGACAG 59.356 44.000 0.00 0.00 0.00 3.51
5365 8068 5.072600 ACCCACAGTAAAATCAGTAAGGACA 59.927 40.000 0.00 0.00 0.00 4.02
5366 8069 5.411669 CACCCACAGTAAAATCAGTAAGGAC 59.588 44.000 0.00 0.00 0.00 3.85
5367 8070 5.072600 ACACCCACAGTAAAATCAGTAAGGA 59.927 40.000 0.00 0.00 0.00 3.36
5368 8071 5.313712 ACACCCACAGTAAAATCAGTAAGG 58.686 41.667 0.00 0.00 0.00 2.69
5369 8072 7.117812 CAGTACACCCACAGTAAAATCAGTAAG 59.882 40.741 0.00 0.00 0.00 2.34
5370 8073 6.932400 CAGTACACCCACAGTAAAATCAGTAA 59.068 38.462 0.00 0.00 0.00 2.24
5371 8074 6.268158 TCAGTACACCCACAGTAAAATCAGTA 59.732 38.462 0.00 0.00 0.00 2.74
5372 8075 5.071250 TCAGTACACCCACAGTAAAATCAGT 59.929 40.000 0.00 0.00 0.00 3.41
5373 8076 5.547465 TCAGTACACCCACAGTAAAATCAG 58.453 41.667 0.00 0.00 0.00 2.90
5374 8077 5.554437 TCAGTACACCCACAGTAAAATCA 57.446 39.130 0.00 0.00 0.00 2.57
5375 8078 6.653320 TGATTCAGTACACCCACAGTAAAATC 59.347 38.462 0.00 0.00 0.00 2.17
5376 8079 6.539173 TGATTCAGTACACCCACAGTAAAAT 58.461 36.000 0.00 0.00 0.00 1.82
5377 8080 5.931294 TGATTCAGTACACCCACAGTAAAA 58.069 37.500 0.00 0.00 0.00 1.52
5378 8081 5.554437 TGATTCAGTACACCCACAGTAAA 57.446 39.130 0.00 0.00 0.00 2.01
5379 8082 5.554437 TTGATTCAGTACACCCACAGTAA 57.446 39.130 0.00 0.00 0.00 2.24
5380 8083 5.755409 ATTGATTCAGTACACCCACAGTA 57.245 39.130 0.00 0.00 0.00 2.74
5381 8084 4.640771 ATTGATTCAGTACACCCACAGT 57.359 40.909 0.00 0.00 0.00 3.55
5382 8085 5.964958 AAATTGATTCAGTACACCCACAG 57.035 39.130 0.00 0.00 0.00 3.66
5383 8086 6.068010 AGAAAATTGATTCAGTACACCCACA 58.932 36.000 0.00 0.00 0.00 4.17
5384 8087 6.575162 AGAAAATTGATTCAGTACACCCAC 57.425 37.500 0.00 0.00 0.00 4.61
5385 8088 7.432869 CAAAGAAAATTGATTCAGTACACCCA 58.567 34.615 0.00 0.00 31.84 4.51
5386 8089 6.366061 GCAAAGAAAATTGATTCAGTACACCC 59.634 38.462 0.00 0.00 31.84 4.61
5387 8090 7.115378 CAGCAAAGAAAATTGATTCAGTACACC 59.885 37.037 0.00 0.00 31.84 4.16
5388 8091 7.862372 TCAGCAAAGAAAATTGATTCAGTACAC 59.138 33.333 0.00 0.00 31.84 2.90
5389 8092 7.939782 TCAGCAAAGAAAATTGATTCAGTACA 58.060 30.769 0.00 0.00 31.84 2.90
5390 8093 8.801715 TTCAGCAAAGAAAATTGATTCAGTAC 57.198 30.769 0.00 0.00 31.84 2.73
5567 8271 6.656270 TGACAAAGCTCAGATGAATGTACAAT 59.344 34.615 0.00 0.00 0.00 2.71
6470 9933 2.879103 GGAACCTTCCCATGACTCAA 57.121 50.000 0.00 0.00 41.62 3.02
6542 10612 8.167392 TGAACCCTATTCTGAACAAATCCTAAA 58.833 33.333 0.00 0.00 0.00 1.85
7199 13171 4.991056 CGTTCATTATAGTCATCCCTGTGG 59.009 45.833 0.00 0.00 0.00 4.17
7360 19565 4.158394 ACAAAAGCCAGCCTAACATACATG 59.842 41.667 0.00 0.00 0.00 3.21
7729 19949 1.558756 AGCCAGCCATATCCTCTATGC 59.441 52.381 0.00 0.00 0.00 3.14
7793 20013 9.334947 CTCATAGTCCTGATGATAAAACACAAT 57.665 33.333 0.00 0.00 32.96 2.71
7906 20128 4.783764 AAGGCATTAGTGTAACCAAAGC 57.216 40.909 0.00 0.00 37.80 3.51
8033 20304 2.025898 CATGACAAGGGCACATGCATA 58.974 47.619 0.00 0.00 44.36 3.14
8069 20340 6.024664 CGGAGCTATAGTCAATATCTTCACG 58.975 44.000 0.84 0.00 0.00 4.35
8149 20421 1.383456 GGCAATAGATGGCGTTGGCA 61.383 55.000 6.09 0.00 45.46 4.92
8150 20422 1.360192 GGCAATAGATGGCGTTGGC 59.640 57.895 0.00 0.00 45.46 4.52
8157 20429 3.569701 GGTTGGTGTATGGCAATAGATGG 59.430 47.826 0.00 0.00 0.00 3.51
8158 20430 4.464008 AGGTTGGTGTATGGCAATAGATG 58.536 43.478 0.00 0.00 0.00 2.90
8159 20431 4.796110 AGGTTGGTGTATGGCAATAGAT 57.204 40.909 0.00 0.00 0.00 1.98
8160 20432 4.141574 GGTAGGTTGGTGTATGGCAATAGA 60.142 45.833 0.00 0.00 0.00 1.98
8161 20433 4.134563 GGTAGGTTGGTGTATGGCAATAG 58.865 47.826 0.00 0.00 0.00 1.73
8236 20527 5.702865 TGACATGCATGCTTCTTTCTAAAC 58.297 37.500 26.53 3.28 0.00 2.01
8247 20538 7.628580 GCTGATAATGAATATGACATGCATGCT 60.629 37.037 26.53 13.62 37.87 3.79
8292 20583 3.687698 GGCACTTGTAATTCTTTAGGCGA 59.312 43.478 0.00 0.00 0.00 5.54
8363 20655 9.393786 AGGACTTCATAGCTTCCCTAAATATTA 57.606 33.333 0.00 0.00 0.00 0.98
8491 21022 8.611654 TTCGCTTTACTTTCTAATAACCAGTT 57.388 30.769 0.00 0.00 0.00 3.16
8631 21230 3.471680 GAGTGAGCTTCAAACAAGACCT 58.528 45.455 0.00 0.00 0.00 3.85
8640 21239 2.048222 CGGGCGAGTGAGCTTCAA 60.048 61.111 0.00 0.00 37.29 2.69
8733 21334 2.262774 CTAAGCAGAGCCCTGGGTGG 62.263 65.000 15.56 2.72 40.72 4.61
8734 21335 1.222936 CTAAGCAGAGCCCTGGGTG 59.777 63.158 15.56 6.00 40.72 4.61
8735 21336 1.229658 ACTAAGCAGAGCCCTGGGT 60.230 57.895 15.56 0.49 40.72 4.51
8736 21337 1.222936 CACTAAGCAGAGCCCTGGG 59.777 63.158 8.86 8.86 40.72 4.45
8737 21338 0.326264 AACACTAAGCAGAGCCCTGG 59.674 55.000 0.00 0.00 40.72 4.45
8738 21339 2.191128 AAACACTAAGCAGAGCCCTG 57.809 50.000 0.00 0.00 43.22 4.45
8739 21340 2.959465 AAAACACTAAGCAGAGCCCT 57.041 45.000 0.00 0.00 0.00 5.19
8740 21341 4.072839 AGTAAAAACACTAAGCAGAGCCC 58.927 43.478 0.00 0.00 0.00 5.19
8741 21342 5.932883 AGTAGTAAAAACACTAAGCAGAGCC 59.067 40.000 0.00 0.00 32.92 4.70
8742 21343 6.645415 TGAGTAGTAAAAACACTAAGCAGAGC 59.355 38.462 0.00 0.00 32.92 4.09
8743 21344 7.148950 CGTGAGTAGTAAAAACACTAAGCAGAG 60.149 40.741 0.00 0.00 32.92 3.35
8744 21345 6.639686 CGTGAGTAGTAAAAACACTAAGCAGA 59.360 38.462 0.00 0.00 32.92 4.26
8778 21379 2.341257 TCCGTCGTCTCTACAGTACAC 58.659 52.381 0.00 0.00 0.00 2.90
8781 21382 1.827344 TCCTCCGTCGTCTCTACAGTA 59.173 52.381 0.00 0.00 0.00 2.74
8782 21383 0.612229 TCCTCCGTCGTCTCTACAGT 59.388 55.000 0.00 0.00 0.00 3.55
8783 21384 1.134759 TCTCCTCCGTCGTCTCTACAG 60.135 57.143 0.00 0.00 0.00 2.74
8789 21390 1.637724 ATCCCTCTCCTCCGTCGTCT 61.638 60.000 0.00 0.00 0.00 4.18
8897 21510 5.108517 ACTGTTAACTTGCACACCAATTTG 58.891 37.500 7.22 0.00 31.91 2.32
8921 21534 2.918131 GCGAACAGGCTGCAAAGTAAAG 60.918 50.000 15.89 0.00 0.00 1.85
8933 21546 3.933332 ACTATTAAACTCAGCGAACAGGC 59.067 43.478 0.00 0.00 0.00 4.85
8934 21547 6.369065 AGAAACTATTAAACTCAGCGAACAGG 59.631 38.462 0.00 0.00 0.00 4.00
8936 21549 6.347402 GCAGAAACTATTAAACTCAGCGAACA 60.347 38.462 0.00 0.00 0.00 3.18
9103 21798 8.047911 ACCGTACTGCTGTAGTATCTCATATAT 58.952 37.037 8.84 0.00 43.44 0.86
9107 21825 4.462133 ACCGTACTGCTGTAGTATCTCAT 58.538 43.478 8.84 0.00 43.44 2.90
9183 21901 2.899900 TGCCATATACTACAGCCCTCTG 59.100 50.000 0.00 0.00 45.71 3.35
9184 21902 3.260269 TGCCATATACTACAGCCCTCT 57.740 47.619 0.00 0.00 0.00 3.69
9185 21903 4.559862 ATTGCCATATACTACAGCCCTC 57.440 45.455 0.00 0.00 0.00 4.30
9187 21905 4.911390 AGAATTGCCATATACTACAGCCC 58.089 43.478 0.00 0.00 0.00 5.19
9188 21906 6.712547 AGAAAGAATTGCCATATACTACAGCC 59.287 38.462 0.00 0.00 0.00 4.85
9189 21907 7.659390 AGAGAAAGAATTGCCATATACTACAGC 59.341 37.037 0.00 0.00 0.00 4.40
9194 21912 8.884323 TCCATAGAGAAAGAATTGCCATATACT 58.116 33.333 0.00 0.00 0.00 2.12
9197 21915 9.425248 TTTTCCATAGAGAAAGAATTGCCATAT 57.575 29.630 0.00 0.00 37.09 1.78
9198 21916 8.821686 TTTTCCATAGAGAAAGAATTGCCATA 57.178 30.769 0.00 0.00 37.09 2.74
9199 21917 7.632245 GCTTTTCCATAGAGAAAGAATTGCCAT 60.632 37.037 0.00 0.00 37.09 4.40
9200 21918 6.350445 GCTTTTCCATAGAGAAAGAATTGCCA 60.350 38.462 0.00 0.00 37.09 4.92
9201 21919 6.038985 GCTTTTCCATAGAGAAAGAATTGCC 58.961 40.000 0.00 0.00 37.09 4.52
9203 21921 8.919661 GTTTGCTTTTCCATAGAGAAAGAATTG 58.080 33.333 0.00 0.00 37.09 2.32
9206 21924 7.823745 AGTTTGCTTTTCCATAGAGAAAGAA 57.176 32.000 0.00 0.00 37.09 2.52
9208 21926 8.099364 TGTAGTTTGCTTTTCCATAGAGAAAG 57.901 34.615 0.00 0.00 37.09 2.62
9248 21966 6.249035 TGGTGATTTATTTTCCGTCTTCAC 57.751 37.500 0.00 0.00 33.28 3.18
9251 21969 5.242838 TGCTTGGTGATTTATTTTCCGTCTT 59.757 36.000 0.00 0.00 0.00 3.01
9262 21980 6.348950 CCGTACTTCATTTGCTTGGTGATTTA 60.349 38.462 0.00 0.00 0.00 1.40
9282 22000 4.918037 CACTGGAGTGTTATCTACCGTAC 58.082 47.826 0.00 0.00 40.96 3.67
9373 22093 3.068165 TGTGTCCATGCTTATCTAGTCGG 59.932 47.826 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.