Multiple sequence alignment - TraesCS1D01G043300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G043300 chr1D 100.000 3322 0 0 1 3322 22438644 22435323 0.000000e+00 6135
1 TraesCS1D01G043300 chr1B 91.796 2121 81 46 345 2404 37798397 37800485 0.000000e+00 2867
2 TraesCS1D01G043300 chr1B 91.218 706 37 14 2633 3322 37800663 37801359 0.000000e+00 937
3 TraesCS1D01G043300 chr1A 88.632 2208 139 42 214 2378 23338705 23340843 0.000000e+00 2584
4 TraesCS1D01G043300 chr1A 88.730 701 37 15 2638 3322 23340952 23341626 0.000000e+00 819
5 TraesCS1D01G043300 chr1A 80.928 194 23 7 2413 2592 41515825 41515632 1.240000e-29 141
6 TraesCS1D01G043300 chr4D 82.843 204 29 6 1402 1602 315597321 315597521 9.470000e-41 178
7 TraesCS1D01G043300 chr4B 82.353 204 30 6 1402 1602 393406268 393406468 4.410000e-39 172
8 TraesCS1D01G043300 chr4A 82.353 204 30 6 1402 1602 159294855 159294655 4.410000e-39 172
9 TraesCS1D01G043300 chr2A 82.902 193 29 4 1412 1602 51008487 51008297 1.580000e-38 171
10 TraesCS1D01G043300 chr2A 77.895 190 28 6 2404 2592 533899674 533899498 4.530000e-19 106
11 TraesCS1D01G043300 chr2D 82.383 193 30 4 1412 1602 48133251 48133441 7.370000e-37 165
12 TraesCS1D01G043300 chr2D 84.375 160 13 6 2410 2558 618204925 618204767 2.670000e-31 147
13 TraesCS1D01G043300 chr2B 82.383 193 30 4 1412 1602 75847568 75847758 7.370000e-37 165
14 TraesCS1D01G043300 chr2B 81.707 164 20 1 2410 2563 156595358 156595521 9.670000e-26 128
15 TraesCS1D01G043300 chr7D 92.035 113 8 1 2408 2520 2351350 2351239 1.230000e-34 158
16 TraesCS1D01G043300 chr7D 91.964 112 8 1 2408 2519 3780611 3780501 4.440000e-34 156
17 TraesCS1D01G043300 chr3B 80.392 204 40 0 1402 1605 829542126 829541923 4.440000e-34 156
18 TraesCS1D01G043300 chr3B 87.963 108 12 1 2406 2513 654067861 654067967 3.480000e-25 126
19 TraesCS1D01G043300 chr7B 80.808 198 26 6 2406 2592 695899521 695899325 9.610000e-31 145
20 TraesCS1D01G043300 chr7A 80.000 200 27 7 2409 2597 641636737 641636540 5.780000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G043300 chr1D 22435323 22438644 3321 True 6135.0 6135 100.000 1 3322 1 chr1D.!!$R1 3321
1 TraesCS1D01G043300 chr1B 37798397 37801359 2962 False 1902.0 2867 91.507 345 3322 2 chr1B.!!$F1 2977
2 TraesCS1D01G043300 chr1A 23338705 23341626 2921 False 1701.5 2584 88.681 214 3322 2 chr1A.!!$F1 3108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 978 0.039074 CTCGCCATGGATCGAGTACC 60.039 60.0 25.26 2.51 44.95 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2443 2538 0.108756 AGCGTTTAGAAGAGGTCCGC 60.109 55.0 0.0 0.0 39.91 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.241317 GCTAGTTTAAAAACTGGAACTTAAACC 57.759 33.333 19.44 0.00 46.61 3.27
43 44 9.740239 CTAGTTTAAAAACTGGAACTTAAACCC 57.260 33.333 16.48 0.00 46.61 4.11
44 45 8.370266 AGTTTAAAAACTGGAACTTAAACCCT 57.630 30.769 7.29 0.00 46.80 4.34
45 46 9.478238 AGTTTAAAAACTGGAACTTAAACCCTA 57.522 29.630 7.29 0.00 46.80 3.53
49 50 7.721409 AAAACTGGAACTTAAACCCTAAACA 57.279 32.000 0.00 0.00 0.00 2.83
50 51 6.704289 AACTGGAACTTAAACCCTAAACAC 57.296 37.500 0.00 0.00 0.00 3.32
51 52 6.009908 ACTGGAACTTAAACCCTAAACACT 57.990 37.500 0.00 0.00 0.00 3.55
52 53 7.140522 ACTGGAACTTAAACCCTAAACACTA 57.859 36.000 0.00 0.00 0.00 2.74
53 54 7.576403 ACTGGAACTTAAACCCTAAACACTAA 58.424 34.615 0.00 0.00 0.00 2.24
54 55 7.718314 ACTGGAACTTAAACCCTAAACACTAAG 59.282 37.037 0.00 0.00 0.00 2.18
55 56 6.487668 TGGAACTTAAACCCTAAACACTAAGC 59.512 38.462 0.00 0.00 0.00 3.09
56 57 6.072286 GGAACTTAAACCCTAAACACTAAGCC 60.072 42.308 0.00 0.00 0.00 4.35
57 58 5.319453 ACTTAAACCCTAAACACTAAGCCC 58.681 41.667 0.00 0.00 0.00 5.19
58 59 5.074102 ACTTAAACCCTAAACACTAAGCCCT 59.926 40.000 0.00 0.00 0.00 5.19
59 60 6.273026 ACTTAAACCCTAAACACTAAGCCCTA 59.727 38.462 0.00 0.00 0.00 3.53
60 61 5.587760 AAACCCTAAACACTAAGCCCTAA 57.412 39.130 0.00 0.00 0.00 2.69
61 62 5.587760 AACCCTAAACACTAAGCCCTAAA 57.412 39.130 0.00 0.00 0.00 1.85
62 63 5.175388 ACCCTAAACACTAAGCCCTAAAG 57.825 43.478 0.00 0.00 0.00 1.85
63 64 3.945921 CCCTAAACACTAAGCCCTAAAGC 59.054 47.826 0.00 0.00 0.00 3.51
64 65 3.945921 CCTAAACACTAAGCCCTAAAGCC 59.054 47.826 0.00 0.00 0.00 4.35
65 66 2.509166 AACACTAAGCCCTAAAGCCC 57.491 50.000 0.00 0.00 0.00 5.19
66 67 0.624254 ACACTAAGCCCTAAAGCCCC 59.376 55.000 0.00 0.00 0.00 5.80
67 68 0.623723 CACTAAGCCCTAAAGCCCCA 59.376 55.000 0.00 0.00 0.00 4.96
68 69 1.005450 CACTAAGCCCTAAAGCCCCAA 59.995 52.381 0.00 0.00 0.00 4.12
69 70 1.714217 ACTAAGCCCTAAAGCCCCAAA 59.286 47.619 0.00 0.00 0.00 3.28
70 71 2.111077 ACTAAGCCCTAAAGCCCCAAAA 59.889 45.455 0.00 0.00 0.00 2.44
71 72 1.348064 AAGCCCTAAAGCCCCAAAAC 58.652 50.000 0.00 0.00 0.00 2.43
72 73 0.544357 AGCCCTAAAGCCCCAAAACC 60.544 55.000 0.00 0.00 0.00 3.27
73 74 1.550130 GCCCTAAAGCCCCAAAACCC 61.550 60.000 0.00 0.00 0.00 4.11
74 75 0.116342 CCCTAAAGCCCCAAAACCCT 59.884 55.000 0.00 0.00 0.00 4.34
75 76 1.359818 CCCTAAAGCCCCAAAACCCTA 59.640 52.381 0.00 0.00 0.00 3.53
76 77 2.225420 CCCTAAAGCCCCAAAACCCTAA 60.225 50.000 0.00 0.00 0.00 2.69
77 78 3.512496 CCTAAAGCCCCAAAACCCTAAA 58.488 45.455 0.00 0.00 0.00 1.85
78 79 3.904965 CCTAAAGCCCCAAAACCCTAAAA 59.095 43.478 0.00 0.00 0.00 1.52
79 80 4.020573 CCTAAAGCCCCAAAACCCTAAAAG 60.021 45.833 0.00 0.00 0.00 2.27
80 81 1.348064 AGCCCCAAAACCCTAAAAGC 58.652 50.000 0.00 0.00 0.00 3.51
81 82 1.052617 GCCCCAAAACCCTAAAAGCA 58.947 50.000 0.00 0.00 0.00 3.91
82 83 1.270625 GCCCCAAAACCCTAAAAGCAC 60.271 52.381 0.00 0.00 0.00 4.40
83 84 2.043227 CCCCAAAACCCTAAAAGCACA 58.957 47.619 0.00 0.00 0.00 4.57
84 85 2.637382 CCCCAAAACCCTAAAAGCACAT 59.363 45.455 0.00 0.00 0.00 3.21
85 86 3.556843 CCCCAAAACCCTAAAAGCACATG 60.557 47.826 0.00 0.00 0.00 3.21
86 87 3.323403 CCCAAAACCCTAAAAGCACATGA 59.677 43.478 0.00 0.00 0.00 3.07
87 88 4.202305 CCCAAAACCCTAAAAGCACATGAA 60.202 41.667 0.00 0.00 0.00 2.57
88 89 5.363939 CCAAAACCCTAAAAGCACATGAAA 58.636 37.500 0.00 0.00 0.00 2.69
89 90 5.997129 CCAAAACCCTAAAAGCACATGAAAT 59.003 36.000 0.00 0.00 0.00 2.17
90 91 6.486320 CCAAAACCCTAAAAGCACATGAAATT 59.514 34.615 0.00 0.00 0.00 1.82
91 92 7.013178 CCAAAACCCTAAAAGCACATGAAATTT 59.987 33.333 0.00 0.00 0.00 1.82
92 93 7.495135 AAACCCTAAAAGCACATGAAATTTG 57.505 32.000 0.00 0.00 0.00 2.32
93 94 5.550290 ACCCTAAAAGCACATGAAATTTGG 58.450 37.500 0.00 0.00 0.00 3.28
94 95 5.071653 ACCCTAAAAGCACATGAAATTTGGT 59.928 36.000 0.00 0.00 36.08 3.67
95 96 5.409214 CCCTAAAAGCACATGAAATTTGGTG 59.591 40.000 0.00 2.70 34.57 4.17
96 97 5.990996 CCTAAAAGCACATGAAATTTGGTGT 59.009 36.000 0.00 0.00 34.57 4.16
97 98 7.151308 CCTAAAAGCACATGAAATTTGGTGTA 58.849 34.615 0.00 0.00 34.57 2.90
98 99 7.655328 CCTAAAAGCACATGAAATTTGGTGTAA 59.345 33.333 0.00 0.00 34.57 2.41
99 100 6.843069 AAAGCACATGAAATTTGGTGTAAC 57.157 33.333 0.00 0.00 34.57 2.50
100 101 5.789643 AGCACATGAAATTTGGTGTAACT 57.210 34.783 0.00 0.00 32.85 2.24
101 102 6.160576 AGCACATGAAATTTGGTGTAACTT 57.839 33.333 0.00 0.00 32.85 2.66
102 103 5.984926 AGCACATGAAATTTGGTGTAACTTG 59.015 36.000 0.00 0.00 32.85 3.16
103 104 5.177327 GCACATGAAATTTGGTGTAACTTGG 59.823 40.000 0.00 0.00 36.74 3.61
104 105 5.177327 CACATGAAATTTGGTGTAACTTGGC 59.823 40.000 0.00 0.00 36.74 4.52
105 106 5.163364 ACATGAAATTTGGTGTAACTTGGCA 60.163 36.000 0.00 0.00 36.74 4.92
106 107 5.344743 TGAAATTTGGTGTAACTTGGCAA 57.655 34.783 0.00 0.00 36.74 4.52
107 108 5.734720 TGAAATTTGGTGTAACTTGGCAAA 58.265 33.333 0.00 0.00 36.74 3.68
108 109 6.173339 TGAAATTTGGTGTAACTTGGCAAAA 58.827 32.000 0.00 0.00 36.74 2.44
109 110 6.825721 TGAAATTTGGTGTAACTTGGCAAAAT 59.174 30.769 0.00 0.00 36.74 1.82
110 111 7.337942 TGAAATTTGGTGTAACTTGGCAAAATT 59.662 29.630 0.00 1.36 36.74 1.82
111 112 7.637631 AATTTGGTGTAACTTGGCAAAATTT 57.362 28.000 0.00 0.00 36.74 1.82
112 113 8.738645 AATTTGGTGTAACTTGGCAAAATTTA 57.261 26.923 0.00 0.00 36.74 1.40
113 114 8.916628 ATTTGGTGTAACTTGGCAAAATTTAT 57.083 26.923 0.00 0.00 36.74 1.40
114 115 8.738645 TTTGGTGTAACTTGGCAAAATTTATT 57.261 26.923 0.00 0.00 36.74 1.40
115 116 8.738645 TTGGTGTAACTTGGCAAAATTTATTT 57.261 26.923 0.00 0.00 36.74 1.40
116 117 9.832445 TTGGTGTAACTTGGCAAAATTTATTTA 57.168 25.926 0.00 0.00 36.74 1.40
117 118 9.832445 TGGTGTAACTTGGCAAAATTTATTTAA 57.168 25.926 0.00 0.00 36.74 1.52
184 185 8.388319 TGTTTTAAAAGTTGTCAAGATGAACG 57.612 30.769 0.00 0.00 0.00 3.95
185 186 7.008810 TGTTTTAAAAGTTGTCAAGATGAACGC 59.991 33.333 0.00 0.00 0.00 4.84
186 187 4.630894 AAAAGTTGTCAAGATGAACGCA 57.369 36.364 0.00 0.00 0.00 5.24
187 188 4.630894 AAAGTTGTCAAGATGAACGCAA 57.369 36.364 0.00 0.00 0.00 4.85
189 190 3.466836 AGTTGTCAAGATGAACGCAAGA 58.533 40.909 0.00 0.00 43.62 3.02
190 191 4.067896 AGTTGTCAAGATGAACGCAAGAT 58.932 39.130 0.00 0.00 43.62 2.40
191 192 4.516698 AGTTGTCAAGATGAACGCAAGATT 59.483 37.500 0.00 0.00 43.62 2.40
192 193 4.408993 TGTCAAGATGAACGCAAGATTG 57.591 40.909 0.00 0.00 43.62 2.67
208 209 5.859205 AAGATTGCTCTTGTGGAAGTTTT 57.141 34.783 0.00 0.00 40.28 2.43
209 210 5.444663 AGATTGCTCTTGTGGAAGTTTTC 57.555 39.130 0.00 0.00 0.00 2.29
210 211 3.691049 TTGCTCTTGTGGAAGTTTTCG 57.309 42.857 0.00 0.00 0.00 3.46
211 212 2.639065 TGCTCTTGTGGAAGTTTTCGT 58.361 42.857 0.00 0.00 0.00 3.85
212 213 2.612212 TGCTCTTGTGGAAGTTTTCGTC 59.388 45.455 0.00 0.00 0.00 4.20
213 214 2.612212 GCTCTTGTGGAAGTTTTCGTCA 59.388 45.455 0.00 0.00 0.00 4.35
214 215 3.251004 GCTCTTGTGGAAGTTTTCGTCAT 59.749 43.478 0.00 0.00 0.00 3.06
215 216 4.776743 CTCTTGTGGAAGTTTTCGTCATG 58.223 43.478 0.00 0.00 0.00 3.07
216 217 4.447290 TCTTGTGGAAGTTTTCGTCATGA 58.553 39.130 0.00 0.00 0.00 3.07
217 218 4.272504 TCTTGTGGAAGTTTTCGTCATGAC 59.727 41.667 16.21 16.21 0.00 3.06
397 401 1.406539 GCATGCGAATCTCCAACCAAT 59.593 47.619 0.00 0.00 0.00 3.16
422 426 4.946157 GGATGGCAAGAATCTCTTTTCTCA 59.054 41.667 0.00 0.00 33.78 3.27
485 489 6.757010 ACTACCGAATCATATGTGTTGAGTTC 59.243 38.462 1.90 0.00 0.00 3.01
509 513 3.660111 GTGTTGGTGCCGTGAGCC 61.660 66.667 0.00 0.00 42.71 4.70
613 618 5.334569 GGTTCCATCGTGAAGAAAAATCGAA 60.335 40.000 0.00 0.00 34.38 3.71
614 619 6.314784 GTTCCATCGTGAAGAAAAATCGAAT 58.685 36.000 0.00 0.00 34.38 3.34
615 620 6.106877 TCCATCGTGAAGAAAAATCGAATC 57.893 37.500 0.00 0.00 34.38 2.52
734 744 1.860950 CATGGCTAATCAAGTCGTCGG 59.139 52.381 0.00 0.00 29.81 4.79
735 745 1.179152 TGGCTAATCAAGTCGTCGGA 58.821 50.000 0.00 0.00 29.81 4.55
736 746 1.134367 TGGCTAATCAAGTCGTCGGAG 59.866 52.381 0.00 0.00 29.81 4.63
737 747 1.134560 GGCTAATCAAGTCGTCGGAGT 59.865 52.381 0.00 0.00 0.00 3.85
738 748 2.452105 GCTAATCAAGTCGTCGGAGTC 58.548 52.381 0.00 0.00 0.00 3.36
739 749 2.159421 GCTAATCAAGTCGTCGGAGTCA 60.159 50.000 0.00 0.00 0.00 3.41
751 761 2.439409 TCGGAGTCAGGATACGACAAA 58.561 47.619 0.00 0.00 46.39 2.83
776 796 3.095912 TGACAGGCAGGTAGCTAGTAA 57.904 47.619 0.00 0.00 44.79 2.24
854 881 4.467084 CCGGATCCACCACCACCG 62.467 72.222 13.41 0.00 42.67 4.94
855 882 3.702048 CGGATCCACCACCACCGT 61.702 66.667 13.41 0.00 38.97 4.83
856 883 2.046314 GGATCCACCACCACCGTG 60.046 66.667 6.95 0.00 39.91 4.94
857 884 2.746277 GATCCACCACCACCGTGC 60.746 66.667 0.00 0.00 38.79 5.34
858 885 3.545124 GATCCACCACCACCGTGCA 62.545 63.158 0.00 0.00 38.79 4.57
859 886 3.842925 ATCCACCACCACCGTGCAC 62.843 63.158 6.82 6.82 38.79 4.57
935 962 1.662438 GCCACTCACTCTCTCCCTCG 61.662 65.000 0.00 0.00 0.00 4.63
942 969 1.456518 CTCTCTCCCTCGCCATGGA 60.457 63.158 18.40 0.00 0.00 3.41
943 970 0.831288 CTCTCTCCCTCGCCATGGAT 60.831 60.000 18.40 0.00 0.00 3.41
945 972 2.152297 CTCTCCCTCGCCATGGATCG 62.152 65.000 18.40 11.02 0.00 3.69
950 977 3.481009 CTCGCCATGGATCGAGTAC 57.519 57.895 25.26 3.16 44.95 2.73
951 978 0.039074 CTCGCCATGGATCGAGTACC 60.039 60.000 25.26 2.51 44.95 3.34
952 979 0.753848 TCGCCATGGATCGAGTACCA 60.754 55.000 18.40 10.37 40.57 3.25
953 980 0.318441 CGCCATGGATCGAGTACCAT 59.682 55.000 18.40 13.42 46.22 3.55
960 987 3.572642 TGGATCGAGTACCATGTACCAT 58.427 45.455 4.95 0.00 0.00 3.55
961 988 3.572682 TGGATCGAGTACCATGTACCATC 59.427 47.826 4.95 1.77 0.00 3.51
962 989 3.366070 GGATCGAGTACCATGTACCATCG 60.366 52.174 8.77 8.77 0.00 3.84
1029 1069 1.002888 CATTAGCATCCATCTCCGGCT 59.997 52.381 0.00 0.00 38.55 5.52
1044 1085 0.110823 CGGCTAGCAACACAAACGAC 60.111 55.000 18.24 0.00 0.00 4.34
1073 1114 5.482175 TCTTTCTCCTCTTTCTTCAGGGTAG 59.518 44.000 0.00 0.00 0.00 3.18
1075 1116 4.345854 TCTCCTCTTTCTTCAGGGTAGTC 58.654 47.826 0.00 0.00 0.00 2.59
1086 1131 3.525545 GGTAGTCGGCCGGAGTCC 61.526 72.222 27.83 18.73 0.00 3.85
1115 1160 2.358247 GGCGGCGAAGACTCCAAA 60.358 61.111 12.98 0.00 0.00 3.28
1137 1187 5.136816 AGAGGATCATCATCAGTTCATCG 57.863 43.478 10.44 0.00 37.82 3.84
1140 1190 3.186001 GGATCATCATCAGTTCATCGCAC 59.814 47.826 0.00 0.00 0.00 5.34
1142 1192 3.598299 TCATCATCAGTTCATCGCACAA 58.402 40.909 0.00 0.00 0.00 3.33
1327 1377 1.473434 GGGTGATCGATCCAACCTGAC 60.473 57.143 25.75 15.17 38.34 3.51
1549 1601 3.461773 CGGTGGTCCAGGATCGCT 61.462 66.667 13.23 0.00 0.00 4.93
1663 1715 3.468326 GAAGGCCTCATCCTCGCCC 62.468 68.421 5.23 0.00 44.13 6.13
1676 1728 4.150454 CGCCCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
1679 1731 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
1680 1732 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1765 1829 1.687493 GCCCCAGGAGAGCACTACT 60.687 63.158 0.00 0.00 37.91 2.57
1766 1830 0.397254 GCCCCAGGAGAGCACTACTA 60.397 60.000 0.00 0.00 34.65 1.82
1767 1831 1.404843 CCCCAGGAGAGCACTACTAC 58.595 60.000 0.00 0.00 34.65 2.73
1768 1832 1.063567 CCCCAGGAGAGCACTACTACT 60.064 57.143 0.00 0.00 34.65 2.57
2072 2136 2.351111 GCTCTGAATTGAGAGGCTTTCG 59.649 50.000 21.41 0.00 40.04 3.46
2198 2282 6.653020 TGTGAGATTATATTGGTGACAGCTT 58.347 36.000 6.17 0.00 44.54 3.74
2203 2287 7.260603 AGATTATATTGGTGACAGCTTTTTGC 58.739 34.615 6.17 0.00 44.54 3.68
2276 2368 9.693157 CAAAATGAACTTGTCAAAATCAAAGAC 57.307 29.630 4.57 0.00 40.50 3.01
2284 2376 6.757897 TGTCAAAATCAAAGACAGTGAACT 57.242 33.333 0.00 0.00 37.36 3.01
2285 2377 7.857734 TGTCAAAATCAAAGACAGTGAACTA 57.142 32.000 0.00 0.00 37.36 2.24
2286 2378 7.919690 TGTCAAAATCAAAGACAGTGAACTAG 58.080 34.615 0.00 0.00 37.36 2.57
2288 2380 8.778358 GTCAAAATCAAAGACAGTGAACTAGAT 58.222 33.333 0.00 1.46 32.68 1.98
2294 2389 6.863645 TCAAAGACAGTGAACTAGATTTCTCG 59.136 38.462 0.00 0.00 0.00 4.04
2299 2394 5.241949 ACAGTGAACTAGATTTCTCGTCTGT 59.758 40.000 0.00 3.19 0.00 3.41
2332 2427 6.640518 TCGATAAGACAAATACTTTGCCTCT 58.359 36.000 0.00 0.00 44.39 3.69
2344 2439 4.672409 ACTTTGCCTCTGTTTCGAAAAAG 58.328 39.130 20.18 20.18 0.00 2.27
2400 2495 3.817647 GGAGAGAGATGCACAAAGTTTGT 59.182 43.478 15.58 15.58 46.75 2.83
2434 2529 9.515226 TCATAGTTTTAAATAGTGGGATATGCC 57.485 33.333 6.26 6.26 0.00 4.40
2435 2530 9.520515 CATAGTTTTAAATAGTGGGATATGCCT 57.479 33.333 15.02 0.00 36.66 4.75
2436 2531 9.740710 ATAGTTTTAAATAGTGGGATATGCCTC 57.259 33.333 15.02 11.01 36.66 4.70
2437 2532 7.816411 AGTTTTAAATAGTGGGATATGCCTCT 58.184 34.615 19.92 19.92 36.66 3.69
2438 2533 8.282256 AGTTTTAAATAGTGGGATATGCCTCTT 58.718 33.333 21.01 7.96 36.66 2.85
2439 2534 9.569122 GTTTTAAATAGTGGGATATGCCTCTTA 57.431 33.333 21.01 7.06 36.66 2.10
2440 2535 9.793259 TTTTAAATAGTGGGATATGCCTCTTAG 57.207 33.333 21.01 0.00 36.66 2.18
2441 2536 5.428184 AATAGTGGGATATGCCTCTTAGC 57.572 43.478 21.01 2.62 36.66 3.09
2442 2537 1.620819 AGTGGGATATGCCTCTTAGCG 59.379 52.381 15.02 0.00 36.66 4.26
2443 2538 0.976641 TGGGATATGCCTCTTAGCGG 59.023 55.000 15.02 0.00 36.66 5.52
2449 2544 4.893601 GCCTCTTAGCGGCGGACC 62.894 72.222 9.78 0.00 37.87 4.46
2450 2545 3.148279 CCTCTTAGCGGCGGACCT 61.148 66.667 9.78 0.00 0.00 3.85
2451 2546 2.413765 CTCTTAGCGGCGGACCTC 59.586 66.667 9.78 0.00 0.00 3.85
2452 2547 2.044252 TCTTAGCGGCGGACCTCT 60.044 61.111 9.78 0.00 34.60 3.69
2453 2548 1.668101 CTCTTAGCGGCGGACCTCTT 61.668 60.000 9.78 0.00 31.87 2.85
2454 2549 1.227002 CTTAGCGGCGGACCTCTTC 60.227 63.158 9.78 0.00 31.87 2.87
2455 2550 1.668101 CTTAGCGGCGGACCTCTTCT 61.668 60.000 9.78 0.00 31.87 2.85
2456 2551 0.394762 TTAGCGGCGGACCTCTTCTA 60.395 55.000 9.78 0.00 31.87 2.10
2457 2552 0.394762 TAGCGGCGGACCTCTTCTAA 60.395 55.000 9.78 0.00 31.87 2.10
2458 2553 1.217244 GCGGCGGACCTCTTCTAAA 59.783 57.895 9.78 0.00 0.00 1.85
2459 2554 1.082679 GCGGCGGACCTCTTCTAAAC 61.083 60.000 9.78 0.00 0.00 2.01
2460 2555 0.801067 CGGCGGACCTCTTCTAAACG 60.801 60.000 0.00 0.00 0.00 3.60
2461 2556 1.082679 GGCGGACCTCTTCTAAACGC 61.083 60.000 0.00 0.00 44.20 4.84
2462 2557 0.108756 GCGGACCTCTTCTAAACGCT 60.109 55.000 0.00 0.00 41.99 5.07
2463 2558 1.133790 GCGGACCTCTTCTAAACGCTA 59.866 52.381 0.00 0.00 41.99 4.26
2464 2559 2.223758 GCGGACCTCTTCTAAACGCTAT 60.224 50.000 0.00 0.00 41.99 2.97
2465 2560 3.004106 GCGGACCTCTTCTAAACGCTATA 59.996 47.826 0.00 0.00 41.99 1.31
2466 2561 4.785417 CGGACCTCTTCTAAACGCTATAG 58.215 47.826 0.00 0.00 0.00 1.31
2467 2562 4.548494 GGACCTCTTCTAAACGCTATAGC 58.452 47.826 15.09 15.09 37.78 2.97
2468 2563 4.037684 GGACCTCTTCTAAACGCTATAGCA 59.962 45.833 23.99 3.96 42.21 3.49
2469 2564 5.451520 GGACCTCTTCTAAACGCTATAGCAA 60.452 44.000 23.99 8.89 42.21 3.91
2470 2565 6.163135 ACCTCTTCTAAACGCTATAGCAAT 57.837 37.500 23.99 9.03 42.21 3.56
2471 2566 5.986135 ACCTCTTCTAAACGCTATAGCAATG 59.014 40.000 23.99 10.70 42.21 2.82
2472 2567 5.107298 CCTCTTCTAAACGCTATAGCAATGC 60.107 44.000 23.99 0.00 42.21 3.56
2473 2568 5.601662 TCTTCTAAACGCTATAGCAATGCT 58.398 37.500 23.99 13.92 43.41 3.79
2474 2569 6.745116 TCTTCTAAACGCTATAGCAATGCTA 58.255 36.000 23.99 17.97 45.55 3.49
2513 2608 8.419076 AAAATGTTTGTTCATGTGTTTAGACC 57.581 30.769 0.00 0.00 0.00 3.85
2514 2609 6.707440 ATGTTTGTTCATGTGTTTAGACCA 57.293 33.333 0.00 0.00 0.00 4.02
2515 2610 6.516739 TGTTTGTTCATGTGTTTAGACCAA 57.483 33.333 0.00 0.00 0.00 3.67
2516 2611 6.925211 TGTTTGTTCATGTGTTTAGACCAAA 58.075 32.000 0.00 0.00 0.00 3.28
2517 2612 7.032580 TGTTTGTTCATGTGTTTAGACCAAAG 58.967 34.615 0.00 0.00 0.00 2.77
2518 2613 6.767524 TTGTTCATGTGTTTAGACCAAAGT 57.232 33.333 0.00 0.00 0.00 2.66
2519 2614 6.371809 TGTTCATGTGTTTAGACCAAAGTC 57.628 37.500 0.00 0.00 43.89 3.01
2533 2628 6.809630 GACCAAAGTCTTTTAGCTCAAGAT 57.190 37.500 10.65 0.00 40.10 2.40
2534 2629 6.809630 ACCAAAGTCTTTTAGCTCAAGATC 57.190 37.500 10.65 6.04 32.86 2.75
2535 2630 6.299141 ACCAAAGTCTTTTAGCTCAAGATCA 58.701 36.000 10.65 0.00 32.86 2.92
2536 2631 6.205658 ACCAAAGTCTTTTAGCTCAAGATCAC 59.794 38.462 10.65 1.16 32.86 3.06
2537 2632 6.429385 CCAAAGTCTTTTAGCTCAAGATCACT 59.571 38.462 10.65 3.10 32.86 3.41
2538 2633 7.040823 CCAAAGTCTTTTAGCTCAAGATCACTT 60.041 37.037 10.65 7.93 32.86 3.16
2539 2634 7.665561 AAGTCTTTTAGCTCAAGATCACTTC 57.334 36.000 10.65 0.00 32.86 3.01
2540 2635 7.003402 AGTCTTTTAGCTCAAGATCACTTCT 57.997 36.000 10.65 1.46 32.86 2.85
2541 2636 8.128322 AGTCTTTTAGCTCAAGATCACTTCTA 57.872 34.615 10.65 0.00 32.86 2.10
2542 2637 8.589338 AGTCTTTTAGCTCAAGATCACTTCTAA 58.411 33.333 10.65 0.00 32.86 2.10
2543 2638 9.209175 GTCTTTTAGCTCAAGATCACTTCTAAA 57.791 33.333 10.65 0.00 32.88 1.85
2544 2639 9.950496 TCTTTTAGCTCAAGATCACTTCTAAAT 57.050 29.630 4.48 0.00 33.81 1.40
2545 2640 9.985318 CTTTTAGCTCAAGATCACTTCTAAATG 57.015 33.333 0.00 1.89 33.81 2.32
2546 2641 7.545362 TTAGCTCAAGATCACTTCTAAATGC 57.455 36.000 0.00 0.00 33.05 3.56
2547 2642 5.743117 AGCTCAAGATCACTTCTAAATGCT 58.257 37.500 0.00 0.00 33.05 3.79
2548 2643 6.882656 AGCTCAAGATCACTTCTAAATGCTA 58.117 36.000 0.00 0.00 33.05 3.49
2549 2644 7.507829 AGCTCAAGATCACTTCTAAATGCTAT 58.492 34.615 0.00 0.00 33.05 2.97
2550 2645 8.646004 AGCTCAAGATCACTTCTAAATGCTATA 58.354 33.333 0.00 0.00 33.05 1.31
2551 2646 9.265901 GCTCAAGATCACTTCTAAATGCTATAA 57.734 33.333 0.00 0.00 33.05 0.98
2556 2651 8.997323 AGATCACTTCTAAATGCTATAATGTGC 58.003 33.333 0.00 0.00 30.96 4.57
2557 2652 8.915057 ATCACTTCTAAATGCTATAATGTGCT 57.085 30.769 0.00 0.00 0.00 4.40
2558 2653 8.370493 TCACTTCTAAATGCTATAATGTGCTC 57.630 34.615 0.00 0.00 0.00 4.26
2559 2654 8.206867 TCACTTCTAAATGCTATAATGTGCTCT 58.793 33.333 0.00 0.00 0.00 4.09
2560 2655 9.481340 CACTTCTAAATGCTATAATGTGCTCTA 57.519 33.333 0.00 0.00 0.00 2.43
2561 2656 9.703892 ACTTCTAAATGCTATAATGTGCTCTAG 57.296 33.333 0.00 0.00 0.00 2.43
2562 2657 8.539770 TTCTAAATGCTATAATGTGCTCTAGC 57.460 34.615 0.00 0.00 42.50 3.42
2563 2658 5.852738 AAATGCTATAATGTGCTCTAGCG 57.147 39.130 0.00 0.00 45.83 4.26
2564 2659 3.303881 TGCTATAATGTGCTCTAGCGG 57.696 47.619 0.00 0.00 45.83 5.52
2565 2660 2.890945 TGCTATAATGTGCTCTAGCGGA 59.109 45.455 0.00 0.00 45.83 5.54
2566 2661 3.246619 GCTATAATGTGCTCTAGCGGAC 58.753 50.000 0.00 0.00 45.83 4.79
2567 2662 2.821991 ATAATGTGCTCTAGCGGACC 57.178 50.000 1.66 0.00 45.83 4.46
2568 2663 1.776662 TAATGTGCTCTAGCGGACCT 58.223 50.000 1.66 0.00 45.83 3.85
2569 2664 1.776662 AATGTGCTCTAGCGGACCTA 58.223 50.000 1.66 0.00 45.83 3.08
2570 2665 2.002505 ATGTGCTCTAGCGGACCTAT 57.997 50.000 1.66 0.00 45.83 2.57
2571 2666 2.651382 TGTGCTCTAGCGGACCTATA 57.349 50.000 1.66 0.00 45.83 1.31
2572 2667 2.505405 TGTGCTCTAGCGGACCTATAG 58.495 52.381 1.66 0.00 45.83 1.31
2573 2668 1.200484 GTGCTCTAGCGGACCTATAGC 59.800 57.143 0.00 0.00 43.12 2.97
2574 2669 1.535833 GCTCTAGCGGACCTATAGCA 58.464 55.000 0.00 0.00 42.64 3.49
2575 2670 2.096248 GCTCTAGCGGACCTATAGCAT 58.904 52.381 0.00 0.00 42.64 3.79
2576 2671 2.159310 GCTCTAGCGGACCTATAGCATG 60.159 54.545 0.00 0.00 42.64 4.06
2577 2672 1.819288 TCTAGCGGACCTATAGCATGC 59.181 52.381 10.51 10.51 0.00 4.06
2578 2673 1.821753 CTAGCGGACCTATAGCATGCT 59.178 52.381 25.99 25.99 35.12 3.79
2579 2674 1.924731 AGCGGACCTATAGCATGCTA 58.075 50.000 28.72 28.72 0.00 3.49
2580 2675 2.461695 AGCGGACCTATAGCATGCTAT 58.538 47.619 35.68 35.68 41.58 2.97
2581 2676 2.834549 AGCGGACCTATAGCATGCTATT 59.165 45.455 37.80 24.27 39.65 1.73
2582 2677 3.261897 AGCGGACCTATAGCATGCTATTT 59.738 43.478 37.80 24.87 39.65 1.40
2583 2678 4.466370 AGCGGACCTATAGCATGCTATTTA 59.534 41.667 37.80 23.59 39.65 1.40
2584 2679 5.046591 AGCGGACCTATAGCATGCTATTTAA 60.047 40.000 37.80 22.94 39.65 1.52
2585 2680 5.642063 GCGGACCTATAGCATGCTATTTAAA 59.358 40.000 37.80 22.62 39.65 1.52
2586 2681 6.148811 GCGGACCTATAGCATGCTATTTAAAA 59.851 38.462 37.80 22.29 39.65 1.52
2587 2682 7.519002 CGGACCTATAGCATGCTATTTAAAAC 58.481 38.462 37.80 24.38 39.65 2.43
2588 2683 7.360946 CGGACCTATAGCATGCTATTTAAAACC 60.361 40.741 37.80 28.88 39.65 3.27
2589 2684 7.447238 GGACCTATAGCATGCTATTTAAAACCA 59.553 37.037 37.80 20.37 39.65 3.67
2590 2685 8.940397 ACCTATAGCATGCTATTTAAAACCAT 57.060 30.769 37.80 19.01 39.65 3.55
2591 2686 8.796475 ACCTATAGCATGCTATTTAAAACCATG 58.204 33.333 37.80 19.86 39.65 3.66
2592 2687 9.013229 CCTATAGCATGCTATTTAAAACCATGA 57.987 33.333 37.80 18.66 39.65 3.07
2593 2688 9.831737 CTATAGCATGCTATTTAAAACCATGAC 57.168 33.333 37.80 14.84 39.65 3.06
2612 2707 7.068716 ACCATGACTTTAAATCCAAAGATAGGC 59.931 37.037 0.00 0.00 38.60 3.93
2619 2714 9.578439 CTTTAAATCCAAAGATAGGCAAGAAAG 57.422 33.333 0.00 0.00 37.66 2.62
2625 2720 9.652114 ATCCAAAGATAGGCAAGAAAGATTAAT 57.348 29.630 0.00 0.00 0.00 1.40
2636 2866 9.705290 GGCAAGAAAGATTAATTTTTCCTACAA 57.295 29.630 21.62 0.00 34.60 2.41
2655 2918 9.362151 TCCTACAAACAAATATTTTTCAGGAGT 57.638 29.630 0.00 0.00 0.00 3.85
2694 2957 9.967451 TTCAACCTATACAAGTGGAAATATTCA 57.033 29.630 0.00 0.00 0.00 2.57
3019 3299 5.073428 AGGTCTCTTTCCAACTTTTCATCC 58.927 41.667 0.00 0.00 0.00 3.51
3119 3399 1.971167 GCCGATCCACACCTTTGCA 60.971 57.895 0.00 0.00 0.00 4.08
3153 3449 3.547247 TGCATGGGCACAAGCAAA 58.453 50.000 17.89 0.00 46.96 3.68
3154 3450 1.069427 TGCATGGGCACAAGCAAAC 59.931 52.632 17.89 0.00 46.96 2.93
3155 3451 1.368579 GCATGGGCACAAGCAAACT 59.631 52.632 12.07 0.00 44.61 2.66
3156 3452 0.249996 GCATGGGCACAAGCAAACTT 60.250 50.000 12.07 0.00 44.61 2.66
3157 3453 1.787012 CATGGGCACAAGCAAACTTC 58.213 50.000 0.00 0.00 44.61 3.01
3158 3454 0.681175 ATGGGCACAAGCAAACTTCC 59.319 50.000 0.00 0.00 44.61 3.46
3171 3467 3.305064 GCAAACTTCCGCCAGTGAAATTA 60.305 43.478 0.00 0.00 0.00 1.40
3203 3499 9.072375 CATATCTCCTATTTCTGTCACTCACTA 57.928 37.037 0.00 0.00 0.00 2.74
3204 3500 9.821240 ATATCTCCTATTTCTGTCACTCACTAT 57.179 33.333 0.00 0.00 0.00 2.12
3206 3502 7.119387 TCTCCTATTTCTGTCACTCACTATGA 58.881 38.462 0.00 0.00 0.00 2.15
3247 3543 2.433868 TCTTCCGTTCCGTTGAAGAG 57.566 50.000 0.00 0.00 39.52 2.85
3276 3572 4.345854 TGGTATTTTTGTCCCGGCTATTT 58.654 39.130 0.00 0.00 0.00 1.40
3277 3573 4.399934 TGGTATTTTTGTCCCGGCTATTTC 59.600 41.667 0.00 0.00 0.00 2.17
3278 3574 4.399934 GGTATTTTTGTCCCGGCTATTTCA 59.600 41.667 0.00 0.00 0.00 2.69
3280 3576 5.675684 ATTTTTGTCCCGGCTATTTCATT 57.324 34.783 0.00 0.00 0.00 2.57
3287 3593 2.159254 CCCGGCTATTTCATTGGTTGTG 60.159 50.000 0.00 0.00 0.00 3.33
3290 3596 3.096092 GGCTATTTCATTGGTTGTGGGA 58.904 45.455 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.241317 GGTTTAAGTTCCAGTTTTTAAACTAGC 57.759 33.333 7.49 0.00 46.89 3.42
17 18 9.740239 GGGTTTAAGTTCCAGTTTTTAAACTAG 57.260 33.333 7.49 1.44 46.89 2.57
18 19 9.478238 AGGGTTTAAGTTCCAGTTTTTAAACTA 57.522 29.630 7.49 0.00 46.89 2.24
23 24 9.252635 TGTTTAGGGTTTAAGTTCCAGTTTTTA 57.747 29.630 0.00 0.00 0.00 1.52
24 25 8.036575 GTGTTTAGGGTTTAAGTTCCAGTTTTT 58.963 33.333 0.00 0.00 0.00 1.94
25 26 7.398047 AGTGTTTAGGGTTTAAGTTCCAGTTTT 59.602 33.333 0.00 0.00 0.00 2.43
26 27 6.893554 AGTGTTTAGGGTTTAAGTTCCAGTTT 59.106 34.615 0.00 0.00 0.00 2.66
27 28 6.429151 AGTGTTTAGGGTTTAAGTTCCAGTT 58.571 36.000 0.00 0.00 0.00 3.16
28 29 6.009908 AGTGTTTAGGGTTTAAGTTCCAGT 57.990 37.500 0.00 0.00 0.00 4.00
29 30 7.308408 GCTTAGTGTTTAGGGTTTAAGTTCCAG 60.308 40.741 0.00 0.00 0.00 3.86
30 31 6.487668 GCTTAGTGTTTAGGGTTTAAGTTCCA 59.512 38.462 0.00 0.00 0.00 3.53
31 32 6.072286 GGCTTAGTGTTTAGGGTTTAAGTTCC 60.072 42.308 0.00 0.00 0.00 3.62
32 33 6.072286 GGGCTTAGTGTTTAGGGTTTAAGTTC 60.072 42.308 0.00 0.00 0.00 3.01
33 34 5.771666 GGGCTTAGTGTTTAGGGTTTAAGTT 59.228 40.000 0.00 0.00 0.00 2.66
34 35 5.074102 AGGGCTTAGTGTTTAGGGTTTAAGT 59.926 40.000 0.00 0.00 0.00 2.24
35 36 5.567430 AGGGCTTAGTGTTTAGGGTTTAAG 58.433 41.667 0.00 0.00 0.00 1.85
36 37 5.587760 AGGGCTTAGTGTTTAGGGTTTAA 57.412 39.130 0.00 0.00 0.00 1.52
37 38 6.700845 TTAGGGCTTAGTGTTTAGGGTTTA 57.299 37.500 0.00 0.00 0.00 2.01
38 39 5.587760 TTAGGGCTTAGTGTTTAGGGTTT 57.412 39.130 0.00 0.00 0.00 3.27
39 40 5.567430 CTTTAGGGCTTAGTGTTTAGGGTT 58.433 41.667 0.00 0.00 0.00 4.11
40 41 4.567116 GCTTTAGGGCTTAGTGTTTAGGGT 60.567 45.833 0.00 0.00 0.00 4.34
41 42 3.945921 GCTTTAGGGCTTAGTGTTTAGGG 59.054 47.826 0.00 0.00 0.00 3.53
42 43 3.945921 GGCTTTAGGGCTTAGTGTTTAGG 59.054 47.826 0.00 0.00 37.53 2.69
43 44 3.945921 GGGCTTTAGGGCTTAGTGTTTAG 59.054 47.826 0.00 0.00 40.65 1.85
44 45 3.308617 GGGGCTTTAGGGCTTAGTGTTTA 60.309 47.826 0.00 0.00 40.65 2.01
45 46 2.556782 GGGGCTTTAGGGCTTAGTGTTT 60.557 50.000 0.00 0.00 40.65 2.83
46 47 1.005569 GGGGCTTTAGGGCTTAGTGTT 59.994 52.381 0.00 0.00 40.65 3.32
47 48 0.624254 GGGGCTTTAGGGCTTAGTGT 59.376 55.000 0.00 0.00 40.65 3.55
48 49 0.623723 TGGGGCTTTAGGGCTTAGTG 59.376 55.000 0.00 0.00 40.65 2.74
49 50 1.378732 TTGGGGCTTTAGGGCTTAGT 58.621 50.000 0.00 0.00 40.65 2.24
50 51 2.496070 GTTTTGGGGCTTTAGGGCTTAG 59.504 50.000 0.00 0.00 40.65 2.18
51 52 2.531771 GTTTTGGGGCTTTAGGGCTTA 58.468 47.619 0.00 0.00 40.65 3.09
52 53 1.348064 GTTTTGGGGCTTTAGGGCTT 58.652 50.000 0.00 0.00 40.65 4.35
53 54 0.544357 GGTTTTGGGGCTTTAGGGCT 60.544 55.000 0.00 0.00 40.65 5.19
54 55 1.550130 GGGTTTTGGGGCTTTAGGGC 61.550 60.000 0.00 0.00 40.05 5.19
55 56 0.116342 AGGGTTTTGGGGCTTTAGGG 59.884 55.000 0.00 0.00 0.00 3.53
56 57 2.911552 TAGGGTTTTGGGGCTTTAGG 57.088 50.000 0.00 0.00 0.00 2.69
57 58 4.562757 GCTTTTAGGGTTTTGGGGCTTTAG 60.563 45.833 0.00 0.00 0.00 1.85
58 59 3.325425 GCTTTTAGGGTTTTGGGGCTTTA 59.675 43.478 0.00 0.00 0.00 1.85
59 60 2.105821 GCTTTTAGGGTTTTGGGGCTTT 59.894 45.455 0.00 0.00 0.00 3.51
60 61 1.697432 GCTTTTAGGGTTTTGGGGCTT 59.303 47.619 0.00 0.00 0.00 4.35
61 62 1.348064 GCTTTTAGGGTTTTGGGGCT 58.652 50.000 0.00 0.00 0.00 5.19
62 63 1.052617 TGCTTTTAGGGTTTTGGGGC 58.947 50.000 0.00 0.00 0.00 5.80
63 64 2.043227 TGTGCTTTTAGGGTTTTGGGG 58.957 47.619 0.00 0.00 0.00 4.96
64 65 3.323403 TCATGTGCTTTTAGGGTTTTGGG 59.677 43.478 0.00 0.00 0.00 4.12
65 66 4.599047 TCATGTGCTTTTAGGGTTTTGG 57.401 40.909 0.00 0.00 0.00 3.28
66 67 7.495135 AATTTCATGTGCTTTTAGGGTTTTG 57.505 32.000 0.00 0.00 0.00 2.44
67 68 7.013178 CCAAATTTCATGTGCTTTTAGGGTTTT 59.987 33.333 0.00 0.00 0.00 2.43
68 69 6.486320 CCAAATTTCATGTGCTTTTAGGGTTT 59.514 34.615 0.00 0.00 0.00 3.27
69 70 5.997129 CCAAATTTCATGTGCTTTTAGGGTT 59.003 36.000 0.00 0.00 0.00 4.11
70 71 5.071653 ACCAAATTTCATGTGCTTTTAGGGT 59.928 36.000 0.00 0.00 0.00 4.34
71 72 5.409214 CACCAAATTTCATGTGCTTTTAGGG 59.591 40.000 0.00 0.00 0.00 3.53
72 73 5.990996 ACACCAAATTTCATGTGCTTTTAGG 59.009 36.000 10.43 0.00 31.98 2.69
73 74 8.487176 GTTACACCAAATTTCATGTGCTTTTAG 58.513 33.333 12.22 0.00 31.98 1.85
74 75 8.200792 AGTTACACCAAATTTCATGTGCTTTTA 58.799 29.630 12.22 0.00 31.98 1.52
75 76 7.047271 AGTTACACCAAATTTCATGTGCTTTT 58.953 30.769 12.22 0.00 31.98 2.27
76 77 6.581712 AGTTACACCAAATTTCATGTGCTTT 58.418 32.000 12.22 0.00 31.98 3.51
77 78 6.160576 AGTTACACCAAATTTCATGTGCTT 57.839 33.333 12.22 0.00 31.98 3.91
78 79 5.789643 AGTTACACCAAATTTCATGTGCT 57.210 34.783 12.22 8.39 31.98 4.40
79 80 5.177327 CCAAGTTACACCAAATTTCATGTGC 59.823 40.000 12.22 6.78 31.98 4.57
80 81 5.177327 GCCAAGTTACACCAAATTTCATGTG 59.823 40.000 12.22 10.77 34.92 3.21
81 82 5.163364 TGCCAAGTTACACCAAATTTCATGT 60.163 36.000 8.50 8.50 0.00 3.21
82 83 5.295950 TGCCAAGTTACACCAAATTTCATG 58.704 37.500 0.00 0.00 0.00 3.07
83 84 5.543507 TGCCAAGTTACACCAAATTTCAT 57.456 34.783 0.00 0.00 0.00 2.57
84 85 5.344743 TTGCCAAGTTACACCAAATTTCA 57.655 34.783 0.00 0.00 0.00 2.69
85 86 6.670077 TTTTGCCAAGTTACACCAAATTTC 57.330 33.333 0.00 0.00 0.00 2.17
86 87 7.637631 AATTTTGCCAAGTTACACCAAATTT 57.362 28.000 0.00 0.00 0.00 1.82
87 88 7.637631 AAATTTTGCCAAGTTACACCAAATT 57.362 28.000 0.00 0.00 0.00 1.82
88 89 8.916628 ATAAATTTTGCCAAGTTACACCAAAT 57.083 26.923 0.00 0.00 0.00 2.32
89 90 8.738645 AATAAATTTTGCCAAGTTACACCAAA 57.261 26.923 0.00 0.00 0.00 3.28
90 91 8.738645 AAATAAATTTTGCCAAGTTACACCAA 57.261 26.923 0.00 0.00 0.00 3.67
91 92 9.832445 TTAAATAAATTTTGCCAAGTTACACCA 57.168 25.926 0.00 0.00 0.00 4.17
158 159 8.855279 CGTTCATCTTGACAACTTTTAAAACAA 58.145 29.630 0.00 0.00 0.00 2.83
159 160 7.008810 GCGTTCATCTTGACAACTTTTAAAACA 59.991 33.333 0.00 0.00 0.00 2.83
160 161 7.008810 TGCGTTCATCTTGACAACTTTTAAAAC 59.991 33.333 0.00 0.00 0.00 2.43
161 162 7.030165 TGCGTTCATCTTGACAACTTTTAAAA 58.970 30.769 0.00 0.00 0.00 1.52
162 163 6.556212 TGCGTTCATCTTGACAACTTTTAAA 58.444 32.000 0.00 0.00 0.00 1.52
163 164 6.125327 TGCGTTCATCTTGACAACTTTTAA 57.875 33.333 0.00 0.00 0.00 1.52
164 165 5.743026 TGCGTTCATCTTGACAACTTTTA 57.257 34.783 0.00 0.00 0.00 1.52
165 166 4.630894 TGCGTTCATCTTGACAACTTTT 57.369 36.364 0.00 0.00 0.00 2.27
166 167 4.335315 TCTTGCGTTCATCTTGACAACTTT 59.665 37.500 0.00 0.00 0.00 2.66
167 168 3.876914 TCTTGCGTTCATCTTGACAACTT 59.123 39.130 0.00 0.00 0.00 2.66
168 169 3.466836 TCTTGCGTTCATCTTGACAACT 58.533 40.909 0.00 0.00 0.00 3.16
169 170 3.878086 TCTTGCGTTCATCTTGACAAC 57.122 42.857 0.00 0.00 0.00 3.32
170 171 4.786507 CAATCTTGCGTTCATCTTGACAA 58.213 39.130 0.00 0.00 0.00 3.18
171 172 3.365264 GCAATCTTGCGTTCATCTTGACA 60.365 43.478 0.00 0.00 45.11 3.58
172 173 3.166657 GCAATCTTGCGTTCATCTTGAC 58.833 45.455 0.00 0.00 45.11 3.18
173 174 3.476295 GCAATCTTGCGTTCATCTTGA 57.524 42.857 0.00 0.00 45.11 3.02
186 187 5.506317 CGAAAACTTCCACAAGAGCAATCTT 60.506 40.000 0.00 0.00 33.34 2.40
187 188 4.023707 CGAAAACTTCCACAAGAGCAATCT 60.024 41.667 0.00 0.00 33.34 2.40
188 189 4.222114 CGAAAACTTCCACAAGAGCAATC 58.778 43.478 0.00 0.00 33.34 2.67
189 190 3.632145 ACGAAAACTTCCACAAGAGCAAT 59.368 39.130 0.00 0.00 33.34 3.56
190 191 3.013921 ACGAAAACTTCCACAAGAGCAA 58.986 40.909 0.00 0.00 33.34 3.91
191 192 2.612212 GACGAAAACTTCCACAAGAGCA 59.388 45.455 0.00 0.00 33.34 4.26
192 193 2.612212 TGACGAAAACTTCCACAAGAGC 59.388 45.455 0.00 0.00 33.34 4.09
193 194 4.511454 TCATGACGAAAACTTCCACAAGAG 59.489 41.667 0.00 0.00 33.34 2.85
194 195 4.272504 GTCATGACGAAAACTTCCACAAGA 59.727 41.667 10.69 0.00 33.34 3.02
195 196 4.527564 GTCATGACGAAAACTTCCACAAG 58.472 43.478 10.69 0.00 35.50 3.16
196 197 4.545823 GTCATGACGAAAACTTCCACAA 57.454 40.909 10.69 0.00 0.00 3.33
209 210 4.370970 GCATATTTGCGTTCGTCATGACG 61.371 47.826 36.47 36.47 46.62 4.35
210 211 3.029074 GCATATTTGCGTTCGTCATGAC 58.971 45.455 16.21 16.21 39.49 3.06
211 212 3.317744 GCATATTTGCGTTCGTCATGA 57.682 42.857 0.00 0.00 39.49 3.07
254 255 9.923143 TCTGATTTACTCTATCTTTTGAAACGA 57.077 29.630 0.00 0.00 0.00 3.85
304 305 3.583526 AGTCATCCATCCCATCTCTCATG 59.416 47.826 0.00 0.00 0.00 3.07
305 306 3.839490 GAGTCATCCATCCCATCTCTCAT 59.161 47.826 0.00 0.00 0.00 2.90
309 310 3.869140 GCATGAGTCATCCATCCCATCTC 60.869 52.174 1.56 0.00 0.00 2.75
310 311 2.040012 GCATGAGTCATCCATCCCATCT 59.960 50.000 1.56 0.00 0.00 2.90
311 312 2.224695 TGCATGAGTCATCCATCCCATC 60.225 50.000 1.56 0.00 0.00 3.51
312 313 1.778484 TGCATGAGTCATCCATCCCAT 59.222 47.619 1.56 0.00 0.00 4.00
313 314 1.215140 TGCATGAGTCATCCATCCCA 58.785 50.000 1.56 0.00 0.00 4.37
314 315 1.952296 GTTGCATGAGTCATCCATCCC 59.048 52.381 1.56 0.00 0.00 3.85
315 316 2.928334 AGTTGCATGAGTCATCCATCC 58.072 47.619 1.56 0.00 0.00 3.51
397 401 5.327732 AGAAAAGAGATTCTTGCCATCCAA 58.672 37.500 0.00 0.00 36.71 3.53
422 426 8.348285 TGGTTTTGCTGAGCTAATAAATAGTT 57.652 30.769 5.83 0.00 33.87 2.24
485 489 4.012895 GGCACCAACACGCACGAG 62.013 66.667 0.00 0.00 0.00 4.18
509 513 3.518590 ACCGGTTTATGCTTACGAGAAG 58.481 45.455 0.00 0.00 0.00 2.85
613 618 1.767681 GGTCTCAAGCCTCCTGATGAT 59.232 52.381 0.00 0.00 0.00 2.45
614 619 1.198713 GGTCTCAAGCCTCCTGATGA 58.801 55.000 0.00 0.00 0.00 2.92
615 620 1.202330 AGGTCTCAAGCCTCCTGATG 58.798 55.000 0.00 0.00 0.00 3.07
734 744 3.482722 TCGTTTGTCGTATCCTGACTC 57.517 47.619 0.00 0.00 40.80 3.36
735 745 4.082408 TCAATCGTTTGTCGTATCCTGACT 60.082 41.667 6.14 0.00 40.80 3.41
736 746 4.031426 GTCAATCGTTTGTCGTATCCTGAC 59.969 45.833 6.14 0.00 40.80 3.51
737 747 4.171005 GTCAATCGTTTGTCGTATCCTGA 58.829 43.478 6.14 0.00 40.80 3.86
738 748 3.924073 TGTCAATCGTTTGTCGTATCCTG 59.076 43.478 6.14 0.00 40.80 3.86
739 749 4.174009 CTGTCAATCGTTTGTCGTATCCT 58.826 43.478 6.14 0.00 40.80 3.24
751 761 0.108138 GCTACCTGCCTGTCAATCGT 60.108 55.000 0.00 0.00 35.15 3.73
776 796 4.664677 GCGTGCCTCGTGACACCT 62.665 66.667 0.00 0.00 42.13 4.00
854 881 3.884774 TCAGTGGGTGGGGTGCAC 61.885 66.667 8.80 8.80 0.00 4.57
855 882 3.884774 GTCAGTGGGTGGGGTGCA 61.885 66.667 0.00 0.00 0.00 4.57
856 883 3.210012 ATGTCAGTGGGTGGGGTGC 62.210 63.158 0.00 0.00 0.00 5.01
857 884 1.002134 GATGTCAGTGGGTGGGGTG 60.002 63.158 0.00 0.00 0.00 4.61
858 885 1.463214 TGATGTCAGTGGGTGGGGT 60.463 57.895 0.00 0.00 0.00 4.95
859 886 1.002134 GTGATGTCAGTGGGTGGGG 60.002 63.158 0.00 0.00 0.00 4.96
860 887 1.002134 GGTGATGTCAGTGGGTGGG 60.002 63.158 0.00 0.00 0.00 4.61
861 888 1.375908 CGGTGATGTCAGTGGGTGG 60.376 63.158 0.00 0.00 0.00 4.61
862 889 2.034879 GCGGTGATGTCAGTGGGTG 61.035 63.158 0.00 0.00 0.00 4.61
863 890 2.347490 GCGGTGATGTCAGTGGGT 59.653 61.111 0.00 0.00 0.00 4.51
864 891 2.815211 CGCGGTGATGTCAGTGGG 60.815 66.667 0.00 0.00 0.00 4.61
865 892 3.490759 GCGCGGTGATGTCAGTGG 61.491 66.667 8.83 0.00 0.00 4.00
954 981 8.782144 GGGTTATATATAGAGCTACGATGGTAC 58.218 40.741 0.00 0.00 0.00 3.34
955 982 7.658982 CGGGTTATATATAGAGCTACGATGGTA 59.341 40.741 0.00 0.00 0.00 3.25
956 983 6.485984 CGGGTTATATATAGAGCTACGATGGT 59.514 42.308 0.00 0.00 0.00 3.55
957 984 6.072618 CCGGGTTATATATAGAGCTACGATGG 60.073 46.154 0.00 0.00 0.00 3.51
958 985 6.485984 ACCGGGTTATATATAGAGCTACGATG 59.514 42.308 6.32 0.00 0.00 3.84
960 987 5.819379 CACCGGGTTATATATAGAGCTACGA 59.181 44.000 6.32 0.00 0.00 3.43
961 988 5.008415 CCACCGGGTTATATATAGAGCTACG 59.992 48.000 6.32 0.00 0.00 3.51
962 989 6.388435 CCACCGGGTTATATATAGAGCTAC 57.612 45.833 6.32 0.00 0.00 3.58
1029 1069 3.128349 GAGAAGGTCGTTTGTGTTGCTA 58.872 45.455 0.00 0.00 0.00 3.49
1044 1085 6.107901 TGAAGAAAGAGGAGAAAGAGAAGG 57.892 41.667 0.00 0.00 0.00 3.46
1112 1157 6.073711 CGATGAACTGATGATGATCCTCTTTG 60.074 42.308 0.00 0.00 0.00 2.77
1113 1158 5.990386 CGATGAACTGATGATGATCCTCTTT 59.010 40.000 0.00 0.00 0.00 2.52
1115 1160 4.561123 GCGATGAACTGATGATGATCCTCT 60.561 45.833 0.00 0.00 0.00 3.69
1121 1171 3.249986 TGTGCGATGAACTGATGATGA 57.750 42.857 0.00 0.00 0.00 2.92
1122 1172 4.345271 TTTGTGCGATGAACTGATGATG 57.655 40.909 0.00 0.00 0.00 3.07
1137 1187 0.179156 CATGGCTGGTCGATTTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
1140 1190 1.167851 ACACATGGCTGGTCGATTTG 58.832 50.000 0.00 0.00 0.00 2.32
1142 1192 2.290008 TGTTACACATGGCTGGTCGATT 60.290 45.455 0.00 0.00 0.00 3.34
1327 1377 1.330655 ATGGTGACTGGCCGTAGAGG 61.331 60.000 0.00 0.00 44.97 3.69
1654 1706 2.200092 GAGGAGGAGGGCGAGGAT 59.800 66.667 0.00 0.00 0.00 3.24
1663 1715 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1750 1814 2.882137 GCTAGTAGTAGTGCTCTCCTGG 59.118 54.545 6.47 0.00 0.00 4.45
1756 1820 3.304123 CGTCCATGCTAGTAGTAGTGCTC 60.304 52.174 6.47 0.00 0.00 4.26
1759 1823 3.303197 CGTCGTCCATGCTAGTAGTAGTG 60.303 52.174 6.47 0.00 0.00 2.74
1765 1829 1.306148 CCTCGTCGTCCATGCTAGTA 58.694 55.000 0.00 0.00 0.00 1.82
1766 1830 2.005960 GCCTCGTCGTCCATGCTAGT 62.006 60.000 0.00 0.00 0.00 2.57
1767 1831 1.299468 GCCTCGTCGTCCATGCTAG 60.299 63.158 0.00 0.00 0.00 3.42
1768 1832 2.782222 GGCCTCGTCGTCCATGCTA 61.782 63.158 0.00 0.00 0.00 3.49
1790 1854 4.742201 CGACGTGGTGGCCTCCTG 62.742 72.222 23.90 18.01 0.00 3.86
2072 2136 6.540205 ACAAGAACAACAAGAGAAACGTAAC 58.460 36.000 0.00 0.00 0.00 2.50
2188 2272 1.065600 TGCGCAAAAAGCTGTCACC 59.934 52.632 8.16 0.00 42.61 4.02
2198 2282 2.356069 TGACTTACACATGTGCGCAAAA 59.644 40.909 25.68 3.42 0.00 2.44
2276 2368 5.704888 ACAGACGAGAAATCTAGTTCACTG 58.295 41.667 0.00 8.37 31.94 3.66
2285 2377 9.582431 TCGATTAATTAAACAGACGAGAAATCT 57.418 29.630 1.21 0.00 0.00 2.40
2323 2418 4.920376 TCTTTTTCGAAACAGAGGCAAAG 58.080 39.130 20.05 13.63 0.00 2.77
2332 2427 7.605410 ACTAGTTGACTTCTTTTTCGAAACA 57.395 32.000 10.79 2.88 0.00 2.83
2344 2439 2.994578 GGCCGAAGAACTAGTTGACTTC 59.005 50.000 14.14 17.84 36.44 3.01
2360 2455 3.053619 TCTCCTATATATGCAGAGGCCGA 60.054 47.826 0.00 0.00 40.13 5.54
2408 2503 9.515226 GGCATATCCCACTATTTAAAACTATGA 57.485 33.333 0.00 0.00 0.00 2.15
2410 2505 9.740710 GAGGCATATCCCACTATTTAAAACTAT 57.259 33.333 0.00 0.00 34.51 2.12
2411 2506 8.945193 AGAGGCATATCCCACTATTTAAAACTA 58.055 33.333 0.00 0.00 34.51 2.24
2412 2507 7.816411 AGAGGCATATCCCACTATTTAAAACT 58.184 34.615 0.00 0.00 34.51 2.66
2413 2508 8.465273 AAGAGGCATATCCCACTATTTAAAAC 57.535 34.615 0.00 0.00 34.51 2.43
2414 2509 9.793259 CTAAGAGGCATATCCCACTATTTAAAA 57.207 33.333 0.00 0.00 34.51 1.52
2415 2510 7.883311 GCTAAGAGGCATATCCCACTATTTAAA 59.117 37.037 0.00 0.00 34.51 1.52
2416 2511 7.394816 GCTAAGAGGCATATCCCACTATTTAA 58.605 38.462 0.00 0.00 34.51 1.52
2417 2512 6.351033 CGCTAAGAGGCATATCCCACTATTTA 60.351 42.308 0.00 0.00 34.51 1.40
2418 2513 5.569630 CGCTAAGAGGCATATCCCACTATTT 60.570 44.000 0.00 0.00 34.51 1.40
2419 2514 4.081420 CGCTAAGAGGCATATCCCACTATT 60.081 45.833 0.00 0.00 34.51 1.73
2420 2515 3.449018 CGCTAAGAGGCATATCCCACTAT 59.551 47.826 0.00 0.00 34.51 2.12
2421 2516 2.826128 CGCTAAGAGGCATATCCCACTA 59.174 50.000 0.00 0.00 34.51 2.74
2422 2517 1.620819 CGCTAAGAGGCATATCCCACT 59.379 52.381 0.00 0.00 34.51 4.00
2423 2518 1.338200 CCGCTAAGAGGCATATCCCAC 60.338 57.143 0.00 0.00 34.51 4.61
2424 2519 0.976641 CCGCTAAGAGGCATATCCCA 59.023 55.000 0.00 0.00 34.51 4.37
2425 2520 3.842869 CCGCTAAGAGGCATATCCC 57.157 57.895 0.00 0.00 34.51 3.85
2433 2528 3.140225 GAGGTCCGCCGCTAAGAGG 62.140 68.421 0.00 0.00 40.50 3.69
2434 2529 1.668101 AAGAGGTCCGCCGCTAAGAG 61.668 60.000 0.00 0.00 44.34 2.85
2435 2530 1.664321 GAAGAGGTCCGCCGCTAAGA 61.664 60.000 0.00 0.00 44.34 2.10
2436 2531 1.227002 GAAGAGGTCCGCCGCTAAG 60.227 63.158 0.00 0.00 44.34 2.18
2437 2532 0.394762 TAGAAGAGGTCCGCCGCTAA 60.395 55.000 0.00 0.00 44.34 3.09
2438 2533 0.394762 TTAGAAGAGGTCCGCCGCTA 60.395 55.000 0.00 0.00 44.34 4.26
2440 2535 1.082679 GTTTAGAAGAGGTCCGCCGC 61.083 60.000 0.00 0.00 40.50 6.53
2441 2536 0.801067 CGTTTAGAAGAGGTCCGCCG 60.801 60.000 0.00 0.00 40.50 6.46
2442 2537 1.082679 GCGTTTAGAAGAGGTCCGCC 61.083 60.000 0.00 0.00 34.06 6.13
2443 2538 0.108756 AGCGTTTAGAAGAGGTCCGC 60.109 55.000 0.00 0.00 39.91 5.54
2444 2539 3.712091 ATAGCGTTTAGAAGAGGTCCG 57.288 47.619 0.00 0.00 0.00 4.79
2445 2540 4.037684 TGCTATAGCGTTTAGAAGAGGTCC 59.962 45.833 19.55 0.00 45.83 4.46
2446 2541 5.184340 TGCTATAGCGTTTAGAAGAGGTC 57.816 43.478 19.55 0.00 45.83 3.85
2447 2542 5.593679 TTGCTATAGCGTTTAGAAGAGGT 57.406 39.130 19.55 0.00 45.83 3.85
2448 2543 5.107298 GCATTGCTATAGCGTTTAGAAGAGG 60.107 44.000 19.55 3.41 45.83 3.69
2449 2544 5.694006 AGCATTGCTATAGCGTTTAGAAGAG 59.306 40.000 19.55 5.86 45.83 2.85
2450 2545 5.601662 AGCATTGCTATAGCGTTTAGAAGA 58.398 37.500 19.55 0.00 45.83 2.87
2451 2546 5.914085 AGCATTGCTATAGCGTTTAGAAG 57.086 39.130 19.55 5.08 45.83 2.85
2487 2582 9.522804 GGTCTAAACACATGAACAAACATTTTA 57.477 29.630 0.00 0.00 0.00 1.52
2488 2583 8.037758 TGGTCTAAACACATGAACAAACATTTT 58.962 29.630 0.00 0.00 0.00 1.82
2489 2584 7.551585 TGGTCTAAACACATGAACAAACATTT 58.448 30.769 0.00 0.00 0.00 2.32
2490 2585 7.106439 TGGTCTAAACACATGAACAAACATT 57.894 32.000 0.00 0.00 0.00 2.71
2491 2586 6.707440 TGGTCTAAACACATGAACAAACAT 57.293 33.333 0.00 0.00 0.00 2.71
2492 2587 6.516739 TTGGTCTAAACACATGAACAAACA 57.483 33.333 0.00 0.00 34.91 2.83
2493 2588 7.033185 ACTTTGGTCTAAACACATGAACAAAC 58.967 34.615 0.00 0.00 40.89 2.93
2494 2589 7.164230 ACTTTGGTCTAAACACATGAACAAA 57.836 32.000 0.00 0.00 42.70 2.83
2495 2590 6.767524 ACTTTGGTCTAAACACATGAACAA 57.232 33.333 0.00 0.00 35.87 2.83
2496 2591 6.371809 GACTTTGGTCTAAACACATGAACA 57.628 37.500 0.00 0.00 39.24 3.18
2510 2605 6.428159 TGATCTTGAGCTAAAAGACTTTGGTC 59.572 38.462 12.32 5.94 42.41 4.02
2511 2606 6.205658 GTGATCTTGAGCTAAAAGACTTTGGT 59.794 38.462 12.32 0.00 36.52 3.67
2512 2607 6.429385 AGTGATCTTGAGCTAAAAGACTTTGG 59.571 38.462 12.32 0.00 36.52 3.28
2513 2608 7.432350 AGTGATCTTGAGCTAAAAGACTTTG 57.568 36.000 12.32 0.00 36.52 2.77
2514 2609 7.936301 AGAAGTGATCTTGAGCTAAAAGACTTT 59.064 33.333 12.32 0.00 36.52 2.66
2515 2610 7.449247 AGAAGTGATCTTGAGCTAAAAGACTT 58.551 34.615 12.32 11.68 36.52 3.01
2516 2611 7.003402 AGAAGTGATCTTGAGCTAAAAGACT 57.997 36.000 12.32 5.03 36.52 3.24
2517 2612 8.764524 TTAGAAGTGATCTTGAGCTAAAAGAC 57.235 34.615 12.32 8.20 39.71 3.01
2518 2613 9.950496 ATTTAGAAGTGATCTTGAGCTAAAAGA 57.050 29.630 12.43 12.43 39.71 2.52
2519 2614 9.985318 CATTTAGAAGTGATCTTGAGCTAAAAG 57.015 33.333 0.00 2.78 39.71 2.27
2520 2615 8.454106 GCATTTAGAAGTGATCTTGAGCTAAAA 58.546 33.333 0.00 0.00 39.71 1.52
2521 2616 7.826252 AGCATTTAGAAGTGATCTTGAGCTAAA 59.174 33.333 0.00 0.00 39.71 1.85
2522 2617 7.334090 AGCATTTAGAAGTGATCTTGAGCTAA 58.666 34.615 0.00 0.00 39.71 3.09
2523 2618 6.882656 AGCATTTAGAAGTGATCTTGAGCTA 58.117 36.000 0.00 0.00 39.71 3.32
2524 2619 5.743117 AGCATTTAGAAGTGATCTTGAGCT 58.257 37.500 0.00 0.00 39.71 4.09
2525 2620 7.727331 ATAGCATTTAGAAGTGATCTTGAGC 57.273 36.000 0.00 0.00 39.71 4.26
2530 2625 8.997323 GCACATTATAGCATTTAGAAGTGATCT 58.003 33.333 0.00 0.00 42.48 2.75
2531 2626 8.997323 AGCACATTATAGCATTTAGAAGTGATC 58.003 33.333 0.00 0.00 0.00 2.92
2532 2627 8.915057 AGCACATTATAGCATTTAGAAGTGAT 57.085 30.769 0.00 0.00 0.00 3.06
2533 2628 8.206867 AGAGCACATTATAGCATTTAGAAGTGA 58.793 33.333 0.00 0.00 0.00 3.41
2534 2629 8.375608 AGAGCACATTATAGCATTTAGAAGTG 57.624 34.615 0.00 0.00 0.00 3.16
2535 2630 9.703892 CTAGAGCACATTATAGCATTTAGAAGT 57.296 33.333 0.00 0.00 0.00 3.01
2536 2631 8.655092 GCTAGAGCACATTATAGCATTTAGAAG 58.345 37.037 0.00 0.00 40.27 2.85
2537 2632 7.329471 CGCTAGAGCACATTATAGCATTTAGAA 59.671 37.037 1.89 0.00 40.51 2.10
2538 2633 6.808704 CGCTAGAGCACATTATAGCATTTAGA 59.191 38.462 1.89 0.00 40.51 2.10
2539 2634 6.035435 CCGCTAGAGCACATTATAGCATTTAG 59.965 42.308 1.89 0.00 40.51 1.85
2540 2635 5.869344 CCGCTAGAGCACATTATAGCATTTA 59.131 40.000 1.89 0.00 40.51 1.40
2541 2636 4.692625 CCGCTAGAGCACATTATAGCATTT 59.307 41.667 1.89 0.00 40.51 2.32
2542 2637 4.021104 TCCGCTAGAGCACATTATAGCATT 60.021 41.667 1.89 0.00 40.51 3.56
2543 2638 3.511540 TCCGCTAGAGCACATTATAGCAT 59.488 43.478 1.89 0.00 40.51 3.79
2544 2639 2.890945 TCCGCTAGAGCACATTATAGCA 59.109 45.455 1.89 0.00 40.51 3.49
2545 2640 3.246619 GTCCGCTAGAGCACATTATAGC 58.753 50.000 1.89 0.00 42.21 2.97
2546 2641 3.508012 AGGTCCGCTAGAGCACATTATAG 59.492 47.826 1.89 0.00 45.87 1.31
2547 2642 3.497332 AGGTCCGCTAGAGCACATTATA 58.503 45.455 1.89 0.00 45.87 0.98
2548 2643 2.320781 AGGTCCGCTAGAGCACATTAT 58.679 47.619 1.89 0.00 45.87 1.28
2549 2644 1.776662 AGGTCCGCTAGAGCACATTA 58.223 50.000 1.89 0.00 45.87 1.90
2550 2645 1.776662 TAGGTCCGCTAGAGCACATT 58.223 50.000 1.89 0.00 45.87 2.71
2551 2646 2.002505 ATAGGTCCGCTAGAGCACAT 57.997 50.000 1.89 0.00 45.87 3.21
2552 2647 2.505405 CTATAGGTCCGCTAGAGCACA 58.495 52.381 1.89 0.00 45.87 4.57
2553 2648 1.200484 GCTATAGGTCCGCTAGAGCAC 59.800 57.143 9.43 0.00 45.87 4.40
2554 2649 1.202891 TGCTATAGGTCCGCTAGAGCA 60.203 52.381 12.08 12.08 45.57 4.26
2555 2650 1.535833 TGCTATAGGTCCGCTAGAGC 58.464 55.000 7.87 7.87 43.67 4.09
2556 2651 2.159310 GCATGCTATAGGTCCGCTAGAG 60.159 54.545 11.37 0.00 0.00 2.43
2557 2652 1.819288 GCATGCTATAGGTCCGCTAGA 59.181 52.381 11.37 0.00 0.00 2.43
2558 2653 1.821753 AGCATGCTATAGGTCCGCTAG 59.178 52.381 21.21 0.00 0.00 3.42
2559 2654 1.924731 AGCATGCTATAGGTCCGCTA 58.075 50.000 21.21 0.00 0.00 4.26
2560 2655 1.924731 TAGCATGCTATAGGTCCGCT 58.075 50.000 23.52 0.00 0.00 5.52
2561 2656 2.969628 ATAGCATGCTATAGGTCCGC 57.030 50.000 33.73 0.00 37.47 5.54
2562 2657 7.360946 GGTTTTAAATAGCATGCTATAGGTCCG 60.361 40.741 34.51 0.00 38.20 4.79
2563 2658 7.447238 TGGTTTTAAATAGCATGCTATAGGTCC 59.553 37.037 34.51 28.06 38.20 4.46
2564 2659 8.391075 TGGTTTTAAATAGCATGCTATAGGTC 57.609 34.615 34.51 22.47 38.20 3.85
2565 2660 8.796475 CATGGTTTTAAATAGCATGCTATAGGT 58.204 33.333 34.51 25.09 42.41 3.08
2566 2661 9.013229 TCATGGTTTTAAATAGCATGCTATAGG 57.987 33.333 34.51 20.42 46.04 2.57
2567 2662 9.831737 GTCATGGTTTTAAATAGCATGCTATAG 57.168 33.333 34.51 16.52 46.04 1.31
2568 2663 9.573166 AGTCATGGTTTTAAATAGCATGCTATA 57.427 29.630 34.51 20.84 46.04 1.31
2569 2664 8.469309 AGTCATGGTTTTAAATAGCATGCTAT 57.531 30.769 30.43 30.43 46.04 2.97
2570 2665 7.880160 AGTCATGGTTTTAAATAGCATGCTA 57.120 32.000 28.72 28.72 46.04 3.49
2571 2666 6.780457 AGTCATGGTTTTAAATAGCATGCT 57.220 33.333 25.99 25.99 46.04 3.79
2572 2667 7.832503 AAAGTCATGGTTTTAAATAGCATGC 57.167 32.000 23.23 10.51 46.04 4.06
2585 2680 8.971073 CCTATCTTTGGATTTAAAGTCATGGTT 58.029 33.333 0.00 0.00 38.49 3.67
2586 2681 7.068716 GCCTATCTTTGGATTTAAAGTCATGGT 59.931 37.037 0.00 0.00 38.49 3.55
2587 2682 7.068593 TGCCTATCTTTGGATTTAAAGTCATGG 59.931 37.037 0.00 0.00 38.49 3.66
2588 2683 7.999679 TGCCTATCTTTGGATTTAAAGTCATG 58.000 34.615 0.00 0.00 38.49 3.07
2589 2684 8.593945 TTGCCTATCTTTGGATTTAAAGTCAT 57.406 30.769 0.00 0.00 38.49 3.06
2590 2685 7.888021 TCTTGCCTATCTTTGGATTTAAAGTCA 59.112 33.333 0.00 0.00 38.49 3.41
2591 2686 8.281212 TCTTGCCTATCTTTGGATTTAAAGTC 57.719 34.615 0.00 0.00 38.49 3.01
2592 2687 8.650143 TTCTTGCCTATCTTTGGATTTAAAGT 57.350 30.769 0.00 0.00 38.49 2.66
2593 2688 9.578439 CTTTCTTGCCTATCTTTGGATTTAAAG 57.422 33.333 0.00 0.00 38.67 1.85
2609 2704 9.088987 TGTAGGAAAAATTAATCTTTCTTGCCT 57.911 29.630 12.74 6.01 33.06 4.75
2695 2958 1.242989 TCTAGCCGTGCAAAAATGCA 58.757 45.000 0.00 0.00 43.22 3.96
2804 3067 6.055588 GTGTGTTGGTATCTTGGCATATAGT 58.944 40.000 0.00 0.00 0.00 2.12
2846 3109 5.122711 GGATTCCCATGCAATTTTTCACAAG 59.877 40.000 0.00 0.00 0.00 3.16
2849 3112 4.577875 TGGATTCCCATGCAATTTTTCAC 58.422 39.130 0.00 0.00 37.58 3.18
2917 3184 3.731089 CCTCCTGATCTGAGCATCTTTC 58.269 50.000 0.00 0.00 34.92 2.62
3019 3299 1.271543 TGGAAAGGCAGACATGGACAG 60.272 52.381 0.00 0.00 0.00 3.51
3136 3416 1.069427 GTTTGCTTGTGCCCATGCA 59.931 52.632 5.64 5.64 46.45 3.96
3145 3441 0.751643 ACTGGCGGAAGTTTGCTTGT 60.752 50.000 0.00 0.00 34.61 3.16
3146 3442 0.318107 CACTGGCGGAAGTTTGCTTG 60.318 55.000 0.00 0.00 34.61 4.01
3147 3443 0.465460 TCACTGGCGGAAGTTTGCTT 60.465 50.000 0.00 0.00 37.71 3.91
3148 3444 0.465460 TTCACTGGCGGAAGTTTGCT 60.465 50.000 0.00 0.00 0.00 3.91
3149 3445 0.383949 TTTCACTGGCGGAAGTTTGC 59.616 50.000 0.00 0.00 0.00 3.68
3150 3446 3.369546 AATTTCACTGGCGGAAGTTTG 57.630 42.857 0.00 0.00 0.00 2.93
3151 3447 5.523438 TTTAATTTCACTGGCGGAAGTTT 57.477 34.783 0.00 0.00 0.00 2.66
3152 3448 5.523438 TTTTAATTTCACTGGCGGAAGTT 57.477 34.783 0.00 0.00 0.00 2.66
3153 3449 5.523438 TTTTTAATTTCACTGGCGGAAGT 57.477 34.783 0.00 0.00 0.00 3.01
3154 3450 6.155827 TGATTTTTAATTTCACTGGCGGAAG 58.844 36.000 0.00 0.00 0.00 3.46
3155 3451 6.090483 TGATTTTTAATTTCACTGGCGGAA 57.910 33.333 0.00 0.00 0.00 4.30
3156 3452 5.713792 TGATTTTTAATTTCACTGGCGGA 57.286 34.783 0.00 0.00 0.00 5.54
3157 3453 8.137437 AGATATGATTTTTAATTTCACTGGCGG 58.863 33.333 0.00 0.00 0.00 6.13
3158 3454 9.173939 GAGATATGATTTTTAATTTCACTGGCG 57.826 33.333 0.00 0.00 0.00 5.69
3203 3499 2.961526 ACCGCTGATAAACGACTCAT 57.038 45.000 0.00 0.00 0.00 2.90
3204 3500 4.380841 AATACCGCTGATAAACGACTCA 57.619 40.909 0.00 0.00 0.00 3.41
3206 3502 5.873164 AGAAAAATACCGCTGATAAACGACT 59.127 36.000 0.00 0.00 0.00 4.18
3207 3503 6.103222 AGAAAAATACCGCTGATAAACGAC 57.897 37.500 0.00 0.00 0.00 4.34
3208 3504 6.183360 GGAAGAAAAATACCGCTGATAAACGA 60.183 38.462 0.00 0.00 0.00 3.85
3209 3505 5.963586 GGAAGAAAAATACCGCTGATAAACG 59.036 40.000 0.00 0.00 0.00 3.60
3210 3506 5.963586 CGGAAGAAAAATACCGCTGATAAAC 59.036 40.000 0.00 0.00 38.98 2.01
3212 3508 5.728351 CGGAAGAAAAATACCGCTGATAA 57.272 39.130 0.00 0.00 38.98 1.75
3247 3543 1.533129 GGACAAAAATACCATCGGCGC 60.533 52.381 0.00 0.00 0.00 6.53
3276 3572 1.265236 GCCATTCCCACAACCAATGA 58.735 50.000 0.00 0.00 30.31 2.57
3277 3573 0.975135 TGCCATTCCCACAACCAATG 59.025 50.000 0.00 0.00 0.00 2.82
3278 3574 1.955451 ATGCCATTCCCACAACCAAT 58.045 45.000 0.00 0.00 0.00 3.16
3280 3576 2.844654 ATATGCCATTCCCACAACCA 57.155 45.000 0.00 0.00 0.00 3.67
3287 3593 2.615493 CGTGGAGGTATATGCCATTCCC 60.615 54.545 12.79 7.90 33.66 3.97
3290 3596 1.351017 CCCGTGGAGGTATATGCCATT 59.649 52.381 12.79 0.00 38.74 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.