Multiple sequence alignment - TraesCS1D01G043800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G043800 chr1D 100.000 3650 0 0 1 3650 22897308 22900957 0.000000e+00 6741.0
1 TraesCS1D01G043800 chr1D 77.400 1354 225 52 1075 2392 22585892 22587200 0.000000e+00 730.0
2 TraesCS1D01G043800 chr1D 76.930 1062 170 46 1073 2117 22540517 22541520 5.360000e-148 534.0
3 TraesCS1D01G043800 chr1D 78.420 848 142 33 1306 2137 22590359 22591181 6.990000e-142 514.0
4 TraesCS1D01G043800 chr1D 78.222 776 143 17 1630 2392 22519286 22520048 1.190000e-129 473.0
5 TraesCS1D01G043800 chr1D 75.335 969 178 42 1136 2074 86092600 86093537 3.390000e-110 409.0
6 TraesCS1D01G043800 chr1D 77.576 660 118 22 1526 2178 22594413 22595049 4.450000e-99 372.0
7 TraesCS1D01G043800 chr1D 90.000 60 6 0 1048 1107 86092470 86092529 1.090000e-10 78.7
8 TraesCS1D01G043800 chr1D 76.374 182 20 12 1097 1275 22590203 22590364 3.910000e-10 76.8
9 TraesCS1D01G043800 chr1D 100.000 28 0 0 3060 3087 22886930 22886903 7.000000e-03 52.8
10 TraesCS1D01G043800 chr1B 87.338 2077 188 35 751 2753 39299139 39301214 0.000000e+00 2309.0
11 TraesCS1D01G043800 chr1B 86.675 773 58 20 2 757 39297255 39297999 0.000000e+00 815.0
12 TraesCS1D01G043800 chr1B 80.000 1110 165 39 1087 2178 38637835 38638905 0.000000e+00 767.0
13 TraesCS1D01G043800 chr1B 76.741 1350 243 45 1073 2392 38612704 38614012 0.000000e+00 688.0
14 TraesCS1D01G043800 chr1B 74.228 1036 213 38 1170 2178 138730855 138731863 5.720000e-103 385.0
15 TraesCS1D01G043800 chr1B 82.301 339 26 15 3188 3501 39301983 39302312 2.800000e-66 263.0
16 TraesCS1D01G043800 chr1B 85.556 90 13 0 2789 2878 39301216 39301305 1.080000e-15 95.3
17 TraesCS1D01G043800 chr1B 85.882 85 9 3 1023 1107 138730677 138730758 1.810000e-13 87.9
18 TraesCS1D01G043800 chr1A 89.673 1559 117 12 880 2406 23978420 23979966 0.000000e+00 1947.0
19 TraesCS1D01G043800 chr1A 90.877 855 42 13 1 828 23977581 23978426 0.000000e+00 1114.0
20 TraesCS1D01G043800 chr1A 76.746 1088 164 47 1128 2178 23440164 23441199 3.230000e-145 525.0
21 TraesCS1D01G043800 chr1A 82.006 339 29 13 3189 3502 24074475 24074806 3.620000e-65 259.0
22 TraesCS1D01G043800 chr1A 93.333 90 5 1 3521 3609 24074793 24074882 8.220000e-27 132.0
23 TraesCS1D01G043800 chr6A 80.669 1195 183 32 1033 2189 146540698 146539514 0.000000e+00 883.0
24 TraesCS1D01G043800 chr7B 80.562 1209 178 27 1023 2189 651173962 651175155 0.000000e+00 878.0
25 TraesCS1D01G043800 chr7B 78.857 1225 182 36 1031 2189 651486703 651485490 0.000000e+00 756.0
26 TraesCS1D01G043800 chr7A 80.926 1101 169 25 1118 2189 675132256 675133344 0.000000e+00 832.0
27 TraesCS1D01G043800 chr7D 79.832 1190 170 38 1033 2189 583599316 583600468 0.000000e+00 804.0
28 TraesCS1D01G043800 chr7D 81.745 619 91 14 1585 2189 583442240 583442850 7.040000e-137 497.0
29 TraesCS1D01G043800 chr7D 80.963 436 57 9 1033 1446 583440066 583440497 4.550000e-84 322.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G043800 chr1D 22897308 22900957 3649 False 6741.000 6741 100.0000 1 3650 1 chr1D.!!$F3 3649
1 TraesCS1D01G043800 chr1D 22540517 22541520 1003 False 534.000 534 76.9300 1073 2117 1 chr1D.!!$F2 1044
2 TraesCS1D01G043800 chr1D 22519286 22520048 762 False 473.000 473 78.2220 1630 2392 1 chr1D.!!$F1 762
3 TraesCS1D01G043800 chr1D 22585892 22595049 9157 False 423.200 730 77.4425 1075 2392 4 chr1D.!!$F4 1317
4 TraesCS1D01G043800 chr1D 86092470 86093537 1067 False 243.850 409 82.6675 1048 2074 2 chr1D.!!$F5 1026
5 TraesCS1D01G043800 chr1B 39297255 39302312 5057 False 870.575 2309 85.4675 2 3501 4 chr1B.!!$F3 3499
6 TraesCS1D01G043800 chr1B 38637835 38638905 1070 False 767.000 767 80.0000 1087 2178 1 chr1B.!!$F2 1091
7 TraesCS1D01G043800 chr1B 38612704 38614012 1308 False 688.000 688 76.7410 1073 2392 1 chr1B.!!$F1 1319
8 TraesCS1D01G043800 chr1B 138730677 138731863 1186 False 236.450 385 80.0550 1023 2178 2 chr1B.!!$F4 1155
9 TraesCS1D01G043800 chr1A 23977581 23979966 2385 False 1530.500 1947 90.2750 1 2406 2 chr1A.!!$F2 2405
10 TraesCS1D01G043800 chr1A 23440164 23441199 1035 False 525.000 525 76.7460 1128 2178 1 chr1A.!!$F1 1050
11 TraesCS1D01G043800 chr6A 146539514 146540698 1184 True 883.000 883 80.6690 1033 2189 1 chr6A.!!$R1 1156
12 TraesCS1D01G043800 chr7B 651173962 651175155 1193 False 878.000 878 80.5620 1023 2189 1 chr7B.!!$F1 1166
13 TraesCS1D01G043800 chr7B 651485490 651486703 1213 True 756.000 756 78.8570 1031 2189 1 chr7B.!!$R1 1158
14 TraesCS1D01G043800 chr7A 675132256 675133344 1088 False 832.000 832 80.9260 1118 2189 1 chr7A.!!$F1 1071
15 TraesCS1D01G043800 chr7D 583599316 583600468 1152 False 804.000 804 79.8320 1033 2189 1 chr7D.!!$F1 1156
16 TraesCS1D01G043800 chr7D 583440066 583442850 2784 False 409.500 497 81.3540 1033 2189 2 chr7D.!!$F2 1156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 2174 1.452025 CGTGACAACTGACGACATGAC 59.548 52.381 0.0 0.0 37.81 3.06 F
2199 13231 0.108329 ACGATGAACTAGGGGTTGCG 60.108 55.000 0.0 0.0 38.41 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2398 13439 0.035820 TTAAACCTTGCGGATCGGCT 60.036 50.0 23.71 7.17 0.0 5.52 R
3424 14894 0.684805 ACGAGGTAGAAGGCAGGAGG 60.685 60.0 0.00 0.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 224 9.783256 CGAAATATTTCTAAAACCCGAGATTTT 57.217 29.630 22.52 0.00 35.07 1.82
327 349 7.667043 TTAGTCTGATTGAGCAACGTTAAAT 57.333 32.000 0.00 0.00 0.00 1.40
360 382 3.503363 TCAGCTGCACATGGTAGAAAAAG 59.497 43.478 9.47 0.00 0.00 2.27
362 384 3.503748 AGCTGCACATGGTAGAAAAAGAC 59.496 43.478 1.02 0.00 0.00 3.01
669 701 6.024552 AGTCATATTGGCACGAAAAATTGT 57.975 33.333 0.00 0.00 0.00 2.71
777 1955 2.812011 CTGAGGTTTTTAGGGAACACCG 59.188 50.000 0.00 0.00 46.96 4.94
862 2044 1.976474 TTGATGCGGTTGGGGAAGC 60.976 57.895 0.00 0.00 0.00 3.86
984 2174 1.452025 CGTGACAACTGACGACATGAC 59.548 52.381 0.00 0.00 37.81 3.06
1279 2569 1.773496 GGCAAGAACGACGAGAACG 59.227 57.895 0.00 0.00 45.75 3.95
1292 2582 1.901650 GAGAACGCAAAGACCGCCAG 61.902 60.000 0.00 0.00 0.00 4.85
1296 2586 2.046314 GCAAAGACCGCCAGGCTA 60.046 61.111 10.54 0.00 42.76 3.93
1297 2587 2.399356 GCAAAGACCGCCAGGCTAC 61.399 63.158 10.54 0.32 42.76 3.58
1474 8333 4.088762 CGCACGTCACCACCATGC 62.089 66.667 0.00 0.00 0.00 4.06
1570 8716 0.317020 GCCGCCGTTCAAGCATAATC 60.317 55.000 0.00 0.00 0.00 1.75
1707 12702 2.515523 ATGCTGATCCTGCACCGC 60.516 61.111 11.82 0.00 40.77 5.68
1803 12799 2.489329 GGACGCCATTTATCATGATGGG 59.511 50.000 18.72 14.22 42.46 4.00
1815 12811 3.378512 TCATGATGGGCAGTTCTACTCT 58.621 45.455 0.00 0.00 0.00 3.24
1890 12898 4.664677 ACGAGCACGGCTGTCACC 62.665 66.667 8.74 0.00 39.88 4.02
1901 12909 0.610232 GCTGTCACCCCAAAGCTGAT 60.610 55.000 0.00 0.00 32.82 2.90
1903 12911 1.542915 CTGTCACCCCAAAGCTGATTG 59.457 52.381 0.00 0.00 0.00 2.67
1906 12923 3.153919 GTCACCCCAAAGCTGATTGTTA 58.846 45.455 0.00 0.00 0.00 2.41
1909 12926 4.038642 TCACCCCAAAGCTGATTGTTAAAC 59.961 41.667 0.00 0.00 0.00 2.01
1919 12945 2.030363 TGATTGTTAAACAAGGCGGCTG 60.030 45.455 14.21 9.65 41.94 4.85
1995 13021 0.753867 TCAAGTACGCCCAAGTGACA 59.246 50.000 0.00 0.00 0.00 3.58
2011 13043 0.819259 GACAAAGGACCTGCACAGCA 60.819 55.000 0.00 0.00 36.92 4.41
2078 13110 1.617947 GGGCAGTGGAAGGAGACGAT 61.618 60.000 0.00 0.00 0.00 3.73
2117 13149 1.227321 TGTTCGTCGGGGTGAACAC 60.227 57.895 3.84 0.00 46.86 3.32
2199 13231 0.108329 ACGATGAACTAGGGGTTGCG 60.108 55.000 0.00 0.00 38.41 4.85
2236 13268 2.124403 ACCTATCGTCGCGGTCCT 60.124 61.111 6.13 0.00 0.00 3.85
2361 13402 2.661537 CGCATATTCTCGGCGCCA 60.662 61.111 28.98 12.94 44.49 5.69
2392 13433 1.021390 CACGCCTTCTGTCCCATGAC 61.021 60.000 0.00 0.00 42.12 3.06
2398 13439 2.507484 CTTCTGTCCCATGACTGCAAA 58.493 47.619 0.00 0.00 42.28 3.68
2406 13447 0.379669 CATGACTGCAAAGCCGATCC 59.620 55.000 0.00 0.00 0.00 3.36
2409 13461 3.126879 CTGCAAAGCCGATCCGCA 61.127 61.111 8.76 0.00 0.00 5.69
2444 13496 9.880157 ATTTTTGAATATGATCAGGGTTCAAAG 57.120 29.630 26.79 0.00 44.57 2.77
2511 13586 4.873746 TCTCTACAGTGTTCTCAAAGGG 57.126 45.455 0.00 0.00 0.00 3.95
2525 13600 2.543067 AAAGGGAGACGCCAGGCATC 62.543 60.000 13.30 5.61 38.95 3.91
2541 13616 3.645268 ATCGGTTGGGCAAGGGAGC 62.645 63.158 0.00 0.00 0.00 4.70
2549 13624 4.235762 GCAAGGGAGCGGCCGATA 62.236 66.667 33.48 0.00 37.63 2.92
2550 13625 2.029666 CAAGGGAGCGGCCGATAG 59.970 66.667 33.48 7.14 37.63 2.08
2573 13649 1.059098 CCTCCCATTCCATCCGATCA 58.941 55.000 0.00 0.00 0.00 2.92
2577 13653 0.250038 CCATTCCATCCGATCACGCT 60.250 55.000 0.00 0.00 38.29 5.07
2579 13655 1.262417 CATTCCATCCGATCACGCTTG 59.738 52.381 0.00 0.00 38.29 4.01
2595 13671 4.505922 CACGCTTGATCTTAGATTCTGGTC 59.494 45.833 0.00 0.00 0.00 4.02
2596 13672 4.404073 ACGCTTGATCTTAGATTCTGGTCT 59.596 41.667 0.00 0.00 0.00 3.85
2599 13675 5.752955 GCTTGATCTTAGATTCTGGTCTGTC 59.247 44.000 0.00 0.00 0.00 3.51
2612 13688 1.069227 GGTCTGTCCAATTGTCGCAAC 60.069 52.381 4.43 0.00 35.97 4.17
2614 13690 0.950836 CTGTCCAATTGTCGCAACCA 59.049 50.000 4.43 0.00 0.00 3.67
2615 13691 0.950836 TGTCCAATTGTCGCAACCAG 59.049 50.000 4.43 0.00 0.00 4.00
2622 13698 0.871722 TTGTCGCAACCAGAAATCCG 59.128 50.000 0.00 0.00 0.00 4.18
2623 13699 1.134694 GTCGCAACCAGAAATCCGC 59.865 57.895 0.00 0.00 0.00 5.54
2624 13700 1.302112 TCGCAACCAGAAATCCGCA 60.302 52.632 0.00 0.00 0.00 5.69
2632 13708 1.135527 CCAGAAATCCGCATGTGCAAT 59.864 47.619 0.00 0.00 42.21 3.56
2634 13710 3.549423 CCAGAAATCCGCATGTGCAATAG 60.549 47.826 0.00 0.00 42.21 1.73
2635 13711 3.313249 CAGAAATCCGCATGTGCAATAGA 59.687 43.478 0.00 0.00 42.21 1.98
2647 13724 7.205297 GCATGTGCAATAGATTTTTCCTACAT 58.795 34.615 0.00 0.00 41.59 2.29
2660 13737 6.942532 TTTTCCTACATATGCAACATCCTC 57.057 37.500 1.58 0.00 0.00 3.71
2661 13738 5.628797 TTCCTACATATGCAACATCCTCA 57.371 39.130 1.58 0.00 0.00 3.86
2666 13743 6.263842 CCTACATATGCAACATCCTCACAATT 59.736 38.462 1.58 0.00 0.00 2.32
2669 13746 7.037438 ACATATGCAACATCCTCACAATTTTC 58.963 34.615 1.58 0.00 0.00 2.29
2674 13754 5.048504 GCAACATCCTCACAATTTTCTCTCA 60.049 40.000 0.00 0.00 0.00 3.27
2683 13763 7.201679 CCTCACAATTTTCTCTCATGGTATGTC 60.202 40.741 0.00 0.00 0.00 3.06
2708 13788 9.729023 TCAAAAAGACATGTAAATATATTGCGG 57.271 29.630 0.00 0.00 0.00 5.69
2726 13806 6.576662 TTGCGGTATTTTTAGGAACATTCA 57.423 33.333 0.00 0.00 0.00 2.57
2761 13841 9.830975 AACTTTTTATGTATGCAAAATATCCCC 57.169 29.630 0.00 0.00 0.00 4.81
2762 13842 8.986991 ACTTTTTATGTATGCAAAATATCCCCA 58.013 29.630 0.00 0.00 0.00 4.96
2766 13846 8.821686 TTATGTATGCAAAATATCCCCATAGG 57.178 34.615 0.00 0.00 0.00 2.57
2767 13847 6.212840 TGTATGCAAAATATCCCCATAGGT 57.787 37.500 0.00 0.00 36.75 3.08
2768 13848 6.245408 TGTATGCAAAATATCCCCATAGGTC 58.755 40.000 0.00 0.00 36.75 3.85
2769 13849 4.805140 TGCAAAATATCCCCATAGGTCA 57.195 40.909 0.00 0.00 36.75 4.02
2770 13850 4.469657 TGCAAAATATCCCCATAGGTCAC 58.530 43.478 0.00 0.00 36.75 3.67
2771 13851 4.079500 TGCAAAATATCCCCATAGGTCACA 60.080 41.667 0.00 0.00 36.75 3.58
2772 13852 4.520492 GCAAAATATCCCCATAGGTCACAG 59.480 45.833 0.00 0.00 36.75 3.66
2773 13853 5.690097 GCAAAATATCCCCATAGGTCACAGA 60.690 44.000 0.00 0.00 36.75 3.41
2774 13854 6.364701 CAAAATATCCCCATAGGTCACAGAA 58.635 40.000 0.00 0.00 36.75 3.02
2775 13855 6.590656 AAATATCCCCATAGGTCACAGAAA 57.409 37.500 0.00 0.00 36.75 2.52
2776 13856 6.590656 AATATCCCCATAGGTCACAGAAAA 57.409 37.500 0.00 0.00 36.75 2.29
2777 13857 4.510167 ATCCCCATAGGTCACAGAAAAG 57.490 45.455 0.00 0.00 36.75 2.27
2778 13858 2.026262 TCCCCATAGGTCACAGAAAAGC 60.026 50.000 0.00 0.00 36.75 3.51
2779 13859 2.369394 CCCATAGGTCACAGAAAAGCC 58.631 52.381 0.00 0.00 0.00 4.35
2780 13860 2.290896 CCCATAGGTCACAGAAAAGCCA 60.291 50.000 0.00 0.00 0.00 4.75
2781 13861 2.749621 CCATAGGTCACAGAAAAGCCAC 59.250 50.000 0.00 0.00 0.00 5.01
2782 13862 2.561478 TAGGTCACAGAAAAGCCACC 57.439 50.000 0.00 0.00 0.00 4.61
2783 13863 0.535102 AGGTCACAGAAAAGCCACCG 60.535 55.000 0.00 0.00 0.00 4.94
2784 13864 0.534203 GGTCACAGAAAAGCCACCGA 60.534 55.000 0.00 0.00 0.00 4.69
2785 13865 0.868406 GTCACAGAAAAGCCACCGAG 59.132 55.000 0.00 0.00 0.00 4.63
2786 13866 0.250295 TCACAGAAAAGCCACCGAGG 60.250 55.000 0.00 0.00 41.84 4.63
2787 13867 1.073199 ACAGAAAAGCCACCGAGGG 59.927 57.895 0.00 0.00 38.09 4.30
2797 13877 1.668419 CCACCGAGGGAAATCATCAC 58.332 55.000 0.00 0.00 0.00 3.06
2800 13880 2.679837 CACCGAGGGAAATCATCACAAG 59.320 50.000 0.00 0.00 32.04 3.16
2806 13886 5.504665 CGAGGGAAATCATCACAAGTTATGC 60.505 44.000 0.00 0.00 32.04 3.14
2808 13888 5.359009 AGGGAAATCATCACAAGTTATGCAG 59.641 40.000 0.00 0.00 32.04 4.41
2817 13897 4.877823 TCACAAGTTATGCAGCATAGGAAG 59.122 41.667 14.81 9.60 0.00 3.46
2821 13901 4.467769 AGTTATGCAGCATAGGAAGCAAT 58.532 39.130 14.81 0.00 40.76 3.56
2822 13902 4.277672 AGTTATGCAGCATAGGAAGCAATG 59.722 41.667 14.81 0.00 40.76 2.82
2825 13905 2.827322 TGCAGCATAGGAAGCAATGTTT 59.173 40.909 0.00 0.00 33.48 2.83
2881 13961 4.914312 CAACATTTGCATCATCACAACC 57.086 40.909 0.00 0.00 0.00 3.77
2882 13962 4.562082 CAACATTTGCATCATCACAACCT 58.438 39.130 0.00 0.00 0.00 3.50
2884 13964 4.813027 ACATTTGCATCATCACAACCTTC 58.187 39.130 0.00 0.00 0.00 3.46
2885 13965 4.281435 ACATTTGCATCATCACAACCTTCA 59.719 37.500 0.00 0.00 0.00 3.02
2887 13967 3.921119 TGCATCATCACAACCTTCAAC 57.079 42.857 0.00 0.00 0.00 3.18
2888 13968 3.220940 TGCATCATCACAACCTTCAACA 58.779 40.909 0.00 0.00 0.00 3.33
2889 13969 3.253921 TGCATCATCACAACCTTCAACAG 59.746 43.478 0.00 0.00 0.00 3.16
2890 13970 3.503363 GCATCATCACAACCTTCAACAGA 59.497 43.478 0.00 0.00 0.00 3.41
2891 13971 4.614535 GCATCATCACAACCTTCAACAGAC 60.615 45.833 0.00 0.00 0.00 3.51
2892 13972 3.476552 TCATCACAACCTTCAACAGACC 58.523 45.455 0.00 0.00 0.00 3.85
2898 14223 5.063204 CACAACCTTCAACAGACCATCTTA 58.937 41.667 0.00 0.00 0.00 2.10
2923 14248 6.927294 AAAATTACTGAAGAGGCTAATCGG 57.073 37.500 6.35 6.35 0.00 4.18
2925 14250 4.920640 TTACTGAAGAGGCTAATCGGAG 57.079 45.455 13.19 1.20 0.00 4.63
2926 14251 3.019799 ACTGAAGAGGCTAATCGGAGA 57.980 47.619 13.19 0.00 45.75 3.71
2928 14253 3.769844 ACTGAAGAGGCTAATCGGAGAAA 59.230 43.478 13.19 0.00 43.58 2.52
2929 14254 4.223032 ACTGAAGAGGCTAATCGGAGAAAA 59.777 41.667 13.19 0.00 43.58 2.29
2933 14307 5.559148 AGAGGCTAATCGGAGAAAATGAT 57.441 39.130 0.00 0.00 43.58 2.45
2986 14361 7.760131 AATTTCATGTTCTAAATTGGCATCG 57.240 32.000 2.89 0.00 34.77 3.84
2991 14366 3.446873 TGTTCTAAATTGGCATCGGCATT 59.553 39.130 0.00 0.00 43.71 3.56
2992 14367 3.713858 TCTAAATTGGCATCGGCATTG 57.286 42.857 0.00 0.00 43.71 2.82
3013 14388 4.297510 TGAAGCCAATGTGAATTGAAACG 58.702 39.130 0.05 0.00 33.55 3.60
3014 14389 4.037327 TGAAGCCAATGTGAATTGAAACGA 59.963 37.500 0.00 0.00 33.55 3.85
3017 14392 4.022068 AGCCAATGTGAATTGAAACGATGT 60.022 37.500 0.00 0.00 33.55 3.06
3019 14394 5.861251 GCCAATGTGAATTGAAACGATGTTA 59.139 36.000 0.00 0.00 33.55 2.41
3021 14396 6.033831 CCAATGTGAATTGAAACGATGTTAGC 59.966 38.462 0.00 0.00 33.55 3.09
3023 14398 4.517075 TGTGAATTGAAACGATGTTAGCCA 59.483 37.500 0.00 0.00 0.00 4.75
3030 14405 6.838198 TGAAACGATGTTAGCCATGTATAC 57.162 37.500 0.00 0.00 32.56 1.47
3031 14406 5.756347 TGAAACGATGTTAGCCATGTATACC 59.244 40.000 0.00 0.00 32.56 2.73
3037 14412 4.834534 TGTTAGCCATGTATACCGTGTTT 58.165 39.130 0.00 0.00 0.00 2.83
3038 14413 4.632251 TGTTAGCCATGTATACCGTGTTTG 59.368 41.667 0.00 0.00 0.00 2.93
3039 14414 3.343941 AGCCATGTATACCGTGTTTGT 57.656 42.857 0.00 0.00 0.00 2.83
3040 14415 3.006940 AGCCATGTATACCGTGTTTGTG 58.993 45.455 0.00 0.00 0.00 3.33
3042 14417 3.189702 GCCATGTATACCGTGTTTGTGTT 59.810 43.478 0.00 0.00 0.00 3.32
3043 14418 4.392445 GCCATGTATACCGTGTTTGTGTTA 59.608 41.667 0.00 0.00 0.00 2.41
3044 14419 5.106634 GCCATGTATACCGTGTTTGTGTTAA 60.107 40.000 0.00 0.00 0.00 2.01
3045 14420 6.568081 GCCATGTATACCGTGTTTGTGTTAAA 60.568 38.462 0.00 0.00 0.00 1.52
3053 14428 5.177142 ACCGTGTTTGTGTTAAAAACCAAAC 59.823 36.000 19.12 19.12 44.13 2.93
3062 14437 7.434492 TGTGTTAAAAACCAAACAACTTCTCA 58.566 30.769 0.00 0.00 37.35 3.27
3063 14438 7.926555 TGTGTTAAAAACCAAACAACTTCTCAA 59.073 29.630 0.00 0.00 37.35 3.02
3065 14440 7.385478 TGTTAAAAACCAAACAACTTCTCAACC 59.615 33.333 0.00 0.00 32.86 3.77
3070 14445 4.339247 ACCAAACAACTTCTCAACCTGATG 59.661 41.667 0.00 0.00 0.00 3.07
3085 14460 4.019174 ACCTGATGTTGCCTTAGGATTTG 58.981 43.478 0.69 0.00 32.86 2.32
3092 14467 5.321102 TGTTGCCTTAGGATTTGTATGTGT 58.679 37.500 0.69 0.00 0.00 3.72
3095 14470 5.321102 TGCCTTAGGATTTGTATGTGTTGT 58.679 37.500 0.69 0.00 0.00 3.32
3110 14493 5.416862 TGTGTTGTATTTGTACACAGCTG 57.583 39.130 13.48 13.48 36.54 4.24
3114 14497 7.227711 TGTGTTGTATTTGTACACAGCTGTTAT 59.772 33.333 18.94 11.29 36.54 1.89
3124 14507 7.990917 TGTACACAGCTGTTATTTTGAAAGAA 58.009 30.769 18.94 0.00 0.00 2.52
3148 14531 4.657436 AAAAGTTTGCGGTTGGTTATCA 57.343 36.364 0.00 0.00 0.00 2.15
3149 14532 3.636282 AAGTTTGCGGTTGGTTATCAC 57.364 42.857 0.00 0.00 0.00 3.06
3150 14533 1.883926 AGTTTGCGGTTGGTTATCACC 59.116 47.619 0.00 0.00 44.56 4.02
3166 14550 2.999331 TCACCATAAGGGCTAGTTTGC 58.001 47.619 0.00 0.00 42.05 3.68
3173 14557 1.971695 GGGCTAGTTTGCGGTTGCT 60.972 57.895 0.00 0.00 43.34 3.91
3174 14558 1.210155 GGCTAGTTTGCGGTTGCTG 59.790 57.895 0.00 0.00 43.34 4.41
3176 14560 1.210155 CTAGTTTGCGGTTGCTGCC 59.790 57.895 0.00 0.00 43.34 4.85
3178 14562 2.690653 TAGTTTGCGGTTGCTGCCCT 62.691 55.000 0.00 0.00 43.34 5.19
3185 14569 2.564721 GGTTGCTGCCCTGTGGAAC 61.565 63.158 0.00 0.00 34.49 3.62
3235 14684 7.823745 AAGAAGTATTTTGTCATCACCAAGT 57.176 32.000 0.00 0.00 0.00 3.16
3236 14685 8.918202 AAGAAGTATTTTGTCATCACCAAGTA 57.082 30.769 0.00 0.00 0.00 2.24
3237 14686 8.553459 AGAAGTATTTTGTCATCACCAAGTAG 57.447 34.615 0.00 0.00 0.00 2.57
3238 14687 6.743575 AGTATTTTGTCATCACCAAGTAGC 57.256 37.500 0.00 0.00 0.00 3.58
3239 14688 4.685169 ATTTTGTCATCACCAAGTAGCG 57.315 40.909 0.00 0.00 0.00 4.26
3240 14689 2.831685 TTGTCATCACCAAGTAGCGT 57.168 45.000 0.00 0.00 0.00 5.07
3256 14705 6.795098 AGTAGCGTTTGTAATGAATTGTCA 57.205 33.333 0.00 0.00 38.41 3.58
3261 14710 6.149308 AGCGTTTGTAATGAATTGTCATCTCA 59.851 34.615 0.00 0.00 44.02 3.27
3319 14785 5.850557 TGTTTCTGCTCTTTGGATTTTCA 57.149 34.783 0.00 0.00 0.00 2.69
3329 14798 6.648879 TCTTTGGATTTTCAAGTAACCTGG 57.351 37.500 0.00 0.00 0.00 4.45
3341 14810 0.331278 TAACCTGGGGAGCATTGGTG 59.669 55.000 0.00 0.00 0.00 4.17
3352 14821 4.518211 GGGAGCATTGGTGATATTCAGAAG 59.482 45.833 0.00 0.00 0.00 2.85
3361 14830 6.962182 TGGTGATATTCAGAAGAAGTCCATT 58.038 36.000 0.00 0.00 37.14 3.16
3362 14831 6.825213 TGGTGATATTCAGAAGAAGTCCATTG 59.175 38.462 0.00 0.00 37.14 2.82
3373 14842 4.536765 AGAAGTCCATTGTGTTGTCCTTT 58.463 39.130 0.00 0.00 0.00 3.11
3375 14844 2.958355 AGTCCATTGTGTTGTCCTTTGG 59.042 45.455 0.00 0.00 0.00 3.28
3384 14854 5.233988 TGTGTTGTCCTTTGGTTTCAAAAG 58.766 37.500 0.00 0.00 41.70 2.27
3385 14855 4.092821 GTGTTGTCCTTTGGTTTCAAAAGC 59.907 41.667 0.00 0.00 41.70 3.51
3390 14860 6.337356 TGTCCTTTGGTTTCAAAAGCTAAAG 58.663 36.000 15.12 15.12 41.70 1.85
3398 14868 6.040054 TGGTTTCAAAAGCTAAAGAACCCTAC 59.960 38.462 13.21 2.87 37.31 3.18
3399 14869 6.264744 GGTTTCAAAAGCTAAAGAACCCTACT 59.735 38.462 7.38 0.00 33.81 2.57
3400 14870 7.446319 GGTTTCAAAAGCTAAAGAACCCTACTA 59.554 37.037 7.38 0.00 33.81 1.82
3405 14875 8.451748 CAAAAGCTAAAGAACCCTACTATGTTC 58.548 37.037 0.00 0.00 40.88 3.18
3420 14890 6.232581 ACTATGTTCTCCTTTGAGATCAGG 57.767 41.667 8.71 0.00 46.75 3.86
3424 14894 3.902881 TCTCCTTTGAGATCAGGAAGC 57.097 47.619 0.00 0.00 42.73 3.86
3441 14911 0.689412 AGCCTCCTGCCTTCTACCTC 60.689 60.000 0.00 0.00 42.71 3.85
3442 14912 2.022240 GCCTCCTGCCTTCTACCTCG 62.022 65.000 0.00 0.00 0.00 4.63
3447 14917 1.002087 CCTGCCTTCTACCTCGTGTTT 59.998 52.381 0.00 0.00 0.00 2.83
3463 14933 5.333513 TCGTGTTTCATTTTGTTGTGTACC 58.666 37.500 0.00 0.00 0.00 3.34
3470 14940 5.724328 TCATTTTGTTGTGTACCTTTGCAA 58.276 33.333 0.00 0.00 0.00 4.08
3482 14952 6.016610 GTGTACCTTTGCAAAAGAGGATTACA 60.017 38.462 20.16 15.55 34.61 2.41
3488 14958 7.874528 CCTTTGCAAAAGAGGATTACAGAAAAT 59.125 33.333 13.84 0.00 32.11 1.82
3489 14959 8.816640 TTTGCAAAAGAGGATTACAGAAAATC 57.183 30.769 10.02 0.00 35.51 2.17
3490 14960 7.523293 TGCAAAAGAGGATTACAGAAAATCA 57.477 32.000 0.00 0.00 37.56 2.57
3491 14961 8.125978 TGCAAAAGAGGATTACAGAAAATCAT 57.874 30.769 0.00 0.00 37.56 2.45
3492 14962 9.241919 TGCAAAAGAGGATTACAGAAAATCATA 57.758 29.630 0.00 0.00 37.56 2.15
3505 14975 8.519492 ACAGAAAATCATAAAATGTTTGACCG 57.481 30.769 0.00 0.00 0.00 4.79
3506 14976 7.598493 ACAGAAAATCATAAAATGTTTGACCGG 59.402 33.333 0.00 0.00 0.00 5.28
3507 14977 7.598493 CAGAAAATCATAAAATGTTTGACCGGT 59.402 33.333 6.92 6.92 0.00 5.28
3508 14978 7.812669 AGAAAATCATAAAATGTTTGACCGGTC 59.187 33.333 28.17 28.17 0.00 4.79
3509 14979 6.582677 AATCATAAAATGTTTGACCGGTCA 57.417 33.333 33.23 33.23 37.91 4.02
3510 14980 6.582677 ATCATAAAATGTTTGACCGGTCAA 57.417 33.333 39.59 39.59 46.72 3.18
3546 15016 8.659925 AAATAAATGTTTGTGTTGATTGCAGA 57.340 26.923 0.00 0.00 0.00 4.26
3547 15017 8.659925 AATAAATGTTTGTGTTGATTGCAGAA 57.340 26.923 0.00 0.00 0.00 3.02
3548 15018 6.981762 AAATGTTTGTGTTGATTGCAGAAA 57.018 29.167 0.00 0.00 0.00 2.52
3549 15019 6.592798 AATGTTTGTGTTGATTGCAGAAAG 57.407 33.333 0.00 0.00 31.32 2.62
3550 15020 5.070770 TGTTTGTGTTGATTGCAGAAAGT 57.929 34.783 0.00 0.00 31.32 2.66
3551 15021 5.477510 TGTTTGTGTTGATTGCAGAAAGTT 58.522 33.333 0.00 0.00 31.32 2.66
3552 15022 6.625362 TGTTTGTGTTGATTGCAGAAAGTTA 58.375 32.000 0.00 0.00 31.32 2.24
3553 15023 6.751425 TGTTTGTGTTGATTGCAGAAAGTTAG 59.249 34.615 0.00 0.00 31.32 2.34
3554 15024 6.691754 TTGTGTTGATTGCAGAAAGTTAGA 57.308 33.333 0.00 0.00 0.00 2.10
3555 15025 6.304356 TGTGTTGATTGCAGAAAGTTAGAG 57.696 37.500 0.00 0.00 0.00 2.43
3556 15026 5.822519 TGTGTTGATTGCAGAAAGTTAGAGT 59.177 36.000 0.00 0.00 0.00 3.24
3557 15027 6.989759 TGTGTTGATTGCAGAAAGTTAGAGTA 59.010 34.615 0.00 0.00 0.00 2.59
3558 15028 7.171508 TGTGTTGATTGCAGAAAGTTAGAGTAG 59.828 37.037 0.00 0.00 0.00 2.57
3559 15029 6.147821 TGTTGATTGCAGAAAGTTAGAGTAGC 59.852 38.462 0.00 0.00 0.00 3.58
3560 15030 6.042638 TGATTGCAGAAAGTTAGAGTAGCT 57.957 37.500 0.00 0.00 0.00 3.32
3561 15031 6.467677 TGATTGCAGAAAGTTAGAGTAGCTT 58.532 36.000 0.00 0.00 0.00 3.74
3562 15032 6.369890 TGATTGCAGAAAGTTAGAGTAGCTTG 59.630 38.462 0.00 0.00 29.33 4.01
3563 15033 5.468540 TGCAGAAAGTTAGAGTAGCTTGA 57.531 39.130 0.00 0.00 29.33 3.02
3564 15034 5.853936 TGCAGAAAGTTAGAGTAGCTTGAA 58.146 37.500 0.00 0.00 29.33 2.69
3565 15035 6.467677 TGCAGAAAGTTAGAGTAGCTTGAAT 58.532 36.000 0.00 0.00 29.33 2.57
3566 15036 6.936900 TGCAGAAAGTTAGAGTAGCTTGAATT 59.063 34.615 0.00 0.00 29.33 2.17
3567 15037 7.095060 TGCAGAAAGTTAGAGTAGCTTGAATTG 60.095 37.037 0.00 0.00 29.33 2.32
3568 15038 7.118390 GCAGAAAGTTAGAGTAGCTTGAATTGA 59.882 37.037 0.00 0.00 29.33 2.57
3569 15039 8.655092 CAGAAAGTTAGAGTAGCTTGAATTGAG 58.345 37.037 0.00 0.00 29.33 3.02
3570 15040 8.589338 AGAAAGTTAGAGTAGCTTGAATTGAGA 58.411 33.333 0.00 0.00 29.33 3.27
3571 15041 8.541133 AAAGTTAGAGTAGCTTGAATTGAGAC 57.459 34.615 0.00 0.00 29.33 3.36
3572 15042 7.233389 AGTTAGAGTAGCTTGAATTGAGACA 57.767 36.000 0.00 0.00 0.00 3.41
3573 15043 7.319646 AGTTAGAGTAGCTTGAATTGAGACAG 58.680 38.462 0.00 0.00 0.00 3.51
3574 15044 5.083533 AGAGTAGCTTGAATTGAGACAGG 57.916 43.478 0.00 0.00 0.00 4.00
3575 15045 4.774726 AGAGTAGCTTGAATTGAGACAGGA 59.225 41.667 0.00 0.00 0.00 3.86
3576 15046 5.424895 AGAGTAGCTTGAATTGAGACAGGAT 59.575 40.000 0.00 0.00 0.00 3.24
3577 15047 6.059787 AGTAGCTTGAATTGAGACAGGATT 57.940 37.500 0.00 0.00 0.00 3.01
3578 15048 6.479884 AGTAGCTTGAATTGAGACAGGATTT 58.520 36.000 0.00 0.00 0.00 2.17
3579 15049 5.893897 AGCTTGAATTGAGACAGGATTTC 57.106 39.130 0.00 0.00 0.00 2.17
3580 15050 4.704057 AGCTTGAATTGAGACAGGATTTCC 59.296 41.667 0.00 0.00 0.00 3.13
3582 15052 5.882557 GCTTGAATTGAGACAGGATTTCCTA 59.117 40.000 0.00 0.00 46.65 2.94
3583 15053 6.545298 GCTTGAATTGAGACAGGATTTCCTAT 59.455 38.462 0.00 0.00 46.65 2.57
3584 15054 7.067981 GCTTGAATTGAGACAGGATTTCCTATT 59.932 37.037 0.00 0.00 46.65 1.73
3585 15055 9.618890 CTTGAATTGAGACAGGATTTCCTATTA 57.381 33.333 0.00 0.00 46.65 0.98
3587 15057 9.784531 TGAATTGAGACAGGATTTCCTATTATC 57.215 33.333 0.00 0.00 46.65 1.75
3591 15061 9.661954 TTGAGACAGGATTTCCTATTATCTAGT 57.338 33.333 0.00 0.00 46.65 2.57
3596 15066 9.845214 ACAGGATTTCCTATTATCTAGTATGGT 57.155 33.333 0.00 0.00 46.65 3.55
3609 15079 9.725206 TTATCTAGTATGGTCTTAAAGGTTCCT 57.275 33.333 0.00 0.00 0.00 3.36
3611 15081 8.530804 TCTAGTATGGTCTTAAAGGTTCCTAC 57.469 38.462 0.00 0.00 0.00 3.18
3612 15082 8.342270 TCTAGTATGGTCTTAAAGGTTCCTACT 58.658 37.037 0.00 0.00 0.00 2.57
3613 15083 7.809880 AGTATGGTCTTAAAGGTTCCTACTT 57.190 36.000 0.00 0.00 0.00 2.24
3614 15084 8.906238 AGTATGGTCTTAAAGGTTCCTACTTA 57.094 34.615 0.00 0.00 0.00 2.24
3615 15085 8.756927 AGTATGGTCTTAAAGGTTCCTACTTAC 58.243 37.037 0.00 0.00 0.00 2.34
3616 15086 7.809880 ATGGTCTTAAAGGTTCCTACTTACT 57.190 36.000 0.00 0.00 0.00 2.24
3617 15087 8.906238 ATGGTCTTAAAGGTTCCTACTTACTA 57.094 34.615 0.00 0.00 0.00 1.82
3618 15088 8.127150 TGGTCTTAAAGGTTCCTACTTACTAC 57.873 38.462 0.00 0.00 0.00 2.73
3619 15089 7.729881 TGGTCTTAAAGGTTCCTACTTACTACA 59.270 37.037 0.00 0.00 0.00 2.74
3620 15090 8.756927 GGTCTTAAAGGTTCCTACTTACTACAT 58.243 37.037 0.00 0.00 0.00 2.29
3627 15097 8.849543 AGGTTCCTACTTACTACATATTTCCA 57.150 34.615 0.00 0.00 0.00 3.53
3628 15098 9.275572 AGGTTCCTACTTACTACATATTTCCAA 57.724 33.333 0.00 0.00 0.00 3.53
3629 15099 9.895138 GGTTCCTACTTACTACATATTTCCAAA 57.105 33.333 0.00 0.00 0.00 3.28
3636 15106 9.780186 ACTTACTACATATTTCCAAATCCTAGC 57.220 33.333 0.00 0.00 0.00 3.42
3639 15109 8.910351 ACTACATATTTCCAAATCCTAGCTTC 57.090 34.615 0.00 0.00 0.00 3.86
3640 15110 8.718656 ACTACATATTTCCAAATCCTAGCTTCT 58.281 33.333 0.00 0.00 0.00 2.85
3642 15112 8.910351 ACATATTTCCAAATCCTAGCTTCTAC 57.090 34.615 0.00 0.00 0.00 2.59
3643 15113 8.718656 ACATATTTCCAAATCCTAGCTTCTACT 58.281 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.095523 TGAGTTCACTACCGTAATTGCTAAAAC 60.096 37.037 0.00 0.00 0.00 2.43
92 93 9.624697 TCTTCAATGGATTTCGATAACAAAAAG 57.375 29.630 0.00 0.00 0.00 2.27
107 108 8.306761 GTTTGGTCACTAAAATCTTCAATGGAT 58.693 33.333 0.00 0.00 0.00 3.41
298 320 5.349817 ACGTTGCTCAATCAGACTAATGAAG 59.650 40.000 0.00 0.00 31.76 3.02
312 334 6.198029 CACATGTTGAATTTAACGTTGCTCAA 59.802 34.615 11.99 10.92 33.28 3.02
327 349 1.334556 GTGCAGCTGACACATGTTGAA 59.665 47.619 26.21 0.00 37.96 2.69
415 439 5.185635 TCCAAAATGCGATCCTCATTTTTCT 59.814 36.000 21.33 7.37 46.15 2.52
429 455 0.798776 AGCTCGAACTCCAAAATGCG 59.201 50.000 0.00 0.00 0.00 4.73
563 595 4.491675 AGAGCTCCCTTGATGTCATATCT 58.508 43.478 10.93 0.00 0.00 1.98
577 609 3.983044 TTTCCTTTGTCTAGAGCTCCC 57.017 47.619 10.93 0.00 0.00 4.30
600 632 7.254084 GCAAAATCAGTGATTCAAAACGTCTTT 60.254 33.333 18.52 2.90 30.29 2.52
669 701 9.778741 AAGATGATCAAGTTTTCTAGTTGTACA 57.221 29.630 0.00 0.00 38.19 2.90
722 754 3.057596 CGAGCTCATCTACTCCTGGATTC 60.058 52.174 15.40 0.00 0.00 2.52
756 1934 2.812011 CGGTGTTCCCTAAAAACCTCAG 59.188 50.000 0.00 0.00 0.00 3.35
777 1955 7.161773 TCATTTCATCTCTGGTTTTTCCATC 57.838 36.000 0.00 0.00 46.12 3.51
849 2030 1.754234 ATCATGCTTCCCCAACCGC 60.754 57.895 0.00 0.00 0.00 5.68
852 2033 1.133025 CGTTCATCATGCTTCCCCAAC 59.867 52.381 0.00 0.00 0.00 3.77
862 2044 1.134818 TCTTCCCGTCCGTTCATCATG 60.135 52.381 0.00 0.00 0.00 3.07
932 2120 7.756614 TGTAGCTATTATCTTCTCTACCTCCA 58.243 38.462 0.00 0.00 0.00 3.86
933 2121 7.886446 ACTGTAGCTATTATCTTCTCTACCTCC 59.114 40.741 0.00 0.00 0.00 4.30
935 2123 7.604927 CGACTGTAGCTATTATCTTCTCTACCT 59.395 40.741 0.00 0.00 0.00 3.08
936 2124 7.148373 CCGACTGTAGCTATTATCTTCTCTACC 60.148 44.444 0.00 0.00 0.00 3.18
937 2125 7.603404 TCCGACTGTAGCTATTATCTTCTCTAC 59.397 40.741 0.00 0.00 0.00 2.59
950 2140 1.081892 GTCACGTCCGACTGTAGCTA 58.918 55.000 0.00 0.00 32.92 3.32
1002 2192 3.007074 TCGATCTATAGAGAGAGGTGCGT 59.993 47.826 8.70 0.00 34.35 5.24
1035 2228 0.948623 TGCCCATTGACACGTTCTCG 60.949 55.000 0.00 0.00 43.34 4.04
1039 2232 1.238439 CTTCTGCCCATTGACACGTT 58.762 50.000 0.00 0.00 0.00 3.99
1279 2569 2.046314 TAGCCTGGCGGTCTTTGC 60.046 61.111 13.96 0.00 0.00 3.68
1803 12799 6.017440 CAGTATAGGAGACAGAGTAGAACTGC 60.017 46.154 0.00 0.00 38.74 4.40
1815 12811 3.014623 CACGACACCAGTATAGGAGACA 58.985 50.000 0.00 0.00 0.00 3.41
1890 12898 4.990426 CCTTGTTTAACAATCAGCTTTGGG 59.010 41.667 11.12 2.17 37.48 4.12
1901 12909 0.671251 CCAGCCGCCTTGTTTAACAA 59.329 50.000 10.26 10.26 36.54 2.83
1903 12911 1.080772 GCCAGCCGCCTTGTTTAAC 60.081 57.895 0.00 0.00 0.00 2.01
2078 13110 4.470170 CGACGTCGCCGATGTCCA 62.470 66.667 28.21 0.00 43.36 4.02
2097 13129 0.107800 TGTTCACCCCGACGAACAAA 60.108 50.000 0.00 0.00 46.29 2.83
2150 13182 4.881440 TGCAGCCGGCCATGATCC 62.881 66.667 26.15 3.75 43.89 3.36
2156 13188 2.593468 GAAGTAGATGCAGCCGGCCA 62.593 60.000 26.15 16.30 43.89 5.36
2210 13242 0.384669 CGACGATAGGTCCTTGGTCC 59.615 60.000 0.00 0.00 42.99 4.46
2236 13268 3.126858 GGCTCATCATCGCAACTTTTGTA 59.873 43.478 0.00 0.00 0.00 2.41
2309 13341 0.250234 CGCCTCCATCTTCTTCACCA 59.750 55.000 0.00 0.00 0.00 4.17
2361 13402 4.388499 GGCGTGATCCACACCGGT 62.388 66.667 0.00 0.00 45.73 5.28
2392 13433 2.588146 CTTGCGGATCGGCTTTGCAG 62.588 60.000 23.71 9.74 36.83 4.41
2398 13439 0.035820 TTAAACCTTGCGGATCGGCT 60.036 50.000 23.71 7.17 0.00 5.52
2484 13559 7.442364 CCTTTGAGAACACTGTAGAGAAATTGA 59.558 37.037 0.00 0.00 0.00 2.57
2488 13563 5.365605 TCCCTTTGAGAACACTGTAGAGAAA 59.634 40.000 0.00 0.00 0.00 2.52
2504 13579 3.068881 CCTGGCGTCTCCCTTTGA 58.931 61.111 0.00 0.00 0.00 2.69
2511 13586 3.665675 AACCGATGCCTGGCGTCTC 62.666 63.158 31.83 19.10 41.85 3.36
2518 13593 2.676121 TTGCCCAACCGATGCCTG 60.676 61.111 0.00 0.00 0.00 4.85
2543 13618 1.484444 AATGGGAGGCTCCTATCGGC 61.484 60.000 29.78 14.70 36.66 5.54
2544 13619 0.610687 GAATGGGAGGCTCCTATCGG 59.389 60.000 29.78 0.00 36.66 4.18
2545 13620 0.610687 GGAATGGGAGGCTCCTATCG 59.389 60.000 29.78 0.00 36.66 2.92
2546 13621 1.734655 TGGAATGGGAGGCTCCTATC 58.265 55.000 29.78 23.66 36.66 2.08
2549 13624 1.064824 GGATGGAATGGGAGGCTCCT 61.065 60.000 31.39 13.72 36.57 3.69
2550 13625 1.458045 GGATGGAATGGGAGGCTCC 59.542 63.158 25.80 25.80 35.23 4.70
2551 13626 1.072159 CGGATGGAATGGGAGGCTC 59.928 63.158 5.78 5.78 0.00 4.70
2552 13627 0.769776 ATCGGATGGAATGGGAGGCT 60.770 55.000 0.00 0.00 0.00 4.58
2561 13637 0.534873 TCAAGCGTGATCGGATGGAA 59.465 50.000 0.00 0.00 37.56 3.53
2573 13649 4.404073 AGACCAGAATCTAAGATCAAGCGT 59.596 41.667 0.00 0.00 0.00 5.07
2577 13653 5.721480 TGGACAGACCAGAATCTAAGATCAA 59.279 40.000 0.00 0.00 44.64 2.57
2579 13655 5.860941 TGGACAGACCAGAATCTAAGATC 57.139 43.478 0.00 0.00 44.64 2.75
2595 13671 0.950836 TGGTTGCGACAATTGGACAG 59.049 50.000 10.83 0.00 0.00 3.51
2596 13672 0.950836 CTGGTTGCGACAATTGGACA 59.049 50.000 10.83 1.75 0.00 4.02
2599 13675 2.791383 TTTCTGGTTGCGACAATTGG 57.209 45.000 10.83 0.00 0.00 3.16
2612 13688 0.527113 TTGCACATGCGGATTTCTGG 59.473 50.000 0.00 0.00 45.83 3.86
2614 13690 3.544684 TCTATTGCACATGCGGATTTCT 58.455 40.909 0.00 0.00 45.83 2.52
2615 13691 3.969117 TCTATTGCACATGCGGATTTC 57.031 42.857 0.00 0.00 45.83 2.17
2622 13698 6.563422 TGTAGGAAAAATCTATTGCACATGC 58.437 36.000 0.00 0.00 42.50 4.06
2632 13708 9.066892 GGATGTTGCATATGTAGGAAAAATCTA 57.933 33.333 4.29 0.00 0.00 1.98
2634 13710 7.945134 AGGATGTTGCATATGTAGGAAAAATC 58.055 34.615 4.29 2.67 0.00 2.17
2635 13711 7.560991 TGAGGATGTTGCATATGTAGGAAAAAT 59.439 33.333 4.29 0.00 0.00 1.82
2647 13724 6.660521 AGAGAAAATTGTGAGGATGTTGCATA 59.339 34.615 0.00 0.00 0.00 3.14
2656 13733 5.246981 ACCATGAGAGAAAATTGTGAGGA 57.753 39.130 0.00 0.00 0.00 3.71
2660 13737 7.381766 TGACATACCATGAGAGAAAATTGTG 57.618 36.000 0.00 0.00 0.00 3.33
2661 13738 8.408043 TTTGACATACCATGAGAGAAAATTGT 57.592 30.769 0.00 0.00 0.00 2.71
2666 13743 8.099364 GTCTTTTTGACATACCATGAGAGAAA 57.901 34.615 0.00 0.00 44.73 2.52
2683 13763 9.515020 ACCGCAATATATTTACATGTCTTTTTG 57.485 29.630 0.00 0.30 0.00 2.44
2743 13823 6.804083 ACCTATGGGGATATTTTGCATACAT 58.196 36.000 0.00 0.00 38.76 2.29
2744 13824 6.183361 TGACCTATGGGGATATTTTGCATACA 60.183 38.462 0.00 0.00 38.76 2.29
2745 13825 6.151144 GTGACCTATGGGGATATTTTGCATAC 59.849 42.308 0.00 0.00 38.76 2.39
2746 13826 6.183361 TGTGACCTATGGGGATATTTTGCATA 60.183 38.462 0.00 0.00 38.76 3.14
2747 13827 5.079643 GTGACCTATGGGGATATTTTGCAT 58.920 41.667 0.00 0.00 38.76 3.96
2748 13828 4.079500 TGTGACCTATGGGGATATTTTGCA 60.080 41.667 0.00 0.00 38.76 4.08
2749 13829 4.469657 TGTGACCTATGGGGATATTTTGC 58.530 43.478 0.00 0.00 38.76 3.68
2750 13830 5.940617 TCTGTGACCTATGGGGATATTTTG 58.059 41.667 0.00 0.00 38.76 2.44
2751 13831 6.590656 TTCTGTGACCTATGGGGATATTTT 57.409 37.500 0.00 0.00 38.76 1.82
2754 13834 5.456763 GCTTTTCTGTGACCTATGGGGATAT 60.457 44.000 0.00 0.00 38.76 1.63
2755 13835 4.141482 GCTTTTCTGTGACCTATGGGGATA 60.141 45.833 0.00 0.00 38.76 2.59
2756 13836 3.372025 GCTTTTCTGTGACCTATGGGGAT 60.372 47.826 0.00 0.00 38.76 3.85
2757 13837 2.026262 GCTTTTCTGTGACCTATGGGGA 60.026 50.000 0.00 0.00 38.76 4.81
2758 13838 2.369394 GCTTTTCTGTGACCTATGGGG 58.631 52.381 0.00 0.00 41.89 4.96
2759 13839 2.290896 TGGCTTTTCTGTGACCTATGGG 60.291 50.000 0.00 0.00 38.88 4.00
2760 13840 2.749621 GTGGCTTTTCTGTGACCTATGG 59.250 50.000 0.00 0.00 0.00 2.74
2761 13841 2.749621 GGTGGCTTTTCTGTGACCTATG 59.250 50.000 0.00 0.00 0.00 2.23
2762 13842 2.615493 CGGTGGCTTTTCTGTGACCTAT 60.615 50.000 0.00 0.00 0.00 2.57
2763 13843 1.270625 CGGTGGCTTTTCTGTGACCTA 60.271 52.381 0.00 0.00 0.00 3.08
2764 13844 0.535102 CGGTGGCTTTTCTGTGACCT 60.535 55.000 0.00 0.00 0.00 3.85
2765 13845 0.534203 TCGGTGGCTTTTCTGTGACC 60.534 55.000 0.00 0.00 0.00 4.02
2766 13846 0.868406 CTCGGTGGCTTTTCTGTGAC 59.132 55.000 0.00 0.00 0.00 3.67
2767 13847 0.250295 CCTCGGTGGCTTTTCTGTGA 60.250 55.000 0.00 0.00 0.00 3.58
2768 13848 1.237285 CCCTCGGTGGCTTTTCTGTG 61.237 60.000 0.00 0.00 0.00 3.66
2769 13849 1.073199 CCCTCGGTGGCTTTTCTGT 59.927 57.895 0.00 0.00 0.00 3.41
2770 13850 0.250727 TTCCCTCGGTGGCTTTTCTG 60.251 55.000 0.00 0.00 0.00 3.02
2771 13851 0.476771 TTTCCCTCGGTGGCTTTTCT 59.523 50.000 0.00 0.00 0.00 2.52
2772 13852 1.472878 GATTTCCCTCGGTGGCTTTTC 59.527 52.381 0.00 0.00 0.00 2.29
2773 13853 1.203001 TGATTTCCCTCGGTGGCTTTT 60.203 47.619 0.00 0.00 0.00 2.27
2774 13854 0.404040 TGATTTCCCTCGGTGGCTTT 59.596 50.000 0.00 0.00 0.00 3.51
2775 13855 0.625849 ATGATTTCCCTCGGTGGCTT 59.374 50.000 0.00 0.00 0.00 4.35
2776 13856 0.181350 GATGATTTCCCTCGGTGGCT 59.819 55.000 0.00 0.00 0.00 4.75
2777 13857 0.107214 TGATGATTTCCCTCGGTGGC 60.107 55.000 0.00 0.00 0.00 5.01
2778 13858 1.065491 TGTGATGATTTCCCTCGGTGG 60.065 52.381 0.00 0.00 0.00 4.61
2779 13859 2.401583 TGTGATGATTTCCCTCGGTG 57.598 50.000 0.00 0.00 0.00 4.94
2780 13860 2.305927 ACTTGTGATGATTTCCCTCGGT 59.694 45.455 0.00 0.00 0.00 4.69
2781 13861 2.991250 ACTTGTGATGATTTCCCTCGG 58.009 47.619 0.00 0.00 0.00 4.63
2782 13862 5.504665 GCATAACTTGTGATGATTTCCCTCG 60.505 44.000 2.43 0.00 0.00 4.63
2783 13863 5.357878 TGCATAACTTGTGATGATTTCCCTC 59.642 40.000 2.43 0.00 0.00 4.30
2784 13864 5.263599 TGCATAACTTGTGATGATTTCCCT 58.736 37.500 2.43 0.00 0.00 4.20
2785 13865 5.581126 TGCATAACTTGTGATGATTTCCC 57.419 39.130 2.43 0.00 0.00 3.97
2786 13866 5.039333 GCTGCATAACTTGTGATGATTTCC 58.961 41.667 2.43 0.00 0.00 3.13
2787 13867 5.643664 TGCTGCATAACTTGTGATGATTTC 58.356 37.500 0.00 0.00 0.00 2.17
2797 13877 3.628942 TGCTTCCTATGCTGCATAACTTG 59.371 43.478 21.56 10.91 0.00 3.16
2800 13880 4.037208 ACATTGCTTCCTATGCTGCATAAC 59.963 41.667 21.56 10.41 35.27 1.89
2825 13905 6.310467 TGCAAAGTTATTTTTACGTTGTTGCA 59.690 30.769 0.00 0.00 43.68 4.08
2833 13913 6.926280 TCATGCTGCAAAGTTATTTTTACG 57.074 33.333 6.36 0.00 0.00 3.18
2878 13958 7.654022 TTTTTAAGATGGTCTGTTGAAGGTT 57.346 32.000 0.00 0.00 0.00 3.50
2903 14228 5.141182 TCTCCGATTAGCCTCTTCAGTAAT 58.859 41.667 0.00 0.00 0.00 1.89
2911 14236 5.559148 ATCATTTTCTCCGATTAGCCTCT 57.441 39.130 0.00 0.00 0.00 3.69
2912 14237 7.730364 TTAATCATTTTCTCCGATTAGCCTC 57.270 36.000 0.00 0.00 34.16 4.70
2915 14240 9.788960 ACTTTTTAATCATTTTCTCCGATTAGC 57.211 29.630 0.00 0.00 34.16 3.09
2966 14341 3.066621 GCCGATGCCAATTTAGAACATGA 59.933 43.478 0.00 0.00 0.00 3.07
2973 14348 3.713858 TCAATGCCGATGCCAATTTAG 57.286 42.857 0.00 0.00 36.33 1.85
2991 14366 4.037327 TCGTTTCAATTCACATTGGCTTCA 59.963 37.500 0.00 0.00 40.41 3.02
2992 14367 4.545610 TCGTTTCAATTCACATTGGCTTC 58.454 39.130 0.00 0.00 40.41 3.86
2999 14374 5.182950 TGGCTAACATCGTTTCAATTCACAT 59.817 36.000 0.00 0.00 0.00 3.21
3013 14388 4.628074 ACACGGTATACATGGCTAACATC 58.372 43.478 5.01 0.00 37.84 3.06
3014 14389 4.682778 ACACGGTATACATGGCTAACAT 57.317 40.909 5.01 0.00 41.57 2.71
3017 14392 4.632251 CACAAACACGGTATACATGGCTAA 59.368 41.667 5.01 0.00 0.00 3.09
3019 14394 3.006940 CACAAACACGGTATACATGGCT 58.993 45.455 5.01 0.00 0.00 4.75
3021 14396 6.483385 TTAACACAAACACGGTATACATGG 57.517 37.500 5.01 0.00 0.00 3.66
3023 14398 7.861872 GGTTTTTAACACAAACACGGTATACAT 59.138 33.333 5.01 0.00 36.07 2.29
3030 14405 5.176958 TGTTTGGTTTTTAACACAAACACGG 59.823 36.000 21.61 0.00 45.94 4.94
3031 14406 6.211664 TGTTTGGTTTTTAACACAAACACG 57.788 33.333 21.61 0.00 45.94 4.49
3037 14412 7.434492 TGAGAAGTTGTTTGGTTTTTAACACA 58.566 30.769 0.00 0.00 34.25 3.72
3038 14413 7.876896 TGAGAAGTTGTTTGGTTTTTAACAC 57.123 32.000 0.00 0.00 34.25 3.32
3039 14414 7.385478 GGTTGAGAAGTTGTTTGGTTTTTAACA 59.615 33.333 0.00 0.00 32.76 2.41
3040 14415 7.601130 AGGTTGAGAAGTTGTTTGGTTTTTAAC 59.399 33.333 0.00 0.00 0.00 2.01
3042 14417 7.039644 TCAGGTTGAGAAGTTGTTTGGTTTTTA 60.040 33.333 0.00 0.00 0.00 1.52
3043 14418 5.931724 CAGGTTGAGAAGTTGTTTGGTTTTT 59.068 36.000 0.00 0.00 0.00 1.94
3044 14419 5.245075 TCAGGTTGAGAAGTTGTTTGGTTTT 59.755 36.000 0.00 0.00 0.00 2.43
3045 14420 4.770010 TCAGGTTGAGAAGTTGTTTGGTTT 59.230 37.500 0.00 0.00 0.00 3.27
3062 14437 4.322057 AATCCTAAGGCAACATCAGGTT 57.678 40.909 0.00 0.00 41.47 3.50
3063 14438 4.019174 CAAATCCTAAGGCAACATCAGGT 58.981 43.478 0.00 0.00 41.41 4.00
3065 14440 6.319658 ACATACAAATCCTAAGGCAACATCAG 59.680 38.462 0.00 0.00 41.41 2.90
3070 14445 5.897377 ACACATACAAATCCTAAGGCAAC 57.103 39.130 0.00 0.00 0.00 4.17
3092 14467 9.457110 CAAAATAACAGCTGTGTACAAATACAA 57.543 29.630 22.49 0.00 42.99 2.41
3101 14484 9.862371 TTTTTCTTTCAAAATAACAGCTGTGTA 57.138 25.926 22.49 14.82 35.08 2.90
3130 14513 1.883926 GGTGATAACCAACCGCAAACT 59.116 47.619 0.00 0.00 0.00 2.66
3131 14514 1.609555 TGGTGATAACCAACCGCAAAC 59.390 47.619 0.00 0.00 36.74 2.93
3132 14515 1.982660 TGGTGATAACCAACCGCAAA 58.017 45.000 0.00 0.00 36.74 3.68
3133 14516 2.208132 ATGGTGATAACCAACCGCAA 57.792 45.000 5.87 0.00 43.83 4.85
3134 14517 3.275143 CTTATGGTGATAACCAACCGCA 58.725 45.455 5.87 0.00 43.83 5.69
3136 14519 3.211045 CCCTTATGGTGATAACCAACCG 58.789 50.000 5.87 0.00 43.83 4.44
3137 14520 2.956333 GCCCTTATGGTGATAACCAACC 59.044 50.000 5.87 0.00 43.83 3.77
3138 14521 3.898482 AGCCCTTATGGTGATAACCAAC 58.102 45.455 5.87 0.00 43.83 3.77
3140 14523 4.303794 ACTAGCCCTTATGGTGATAACCA 58.696 43.478 3.76 3.76 44.85 3.67
3143 14526 5.130350 GCAAACTAGCCCTTATGGTGATAA 58.870 41.667 0.00 0.00 36.04 1.75
3145 14528 3.555966 GCAAACTAGCCCTTATGGTGAT 58.444 45.455 0.00 0.00 36.04 3.06
3147 14530 1.670811 CGCAAACTAGCCCTTATGGTG 59.329 52.381 0.00 0.00 36.04 4.17
3148 14531 1.408266 CCGCAAACTAGCCCTTATGGT 60.408 52.381 0.00 0.00 36.04 3.55
3149 14532 1.308998 CCGCAAACTAGCCCTTATGG 58.691 55.000 0.00 0.00 37.09 2.74
3150 14533 2.038387 ACCGCAAACTAGCCCTTATG 57.962 50.000 0.00 0.00 0.00 1.90
3151 14534 2.365582 CAACCGCAAACTAGCCCTTAT 58.634 47.619 0.00 0.00 0.00 1.73
3154 14538 1.971695 GCAACCGCAAACTAGCCCT 60.972 57.895 0.00 0.00 38.36 5.19
3166 14550 4.641645 TCCACAGGGCAGCAACCG 62.642 66.667 0.00 0.00 0.00 4.44
3173 14557 1.626825 GTAGTTAGGTTCCACAGGGCA 59.373 52.381 0.00 0.00 0.00 5.36
3174 14558 1.626825 TGTAGTTAGGTTCCACAGGGC 59.373 52.381 0.00 0.00 0.00 5.19
3176 14560 3.517901 TGGATGTAGTTAGGTTCCACAGG 59.482 47.826 0.00 0.00 31.67 4.00
3178 14562 5.570205 TTTGGATGTAGTTAGGTTCCACA 57.430 39.130 0.00 0.00 36.25 4.17
3220 14669 3.120321 ACGCTACTTGGTGATGACAAA 57.880 42.857 0.00 0.00 0.00 2.83
3224 14673 3.120321 ACAAACGCTACTTGGTGATGA 57.880 42.857 0.00 0.00 0.00 2.92
3229 14678 6.016610 ACAATTCATTACAAACGCTACTTGGT 60.017 34.615 0.00 0.00 0.00 3.67
3230 14679 6.378582 ACAATTCATTACAAACGCTACTTGG 58.621 36.000 0.00 0.00 0.00 3.61
3231 14680 7.075121 TGACAATTCATTACAAACGCTACTTG 58.925 34.615 0.00 0.00 0.00 3.16
3232 14681 7.197071 TGACAATTCATTACAAACGCTACTT 57.803 32.000 0.00 0.00 0.00 2.24
3233 14682 6.795098 TGACAATTCATTACAAACGCTACT 57.205 33.333 0.00 0.00 0.00 2.57
3234 14683 7.464358 AGATGACAATTCATTACAAACGCTAC 58.536 34.615 0.00 0.00 42.95 3.58
3235 14684 7.333174 TGAGATGACAATTCATTACAAACGCTA 59.667 33.333 0.00 0.00 42.95 4.26
3236 14685 6.149308 TGAGATGACAATTCATTACAAACGCT 59.851 34.615 0.00 0.00 42.95 5.07
3237 14686 6.314018 TGAGATGACAATTCATTACAAACGC 58.686 36.000 0.00 0.00 42.95 4.84
3238 14687 7.964559 ACATGAGATGACAATTCATTACAAACG 59.035 33.333 0.00 0.00 42.95 3.60
3256 14705 9.314321 CAACCTAAAGAATACGTTACATGAGAT 57.686 33.333 0.00 0.00 0.00 2.75
3261 14710 6.673154 GGCAACCTAAAGAATACGTTACAT 57.327 37.500 0.00 0.00 0.00 2.29
3287 14753 4.405116 AGAGCAGAAACATTTTGGCAAA 57.595 36.364 8.93 8.93 0.00 3.68
3319 14785 1.005924 CCAATGCTCCCCAGGTTACTT 59.994 52.381 0.00 0.00 0.00 2.24
3329 14798 4.090761 TCTGAATATCACCAATGCTCCC 57.909 45.455 0.00 0.00 0.00 4.30
3341 14810 7.856145 ACACAATGGACTTCTTCTGAATATC 57.144 36.000 0.00 0.00 0.00 1.63
3352 14821 4.499696 CCAAAGGACAACACAATGGACTTC 60.500 45.833 0.00 0.00 0.00 3.01
3361 14830 4.873746 TTTGAAACCAAAGGACAACACA 57.126 36.364 0.00 0.00 0.00 3.72
3362 14831 4.092821 GCTTTTGAAACCAAAGGACAACAC 59.907 41.667 0.00 0.00 33.91 3.32
3373 14842 4.959839 AGGGTTCTTTAGCTTTTGAAACCA 59.040 37.500 22.60 0.00 45.77 3.67
3375 14844 7.273320 AGTAGGGTTCTTTAGCTTTTGAAAC 57.727 36.000 0.00 0.00 0.00 2.78
3390 14860 6.154706 TCTCAAAGGAGAACATAGTAGGGTTC 59.845 42.308 8.67 8.67 46.94 3.62
3405 14875 2.504996 AGGCTTCCTGATCTCAAAGGAG 59.495 50.000 0.27 0.00 43.40 3.69
3406 14876 2.503356 GAGGCTTCCTGATCTCAAAGGA 59.497 50.000 0.00 0.00 40.91 3.36
3424 14894 0.684805 ACGAGGTAGAAGGCAGGAGG 60.685 60.000 0.00 0.00 0.00 4.30
3435 14905 5.681105 CACAACAAAATGAAACACGAGGTAG 59.319 40.000 0.00 0.00 0.00 3.18
3441 14911 5.336744 AGGTACACAACAAAATGAAACACG 58.663 37.500 0.00 0.00 0.00 4.49
3442 14912 7.452231 CAAAGGTACACAACAAAATGAAACAC 58.548 34.615 0.00 0.00 0.00 3.32
3447 14917 5.330455 TGCAAAGGTACACAACAAAATGA 57.670 34.783 0.00 0.00 0.00 2.57
3463 14933 8.822652 ATTTTCTGTAATCCTCTTTTGCAAAG 57.177 30.769 12.41 7.09 0.00 2.77
3482 14952 7.666623 ACCGGTCAAACATTTTATGATTTTCT 58.333 30.769 0.00 0.00 0.00 2.52
3500 14970 6.896021 TTTAAAAATACCATTGACCGGTCA 57.104 33.333 33.23 33.23 37.99 4.02
3501 14971 9.857957 TTTATTTAAAAATACCATTGACCGGTC 57.142 29.630 28.17 28.17 37.99 4.79
3533 15003 6.305693 ACTCTAACTTTCTGCAATCAACAC 57.694 37.500 0.00 0.00 0.00 3.32
3534 15004 6.147821 GCTACTCTAACTTTCTGCAATCAACA 59.852 38.462 0.00 0.00 0.00 3.33
3535 15005 6.370166 AGCTACTCTAACTTTCTGCAATCAAC 59.630 38.462 0.00 0.00 0.00 3.18
3536 15006 6.467677 AGCTACTCTAACTTTCTGCAATCAA 58.532 36.000 0.00 0.00 0.00 2.57
3537 15007 6.042638 AGCTACTCTAACTTTCTGCAATCA 57.957 37.500 0.00 0.00 0.00 2.57
3538 15008 6.591834 TCAAGCTACTCTAACTTTCTGCAATC 59.408 38.462 0.00 0.00 0.00 2.67
3539 15009 6.467677 TCAAGCTACTCTAACTTTCTGCAAT 58.532 36.000 0.00 0.00 0.00 3.56
3540 15010 5.853936 TCAAGCTACTCTAACTTTCTGCAA 58.146 37.500 0.00 0.00 0.00 4.08
3541 15011 5.468540 TCAAGCTACTCTAACTTTCTGCA 57.531 39.130 0.00 0.00 0.00 4.41
3542 15012 6.976636 ATTCAAGCTACTCTAACTTTCTGC 57.023 37.500 0.00 0.00 0.00 4.26
3543 15013 8.539770 TCAATTCAAGCTACTCTAACTTTCTG 57.460 34.615 0.00 0.00 0.00 3.02
3544 15014 8.589338 TCTCAATTCAAGCTACTCTAACTTTCT 58.411 33.333 0.00 0.00 0.00 2.52
3545 15015 8.652463 GTCTCAATTCAAGCTACTCTAACTTTC 58.348 37.037 0.00 0.00 0.00 2.62
3546 15016 8.150945 TGTCTCAATTCAAGCTACTCTAACTTT 58.849 33.333 0.00 0.00 0.00 2.66
3547 15017 7.671302 TGTCTCAATTCAAGCTACTCTAACTT 58.329 34.615 0.00 0.00 0.00 2.66
3548 15018 7.233389 TGTCTCAATTCAAGCTACTCTAACT 57.767 36.000 0.00 0.00 0.00 2.24
3549 15019 6.533367 CCTGTCTCAATTCAAGCTACTCTAAC 59.467 42.308 0.00 0.00 0.00 2.34
3550 15020 6.437477 TCCTGTCTCAATTCAAGCTACTCTAA 59.563 38.462 0.00 0.00 0.00 2.10
3551 15021 5.952347 TCCTGTCTCAATTCAAGCTACTCTA 59.048 40.000 0.00 0.00 0.00 2.43
3552 15022 4.774726 TCCTGTCTCAATTCAAGCTACTCT 59.225 41.667 0.00 0.00 0.00 3.24
3553 15023 5.078411 TCCTGTCTCAATTCAAGCTACTC 57.922 43.478 0.00 0.00 0.00 2.59
3554 15024 5.690464 ATCCTGTCTCAATTCAAGCTACT 57.310 39.130 0.00 0.00 0.00 2.57
3555 15025 6.183360 GGAAATCCTGTCTCAATTCAAGCTAC 60.183 42.308 0.00 0.00 0.00 3.58
3556 15026 5.882557 GGAAATCCTGTCTCAATTCAAGCTA 59.117 40.000 0.00 0.00 0.00 3.32
3557 15027 4.704057 GGAAATCCTGTCTCAATTCAAGCT 59.296 41.667 0.00 0.00 0.00 3.74
3558 15028 4.704057 AGGAAATCCTGTCTCAATTCAAGC 59.296 41.667 0.00 0.00 46.55 4.01
3583 15053 9.725206 AGGAACCTTTAAGACCATACTAGATAA 57.275 33.333 0.00 0.00 0.00 1.75
3585 15055 9.145442 GTAGGAACCTTTAAGACCATACTAGAT 57.855 37.037 0.00 0.00 0.00 1.98
3586 15056 8.342270 AGTAGGAACCTTTAAGACCATACTAGA 58.658 37.037 0.00 0.00 0.00 2.43
3587 15057 8.536340 AGTAGGAACCTTTAAGACCATACTAG 57.464 38.462 0.00 0.00 0.00 2.57
3588 15058 8.906238 AAGTAGGAACCTTTAAGACCATACTA 57.094 34.615 0.00 0.00 0.00 1.82
3589 15059 7.809880 AAGTAGGAACCTTTAAGACCATACT 57.190 36.000 0.00 0.00 0.00 2.12
3590 15060 8.756927 AGTAAGTAGGAACCTTTAAGACCATAC 58.243 37.037 0.00 0.00 0.00 2.39
3591 15061 8.906238 AGTAAGTAGGAACCTTTAAGACCATA 57.094 34.615 0.00 0.00 0.00 2.74
3592 15062 7.809880 AGTAAGTAGGAACCTTTAAGACCAT 57.190 36.000 0.00 0.00 0.00 3.55
3593 15063 7.729881 TGTAGTAAGTAGGAACCTTTAAGACCA 59.270 37.037 0.00 0.00 0.00 4.02
3594 15064 8.127150 TGTAGTAAGTAGGAACCTTTAAGACC 57.873 38.462 0.00 0.00 0.00 3.85
3601 15071 9.275572 TGGAAATATGTAGTAAGTAGGAACCTT 57.724 33.333 0.00 0.00 0.00 3.50
3602 15072 8.849543 TGGAAATATGTAGTAAGTAGGAACCT 57.150 34.615 0.00 0.00 0.00 3.50
3603 15073 9.895138 TTTGGAAATATGTAGTAAGTAGGAACC 57.105 33.333 0.00 0.00 0.00 3.62
3610 15080 9.780186 GCTAGGATTTGGAAATATGTAGTAAGT 57.220 33.333 0.00 0.00 0.00 2.24
3613 15083 9.998106 GAAGCTAGGATTTGGAAATATGTAGTA 57.002 33.333 0.00 0.00 0.00 1.82
3614 15084 8.718656 AGAAGCTAGGATTTGGAAATATGTAGT 58.281 33.333 0.00 0.00 0.00 2.73
3616 15086 9.998106 GTAGAAGCTAGGATTTGGAAATATGTA 57.002 33.333 0.00 0.00 0.00 2.29
3617 15087 8.718656 AGTAGAAGCTAGGATTTGGAAATATGT 58.281 33.333 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.