Multiple sequence alignment - TraesCS1D01G042400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G042400 chr1D 100.000 6799 0 0 1 6799 20952202 20945404 0.000000e+00 12556.0
1 TraesCS1D01G042400 chr1D 79.945 733 122 20 3640 4366 7019624 7020337 3.640000e-142 516.0
2 TraesCS1D01G042400 chr1D 78.938 584 91 20 5098 5655 7021778 7022355 1.080000e-97 368.0
3 TraesCS1D01G042400 chr1D 84.097 371 47 12 2649 3011 7018978 7019344 1.400000e-91 348.0
4 TraesCS1D01G042400 chr1D 81.111 450 66 15 4102 4542 30083389 30082950 6.530000e-90 342.0
5 TraesCS1D01G042400 chr1D 79.817 327 60 5 5372 5693 7345055 7345380 4.100000e-57 233.0
6 TraesCS1D01G042400 chr1D 95.122 82 3 1 4 84 468281429 468281510 1.990000e-25 128.0
7 TraesCS1D01G042400 chr1D 76.471 170 22 14 2536 2696 20949507 20949667 7.310000e-10 76.8
8 TraesCS1D01G042400 chr4D 98.131 3264 12 16 3556 6798 73350787 73347552 0.000000e+00 5644.0
9 TraesCS1D01G042400 chr4D 98.742 2225 21 3 1343 3561 73366876 73364653 0.000000e+00 3947.0
10 TraesCS1D01G042400 chr4D 88.292 726 52 20 4759 5484 73249934 73249242 0.000000e+00 839.0
11 TraesCS1D01G042400 chr4D 81.791 994 120 37 373 1342 73367894 73366938 0.000000e+00 776.0
12 TraesCS1D01G042400 chr4D 89.328 506 35 3 5534 6029 73248550 73248054 9.690000e-173 617.0
13 TraesCS1D01G042400 chr4D 82.233 636 79 15 6039 6654 73245974 73245353 1.010000e-142 518.0
14 TraesCS1D01G042400 chr4D 89.623 106 7 3 2308 2410 241302044 241302148 1.540000e-26 132.0
15 TraesCS1D01G042400 chr4D 100.000 38 0 0 2536 2573 73365519 73365556 3.400000e-08 71.3
16 TraesCS1D01G042400 chr1B 94.944 2591 91 13 2292 4862 34254912 34252342 0.000000e+00 4023.0
17 TraesCS1D01G042400 chr1B 87.846 1193 63 29 5227 6373 34252166 34251010 0.000000e+00 1325.0
18 TraesCS1D01G042400 chr1B 94.872 546 24 3 1721 2265 34255453 34254911 0.000000e+00 850.0
19 TraesCS1D01G042400 chr1B 87.957 465 27 11 895 1343 34256236 34255785 7.810000e-144 521.0
20 TraesCS1D01G042400 chr1B 84.911 338 43 6 6383 6713 34237112 34236776 1.090000e-87 335.0
21 TraesCS1D01G042400 chr1B 93.162 117 7 1 4876 4992 34252279 34252164 3.260000e-38 171.0
22 TraesCS1D01G042400 chr1B 97.015 67 2 0 1347 1413 34255719 34255653 5.570000e-21 113.0
23 TraesCS1D01G042400 chr1B 89.130 92 9 1 1126 1216 47636818 47636727 5.570000e-21 113.0
24 TraesCS1D01G042400 chr1B 100.000 38 0 0 2536 2573 34254506 34254543 3.400000e-08 71.3
25 TraesCS1D01G042400 chr5D 79.181 1124 190 28 3401 4500 8051150 8050047 0.000000e+00 739.0
26 TraesCS1D01G042400 chr5D 76.995 852 149 28 3180 4002 8409499 8410332 1.740000e-120 444.0
27 TraesCS1D01G042400 chr5D 76.134 838 139 39 4064 4862 8260851 8261666 3.850000e-102 383.0
28 TraesCS1D01G042400 chr5D 81.667 480 66 15 1588 2054 8053011 8052541 4.980000e-101 379.0
29 TraesCS1D01G042400 chr5D 82.750 400 54 12 5290 5682 8048723 8048332 6.530000e-90 342.0
30 TraesCS1D01G042400 chr5D 82.108 408 55 11 5282 5677 8411443 8411844 3.930000e-87 333.0
31 TraesCS1D01G042400 chr5D 85.284 299 31 10 2142 2438 8052518 8052231 5.160000e-76 296.0
32 TraesCS1D01G042400 chr5D 88.306 248 21 6 4136 4376 8410375 8410621 2.400000e-74 291.0
33 TraesCS1D01G042400 chr5D 79.902 408 66 10 5291 5686 8414829 8414426 1.120000e-72 285.0
34 TraesCS1D01G042400 chr5D 75.545 642 111 26 3401 4003 8260211 8260845 2.420000e-69 274.0
35 TraesCS1D01G042400 chr5D 81.250 320 32 19 965 1265 8406720 8407030 4.100000e-57 233.0
36 TraesCS1D01G042400 chr5D 82.206 281 36 12 965 1234 8046166 8045889 5.300000e-56 230.0
37 TraesCS1D01G042400 chr5D 81.159 276 38 11 1540 1810 8407247 8407513 6.910000e-50 209.0
38 TraesCS1D01G042400 chr5D 89.344 122 9 4 5742 5859 7630576 7630455 4.250000e-32 150.0
39 TraesCS1D01G042400 chr5D 88.618 123 14 0 4740 4862 8049252 8049130 4.250000e-32 150.0
40 TraesCS1D01G042400 chr5A 79.575 989 157 31 3361 4336 6434825 6433869 0.000000e+00 665.0
41 TraesCS1D01G042400 chr5A 79.588 970 160 26 3401 4364 6447182 6446245 0.000000e+00 660.0
42 TraesCS1D01G042400 chr5A 78.776 1013 167 33 3367 4364 6441013 6440034 2.670000e-178 636.0
43 TraesCS1D01G042400 chr5A 77.022 853 147 29 3180 4002 6617687 6618520 1.740000e-120 444.0
44 TraesCS1D01G042400 chr5A 83.663 404 45 16 2648 3035 6448092 6447694 1.800000e-95 361.0
45 TraesCS1D01G042400 chr5A 80.833 480 69 16 1588 2054 6449058 6448589 8.390000e-94 355.0
46 TraesCS1D01G042400 chr5A 77.931 580 92 28 5125 5682 6439473 6438908 5.080000e-86 329.0
47 TraesCS1D01G042400 chr5A 77.931 580 92 28 5125 5682 6445684 6445119 5.080000e-86 329.0
48 TraesCS1D01G042400 chr5A 81.250 416 60 14 5282 5685 6619630 6620039 3.060000e-83 320.0
49 TraesCS1D01G042400 chr5A 75.585 598 105 25 3401 3963 6485084 6484493 2.430000e-64 257.0
50 TraesCS1D01G042400 chr5A 82.781 302 34 13 2142 2438 6448566 6448278 3.150000e-63 254.0
51 TraesCS1D01G042400 chr5A 80.573 314 34 17 970 1263 6614932 6615238 4.130000e-52 217.0
52 TraesCS1D01G042400 chr5A 87.705 122 15 0 4740 4861 6433482 6433361 7.110000e-30 143.0
53 TraesCS1D01G042400 chr5A 89.091 110 10 1 2292 2401 6436225 6436118 1.190000e-27 135.0
54 TraesCS1D01G042400 chr5A 86.179 123 17 0 4740 4862 6439824 6439702 4.280000e-27 134.0
55 TraesCS1D01G042400 chr5A 86.179 123 17 0 4740 4862 6446035 6445913 4.280000e-27 134.0
56 TraesCS1D01G042400 chr5A 88.182 110 11 1 2292 2401 6442431 6442324 5.530000e-26 130.0
57 TraesCS1D01G042400 chr5B 79.234 992 143 32 3395 4337 652934446 652935423 3.460000e-177 632.0
58 TraesCS1D01G042400 chr5B 83.617 470 67 6 3886 4350 8376320 8375856 3.770000e-117 433.0
59 TraesCS1D01G042400 chr5B 77.809 712 120 23 3242 3931 8527463 8528158 8.210000e-109 405.0
60 TraesCS1D01G042400 chr5B 82.143 476 62 16 1588 2050 8378844 8378379 2.970000e-103 387.0
61 TraesCS1D01G042400 chr5B 75.786 859 139 43 3180 4002 653007962 653007137 3.000000e-98 370.0
62 TraesCS1D01G042400 chr5B 79.283 502 91 11 3401 3897 8376831 8376338 8.450000e-89 339.0
63 TraesCS1D01G042400 chr5B 81.928 415 58 10 5282 5685 653006083 653005675 1.090000e-87 335.0
64 TraesCS1D01G042400 chr5B 75.870 460 99 11 1577 2032 653010281 653009830 2.470000e-54 224.0
65 TraesCS1D01G042400 chr5B 82.449 245 36 6 1571 1810 8524424 8524666 2.490000e-49 207.0
66 TraesCS1D01G042400 chr5B 79.856 278 44 5 2222 2498 655302333 655302599 6.960000e-45 193.0
67 TraesCS1D01G042400 chr1A 79.515 454 71 17 4099 4542 30141599 30141158 3.080000e-78 303.0
68 TraesCS1D01G042400 chr1A 80.235 425 55 21 4099 4514 30011964 30012368 6.670000e-75 292.0
69 TraesCS1D01G042400 chr1A 91.209 91 8 0 1 91 29907346 29907436 2.570000e-24 124.0
70 TraesCS1D01G042400 chr7D 78.750 320 54 9 1578 1892 123360601 123360291 1.160000e-47 202.0
71 TraesCS1D01G042400 chr7D 97.368 76 2 0 4 79 573576408 573576333 5.530000e-26 130.0
72 TraesCS1D01G042400 chr7D 95.122 82 2 2 4 84 593838460 593838380 1.990000e-25 128.0
73 TraesCS1D01G042400 chr2D 79.577 284 43 12 1578 1854 612720892 612721167 9.000000e-44 189.0
74 TraesCS1D01G042400 chrUn 98.649 74 1 0 4 77 96132810 96132737 1.540000e-26 132.0
75 TraesCS1D01G042400 chr6B 89.623 106 7 3 2308 2410 388133146 388133250 1.540000e-26 132.0
76 TraesCS1D01G042400 chr3D 96.203 79 3 0 1 79 575002097 575002175 5.530000e-26 130.0
77 TraesCS1D01G042400 chr3D 97.403 77 1 1 4 80 583260927 583260852 5.530000e-26 130.0
78 TraesCS1D01G042400 chr3D 95.122 82 3 1 4 85 598491122 598491042 1.990000e-25 128.0
79 TraesCS1D01G042400 chr6A 95.062 81 4 0 4 84 2618827 2618747 1.990000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G042400 chr1D 20945404 20952202 6798 True 12556.000000 12556 100.000000 1 6799 1 chr1D.!!$R1 6798
1 TraesCS1D01G042400 chr1D 7018978 7022355 3377 False 410.666667 516 80.993333 2649 5655 3 chr1D.!!$F4 3006
2 TraesCS1D01G042400 chr4D 73347552 73350787 3235 True 5644.000000 5644 98.131000 3556 6798 1 chr4D.!!$R1 3242
3 TraesCS1D01G042400 chr4D 73364653 73367894 3241 True 2361.500000 3947 90.266500 373 3561 2 chr4D.!!$R3 3188
4 TraesCS1D01G042400 chr4D 73245353 73249934 4581 True 658.000000 839 86.617667 4759 6654 3 chr4D.!!$R2 1895
5 TraesCS1D01G042400 chr1B 34251010 34256236 5226 True 1167.166667 4023 92.632667 895 6373 6 chr1B.!!$R3 5478
6 TraesCS1D01G042400 chr5D 8045889 8053011 7122 True 356.000000 739 83.284333 965 5682 6 chr5D.!!$R3 4717
7 TraesCS1D01G042400 chr5D 8260211 8261666 1455 False 328.500000 383 75.839500 3401 4862 2 chr5D.!!$F1 1461
8 TraesCS1D01G042400 chr5D 8406720 8411844 5124 False 302.000000 444 81.963600 965 5677 5 chr5D.!!$F2 4712
9 TraesCS1D01G042400 chr5A 6433361 6449058 15697 True 328.076923 665 82.954923 1588 5682 13 chr5A.!!$R2 4094
10 TraesCS1D01G042400 chr5A 6614932 6620039 5107 False 327.000000 444 79.615000 970 5685 3 chr5A.!!$F1 4715
11 TraesCS1D01G042400 chr5A 6484493 6485084 591 True 257.000000 257 75.585000 3401 3963 1 chr5A.!!$R1 562
12 TraesCS1D01G042400 chr5B 652934446 652935423 977 False 632.000000 632 79.234000 3395 4337 1 chr5B.!!$F1 942
13 TraesCS1D01G042400 chr5B 8375856 8378844 2988 True 386.333333 433 81.681000 1588 4350 3 chr5B.!!$R1 2762
14 TraesCS1D01G042400 chr5B 653005675 653010281 4606 True 309.666667 370 77.861333 1577 5685 3 chr5B.!!$R2 4108
15 TraesCS1D01G042400 chr5B 8524424 8528158 3734 False 306.000000 405 80.129000 1571 3931 2 chr5B.!!$F3 2360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.034477 AAACCGGGACTAATGGGCTG 60.034 55.000 6.32 0.0 0.00 4.85 F
502 504 0.034896 GGAGTGACTCGCTGGGAAAA 59.965 55.000 6.50 0.0 0.00 2.29 F
1289 1350 0.095935 CAACTCTCCATTTGCTCGCG 59.904 55.000 0.00 0.0 0.00 5.87 F
1584 1728 2.289444 GCTGCAGTACTGGGTTCTTGTA 60.289 50.000 23.95 0.0 0.00 2.41 F
1631 1781 5.244626 CCCCTTTTCTGTGTGAAATTCAGAT 59.755 40.000 0.00 0.0 43.34 2.90 F
1909 2102 5.805994 GTGTCTTAATGCTAGAGTTTACGCT 59.194 40.000 0.00 0.0 0.00 5.07 F
3314 6026 6.096705 TCTGAAAAATCAGTTGAAGCAAAGGA 59.903 34.615 5.80 0.0 38.75 3.36 F
5108 15695 5.720202 CCAAAGCTAGGGGTAACAAAAATC 58.280 41.667 0.00 0.0 39.74 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1291 0.930726 GAGAGAGAGGGAGAGGGGAA 59.069 60.000 0.00 0.0 0.00 3.97 R
1631 1781 1.003118 ACGTCCAGCTCCTTTGCAATA 59.997 47.619 0.00 0.0 34.99 1.90 R
2309 3445 3.215151 TCACTCCTATGAGACGGCTAAG 58.785 50.000 0.00 0.0 41.42 2.18 R
3425 6254 0.393820 AACAATGTTGGGCTGGCAAG 59.606 50.000 0.00 0.0 0.00 4.01 R
3428 6257 1.202348 GAGTAACAATGTTGGGCTGGC 59.798 52.381 9.15 0.0 0.00 4.85 R
3900 6800 7.012610 AGCACAGCATTTTATTTTTCTTTTGCT 59.987 29.630 0.00 0.0 39.61 3.91 R
5239 15832 1.066908 CCAGCGGTGTGTCATTTGTTT 59.933 47.619 14.40 0.0 0.00 2.83 R
6240 19676 1.745232 ACAGTGTCCACGCAAAAGAA 58.255 45.000 0.00 0.0 36.20 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.887957 TGATCCCGGTTCTGGACT 57.112 55.556 0.00 0.00 33.94 3.85
19 20 2.241281 TGATCCCGGTTCTGGACTAA 57.759 50.000 0.00 0.00 33.94 2.24
20 21 2.542550 TGATCCCGGTTCTGGACTAAA 58.457 47.619 0.00 0.00 33.94 1.85
21 22 2.235402 TGATCCCGGTTCTGGACTAAAC 59.765 50.000 0.00 0.00 33.94 2.01
22 23 0.978907 TCCCGGTTCTGGACTAAACC 59.021 55.000 0.00 0.00 41.28 3.27
25 26 3.545724 GGTTCTGGACTAAACCGGG 57.454 57.895 6.32 0.00 35.93 5.73
26 27 0.978907 GGTTCTGGACTAAACCGGGA 59.021 55.000 6.32 0.00 35.93 5.14
27 28 1.338484 GGTTCTGGACTAAACCGGGAC 60.338 57.143 6.32 0.00 42.48 4.46
28 29 1.622312 GTTCTGGACTAAACCGGGACT 59.378 52.381 6.32 0.00 40.62 3.85
29 30 2.827921 GTTCTGGACTAAACCGGGACTA 59.172 50.000 6.32 0.00 40.62 2.59
30 31 3.173953 TCTGGACTAAACCGGGACTAA 57.826 47.619 6.32 0.00 36.97 2.24
31 32 3.716431 TCTGGACTAAACCGGGACTAAT 58.284 45.455 6.32 0.00 36.97 1.73
32 33 3.449737 TCTGGACTAAACCGGGACTAATG 59.550 47.826 6.32 0.00 36.97 1.90
33 34 2.502538 TGGACTAAACCGGGACTAATGG 59.497 50.000 6.32 0.00 0.00 3.16
34 35 2.158856 GGACTAAACCGGGACTAATGGG 60.159 54.545 6.32 0.00 0.00 4.00
35 36 1.211212 ACTAAACCGGGACTAATGGGC 59.789 52.381 6.32 0.00 0.00 5.36
36 37 1.489230 CTAAACCGGGACTAATGGGCT 59.511 52.381 6.32 0.00 0.00 5.19
37 38 0.034477 AAACCGGGACTAATGGGCTG 60.034 55.000 6.32 0.00 0.00 4.85
38 39 0.912487 AACCGGGACTAATGGGCTGA 60.912 55.000 6.32 0.00 0.00 4.26
39 40 1.146263 CCGGGACTAATGGGCTGAC 59.854 63.158 0.00 0.00 0.00 3.51
40 41 1.146263 CGGGACTAATGGGCTGACC 59.854 63.158 0.00 0.00 40.81 4.02
52 53 3.636231 CTGACCCGGCCTGAACCA 61.636 66.667 0.00 0.00 0.00 3.67
53 54 3.172106 TGACCCGGCCTGAACCAA 61.172 61.111 0.00 0.00 0.00 3.67
54 55 2.114411 GACCCGGCCTGAACCAAA 59.886 61.111 0.00 0.00 0.00 3.28
55 56 1.971695 GACCCGGCCTGAACCAAAG 60.972 63.158 0.00 0.00 0.00 2.77
56 57 3.373565 CCCGGCCTGAACCAAAGC 61.374 66.667 0.00 0.00 0.00 3.51
57 58 3.373565 CCGGCCTGAACCAAAGCC 61.374 66.667 0.00 0.00 42.18 4.35
58 59 3.373565 CGGCCTGAACCAAAGCCC 61.374 66.667 0.00 0.00 42.66 5.19
59 60 2.118294 GGCCTGAACCAAAGCCCT 59.882 61.111 0.00 0.00 39.60 5.19
60 61 1.979155 GGCCTGAACCAAAGCCCTC 60.979 63.158 0.00 0.00 39.60 4.30
61 62 1.075659 GCCTGAACCAAAGCCCTCT 59.924 57.895 0.00 0.00 0.00 3.69
62 63 0.540597 GCCTGAACCAAAGCCCTCTT 60.541 55.000 0.00 0.00 0.00 2.85
63 64 2.001076 CCTGAACCAAAGCCCTCTTT 57.999 50.000 0.00 0.00 42.92 2.52
64 65 2.319844 CCTGAACCAAAGCCCTCTTTT 58.680 47.619 0.00 0.00 40.35 2.27
65 66 2.297315 CCTGAACCAAAGCCCTCTTTTC 59.703 50.000 0.00 0.00 40.35 2.29
66 67 3.225940 CTGAACCAAAGCCCTCTTTTCT 58.774 45.455 0.00 0.00 40.35 2.52
67 68 4.398319 CTGAACCAAAGCCCTCTTTTCTA 58.602 43.478 0.00 0.00 40.35 2.10
68 69 4.142038 TGAACCAAAGCCCTCTTTTCTAC 58.858 43.478 0.00 0.00 40.35 2.59
69 70 4.141251 TGAACCAAAGCCCTCTTTTCTACT 60.141 41.667 0.00 0.00 40.35 2.57
70 71 5.072600 TGAACCAAAGCCCTCTTTTCTACTA 59.927 40.000 0.00 0.00 40.35 1.82
71 72 5.167303 ACCAAAGCCCTCTTTTCTACTAG 57.833 43.478 0.00 0.00 40.35 2.57
72 73 4.597940 ACCAAAGCCCTCTTTTCTACTAGT 59.402 41.667 0.00 0.00 40.35 2.57
73 74 4.938226 CCAAAGCCCTCTTTTCTACTAGTG 59.062 45.833 5.39 0.00 40.35 2.74
74 75 3.897141 AGCCCTCTTTTCTACTAGTGC 57.103 47.619 5.39 0.00 0.00 4.40
75 76 2.502130 AGCCCTCTTTTCTACTAGTGCC 59.498 50.000 5.39 0.00 0.00 5.01
76 77 2.502130 GCCCTCTTTTCTACTAGTGCCT 59.498 50.000 5.39 0.00 0.00 4.75
77 78 3.431068 GCCCTCTTTTCTACTAGTGCCTC 60.431 52.174 5.39 0.00 0.00 4.70
78 79 3.181485 CCCTCTTTTCTACTAGTGCCTCG 60.181 52.174 5.39 0.00 0.00 4.63
79 80 3.444388 CCTCTTTTCTACTAGTGCCTCGT 59.556 47.826 5.39 0.00 0.00 4.18
80 81 4.439016 CCTCTTTTCTACTAGTGCCTCGTC 60.439 50.000 5.39 0.00 0.00 4.20
81 82 4.077108 TCTTTTCTACTAGTGCCTCGTCA 58.923 43.478 5.39 0.00 0.00 4.35
82 83 3.844577 TTTCTACTAGTGCCTCGTCAC 57.155 47.619 5.39 0.00 37.24 3.67
83 84 1.747709 TCTACTAGTGCCTCGTCACC 58.252 55.000 5.39 0.00 37.68 4.02
84 85 0.377554 CTACTAGTGCCTCGTCACCG 59.622 60.000 5.39 0.00 37.68 4.94
85 86 1.028330 TACTAGTGCCTCGTCACCGG 61.028 60.000 5.39 0.00 37.68 5.28
86 87 2.034532 TAGTGCCTCGTCACCGGA 59.965 61.111 9.46 0.00 37.68 5.14
87 88 1.379443 TAGTGCCTCGTCACCGGAT 60.379 57.895 9.46 0.00 37.68 4.18
88 89 1.663379 TAGTGCCTCGTCACCGGATG 61.663 60.000 9.46 2.48 37.68 3.51
89 90 4.451150 TGCCTCGTCACCGGATGC 62.451 66.667 9.46 0.00 33.95 3.91
90 91 4.451150 GCCTCGTCACCGGATGCA 62.451 66.667 9.46 0.00 33.95 3.96
91 92 2.202797 CCTCGTCACCGGATGCAG 60.203 66.667 9.46 0.00 33.95 4.41
92 93 2.887568 CTCGTCACCGGATGCAGC 60.888 66.667 9.46 0.00 33.95 5.25
93 94 3.362399 CTCGTCACCGGATGCAGCT 62.362 63.158 9.46 0.00 33.95 4.24
94 95 2.434884 CGTCACCGGATGCAGCTT 60.435 61.111 9.46 0.00 0.00 3.74
95 96 2.456119 CGTCACCGGATGCAGCTTC 61.456 63.158 9.46 0.00 0.00 3.86
96 97 2.109126 GTCACCGGATGCAGCTTCC 61.109 63.158 9.46 16.05 0.00 3.46
101 102 2.125512 GGATGCAGCTTCCGTCGT 60.126 61.111 11.44 0.00 0.00 4.34
102 103 1.741770 GGATGCAGCTTCCGTCGTT 60.742 57.895 11.44 0.00 0.00 3.85
103 104 0.459585 GGATGCAGCTTCCGTCGTTA 60.460 55.000 11.44 0.00 0.00 3.18
104 105 1.355971 GATGCAGCTTCCGTCGTTAA 58.644 50.000 0.00 0.00 0.00 2.01
105 106 1.060698 GATGCAGCTTCCGTCGTTAAC 59.939 52.381 0.00 0.00 0.00 2.01
106 107 0.249531 TGCAGCTTCCGTCGTTAACA 60.250 50.000 6.39 0.00 0.00 2.41
107 108 0.438830 GCAGCTTCCGTCGTTAACAG 59.561 55.000 6.39 0.00 0.00 3.16
108 109 1.779569 CAGCTTCCGTCGTTAACAGT 58.220 50.000 6.39 0.00 0.00 3.55
109 110 2.132762 CAGCTTCCGTCGTTAACAGTT 58.867 47.619 6.39 0.00 0.00 3.16
110 111 2.096909 CAGCTTCCGTCGTTAACAGTTG 60.097 50.000 6.39 0.00 0.00 3.16
111 112 1.862827 GCTTCCGTCGTTAACAGTTGT 59.137 47.619 6.39 0.00 0.00 3.32
112 113 3.052036 GCTTCCGTCGTTAACAGTTGTA 58.948 45.455 6.39 0.00 0.00 2.41
113 114 3.120782 GCTTCCGTCGTTAACAGTTGTAG 59.879 47.826 6.39 0.00 0.00 2.74
114 115 2.664916 TCCGTCGTTAACAGTTGTAGC 58.335 47.619 6.39 0.00 0.00 3.58
115 116 2.034432 TCCGTCGTTAACAGTTGTAGCA 59.966 45.455 6.39 0.00 0.00 3.49
116 117 2.991190 CCGTCGTTAACAGTTGTAGCAT 59.009 45.455 6.39 0.00 0.00 3.79
117 118 3.181534 CCGTCGTTAACAGTTGTAGCATG 60.182 47.826 6.39 0.00 0.00 4.06
118 119 3.181534 CGTCGTTAACAGTTGTAGCATGG 60.182 47.826 6.39 0.00 0.00 3.66
119 120 3.124636 GTCGTTAACAGTTGTAGCATGGG 59.875 47.826 6.39 0.00 0.00 4.00
120 121 2.418628 CGTTAACAGTTGTAGCATGGGG 59.581 50.000 6.39 0.00 0.00 4.96
121 122 3.418047 GTTAACAGTTGTAGCATGGGGT 58.582 45.455 0.00 0.00 0.00 4.95
122 123 2.200373 AACAGTTGTAGCATGGGGTC 57.800 50.000 0.00 0.00 0.00 4.46
123 124 0.328258 ACAGTTGTAGCATGGGGTCC 59.672 55.000 0.00 0.00 0.00 4.46
124 125 0.620556 CAGTTGTAGCATGGGGTCCT 59.379 55.000 0.00 0.00 0.00 3.85
125 126 0.620556 AGTTGTAGCATGGGGTCCTG 59.379 55.000 0.00 0.00 0.00 3.86
126 127 1.032114 GTTGTAGCATGGGGTCCTGC 61.032 60.000 0.00 0.00 38.69 4.85
127 128 2.193248 GTAGCATGGGGTCCTGCC 59.807 66.667 0.00 0.00 39.22 4.85
128 129 2.286045 TAGCATGGGGTCCTGCCA 60.286 61.111 0.00 0.00 39.22 4.92
129 130 1.697394 TAGCATGGGGTCCTGCCAT 60.697 57.895 0.00 0.00 39.22 4.40
130 131 1.708993 TAGCATGGGGTCCTGCCATC 61.709 60.000 0.00 0.00 39.22 3.51
131 132 2.203252 CATGGGGTCCTGCCATCG 60.203 66.667 0.00 0.00 39.65 3.84
132 133 4.195334 ATGGGGTCCTGCCATCGC 62.195 66.667 0.00 0.00 39.65 4.58
141 142 2.515290 TGCCATCGCAGCTCCATG 60.515 61.111 0.00 0.00 41.12 3.66
142 143 3.285215 GCCATCGCAGCTCCATGG 61.285 66.667 4.97 4.97 40.24 3.66
143 144 3.285215 CCATCGCAGCTCCATGGC 61.285 66.667 6.96 0.00 30.94 4.40
144 145 3.285215 CATCGCAGCTCCATGGCC 61.285 66.667 6.96 0.00 0.00 5.36
145 146 4.923942 ATCGCAGCTCCATGGCCG 62.924 66.667 6.96 1.19 0.00 6.13
149 150 4.889112 CAGCTCCATGGCCGCCAT 62.889 66.667 19.79 19.79 46.37 4.40
150 151 3.170672 AGCTCCATGGCCGCCATA 61.171 61.111 24.66 9.61 43.15 2.74
151 152 2.670934 GCTCCATGGCCGCCATAG 60.671 66.667 24.66 19.46 43.15 2.23
152 153 2.831770 CTCCATGGCCGCCATAGT 59.168 61.111 24.66 0.58 43.15 2.12
153 154 1.149174 CTCCATGGCCGCCATAGTT 59.851 57.895 24.66 0.16 43.15 2.24
154 155 1.152984 TCCATGGCCGCCATAGTTG 60.153 57.895 24.66 13.80 43.15 3.16
155 156 1.453745 CCATGGCCGCCATAGTTGT 60.454 57.895 24.66 0.00 43.15 3.32
156 157 0.179032 CCATGGCCGCCATAGTTGTA 60.179 55.000 24.66 0.00 43.15 2.41
157 158 1.229428 CATGGCCGCCATAGTTGTAG 58.771 55.000 24.66 6.90 43.15 2.74
158 159 0.535102 ATGGCCGCCATAGTTGTAGC 60.535 55.000 23.93 0.00 43.19 3.58
159 160 1.146263 GGCCGCCATAGTTGTAGCT 59.854 57.895 3.91 0.00 0.00 3.32
160 161 0.880718 GGCCGCCATAGTTGTAGCTC 60.881 60.000 3.91 0.00 0.00 4.09
161 162 0.880718 GCCGCCATAGTTGTAGCTCC 60.881 60.000 0.00 0.00 0.00 4.70
162 163 0.753262 CCGCCATAGTTGTAGCTCCT 59.247 55.000 0.00 0.00 0.00 3.69
163 164 1.269831 CCGCCATAGTTGTAGCTCCTC 60.270 57.143 0.00 0.00 0.00 3.71
164 165 1.269831 CGCCATAGTTGTAGCTCCTCC 60.270 57.143 0.00 0.00 0.00 4.30
165 166 1.269831 GCCATAGTTGTAGCTCCTCCG 60.270 57.143 0.00 0.00 0.00 4.63
166 167 2.032620 CCATAGTTGTAGCTCCTCCGT 58.967 52.381 0.00 0.00 0.00 4.69
167 168 2.223829 CCATAGTTGTAGCTCCTCCGTG 60.224 54.545 0.00 0.00 0.00 4.94
168 169 2.211250 TAGTTGTAGCTCCTCCGTGT 57.789 50.000 0.00 0.00 0.00 4.49
169 170 0.889306 AGTTGTAGCTCCTCCGTGTC 59.111 55.000 0.00 0.00 0.00 3.67
170 171 0.456312 GTTGTAGCTCCTCCGTGTCG 60.456 60.000 0.00 0.00 0.00 4.35
171 172 0.607217 TTGTAGCTCCTCCGTGTCGA 60.607 55.000 0.00 0.00 0.00 4.20
172 173 1.025113 TGTAGCTCCTCCGTGTCGAG 61.025 60.000 0.00 0.00 0.00 4.04
177 178 2.261671 CCTCCGTGTCGAGGGTTG 59.738 66.667 0.00 0.00 45.03 3.77
178 179 2.571216 CCTCCGTGTCGAGGGTTGT 61.571 63.158 0.00 0.00 45.03 3.32
179 180 1.246056 CCTCCGTGTCGAGGGTTGTA 61.246 60.000 0.00 0.00 45.03 2.41
180 181 0.170561 CTCCGTGTCGAGGGTTGTAG 59.829 60.000 0.00 0.00 0.00 2.74
181 182 1.445582 CCGTGTCGAGGGTTGTAGC 60.446 63.158 0.00 0.00 0.00 3.58
182 183 1.445582 CGTGTCGAGGGTTGTAGCC 60.446 63.158 0.00 0.00 35.59 3.93
183 184 1.669440 GTGTCGAGGGTTGTAGCCA 59.331 57.895 0.00 0.00 38.48 4.75
184 185 0.669625 GTGTCGAGGGTTGTAGCCAC 60.670 60.000 0.00 0.00 38.48 5.01
185 186 1.116536 TGTCGAGGGTTGTAGCCACA 61.117 55.000 0.00 0.00 38.48 4.17
186 187 0.249398 GTCGAGGGTTGTAGCCACAT 59.751 55.000 0.00 0.00 38.48 3.21
187 188 0.535335 TCGAGGGTTGTAGCCACATC 59.465 55.000 0.00 0.00 38.48 3.06
188 189 0.537188 CGAGGGTTGTAGCCACATCT 59.463 55.000 0.00 0.00 38.48 2.90
189 190 1.740380 CGAGGGTTGTAGCCACATCTG 60.740 57.143 0.00 0.00 38.48 2.90
190 191 0.620556 AGGGTTGTAGCCACATCTGG 59.379 55.000 0.00 0.00 38.48 3.86
191 192 0.328258 GGGTTGTAGCCACATCTGGT 59.672 55.000 0.00 0.00 40.17 4.00
192 193 1.271926 GGGTTGTAGCCACATCTGGTT 60.272 52.381 0.00 0.00 40.17 3.67
193 194 2.026636 GGGTTGTAGCCACATCTGGTTA 60.027 50.000 0.00 0.00 40.17 2.85
197 198 3.560636 GTAGCCACATCTGGTTACCAT 57.439 47.619 3.88 0.00 44.63 3.55
198 199 2.717639 AGCCACATCTGGTTACCATC 57.282 50.000 3.88 0.00 40.17 3.51
199 200 1.134401 AGCCACATCTGGTTACCATCG 60.134 52.381 3.88 0.00 40.17 3.84
200 201 1.406887 GCCACATCTGGTTACCATCGT 60.407 52.381 3.88 0.00 40.17 3.73
201 202 2.550978 CCACATCTGGTTACCATCGTC 58.449 52.381 3.88 0.00 30.82 4.20
202 203 2.093711 CCACATCTGGTTACCATCGTCA 60.094 50.000 3.88 0.00 30.82 4.35
203 204 2.930040 CACATCTGGTTACCATCGTCAC 59.070 50.000 3.88 0.00 30.82 3.67
204 205 2.093658 ACATCTGGTTACCATCGTCACC 60.094 50.000 3.88 0.00 36.87 4.02
205 206 1.634960 TCTGGTTACCATCGTCACCA 58.365 50.000 3.88 0.00 42.72 4.17
206 207 1.274167 TCTGGTTACCATCGTCACCAC 59.726 52.381 3.88 0.00 40.59 4.16
207 208 1.001520 CTGGTTACCATCGTCACCACA 59.998 52.381 3.88 0.00 40.59 4.17
208 209 1.416772 TGGTTACCATCGTCACCACAA 59.583 47.619 0.00 0.00 40.59 3.33
209 210 2.039216 TGGTTACCATCGTCACCACAAT 59.961 45.455 0.00 0.00 40.59 2.71
210 211 2.676342 GGTTACCATCGTCACCACAATC 59.324 50.000 0.00 0.00 36.43 2.67
211 212 2.676342 GTTACCATCGTCACCACAATCC 59.324 50.000 0.00 0.00 0.00 3.01
212 213 0.690192 ACCATCGTCACCACAATCCA 59.310 50.000 0.00 0.00 0.00 3.41
213 214 1.086696 CCATCGTCACCACAATCCAC 58.913 55.000 0.00 0.00 0.00 4.02
214 215 1.610363 CCATCGTCACCACAATCCACA 60.610 52.381 0.00 0.00 0.00 4.17
215 216 2.358957 CATCGTCACCACAATCCACAT 58.641 47.619 0.00 0.00 0.00 3.21
216 217 1.807139 TCGTCACCACAATCCACATG 58.193 50.000 0.00 0.00 0.00 3.21
217 218 0.804364 CGTCACCACAATCCACATGG 59.196 55.000 0.00 0.00 39.57 3.66
219 220 2.238521 GTCACCACAATCCACATGGTT 58.761 47.619 0.00 0.00 44.51 3.67
220 221 2.030007 GTCACCACAATCCACATGGTTG 60.030 50.000 0.00 5.00 44.51 3.77
221 222 1.962807 CACCACAATCCACATGGTTGT 59.037 47.619 11.00 11.00 44.51 3.32
222 223 2.030007 CACCACAATCCACATGGTTGTC 60.030 50.000 12.90 0.00 44.51 3.18
223 224 2.237643 CCACAATCCACATGGTTGTCA 58.762 47.619 12.90 0.00 37.34 3.58
224 225 2.627221 CCACAATCCACATGGTTGTCAA 59.373 45.455 12.90 0.00 37.34 3.18
225 226 3.552684 CCACAATCCACATGGTTGTCAAC 60.553 47.826 7.20 7.20 37.34 3.18
226 227 3.067883 CACAATCCACATGGTTGTCAACA 59.932 43.478 17.29 4.42 37.34 3.33
227 228 3.896888 ACAATCCACATGGTTGTCAACAT 59.103 39.130 17.29 6.46 35.83 2.71
228 229 5.048154 CACAATCCACATGGTTGTCAACATA 60.048 40.000 17.29 6.24 37.34 2.29
229 230 5.183713 ACAATCCACATGGTTGTCAACATAG 59.816 40.000 17.29 8.22 35.83 2.23
230 231 3.684908 TCCACATGGTTGTCAACATAGG 58.315 45.455 17.29 9.62 32.34 2.57
231 232 3.073798 TCCACATGGTTGTCAACATAGGT 59.926 43.478 17.29 10.21 32.34 3.08
232 233 3.440173 CCACATGGTTGTCAACATAGGTC 59.560 47.826 17.29 0.00 32.34 3.85
233 234 4.071423 CACATGGTTGTCAACATAGGTCA 58.929 43.478 17.29 5.42 32.34 4.02
234 235 4.518590 CACATGGTTGTCAACATAGGTCAA 59.481 41.667 17.29 0.00 32.34 3.18
235 236 5.183713 CACATGGTTGTCAACATAGGTCAAT 59.816 40.000 17.29 0.00 32.34 2.57
236 237 5.183713 ACATGGTTGTCAACATAGGTCAATG 59.816 40.000 17.29 9.20 0.00 2.82
237 238 4.724399 TGGTTGTCAACATAGGTCAATGT 58.276 39.130 17.29 0.00 41.87 2.71
238 239 4.759693 TGGTTGTCAACATAGGTCAATGTC 59.240 41.667 17.29 0.00 39.16 3.06
239 240 4.156008 GGTTGTCAACATAGGTCAATGTCC 59.844 45.833 17.29 0.00 39.16 4.02
240 241 3.950397 TGTCAACATAGGTCAATGTCCC 58.050 45.455 0.00 0.00 39.16 4.46
241 242 3.279434 GTCAACATAGGTCAATGTCCCC 58.721 50.000 0.00 0.00 39.16 4.81
242 243 2.916269 TCAACATAGGTCAATGTCCCCA 59.084 45.455 0.00 0.00 39.16 4.96
243 244 3.054434 TCAACATAGGTCAATGTCCCCAG 60.054 47.826 0.00 0.00 39.16 4.45
244 245 1.212935 ACATAGGTCAATGTCCCCAGC 59.787 52.381 0.00 0.00 35.08 4.85
245 246 0.469917 ATAGGTCAATGTCCCCAGCG 59.530 55.000 0.00 0.00 0.00 5.18
246 247 2.252072 TAGGTCAATGTCCCCAGCGC 62.252 60.000 0.00 0.00 0.00 5.92
247 248 2.045926 GTCAATGTCCCCAGCGCT 60.046 61.111 2.64 2.64 0.00 5.92
248 249 1.220749 GTCAATGTCCCCAGCGCTA 59.779 57.895 10.99 0.00 0.00 4.26
249 250 0.392461 GTCAATGTCCCCAGCGCTAA 60.392 55.000 10.99 0.00 0.00 3.09
250 251 0.392461 TCAATGTCCCCAGCGCTAAC 60.392 55.000 10.99 7.04 0.00 2.34
251 252 0.392998 CAATGTCCCCAGCGCTAACT 60.393 55.000 10.99 0.00 0.00 2.24
252 253 0.107654 AATGTCCCCAGCGCTAACTC 60.108 55.000 10.99 0.30 0.00 3.01
253 254 2.202756 GTCCCCAGCGCTAACTCG 60.203 66.667 10.99 0.00 0.00 4.18
263 264 2.425989 CGCTAACTCGCAACAATCAG 57.574 50.000 0.00 0.00 0.00 2.90
264 265 1.527793 CGCTAACTCGCAACAATCAGC 60.528 52.381 0.00 0.00 0.00 4.26
265 266 1.464608 GCTAACTCGCAACAATCAGCA 59.535 47.619 0.00 0.00 0.00 4.41
266 267 2.475187 GCTAACTCGCAACAATCAGCAG 60.475 50.000 0.00 0.00 0.00 4.24
267 268 0.239347 AACTCGCAACAATCAGCAGC 59.761 50.000 0.00 0.00 0.00 5.25
268 269 0.886043 ACTCGCAACAATCAGCAGCA 60.886 50.000 0.00 0.00 0.00 4.41
269 270 0.450583 CTCGCAACAATCAGCAGCAT 59.549 50.000 0.00 0.00 0.00 3.79
270 271 0.883153 TCGCAACAATCAGCAGCATT 59.117 45.000 0.00 0.00 0.00 3.56
271 272 0.989164 CGCAACAATCAGCAGCATTG 59.011 50.000 4.30 4.30 37.29 2.82
272 273 1.401800 CGCAACAATCAGCAGCATTGA 60.402 47.619 11.47 0.00 35.54 2.57
273 274 2.259618 GCAACAATCAGCAGCATTGAG 58.740 47.619 11.47 5.71 35.54 3.02
274 275 2.876091 CAACAATCAGCAGCATTGAGG 58.124 47.619 11.47 0.00 35.54 3.86
275 276 0.815734 ACAATCAGCAGCATTGAGGC 59.184 50.000 11.47 0.00 35.54 4.70
277 278 1.476891 CAATCAGCAGCATTGAGGCTT 59.523 47.619 0.00 0.00 42.71 4.35
278 279 1.390565 ATCAGCAGCATTGAGGCTTC 58.609 50.000 0.00 0.00 42.71 3.86
279 280 0.679002 TCAGCAGCATTGAGGCTTCC 60.679 55.000 0.00 0.00 42.71 3.46
280 281 1.379576 AGCAGCATTGAGGCTTCCC 60.380 57.895 0.00 0.00 42.71 3.97
281 282 1.379576 GCAGCATTGAGGCTTCCCT 60.380 57.895 0.00 0.00 42.71 4.20
282 283 0.969409 GCAGCATTGAGGCTTCCCTT 60.969 55.000 0.00 0.00 42.71 3.95
283 284 0.815734 CAGCATTGAGGCTTCCCTTG 59.184 55.000 0.00 0.00 42.71 3.61
284 285 0.969409 AGCATTGAGGCTTCCCTTGC 60.969 55.000 6.63 6.63 42.71 4.01
285 286 1.252904 GCATTGAGGCTTCCCTTGCA 61.253 55.000 9.04 0.00 43.12 4.08
286 287 0.815734 CATTGAGGCTTCCCTTGCAG 59.184 55.000 0.00 0.00 43.12 4.41
287 288 0.324091 ATTGAGGCTTCCCTTGCAGG 60.324 55.000 0.00 0.00 43.12 4.85
305 306 1.303282 GGTCACTCCCAATCACCCC 59.697 63.158 0.00 0.00 0.00 4.95
306 307 1.303282 GTCACTCCCAATCACCCCC 59.697 63.158 0.00 0.00 0.00 5.40
307 308 1.163309 TCACTCCCAATCACCCCCT 59.837 57.895 0.00 0.00 0.00 4.79
308 309 0.914417 TCACTCCCAATCACCCCCTC 60.914 60.000 0.00 0.00 0.00 4.30
309 310 1.619669 ACTCCCAATCACCCCCTCC 60.620 63.158 0.00 0.00 0.00 4.30
310 311 1.308216 CTCCCAATCACCCCCTCCT 60.308 63.158 0.00 0.00 0.00 3.69
311 312 1.307866 TCCCAATCACCCCCTCCTC 60.308 63.158 0.00 0.00 0.00 3.71
312 313 1.619363 CCCAATCACCCCCTCCTCA 60.619 63.158 0.00 0.00 0.00 3.86
313 314 0.995675 CCCAATCACCCCCTCCTCAT 60.996 60.000 0.00 0.00 0.00 2.90
314 315 0.475906 CCAATCACCCCCTCCTCATC 59.524 60.000 0.00 0.00 0.00 2.92
315 316 1.516110 CAATCACCCCCTCCTCATCT 58.484 55.000 0.00 0.00 0.00 2.90
316 317 1.849039 CAATCACCCCCTCCTCATCTT 59.151 52.381 0.00 0.00 0.00 2.40
317 318 1.813102 ATCACCCCCTCCTCATCTTC 58.187 55.000 0.00 0.00 0.00 2.87
318 319 0.719015 TCACCCCCTCCTCATCTTCT 59.281 55.000 0.00 0.00 0.00 2.85
319 320 1.127343 CACCCCCTCCTCATCTTCTC 58.873 60.000 0.00 0.00 0.00 2.87
320 321 1.022903 ACCCCCTCCTCATCTTCTCT 58.977 55.000 0.00 0.00 0.00 3.10
321 322 1.343884 ACCCCCTCCTCATCTTCTCTG 60.344 57.143 0.00 0.00 0.00 3.35
322 323 0.758123 CCCCTCCTCATCTTCTCTGC 59.242 60.000 0.00 0.00 0.00 4.26
323 324 1.493861 CCCTCCTCATCTTCTCTGCA 58.506 55.000 0.00 0.00 0.00 4.41
324 325 2.048601 CCCTCCTCATCTTCTCTGCAT 58.951 52.381 0.00 0.00 0.00 3.96
325 326 2.037511 CCCTCCTCATCTTCTCTGCATC 59.962 54.545 0.00 0.00 0.00 3.91
326 327 2.699321 CCTCCTCATCTTCTCTGCATCA 59.301 50.000 0.00 0.00 0.00 3.07
327 328 3.243941 CCTCCTCATCTTCTCTGCATCAG 60.244 52.174 0.00 0.00 0.00 2.90
328 329 2.102757 TCCTCATCTTCTCTGCATCAGC 59.897 50.000 0.00 0.00 42.57 4.26
329 330 2.128821 CTCATCTTCTCTGCATCAGCG 58.871 52.381 0.00 0.00 46.23 5.18
330 331 1.479730 TCATCTTCTCTGCATCAGCGT 59.520 47.619 0.00 0.00 46.23 5.07
331 332 1.859703 CATCTTCTCTGCATCAGCGTC 59.140 52.381 0.00 0.00 46.23 5.19
332 333 0.179153 TCTTCTCTGCATCAGCGTCG 60.179 55.000 0.00 0.00 46.23 5.12
333 334 1.144565 CTTCTCTGCATCAGCGTCGG 61.145 60.000 0.00 0.00 46.23 4.79
334 335 1.877576 TTCTCTGCATCAGCGTCGGT 61.878 55.000 0.00 0.00 46.23 4.69
335 336 2.125952 TCTGCATCAGCGTCGGTG 60.126 61.111 18.12 18.12 46.23 4.94
336 337 2.433145 CTGCATCAGCGTCGGTGT 60.433 61.111 22.58 8.73 46.23 4.16
337 338 1.153842 CTGCATCAGCGTCGGTGTA 60.154 57.895 22.58 10.97 46.23 2.90
338 339 1.142185 CTGCATCAGCGTCGGTGTAG 61.142 60.000 22.58 16.83 46.23 2.74
339 340 2.517450 GCATCAGCGTCGGTGTAGC 61.517 63.158 22.58 21.68 32.43 3.58
340 341 1.139734 CATCAGCGTCGGTGTAGCT 59.860 57.895 22.58 5.26 42.64 3.32
341 342 0.380733 CATCAGCGTCGGTGTAGCTA 59.619 55.000 22.58 4.83 39.48 3.32
342 343 0.381089 ATCAGCGTCGGTGTAGCTAC 59.619 55.000 22.58 17.30 39.48 3.58
343 344 1.226603 CAGCGTCGGTGTAGCTACC 60.227 63.158 21.01 8.57 39.48 3.18
350 351 2.452767 GGTGTAGCTACCGTGCAAC 58.547 57.895 21.01 10.88 34.99 4.17
351 352 0.320073 GGTGTAGCTACCGTGCAACA 60.320 55.000 21.01 0.00 35.74 3.33
352 353 1.674817 GGTGTAGCTACCGTGCAACAT 60.675 52.381 21.01 0.00 35.74 2.71
353 354 2.073816 GTGTAGCTACCGTGCAACATT 58.926 47.619 21.01 0.00 35.74 2.71
354 355 2.073056 TGTAGCTACCGTGCAACATTG 58.927 47.619 21.01 0.00 35.74 2.82
355 356 2.073816 GTAGCTACCGTGCAACATTGT 58.926 47.619 13.20 0.00 35.74 2.71
356 357 1.156736 AGCTACCGTGCAACATTGTC 58.843 50.000 0.00 0.00 35.74 3.18
357 358 0.179225 GCTACCGTGCAACATTGTCG 60.179 55.000 0.00 0.00 35.74 4.35
358 359 1.424403 CTACCGTGCAACATTGTCGA 58.576 50.000 10.97 0.00 35.74 4.20
359 360 1.126113 CTACCGTGCAACATTGTCGAC 59.874 52.381 9.11 9.11 35.74 4.20
360 361 0.531974 ACCGTGCAACATTGTCGACT 60.532 50.000 17.92 0.00 35.74 4.18
361 362 0.163788 CCGTGCAACATTGTCGACTC 59.836 55.000 17.92 0.00 35.74 3.36
362 363 0.163788 CGTGCAACATTGTCGACTCC 59.836 55.000 17.92 0.00 35.74 3.85
363 364 1.225855 GTGCAACATTGTCGACTCCA 58.774 50.000 17.92 0.81 36.32 3.86
364 365 1.806542 GTGCAACATTGTCGACTCCAT 59.193 47.619 17.92 3.39 36.32 3.41
365 366 2.076100 TGCAACATTGTCGACTCCATC 58.924 47.619 17.92 0.92 0.00 3.51
366 367 2.076100 GCAACATTGTCGACTCCATCA 58.924 47.619 17.92 0.00 0.00 3.07
367 368 2.679837 GCAACATTGTCGACTCCATCAT 59.320 45.455 17.92 0.00 0.00 2.45
368 369 3.242543 GCAACATTGTCGACTCCATCATC 60.243 47.826 17.92 0.00 0.00 2.92
369 370 4.186926 CAACATTGTCGACTCCATCATCT 58.813 43.478 17.92 0.00 0.00 2.90
370 371 4.052159 ACATTGTCGACTCCATCATCTC 57.948 45.455 17.92 0.00 0.00 2.75
371 372 3.181471 ACATTGTCGACTCCATCATCTCC 60.181 47.826 17.92 0.00 0.00 3.71
372 373 1.403814 TGTCGACTCCATCATCTCCC 58.596 55.000 17.92 0.00 0.00 4.30
373 374 0.676736 GTCGACTCCATCATCTCCCC 59.323 60.000 8.70 0.00 0.00 4.81
374 375 0.558220 TCGACTCCATCATCTCCCCT 59.442 55.000 0.00 0.00 0.00 4.79
375 376 1.780919 TCGACTCCATCATCTCCCCTA 59.219 52.381 0.00 0.00 0.00 3.53
376 377 1.889829 CGACTCCATCATCTCCCCTAC 59.110 57.143 0.00 0.00 0.00 3.18
384 385 0.397254 CATCTCCCCTACACTCGGGT 60.397 60.000 0.00 0.00 40.24 5.28
385 386 0.338814 ATCTCCCCTACACTCGGGTT 59.661 55.000 0.00 0.00 40.24 4.11
387 388 1.611261 TCCCCTACACTCGGGTTGG 60.611 63.158 0.00 0.00 40.24 3.77
391 392 2.203877 TACACTCGGGTTGGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
393 394 0.544833 TACACTCGGGTTGGGGCTTA 60.545 55.000 0.00 0.00 0.00 3.09
403 404 0.891904 TTGGGGCTTAGAACAACGCC 60.892 55.000 0.00 0.00 41.75 5.68
408 409 1.448985 GCTTAGAACAACGCCCATGA 58.551 50.000 0.00 0.00 0.00 3.07
410 411 1.737793 CTTAGAACAACGCCCATGACC 59.262 52.381 0.00 0.00 0.00 4.02
412 413 2.671619 AACAACGCCCATGACCGG 60.672 61.111 0.00 0.00 0.00 5.28
413 414 3.485346 AACAACGCCCATGACCGGT 62.485 57.895 6.92 6.92 0.00 5.28
419 420 4.386951 CCCATGACCGGTGCGACA 62.387 66.667 14.63 3.25 0.00 4.35
421 422 2.356913 CATGACCGGTGCGACACA 60.357 61.111 14.63 1.79 35.86 3.72
423 424 2.570284 ATGACCGGTGCGACACAGA 61.570 57.895 14.63 0.00 35.86 3.41
424 425 2.733593 GACCGGTGCGACACAGAC 60.734 66.667 14.63 0.00 35.86 3.51
425 426 3.208884 GACCGGTGCGACACAGACT 62.209 63.158 14.63 0.00 35.86 3.24
426 427 1.859427 GACCGGTGCGACACAGACTA 61.859 60.000 14.63 0.00 35.86 2.59
428 429 1.801913 CGGTGCGACACAGACTAGC 60.802 63.158 11.20 0.00 35.86 3.42
430 431 1.587054 GTGCGACACAGACTAGCCT 59.413 57.895 5.30 0.00 34.08 4.58
431 432 0.456995 GTGCGACACAGACTAGCCTC 60.457 60.000 5.30 0.00 34.08 4.70
432 433 0.893727 TGCGACACAGACTAGCCTCA 60.894 55.000 0.00 0.00 0.00 3.86
454 456 2.774234 TGGAAAGAGGGATGGAGATCAC 59.226 50.000 0.00 0.00 31.28 3.06
462 464 1.496429 GGATGGAGATCACCCATGGTT 59.504 52.381 20.22 0.00 43.96 3.67
472 474 2.398554 CCCATGGTTGCCGACGAAG 61.399 63.158 11.73 0.00 0.00 3.79
479 481 1.600485 GGTTGCCGACGAAGAAAAAGA 59.400 47.619 0.00 0.00 0.00 2.52
492 494 6.869388 ACGAAGAAAAAGATAAGGAGTGACTC 59.131 38.462 3.47 3.47 0.00 3.36
496 498 3.791973 AAGATAAGGAGTGACTCGCTG 57.208 47.619 6.50 0.00 0.00 5.18
499 501 0.039180 TAAGGAGTGACTCGCTGGGA 59.961 55.000 6.50 0.00 0.00 4.37
502 504 0.034896 GGAGTGACTCGCTGGGAAAA 59.965 55.000 6.50 0.00 0.00 2.29
504 506 2.427506 GAGTGACTCGCTGGGAAAAAT 58.572 47.619 0.00 0.00 0.00 1.82
509 511 5.817816 AGTGACTCGCTGGGAAAAATATAAG 59.182 40.000 0.00 0.00 0.00 1.73
510 512 5.007724 GTGACTCGCTGGGAAAAATATAAGG 59.992 44.000 0.00 0.00 0.00 2.69
517 520 5.069119 GCTGGGAAAAATATAAGGTTGAGGG 59.931 44.000 0.00 0.00 0.00 4.30
549 552 1.889530 GCGTGGGTCCTACTGAAGCT 61.890 60.000 3.62 0.00 0.00 3.74
559 562 1.227999 TACTGAAGCTTGGCGTGTGC 61.228 55.000 2.10 0.00 41.71 4.57
590 595 4.510038 GCTATGGCCATAGGATGTTTTG 57.490 45.455 40.67 21.96 40.77 2.44
594 599 4.799564 TGGCCATAGGATGTTTTGTTTC 57.200 40.909 0.00 0.00 0.00 2.78
606 611 3.997681 TGTTTTGTTTCGATCCGATAGCA 59.002 39.130 0.00 0.00 35.23 3.49
609 614 2.536365 TGTTTCGATCCGATAGCACAC 58.464 47.619 0.00 0.00 35.23 3.82
614 619 3.499929 ATCCGATAGCACACGCGGG 62.500 63.158 6.92 6.92 45.49 6.13
616 621 4.508128 CGATAGCACACGCGGGGT 62.508 66.667 15.46 6.58 45.49 4.95
627 632 2.825836 GCGGGGTGGCTGAATCTG 60.826 66.667 0.00 0.00 0.00 2.90
628 633 2.671070 CGGGGTGGCTGAATCTGT 59.329 61.111 0.00 0.00 0.00 3.41
629 634 1.904771 CGGGGTGGCTGAATCTGTA 59.095 57.895 0.00 0.00 0.00 2.74
632 637 2.548067 CGGGGTGGCTGAATCTGTATAC 60.548 54.545 0.00 0.00 0.00 1.47
635 640 2.548067 GGTGGCTGAATCTGTATACCCG 60.548 54.545 0.00 0.00 0.00 5.28
640 645 1.958579 TGAATCTGTATACCCGGTCGG 59.041 52.381 0.00 1.86 37.81 4.79
642 647 1.183676 ATCTGTATACCCGGTCGGCC 61.184 60.000 0.00 0.00 33.26 6.13
643 648 2.043147 TGTATACCCGGTCGGCCA 60.043 61.111 6.96 0.00 33.26 5.36
651 656 4.473520 CGGTCGGCCAGCCAAGAT 62.474 66.667 6.96 0.00 35.37 2.40
659 664 0.373716 GCCAGCCAAGATCGTTTACG 59.626 55.000 0.00 0.00 41.45 3.18
674 679 6.578163 TCGTTTACGATATCCATATCACCA 57.422 37.500 0.03 0.00 44.22 4.17
675 680 7.165460 TCGTTTACGATATCCATATCACCAT 57.835 36.000 0.03 0.00 44.22 3.55
676 681 8.283699 TCGTTTACGATATCCATATCACCATA 57.716 34.615 0.03 0.00 44.22 2.74
677 682 8.909923 TCGTTTACGATATCCATATCACCATAT 58.090 33.333 0.03 0.00 44.22 1.78
678 683 8.968242 CGTTTACGATATCCATATCACCATATG 58.032 37.037 7.24 0.00 40.61 1.78
717 722 6.036517 ACAACTTGCTAGATTTGCTCTAATCG 59.963 38.462 1.04 0.00 39.09 3.34
722 727 2.474816 AGATTTGCTCTAATCGCCGTC 58.525 47.619 0.00 0.00 39.09 4.79
732 737 2.875485 TCGCCGTCGAAGAGGAAG 59.125 61.111 0.00 0.00 46.48 3.46
733 738 1.673337 TCGCCGTCGAAGAGGAAGA 60.673 57.895 0.00 0.00 46.48 2.87
734 739 1.514443 CGCCGTCGAAGAGGAAGAC 60.514 63.158 0.00 0.00 46.48 3.01
735 740 1.153804 GCCGTCGAAGAGGAAGACC 60.154 63.158 0.00 0.00 46.48 3.85
745 751 4.558095 CGAAGAGGAAGACCGTGAAGTTTA 60.558 45.833 0.00 0.00 41.83 2.01
780 786 7.403312 TCAAAACTTGAAACATGAAGGAAGA 57.597 32.000 0.00 0.00 36.59 2.87
800 815 2.435586 CCGTGCTTCTCCTGGCAG 60.436 66.667 7.75 7.75 39.22 4.85
825 840 1.141019 CAGATGGTACGACCCGTGG 59.859 63.158 1.93 0.00 41.39 4.94
839 854 3.284449 GTGGTTGGGCACGTGTCC 61.284 66.667 32.20 32.20 41.09 4.02
862 877 2.046285 CCCATTGCGTCTTCCACCC 61.046 63.158 0.00 0.00 0.00 4.61
883 898 3.572539 CGCGCGCTCTCTCTCTCT 61.573 66.667 30.48 0.00 0.00 3.10
884 899 2.327940 GCGCGCTCTCTCTCTCTC 59.672 66.667 26.67 0.00 0.00 3.20
885 900 2.180204 GCGCGCTCTCTCTCTCTCT 61.180 63.158 26.67 0.00 0.00 3.10
886 901 1.934463 CGCGCTCTCTCTCTCTCTC 59.066 63.158 5.56 0.00 0.00 3.20
887 902 0.530650 CGCGCTCTCTCTCTCTCTCT 60.531 60.000 5.56 0.00 0.00 3.10
888 903 0.940126 GCGCTCTCTCTCTCTCTCTG 59.060 60.000 0.00 0.00 0.00 3.35
889 904 1.743772 GCGCTCTCTCTCTCTCTCTGT 60.744 57.143 0.00 0.00 0.00 3.41
890 905 2.205074 CGCTCTCTCTCTCTCTCTGTC 58.795 57.143 0.00 0.00 0.00 3.51
891 906 2.159043 CGCTCTCTCTCTCTCTCTGTCT 60.159 54.545 0.00 0.00 0.00 3.41
954 971 2.581354 CCACTCCAGAAGCTCCCG 59.419 66.667 0.00 0.00 0.00 5.14
1206 1261 1.136984 GACGTCCGCGAGATCAAGT 59.863 57.895 8.23 2.97 42.00 3.16
1213 1268 0.924090 CGCGAGATCAAGTGTAAGGC 59.076 55.000 0.00 0.00 0.00 4.35
1236 1291 2.958355 CGCATCTTAACCAAATCCCCAT 59.042 45.455 0.00 0.00 0.00 4.00
1237 1292 3.384467 CGCATCTTAACCAAATCCCCATT 59.616 43.478 0.00 0.00 0.00 3.16
1250 1305 1.319799 CCCATTCCCCTCTCCCTCT 59.680 63.158 0.00 0.00 0.00 3.69
1263 1318 2.438614 CCTCTCTCTCCGGCGTCA 60.439 66.667 6.01 0.00 0.00 4.35
1267 1328 1.064946 CTCTCTCCGGCGTCATGTC 59.935 63.158 6.01 0.00 0.00 3.06
1272 1333 2.225791 CTCCGGCGTCATGTCTCCAA 62.226 60.000 6.01 0.00 0.00 3.53
1273 1334 2.100631 CCGGCGTCATGTCTCCAAC 61.101 63.158 6.01 0.00 0.00 3.77
1274 1335 1.079819 CGGCGTCATGTCTCCAACT 60.080 57.895 0.00 0.00 0.00 3.16
1275 1336 1.078759 CGGCGTCATGTCTCCAACTC 61.079 60.000 0.00 0.00 0.00 3.01
1276 1337 0.247736 GGCGTCATGTCTCCAACTCT 59.752 55.000 0.00 0.00 0.00 3.24
1277 1338 1.634702 GCGTCATGTCTCCAACTCTC 58.365 55.000 0.00 0.00 0.00 3.20
1278 1339 1.737363 GCGTCATGTCTCCAACTCTCC 60.737 57.143 0.00 0.00 0.00 3.71
1279 1340 1.546029 CGTCATGTCTCCAACTCTCCA 59.454 52.381 0.00 0.00 0.00 3.86
1280 1341 2.167281 CGTCATGTCTCCAACTCTCCAT 59.833 50.000 0.00 0.00 0.00 3.41
1281 1342 3.368843 CGTCATGTCTCCAACTCTCCATT 60.369 47.826 0.00 0.00 0.00 3.16
1282 1343 4.583871 GTCATGTCTCCAACTCTCCATTT 58.416 43.478 0.00 0.00 0.00 2.32
1283 1344 4.394300 GTCATGTCTCCAACTCTCCATTTG 59.606 45.833 0.00 0.00 0.00 2.32
1284 1345 2.783135 TGTCTCCAACTCTCCATTTGC 58.217 47.619 0.00 0.00 0.00 3.68
1289 1350 0.095935 CAACTCTCCATTTGCTCGCG 59.904 55.000 0.00 0.00 0.00 5.87
1301 1362 2.634217 CTCGCGCGCTAGATCTGA 59.366 61.111 30.48 15.77 0.00 3.27
1584 1728 2.289444 GCTGCAGTACTGGGTTCTTGTA 60.289 50.000 23.95 0.00 0.00 2.41
1631 1781 5.244626 CCCCTTTTCTGTGTGAAATTCAGAT 59.755 40.000 0.00 0.00 43.34 2.90
1909 2102 5.805994 GTGTCTTAATGCTAGAGTTTACGCT 59.194 40.000 0.00 0.00 0.00 5.07
2309 3445 8.239314 TCTGCAAAGTGATCAATCTTTTATGAC 58.761 33.333 8.24 0.00 32.52 3.06
3314 6026 6.096705 TCTGAAAAATCAGTTGAAGCAAAGGA 59.903 34.615 5.80 0.00 38.75 3.36
3425 6254 7.347448 GGCATGAAAATGAAGTTCTTGTTTTC 58.653 34.615 21.55 21.55 38.56 2.29
3428 6257 9.910511 CATGAAAATGAAGTTCTTGTTTTCTTG 57.089 29.630 24.84 24.02 38.76 3.02
3564 6427 9.326489 TGCAGTAGGAATGTAGGATTTCTATAT 57.674 33.333 0.00 0.00 32.16 0.86
3900 6800 6.378661 AAATAGGCCTACATGATGCTATCA 57.621 37.500 16.61 2.05 44.55 2.15
4924 15490 7.222872 TCATTAGCATTGATTTGGTTGGTTTT 58.777 30.769 0.00 0.00 0.00 2.43
5108 15695 5.720202 CCAAAGCTAGGGGTAACAAAAATC 58.280 41.667 0.00 0.00 39.74 2.17
5299 15909 6.389091 CATTTCCAACAGCTATTTTGCACTA 58.611 36.000 0.00 0.00 34.99 2.74
5929 17280 6.183360 CCTCTGTTTTGATGTAATCCATGGAC 60.183 42.308 18.99 5.76 44.73 4.02
5931 17282 6.718912 TCTGTTTTGATGTAATCCATGGACAA 59.281 34.615 18.99 12.81 44.73 3.18
5932 17283 7.396907 TCTGTTTTGATGTAATCCATGGACAAT 59.603 33.333 18.99 9.22 44.73 2.71
5933 17284 8.586879 TGTTTTGATGTAATCCATGGACAATA 57.413 30.769 18.99 8.13 44.73 1.90
5934 17285 8.685427 TGTTTTGATGTAATCCATGGACAATAG 58.315 33.333 18.99 0.00 44.73 1.73
5935 17286 6.882610 TTGATGTAATCCATGGACAATAGC 57.117 37.500 18.99 9.79 44.73 2.97
5936 17287 5.939447 TGATGTAATCCATGGACAATAGCA 58.061 37.500 18.99 12.41 44.73 3.49
6291 19727 5.237344 CCTTGTTGCTGTTAGCCATATACTC 59.763 44.000 0.00 0.00 41.51 2.59
6292 19728 5.351948 TGTTGCTGTTAGCCATATACTCA 57.648 39.130 0.00 0.00 41.51 3.41
6294 19730 5.991606 TGTTGCTGTTAGCCATATACTCATC 59.008 40.000 0.00 0.00 41.51 2.92
6295 19731 5.806654 TGCTGTTAGCCATATACTCATCA 57.193 39.130 0.00 0.00 41.51 3.07
6296 19732 5.787380 TGCTGTTAGCCATATACTCATCAG 58.213 41.667 0.00 0.00 41.51 2.90
6798 21059 5.888161 CCCATTATACTCATTTAGGGCATCC 59.112 44.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.235402 GTTTAGTCCAGAACCGGGATCA 59.765 50.000 6.32 0.00 36.67 2.92
7 8 0.978907 TCCCGGTTTAGTCCAGAACC 59.021 55.000 0.00 0.00 41.47 3.62
8 9 1.622312 AGTCCCGGTTTAGTCCAGAAC 59.378 52.381 0.00 0.00 0.00 3.01
9 10 2.019807 AGTCCCGGTTTAGTCCAGAA 57.980 50.000 0.00 0.00 0.00 3.02
10 11 2.905415 TAGTCCCGGTTTAGTCCAGA 57.095 50.000 0.00 0.00 0.00 3.86
11 12 3.431766 CCATTAGTCCCGGTTTAGTCCAG 60.432 52.174 0.00 0.00 0.00 3.86
12 13 2.502538 CCATTAGTCCCGGTTTAGTCCA 59.497 50.000 0.00 0.00 0.00 4.02
13 14 2.158856 CCCATTAGTCCCGGTTTAGTCC 60.159 54.545 0.00 0.00 0.00 3.85
14 15 2.744166 GCCCATTAGTCCCGGTTTAGTC 60.744 54.545 0.00 0.00 0.00 2.59
15 16 1.211212 GCCCATTAGTCCCGGTTTAGT 59.789 52.381 0.00 0.00 0.00 2.24
16 17 1.489230 AGCCCATTAGTCCCGGTTTAG 59.511 52.381 0.00 0.00 0.00 1.85
17 18 1.210967 CAGCCCATTAGTCCCGGTTTA 59.789 52.381 0.00 0.00 0.00 2.01
18 19 0.034477 CAGCCCATTAGTCCCGGTTT 60.034 55.000 0.00 0.00 0.00 3.27
19 20 0.912487 TCAGCCCATTAGTCCCGGTT 60.912 55.000 0.00 0.00 0.00 4.44
20 21 1.306654 TCAGCCCATTAGTCCCGGT 60.307 57.895 0.00 0.00 0.00 5.28
21 22 1.146263 GTCAGCCCATTAGTCCCGG 59.854 63.158 0.00 0.00 0.00 5.73
22 23 1.146263 GGTCAGCCCATTAGTCCCG 59.854 63.158 0.00 0.00 0.00 5.14
35 36 2.690653 TTTGGTTCAGGCCGGGTCAG 62.691 60.000 2.18 0.00 0.00 3.51
36 37 2.690653 CTTTGGTTCAGGCCGGGTCA 62.691 60.000 2.18 0.00 0.00 4.02
37 38 1.971695 CTTTGGTTCAGGCCGGGTC 60.972 63.158 2.18 0.00 0.00 4.46
38 39 2.115266 CTTTGGTTCAGGCCGGGT 59.885 61.111 2.18 0.00 0.00 5.28
39 40 3.373565 GCTTTGGTTCAGGCCGGG 61.374 66.667 2.18 0.00 0.00 5.73
40 41 3.373565 GGCTTTGGTTCAGGCCGG 61.374 66.667 0.00 0.00 35.08 6.13
41 42 3.373565 GGGCTTTGGTTCAGGCCG 61.374 66.667 0.00 0.00 46.22 6.13
43 44 0.540597 AAGAGGGCTTTGGTTCAGGC 60.541 55.000 0.00 0.00 36.08 4.85
44 45 2.001076 AAAGAGGGCTTTGGTTCAGG 57.999 50.000 0.00 0.00 42.54 3.86
45 46 3.225940 AGAAAAGAGGGCTTTGGTTCAG 58.774 45.455 0.00 0.00 43.32 3.02
46 47 3.312736 AGAAAAGAGGGCTTTGGTTCA 57.687 42.857 0.00 0.00 43.32 3.18
47 48 4.399219 AGTAGAAAAGAGGGCTTTGGTTC 58.601 43.478 0.00 0.00 43.32 3.62
48 49 4.455070 AGTAGAAAAGAGGGCTTTGGTT 57.545 40.909 0.00 0.00 43.32 3.67
49 50 4.597940 ACTAGTAGAAAAGAGGGCTTTGGT 59.402 41.667 3.59 0.00 43.32 3.67
50 51 4.938226 CACTAGTAGAAAAGAGGGCTTTGG 59.062 45.833 3.59 0.00 43.32 3.28
51 52 4.393371 GCACTAGTAGAAAAGAGGGCTTTG 59.607 45.833 3.59 0.00 43.32 2.77
52 53 4.565861 GGCACTAGTAGAAAAGAGGGCTTT 60.566 45.833 3.59 0.00 45.95 3.51
53 54 3.055021 GGCACTAGTAGAAAAGAGGGCTT 60.055 47.826 3.59 0.00 35.37 4.35
54 55 2.502130 GGCACTAGTAGAAAAGAGGGCT 59.498 50.000 3.59 0.00 0.00 5.19
55 56 2.502130 AGGCACTAGTAGAAAAGAGGGC 59.498 50.000 3.59 0.00 36.02 5.19
56 57 3.181485 CGAGGCACTAGTAGAAAAGAGGG 60.181 52.174 3.59 0.00 41.55 4.30
57 58 3.444388 ACGAGGCACTAGTAGAAAAGAGG 59.556 47.826 3.59 0.00 43.92 3.69
58 59 4.156190 TGACGAGGCACTAGTAGAAAAGAG 59.844 45.833 3.59 0.00 46.21 2.85
59 60 4.077108 TGACGAGGCACTAGTAGAAAAGA 58.923 43.478 3.59 0.00 46.21 2.52
60 61 4.167268 GTGACGAGGCACTAGTAGAAAAG 58.833 47.826 3.59 0.00 46.21 2.27
61 62 3.057033 GGTGACGAGGCACTAGTAGAAAA 60.057 47.826 9.13 0.00 46.21 2.29
62 63 2.490903 GGTGACGAGGCACTAGTAGAAA 59.509 50.000 9.13 0.00 46.21 2.52
63 64 2.089980 GGTGACGAGGCACTAGTAGAA 58.910 52.381 9.13 0.00 46.21 2.10
64 65 1.747709 GGTGACGAGGCACTAGTAGA 58.252 55.000 9.13 0.00 46.21 2.59
78 79 2.109126 GGAAGCTGCATCCGGTGAC 61.109 63.158 8.29 0.00 0.00 3.67
79 80 2.268920 GGAAGCTGCATCCGGTGA 59.731 61.111 8.29 0.00 0.00 4.02
84 85 0.459585 TAACGACGGAAGCTGCATCC 60.460 55.000 13.69 13.69 0.00 3.51
85 86 1.060698 GTTAACGACGGAAGCTGCATC 59.939 52.381 1.02 0.00 0.00 3.91
86 87 1.076332 GTTAACGACGGAAGCTGCAT 58.924 50.000 1.02 0.00 0.00 3.96
87 88 0.249531 TGTTAACGACGGAAGCTGCA 60.250 50.000 1.02 0.00 0.00 4.41
88 89 0.438830 CTGTTAACGACGGAAGCTGC 59.561 55.000 0.00 0.00 36.72 5.25
89 90 1.779569 ACTGTTAACGACGGAAGCTG 58.220 50.000 0.00 0.00 38.07 4.24
90 91 2.132762 CAACTGTTAACGACGGAAGCT 58.867 47.619 0.00 0.00 38.07 3.74
91 92 1.862827 ACAACTGTTAACGACGGAAGC 59.137 47.619 0.00 0.00 38.07 3.86
92 93 3.120782 GCTACAACTGTTAACGACGGAAG 59.879 47.826 0.00 0.00 38.07 3.46
93 94 3.052036 GCTACAACTGTTAACGACGGAA 58.948 45.455 0.00 0.00 38.07 4.30
94 95 2.034432 TGCTACAACTGTTAACGACGGA 59.966 45.455 0.00 0.00 38.07 4.69
95 96 2.396601 TGCTACAACTGTTAACGACGG 58.603 47.619 0.00 0.00 40.65 4.79
96 97 3.181534 CCATGCTACAACTGTTAACGACG 60.182 47.826 0.26 0.00 0.00 5.12
97 98 3.124636 CCCATGCTACAACTGTTAACGAC 59.875 47.826 0.26 0.00 0.00 4.34
98 99 3.331150 CCCATGCTACAACTGTTAACGA 58.669 45.455 0.26 0.00 0.00 3.85
99 100 2.418628 CCCCATGCTACAACTGTTAACG 59.581 50.000 0.26 0.00 0.00 3.18
100 101 3.418047 ACCCCATGCTACAACTGTTAAC 58.582 45.455 0.00 0.00 0.00 2.01
101 102 3.560453 GGACCCCATGCTACAACTGTTAA 60.560 47.826 0.00 0.00 0.00 2.01
102 103 2.026636 GGACCCCATGCTACAACTGTTA 60.027 50.000 0.00 0.00 0.00 2.41
103 104 1.271926 GGACCCCATGCTACAACTGTT 60.272 52.381 0.00 0.00 0.00 3.16
104 105 0.328258 GGACCCCATGCTACAACTGT 59.672 55.000 0.00 0.00 0.00 3.55
105 106 0.620556 AGGACCCCATGCTACAACTG 59.379 55.000 0.00 0.00 0.00 3.16
106 107 0.620556 CAGGACCCCATGCTACAACT 59.379 55.000 0.00 0.00 0.00 3.16
107 108 1.032114 GCAGGACCCCATGCTACAAC 61.032 60.000 0.00 0.00 39.38 3.32
108 109 1.302949 GCAGGACCCCATGCTACAA 59.697 57.895 0.00 0.00 39.38 2.41
109 110 2.679342 GGCAGGACCCCATGCTACA 61.679 63.158 4.38 0.00 42.19 2.74
110 111 1.999634 ATGGCAGGACCCCATGCTAC 62.000 60.000 1.70 0.00 41.40 3.58
111 112 1.697394 ATGGCAGGACCCCATGCTA 60.697 57.895 1.70 0.00 41.40 3.49
112 113 3.025599 ATGGCAGGACCCCATGCT 61.026 61.111 1.70 0.00 41.40 3.79
113 114 2.520260 GATGGCAGGACCCCATGC 60.520 66.667 6.98 1.41 42.94 4.06
114 115 2.203252 CGATGGCAGGACCCCATG 60.203 66.667 6.98 0.00 42.94 3.66
115 116 4.195334 GCGATGGCAGGACCCCAT 62.195 66.667 2.10 2.10 45.47 4.00
125 126 3.285215 CCATGGAGCTGCGATGGC 61.285 66.667 18.56 0.00 44.38 4.40
127 128 3.285215 GGCCATGGAGCTGCGATG 61.285 66.667 18.40 5.77 33.02 3.84
128 129 4.923942 CGGCCATGGAGCTGCGAT 62.924 66.667 18.40 0.00 31.10 4.58
132 133 3.480679 TATGGCGGCCATGGAGCTG 62.481 63.158 38.03 13.87 44.84 4.24
133 134 3.170672 TATGGCGGCCATGGAGCT 61.171 61.111 38.03 19.01 44.84 4.09
134 135 2.670934 CTATGGCGGCCATGGAGC 60.671 66.667 38.03 19.61 43.83 4.70
135 136 1.149174 AACTATGGCGGCCATGGAG 59.851 57.895 40.79 32.23 43.83 3.86
136 137 1.152984 CAACTATGGCGGCCATGGA 60.153 57.895 40.79 24.48 43.83 3.41
137 138 0.179032 TACAACTATGGCGGCCATGG 60.179 55.000 38.03 36.51 44.84 3.66
138 139 1.229428 CTACAACTATGGCGGCCATG 58.771 55.000 38.03 29.04 44.84 3.66
139 140 0.535102 GCTACAACTATGGCGGCCAT 60.535 55.000 34.59 34.59 46.99 4.40
140 141 1.153249 GCTACAACTATGGCGGCCA 60.153 57.895 26.11 26.11 38.19 5.36
141 142 0.880718 GAGCTACAACTATGGCGGCC 60.881 60.000 13.32 13.32 0.00 6.13
142 143 0.880718 GGAGCTACAACTATGGCGGC 60.881 60.000 0.00 0.00 0.00 6.53
143 144 0.753262 AGGAGCTACAACTATGGCGG 59.247 55.000 0.00 0.00 0.00 6.13
144 145 1.269831 GGAGGAGCTACAACTATGGCG 60.270 57.143 0.00 0.00 0.00 5.69
145 146 1.269831 CGGAGGAGCTACAACTATGGC 60.270 57.143 0.00 0.00 0.00 4.40
146 147 2.032620 ACGGAGGAGCTACAACTATGG 58.967 52.381 0.00 0.00 0.00 2.74
147 148 2.427453 ACACGGAGGAGCTACAACTATG 59.573 50.000 0.00 0.00 0.00 2.23
148 149 2.688958 GACACGGAGGAGCTACAACTAT 59.311 50.000 0.00 0.00 0.00 2.12
149 150 2.089980 GACACGGAGGAGCTACAACTA 58.910 52.381 0.00 0.00 0.00 2.24
150 151 0.889306 GACACGGAGGAGCTACAACT 59.111 55.000 0.00 0.00 0.00 3.16
151 152 0.456312 CGACACGGAGGAGCTACAAC 60.456 60.000 0.00 0.00 0.00 3.32
152 153 0.607217 TCGACACGGAGGAGCTACAA 60.607 55.000 0.00 0.00 0.00 2.41
153 154 1.002990 TCGACACGGAGGAGCTACA 60.003 57.895 0.00 0.00 0.00 2.74
154 155 1.722677 CTCGACACGGAGGAGCTAC 59.277 63.158 0.00 0.00 0.00 3.58
155 156 4.220413 CTCGACACGGAGGAGCTA 57.780 61.111 0.00 0.00 0.00 3.32
161 162 0.170561 CTACAACCCTCGACACGGAG 59.829 60.000 0.00 0.00 0.00 4.63
162 163 1.870055 GCTACAACCCTCGACACGGA 61.870 60.000 0.00 0.00 0.00 4.69
163 164 1.445582 GCTACAACCCTCGACACGG 60.446 63.158 0.00 0.00 0.00 4.94
164 165 1.445582 GGCTACAACCCTCGACACG 60.446 63.158 0.00 0.00 0.00 4.49
165 166 0.669625 GTGGCTACAACCCTCGACAC 60.670 60.000 0.00 0.00 0.00 3.67
166 167 1.116536 TGTGGCTACAACCCTCGACA 61.117 55.000 0.00 0.00 32.88 4.35
167 168 0.249398 ATGTGGCTACAACCCTCGAC 59.751 55.000 7.10 0.00 40.84 4.20
168 169 0.535335 GATGTGGCTACAACCCTCGA 59.465 55.000 7.10 0.00 40.84 4.04
169 170 0.537188 AGATGTGGCTACAACCCTCG 59.463 55.000 7.10 0.00 40.84 4.63
170 171 1.407437 CCAGATGTGGCTACAACCCTC 60.407 57.143 7.10 0.00 40.84 4.30
171 172 0.620556 CCAGATGTGGCTACAACCCT 59.379 55.000 7.10 2.09 40.84 4.34
172 173 3.175133 CCAGATGTGGCTACAACCC 57.825 57.895 7.10 0.00 40.84 4.11
182 183 2.930040 GTGACGATGGTAACCAGATGTG 59.070 50.000 0.00 0.00 36.75 3.21
183 184 2.093658 GGTGACGATGGTAACCAGATGT 60.094 50.000 9.48 0.00 45.88 3.06
184 185 2.550978 GGTGACGATGGTAACCAGATG 58.449 52.381 9.48 0.00 45.88 2.90
185 186 2.981859 GGTGACGATGGTAACCAGAT 57.018 50.000 9.48 0.00 45.88 2.90
189 190 2.172851 TTGTGGTGACGATGGTAACC 57.827 50.000 7.45 7.45 46.67 2.85
190 191 2.676342 GGATTGTGGTGACGATGGTAAC 59.324 50.000 0.00 0.00 0.00 2.50
191 192 2.303311 TGGATTGTGGTGACGATGGTAA 59.697 45.455 0.00 0.00 0.00 2.85
192 193 1.903183 TGGATTGTGGTGACGATGGTA 59.097 47.619 0.00 0.00 0.00 3.25
193 194 0.690192 TGGATTGTGGTGACGATGGT 59.310 50.000 0.00 0.00 0.00 3.55
194 195 1.086696 GTGGATTGTGGTGACGATGG 58.913 55.000 0.00 0.00 0.00 3.51
195 196 1.807139 TGTGGATTGTGGTGACGATG 58.193 50.000 0.00 0.00 0.00 3.84
196 197 2.358957 CATGTGGATTGTGGTGACGAT 58.641 47.619 0.00 0.00 0.00 3.73
197 198 1.610363 CCATGTGGATTGTGGTGACGA 60.610 52.381 0.00 0.00 37.39 4.20
198 199 0.804364 CCATGTGGATTGTGGTGACG 59.196 55.000 0.00 0.00 37.39 4.35
199 200 1.909700 ACCATGTGGATTGTGGTGAC 58.090 50.000 5.96 0.00 44.21 3.67
200 201 2.237643 CAACCATGTGGATTGTGGTGA 58.762 47.619 5.96 0.00 45.10 4.02
201 202 1.962807 ACAACCATGTGGATTGTGGTG 59.037 47.619 5.96 0.00 45.10 4.17
203 204 2.237643 TGACAACCATGTGGATTGTGG 58.762 47.619 18.24 0.00 40.74 4.17
204 205 3.067883 TGTTGACAACCATGTGGATTGTG 59.932 43.478 15.59 8.90 40.74 3.33
205 206 3.295093 TGTTGACAACCATGTGGATTGT 58.705 40.909 15.59 15.18 40.74 2.71
206 207 4.524316 ATGTTGACAACCATGTGGATTG 57.476 40.909 15.59 8.98 40.74 2.67
207 208 4.706476 CCTATGTTGACAACCATGTGGATT 59.294 41.667 15.59 0.00 40.74 3.01
208 209 4.263905 ACCTATGTTGACAACCATGTGGAT 60.264 41.667 15.59 3.43 40.74 3.41
209 210 3.073798 ACCTATGTTGACAACCATGTGGA 59.926 43.478 15.59 0.00 40.74 4.02
210 211 3.420893 ACCTATGTTGACAACCATGTGG 58.579 45.455 15.59 15.13 40.74 4.17
211 212 4.071423 TGACCTATGTTGACAACCATGTG 58.929 43.478 15.59 3.60 40.74 3.21
212 213 4.365514 TGACCTATGTTGACAACCATGT 57.634 40.909 15.59 7.58 44.25 3.21
213 214 5.183713 ACATTGACCTATGTTGACAACCATG 59.816 40.000 15.59 5.41 35.24 3.66
214 215 5.324409 ACATTGACCTATGTTGACAACCAT 58.676 37.500 15.59 11.11 35.24 3.55
215 216 4.724399 ACATTGACCTATGTTGACAACCA 58.276 39.130 15.59 4.59 35.24 3.67
216 217 4.156008 GGACATTGACCTATGTTGACAACC 59.844 45.833 15.59 0.00 38.80 3.77
217 218 4.156008 GGGACATTGACCTATGTTGACAAC 59.844 45.833 11.54 11.54 38.80 3.32
218 219 4.331968 GGGACATTGACCTATGTTGACAA 58.668 43.478 5.17 0.00 38.80 3.18
219 220 3.308117 GGGGACATTGACCTATGTTGACA 60.308 47.826 5.17 0.00 38.80 3.58
220 221 3.279434 GGGGACATTGACCTATGTTGAC 58.721 50.000 5.17 0.00 38.80 3.18
221 222 2.916269 TGGGGACATTGACCTATGTTGA 59.084 45.455 5.17 0.00 38.80 3.18
222 223 3.282021 CTGGGGACATTGACCTATGTTG 58.718 50.000 5.17 0.00 38.80 3.33
223 224 2.357154 GCTGGGGACATTGACCTATGTT 60.357 50.000 5.17 0.00 38.80 2.71
224 225 1.212935 GCTGGGGACATTGACCTATGT 59.787 52.381 5.17 0.00 41.30 2.29
225 226 1.811558 CGCTGGGGACATTGACCTATG 60.812 57.143 5.17 0.00 41.51 2.23
226 227 0.469917 CGCTGGGGACATTGACCTAT 59.530 55.000 5.17 0.00 41.51 2.57
227 228 1.904771 CGCTGGGGACATTGACCTA 59.095 57.895 5.17 0.00 41.51 3.08
228 229 2.671070 CGCTGGGGACATTGACCT 59.329 61.111 5.17 0.00 41.51 3.85
229 230 2.252072 TAGCGCTGGGGACATTGACC 62.252 60.000 22.90 0.00 41.51 4.02
230 231 0.392461 TTAGCGCTGGGGACATTGAC 60.392 55.000 22.90 0.00 41.51 3.18
231 232 0.392461 GTTAGCGCTGGGGACATTGA 60.392 55.000 22.90 0.00 41.51 2.57
232 233 0.392998 AGTTAGCGCTGGGGACATTG 60.393 55.000 22.90 0.00 41.51 2.82
233 234 0.107654 GAGTTAGCGCTGGGGACATT 60.108 55.000 22.90 0.00 41.51 2.71
234 235 1.522569 GAGTTAGCGCTGGGGACAT 59.477 57.895 22.90 0.00 41.51 3.06
235 236 2.978824 GAGTTAGCGCTGGGGACA 59.021 61.111 22.90 0.00 39.59 4.02
236 237 2.202756 CGAGTTAGCGCTGGGGAC 60.203 66.667 22.90 13.18 0.00 4.46
244 245 1.527793 GCTGATTGTTGCGAGTTAGCG 60.528 52.381 0.00 0.00 40.67 4.26
245 246 1.464608 TGCTGATTGTTGCGAGTTAGC 59.535 47.619 0.00 0.00 37.71 3.09
246 247 2.475187 GCTGCTGATTGTTGCGAGTTAG 60.475 50.000 0.00 0.00 0.00 2.34
247 248 1.464608 GCTGCTGATTGTTGCGAGTTA 59.535 47.619 0.00 0.00 0.00 2.24
248 249 0.239347 GCTGCTGATTGTTGCGAGTT 59.761 50.000 0.00 0.00 0.00 3.01
249 250 0.886043 TGCTGCTGATTGTTGCGAGT 60.886 50.000 0.00 0.00 0.00 4.18
250 251 0.450583 ATGCTGCTGATTGTTGCGAG 59.549 50.000 0.00 0.00 0.00 5.03
251 252 0.883153 AATGCTGCTGATTGTTGCGA 59.117 45.000 0.00 0.00 0.00 5.10
252 253 0.989164 CAATGCTGCTGATTGTTGCG 59.011 50.000 0.00 0.00 0.00 4.85
253 254 2.259618 CTCAATGCTGCTGATTGTTGC 58.740 47.619 11.12 0.00 33.33 4.17
254 255 2.876091 CCTCAATGCTGCTGATTGTTG 58.124 47.619 11.12 6.90 33.33 3.33
255 256 1.203994 GCCTCAATGCTGCTGATTGTT 59.796 47.619 11.12 0.00 33.33 2.83
256 257 0.815734 GCCTCAATGCTGCTGATTGT 59.184 50.000 11.12 0.00 33.33 2.71
257 258 1.103803 AGCCTCAATGCTGCTGATTG 58.896 50.000 0.00 3.76 40.90 2.67
258 259 1.749634 GAAGCCTCAATGCTGCTGATT 59.250 47.619 0.00 0.00 41.80 2.57
259 260 1.390565 GAAGCCTCAATGCTGCTGAT 58.609 50.000 0.00 0.00 41.80 2.90
260 261 0.679002 GGAAGCCTCAATGCTGCTGA 60.679 55.000 0.00 0.00 41.80 4.26
261 262 1.664321 GGGAAGCCTCAATGCTGCTG 61.664 60.000 0.00 0.00 41.80 4.41
262 263 1.379576 GGGAAGCCTCAATGCTGCT 60.380 57.895 0.00 0.00 41.80 4.24
263 264 0.969409 AAGGGAAGCCTCAATGCTGC 60.969 55.000 0.00 0.00 41.80 5.25
264 265 0.815734 CAAGGGAAGCCTCAATGCTG 59.184 55.000 0.00 0.00 41.80 4.41
265 266 0.969409 GCAAGGGAAGCCTCAATGCT 60.969 55.000 0.00 0.00 45.43 3.79
266 267 1.252904 TGCAAGGGAAGCCTCAATGC 61.253 55.000 0.00 0.00 0.00 3.56
267 268 0.815734 CTGCAAGGGAAGCCTCAATG 59.184 55.000 0.00 0.00 0.00 2.82
268 269 3.277962 CTGCAAGGGAAGCCTCAAT 57.722 52.632 0.00 0.00 0.00 2.57
269 270 4.828409 CTGCAAGGGAAGCCTCAA 57.172 55.556 0.00 0.00 0.00 3.02
287 288 1.303282 GGGGTGATTGGGAGTGACC 59.697 63.158 0.00 0.00 38.08 4.02
288 289 1.208165 AGGGGGTGATTGGGAGTGAC 61.208 60.000 0.00 0.00 0.00 3.67
289 290 0.914417 GAGGGGGTGATTGGGAGTGA 60.914 60.000 0.00 0.00 0.00 3.41
290 291 1.609783 GAGGGGGTGATTGGGAGTG 59.390 63.158 0.00 0.00 0.00 3.51
291 292 1.619669 GGAGGGGGTGATTGGGAGT 60.620 63.158 0.00 0.00 0.00 3.85
292 293 1.308216 AGGAGGGGGTGATTGGGAG 60.308 63.158 0.00 0.00 0.00 4.30
293 294 1.307866 GAGGAGGGGGTGATTGGGA 60.308 63.158 0.00 0.00 0.00 4.37
294 295 0.995675 ATGAGGAGGGGGTGATTGGG 60.996 60.000 0.00 0.00 0.00 4.12
295 296 0.475906 GATGAGGAGGGGGTGATTGG 59.524 60.000 0.00 0.00 0.00 3.16
296 297 1.516110 AGATGAGGAGGGGGTGATTG 58.484 55.000 0.00 0.00 0.00 2.67
297 298 2.131023 GAAGATGAGGAGGGGGTGATT 58.869 52.381 0.00 0.00 0.00 2.57
298 299 1.296523 AGAAGATGAGGAGGGGGTGAT 59.703 52.381 0.00 0.00 0.00 3.06
299 300 0.719015 AGAAGATGAGGAGGGGGTGA 59.281 55.000 0.00 0.00 0.00 4.02
300 301 1.127343 GAGAAGATGAGGAGGGGGTG 58.873 60.000 0.00 0.00 0.00 4.61
301 302 1.022903 AGAGAAGATGAGGAGGGGGT 58.977 55.000 0.00 0.00 0.00 4.95
302 303 1.422531 CAGAGAAGATGAGGAGGGGG 58.577 60.000 0.00 0.00 0.00 5.40
303 304 0.758123 GCAGAGAAGATGAGGAGGGG 59.242 60.000 0.00 0.00 0.00 4.79
304 305 1.493861 TGCAGAGAAGATGAGGAGGG 58.506 55.000 0.00 0.00 0.00 4.30
305 306 2.699321 TGATGCAGAGAAGATGAGGAGG 59.301 50.000 0.00 0.00 0.00 4.30
306 307 3.800949 GCTGATGCAGAGAAGATGAGGAG 60.801 52.174 0.00 0.00 39.41 3.69
307 308 2.102757 GCTGATGCAGAGAAGATGAGGA 59.897 50.000 0.00 0.00 39.41 3.71
308 309 2.485903 GCTGATGCAGAGAAGATGAGG 58.514 52.381 0.00 0.00 39.41 3.86
309 310 2.128821 CGCTGATGCAGAGAAGATGAG 58.871 52.381 0.00 0.00 39.64 2.90
310 311 1.479730 ACGCTGATGCAGAGAAGATGA 59.520 47.619 5.20 0.00 39.64 2.92
311 312 1.859703 GACGCTGATGCAGAGAAGATG 59.140 52.381 5.20 0.00 39.64 2.90
312 313 1.535649 CGACGCTGATGCAGAGAAGAT 60.536 52.381 5.20 0.00 39.64 2.40
313 314 0.179153 CGACGCTGATGCAGAGAAGA 60.179 55.000 5.20 0.00 39.64 2.87
314 315 1.144565 CCGACGCTGATGCAGAGAAG 61.145 60.000 5.20 0.00 39.64 2.85
315 316 1.153765 CCGACGCTGATGCAGAGAA 60.154 57.895 5.20 0.00 39.64 2.87
316 317 2.343426 ACCGACGCTGATGCAGAGA 61.343 57.895 5.20 0.00 39.64 3.10
317 318 2.163390 CACCGACGCTGATGCAGAG 61.163 63.158 0.00 0.00 39.64 3.35
318 319 1.591504 TACACCGACGCTGATGCAGA 61.592 55.000 0.00 0.00 39.64 4.26
319 320 1.142185 CTACACCGACGCTGATGCAG 61.142 60.000 0.00 0.00 39.64 4.41
320 321 1.153842 CTACACCGACGCTGATGCA 60.154 57.895 0.00 0.00 39.64 3.96
321 322 2.517450 GCTACACCGACGCTGATGC 61.517 63.158 0.00 0.00 0.00 3.91
322 323 0.380733 TAGCTACACCGACGCTGATG 59.619 55.000 0.00 0.00 35.33 3.07
323 324 0.381089 GTAGCTACACCGACGCTGAT 59.619 55.000 19.15 0.00 35.33 2.90
324 325 1.651240 GGTAGCTACACCGACGCTGA 61.651 60.000 24.75 0.00 35.33 4.26
325 326 1.226603 GGTAGCTACACCGACGCTG 60.227 63.158 24.75 0.00 35.33 5.18
326 327 3.194719 GGTAGCTACACCGACGCT 58.805 61.111 24.75 0.00 37.77 5.07
332 333 0.320073 TGTTGCACGGTAGCTACACC 60.320 55.000 24.75 10.93 43.38 4.16
333 334 3.204505 TGTTGCACGGTAGCTACAC 57.795 52.632 24.75 13.54 43.38 2.90
335 336 2.073816 ACAATGTTGCACGGTAGCTAC 58.926 47.619 15.88 15.88 40.01 3.58
336 337 2.343101 GACAATGTTGCACGGTAGCTA 58.657 47.619 0.00 0.00 34.99 3.32
337 338 1.156736 GACAATGTTGCACGGTAGCT 58.843 50.000 0.00 0.00 34.99 3.32
338 339 0.179225 CGACAATGTTGCACGGTAGC 60.179 55.000 0.00 0.00 0.00 3.58
339 340 1.126113 GTCGACAATGTTGCACGGTAG 59.874 52.381 11.55 0.00 34.07 3.18
340 341 1.141645 GTCGACAATGTTGCACGGTA 58.858 50.000 11.55 0.00 34.07 4.02
341 342 0.531974 AGTCGACAATGTTGCACGGT 60.532 50.000 19.50 0.00 34.07 4.83
342 343 0.163788 GAGTCGACAATGTTGCACGG 59.836 55.000 19.50 0.00 34.07 4.94
343 344 0.163788 GGAGTCGACAATGTTGCACG 59.836 55.000 19.50 6.60 34.39 5.34
344 345 1.225855 TGGAGTCGACAATGTTGCAC 58.774 50.000 19.50 0.00 0.00 4.57
345 346 2.076100 GATGGAGTCGACAATGTTGCA 58.924 47.619 19.50 8.42 0.00 4.08
346 347 2.076100 TGATGGAGTCGACAATGTTGC 58.924 47.619 19.50 1.99 0.00 4.17
347 348 4.186926 AGATGATGGAGTCGACAATGTTG 58.813 43.478 19.50 0.00 0.00 3.33
348 349 4.437239 GAGATGATGGAGTCGACAATGTT 58.563 43.478 19.50 0.00 0.00 2.71
349 350 3.181471 GGAGATGATGGAGTCGACAATGT 60.181 47.826 19.50 0.33 0.00 2.71
350 351 3.388308 GGAGATGATGGAGTCGACAATG 58.612 50.000 19.50 0.00 0.00 2.82
351 352 2.366916 GGGAGATGATGGAGTCGACAAT 59.633 50.000 19.50 8.23 0.00 2.71
352 353 1.757118 GGGAGATGATGGAGTCGACAA 59.243 52.381 19.50 2.94 0.00 3.18
353 354 1.403814 GGGAGATGATGGAGTCGACA 58.596 55.000 19.50 0.00 0.00 4.35
354 355 0.676736 GGGGAGATGATGGAGTCGAC 59.323 60.000 7.70 7.70 0.00 4.20
355 356 0.558220 AGGGGAGATGATGGAGTCGA 59.442 55.000 0.00 0.00 0.00 4.20
356 357 1.889829 GTAGGGGAGATGATGGAGTCG 59.110 57.143 0.00 0.00 0.00 4.18
357 358 2.630580 GTGTAGGGGAGATGATGGAGTC 59.369 54.545 0.00 0.00 0.00 3.36
358 359 2.248686 AGTGTAGGGGAGATGATGGAGT 59.751 50.000 0.00 0.00 0.00 3.85
359 360 2.896685 GAGTGTAGGGGAGATGATGGAG 59.103 54.545 0.00 0.00 0.00 3.86
360 361 2.753168 CGAGTGTAGGGGAGATGATGGA 60.753 54.545 0.00 0.00 0.00 3.41
361 362 1.615883 CGAGTGTAGGGGAGATGATGG 59.384 57.143 0.00 0.00 0.00 3.51
362 363 1.615883 CCGAGTGTAGGGGAGATGATG 59.384 57.143 0.00 0.00 0.00 3.07
363 364 2.002505 CCGAGTGTAGGGGAGATGAT 57.997 55.000 0.00 0.00 0.00 2.45
364 365 3.515059 CCGAGTGTAGGGGAGATGA 57.485 57.895 0.00 0.00 0.00 2.92
372 373 2.987125 CCCCAACCCGAGTGTAGG 59.013 66.667 0.00 0.00 0.00 3.18
373 374 1.838073 AAGCCCCAACCCGAGTGTAG 61.838 60.000 0.00 0.00 0.00 2.74
374 375 0.544833 TAAGCCCCAACCCGAGTGTA 60.545 55.000 0.00 0.00 0.00 2.90
375 376 1.838073 CTAAGCCCCAACCCGAGTGT 61.838 60.000 0.00 0.00 0.00 3.55
376 377 1.078426 CTAAGCCCCAACCCGAGTG 60.078 63.158 0.00 0.00 0.00 3.51
384 385 0.891904 GGCGTTGTTCTAAGCCCCAA 60.892 55.000 0.80 0.00 43.54 4.12
385 386 1.302993 GGCGTTGTTCTAAGCCCCA 60.303 57.895 0.80 0.00 43.54 4.96
391 392 1.816074 GGTCATGGGCGTTGTTCTAA 58.184 50.000 0.00 0.00 0.00 2.10
393 394 1.671054 CGGTCATGGGCGTTGTTCT 60.671 57.895 0.00 0.00 0.00 3.01
403 404 3.118454 GTGTCGCACCGGTCATGG 61.118 66.667 2.59 0.00 0.00 3.66
408 409 1.863662 CTAGTCTGTGTCGCACCGGT 61.864 60.000 0.00 0.00 32.73 5.28
410 411 1.801913 GCTAGTCTGTGTCGCACCG 60.802 63.158 7.38 2.16 32.73 4.94
412 413 0.456995 GAGGCTAGTCTGTGTCGCAC 60.457 60.000 0.00 3.44 34.56 5.34
413 414 0.893727 TGAGGCTAGTCTGTGTCGCA 60.894 55.000 0.00 0.00 0.00 5.10
416 417 2.103373 TCCATGAGGCTAGTCTGTGTC 58.897 52.381 0.00 0.00 33.74 3.67
419 420 3.445008 TCTTTCCATGAGGCTAGTCTGT 58.555 45.455 0.00 0.00 33.74 3.41
421 422 3.037549 CCTCTTTCCATGAGGCTAGTCT 58.962 50.000 0.00 0.00 43.67 3.24
430 431 3.135161 TCTCCATCCCTCTTTCCATGA 57.865 47.619 0.00 0.00 0.00 3.07
431 432 3.393609 TGATCTCCATCCCTCTTTCCATG 59.606 47.826 0.00 0.00 0.00 3.66
432 433 3.393941 GTGATCTCCATCCCTCTTTCCAT 59.606 47.826 0.00 0.00 0.00 3.41
454 456 2.359354 TTCGTCGGCAACCATGGG 60.359 61.111 18.09 0.00 0.00 4.00
462 464 3.682858 CCTTATCTTTTTCTTCGTCGGCA 59.317 43.478 0.00 0.00 0.00 5.69
472 474 5.062809 CAGCGAGTCACTCCTTATCTTTTTC 59.937 44.000 0.00 0.00 0.00 2.29
479 481 1.115467 CCCAGCGAGTCACTCCTTAT 58.885 55.000 0.00 0.00 0.00 1.73
492 494 5.221048 CCTCAACCTTATATTTTTCCCAGCG 60.221 44.000 0.00 0.00 0.00 5.18
496 498 4.899457 CCCCCTCAACCTTATATTTTTCCC 59.101 45.833 0.00 0.00 0.00 3.97
525 528 4.814294 GTAGGACCCACGCGCCAG 62.814 72.222 5.73 0.00 0.00 4.85
530 533 1.448013 GCTTCAGTAGGACCCACGC 60.448 63.158 0.00 0.00 0.00 5.34
549 552 4.927782 AAGCTCCGCACACGCCAA 62.928 61.111 0.00 0.00 38.22 4.52
576 579 5.504010 CGGATCGAAACAAAACATCCTATGG 60.504 44.000 0.00 0.00 32.24 2.74
581 584 4.616181 ATCGGATCGAAACAAAACATCC 57.384 40.909 0.00 0.00 39.99 3.51
582 585 5.198274 GCTATCGGATCGAAACAAAACATC 58.802 41.667 0.00 0.00 39.99 3.06
583 586 4.634004 TGCTATCGGATCGAAACAAAACAT 59.366 37.500 0.00 0.00 39.99 2.71
584 587 3.997681 TGCTATCGGATCGAAACAAAACA 59.002 39.130 0.00 0.00 39.99 2.83
586 589 3.997681 TGTGCTATCGGATCGAAACAAAA 59.002 39.130 0.00 0.00 39.99 2.44
587 590 3.369756 GTGTGCTATCGGATCGAAACAAA 59.630 43.478 0.00 0.00 39.99 2.83
590 595 1.517276 CGTGTGCTATCGGATCGAAAC 59.483 52.381 0.00 0.00 39.99 2.78
594 599 2.357543 CGCGTGTGCTATCGGATCG 61.358 63.158 0.00 0.00 39.65 3.69
609 614 4.473520 AGATTCAGCCACCCCGCG 62.474 66.667 0.00 0.00 0.00 6.46
614 619 2.548067 CGGGTATACAGATTCAGCCACC 60.548 54.545 5.01 0.00 0.00 4.61
615 620 2.548067 CCGGGTATACAGATTCAGCCAC 60.548 54.545 5.01 0.00 0.00 5.01
616 621 1.691976 CCGGGTATACAGATTCAGCCA 59.308 52.381 5.01 0.00 0.00 4.75
618 623 2.607282 CGACCGGGTATACAGATTCAGC 60.607 54.545 6.32 0.00 0.00 4.26
620 625 1.958579 CCGACCGGGTATACAGATTCA 59.041 52.381 6.32 0.00 0.00 2.57
621 626 1.336609 GCCGACCGGGTATACAGATTC 60.337 57.143 6.32 0.00 38.44 2.52
623 628 1.183676 GGCCGACCGGGTATACAGAT 61.184 60.000 6.32 0.00 38.44 2.90
627 632 2.732658 CTGGCCGACCGGGTATAC 59.267 66.667 6.32 0.00 38.86 1.47
628 633 3.228759 GCTGGCCGACCGGGTATA 61.229 66.667 6.32 0.00 43.31 1.47
635 640 2.514824 GATCTTGGCTGGCCGACC 60.515 66.667 6.91 6.91 39.42 4.79
640 645 0.373716 CGTAAACGATCTTGGCTGGC 59.626 55.000 0.00 0.00 43.02 4.85
670 675 3.010472 TCATATTGGCCCTCCATATGGTG 59.990 47.826 21.28 18.29 43.05 4.17
671 676 3.010584 GTCATATTGGCCCTCCATATGGT 59.989 47.826 21.28 2.08 43.05 3.55
672 677 3.010472 TGTCATATTGGCCCTCCATATGG 59.990 47.826 16.25 16.25 43.05 2.74
673 678 4.305539 TGTCATATTGGCCCTCCATATG 57.694 45.455 0.00 7.57 43.05 1.78
674 679 4.354987 AGTTGTCATATTGGCCCTCCATAT 59.645 41.667 0.00 0.00 43.05 1.78
675 680 3.721575 AGTTGTCATATTGGCCCTCCATA 59.278 43.478 0.00 0.00 43.05 2.74
676 681 2.515429 AGTTGTCATATTGGCCCTCCAT 59.485 45.455 0.00 0.00 43.05 3.41
677 682 1.922447 AGTTGTCATATTGGCCCTCCA 59.078 47.619 0.00 0.00 41.55 3.86
678 683 2.689983 CAAGTTGTCATATTGGCCCTCC 59.310 50.000 0.00 0.00 0.00 4.30
679 684 2.099756 GCAAGTTGTCATATTGGCCCTC 59.900 50.000 0.00 0.00 0.00 4.30
680 685 2.102578 GCAAGTTGTCATATTGGCCCT 58.897 47.619 0.00 0.00 0.00 5.19
681 686 2.102578 AGCAAGTTGTCATATTGGCCC 58.897 47.619 0.00 0.00 0.00 5.80
682 687 4.199310 TCTAGCAAGTTGTCATATTGGCC 58.801 43.478 4.48 0.00 0.00 5.36
683 688 6.382869 AATCTAGCAAGTTGTCATATTGGC 57.617 37.500 4.48 0.00 0.00 4.52
684 689 6.694411 GCAAATCTAGCAAGTTGTCATATTGG 59.306 38.462 4.48 0.00 0.00 3.16
692 697 6.036517 CGATTAGAGCAAATCTAGCAAGTTGT 59.963 38.462 4.48 0.00 41.57 3.32
694 699 5.007136 GCGATTAGAGCAAATCTAGCAAGTT 59.993 40.000 0.00 0.00 41.57 2.66
717 722 1.153804 GGTCTTCCTCTTCGACGGC 60.154 63.158 0.00 0.00 0.00 5.68
722 727 1.269998 ACTTCACGGTCTTCCTCTTCG 59.730 52.381 0.00 0.00 0.00 3.79
726 731 6.204108 TGAATTTAAACTTCACGGTCTTCCTC 59.796 38.462 8.21 0.00 0.00 3.71
727 732 6.059484 TGAATTTAAACTTCACGGTCTTCCT 58.941 36.000 8.21 0.00 0.00 3.36
729 734 8.797266 ATTTGAATTTAAACTTCACGGTCTTC 57.203 30.769 10.61 0.30 32.57 2.87
730 735 9.594478 AAATTTGAATTTAAACTTCACGGTCTT 57.406 25.926 10.61 0.00 36.88 3.01
732 737 9.026074 TGAAATTTGAATTTAAACTTCACGGTC 57.974 29.630 13.53 8.01 38.64 4.79
733 738 8.934507 TGAAATTTGAATTTAAACTTCACGGT 57.065 26.923 13.53 0.00 38.64 4.83
764 770 2.795329 GGCCTCTTCCTTCATGTTTCA 58.205 47.619 0.00 0.00 0.00 2.69
772 778 1.003233 AAGCACGGCCTCTTCCTTC 60.003 57.895 0.00 0.00 0.00 3.46
774 780 1.893919 GAGAAGCACGGCCTCTTCCT 61.894 60.000 19.30 10.92 39.48 3.36
776 782 1.448717 GGAGAAGCACGGCCTCTTC 60.449 63.158 16.73 16.73 39.08 2.87
778 784 2.284258 AGGAGAAGCACGGCCTCT 60.284 61.111 0.00 0.00 31.42 3.69
779 785 2.125350 CAGGAGAAGCACGGCCTC 60.125 66.667 0.00 0.00 0.00 4.70
780 786 3.710722 CCAGGAGAAGCACGGCCT 61.711 66.667 0.00 0.00 0.00 5.19
800 815 1.134560 GGTCGTACCATCTGACACTCC 59.865 57.143 1.17 0.00 38.42 3.85
812 827 2.047939 CCAACCACGGGTCGTACC 60.048 66.667 0.00 0.00 38.32 3.34
866 881 3.506312 GAGAGAGAGAGAGCGCGCG 62.506 68.421 28.44 28.44 0.00 6.86
867 882 2.105960 GAGAGAGAGAGAGAGCGCGC 62.106 65.000 26.66 26.66 0.00 6.86
868 883 0.530650 AGAGAGAGAGAGAGAGCGCG 60.531 60.000 0.00 0.00 0.00 6.86
869 884 0.940126 CAGAGAGAGAGAGAGAGCGC 59.060 60.000 0.00 0.00 0.00 5.92
870 885 2.159043 AGACAGAGAGAGAGAGAGAGCG 60.159 54.545 0.00 0.00 0.00 5.03
871 886 3.133721 AGAGACAGAGAGAGAGAGAGAGC 59.866 52.174 0.00 0.00 0.00 4.09
872 887 4.648762 AGAGAGACAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
873 888 4.614475 AGAGAGACAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
874 889 4.648762 AGAGAGAGACAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
875 890 4.614475 AGAGAGAGACAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
876 891 4.648762 AGAGAGAGAGACAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
877 892 4.614475 AGAGAGAGAGACAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
878 893 4.648762 AGAGAGAGAGAGACAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
879 894 4.614475 AGAGAGAGAGAGACAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
880 895 4.648762 AGAGAGAGAGAGAGACAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
881 896 4.614475 AGAGAGAGAGAGAGACAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
882 897 4.648762 AGAGAGAGAGAGAGAGACAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
883 898 4.614475 AGAGAGAGAGAGAGAGACAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
884 899 4.648762 AGAGAGAGAGAGAGAGAGACAGAG 59.351 50.000 0.00 0.00 0.00 3.35
885 900 4.614475 AGAGAGAGAGAGAGAGAGACAGA 58.386 47.826 0.00 0.00 0.00 3.41
886 901 4.202202 GGAGAGAGAGAGAGAGAGAGACAG 60.202 54.167 0.00 0.00 0.00 3.51
887 902 3.706594 GGAGAGAGAGAGAGAGAGAGACA 59.293 52.174 0.00 0.00 0.00 3.41
888 903 3.070302 GGGAGAGAGAGAGAGAGAGAGAC 59.930 56.522 0.00 0.00 0.00 3.36
889 904 3.309296 GGGAGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
890 905 2.036475 CGGGAGAGAGAGAGAGAGAGAG 59.964 59.091 0.00 0.00 0.00 3.20
891 906 2.039418 CGGGAGAGAGAGAGAGAGAGA 58.961 57.143 0.00 0.00 0.00 3.10
976 1011 1.433199 CCTCCCTCCCCCTTTTTCTTT 59.567 52.381 0.00 0.00 0.00 2.52
1206 1261 1.407712 GGTTAAGATGCGGGCCTTACA 60.408 52.381 0.84 0.00 0.00 2.41
1213 1268 1.681264 GGGATTTGGTTAAGATGCGGG 59.319 52.381 0.00 0.00 0.00 6.13
1236 1291 0.930726 GAGAGAGAGGGAGAGGGGAA 59.069 60.000 0.00 0.00 0.00 3.97
1237 1292 0.996762 GGAGAGAGAGGGAGAGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
1250 1305 1.377366 GAGACATGACGCCGGAGAGA 61.377 60.000 13.83 0.00 0.00 3.10
1263 1318 3.009916 AGCAAATGGAGAGTTGGAGACAT 59.990 43.478 0.00 0.00 42.32 3.06
1267 1328 2.005451 CGAGCAAATGGAGAGTTGGAG 58.995 52.381 0.00 0.00 0.00 3.86
1272 1333 4.192000 CGCGAGCAAATGGAGAGT 57.808 55.556 0.00 0.00 0.00 3.24
1284 1345 1.724234 GTCAGATCTAGCGCGCGAG 60.724 63.158 37.18 31.86 0.00 5.03
1301 1362 3.617143 GAAACCCTAAGGCCGCGGT 62.617 63.158 28.70 9.89 36.11 5.68
1331 1392 2.038387 AAATCCGGGGAATCGAAGTG 57.962 50.000 0.00 0.00 0.00 3.16
1332 1393 2.365582 CAAAATCCGGGGAATCGAAGT 58.634 47.619 0.00 0.00 0.00 3.01
1335 1396 3.487576 CCAAAATCCGGGGAATCGA 57.512 52.632 0.00 0.00 0.00 3.59
1584 1728 4.058817 GACACTTTCAGTCAGGAATCGTT 58.941 43.478 0.00 0.00 36.06 3.85
1631 1781 1.003118 ACGTCCAGCTCCTTTGCAATA 59.997 47.619 0.00 0.00 34.99 1.90
1760 1910 2.768527 GACATCCATCTTGACCTCCTCA 59.231 50.000 0.00 0.00 0.00 3.86
1909 2102 1.153389 ATGATGGCATGCGACACGA 60.153 52.632 12.44 0.00 27.59 4.35
2309 3445 3.215151 TCACTCCTATGAGACGGCTAAG 58.785 50.000 0.00 0.00 41.42 2.18
3207 5918 5.011090 AGAAAGGCTTCTTTGGTTGTTTC 57.989 39.130 0.00 0.00 38.89 2.78
3425 6254 0.393820 AACAATGTTGGGCTGGCAAG 59.606 50.000 0.00 0.00 0.00 4.01
3428 6257 1.202348 GAGTAACAATGTTGGGCTGGC 59.798 52.381 9.15 0.00 0.00 4.85
3900 6800 7.012610 AGCACAGCATTTTATTTTTCTTTTGCT 59.987 29.630 0.00 0.00 39.61 3.91
4924 15490 7.498900 CCAAGGTGTGAACTAATGCTAATGATA 59.501 37.037 0.00 0.00 0.00 2.15
5072 15653 4.023536 CCTAGCTTTGGCGTGAAACTTAAA 60.024 41.667 0.00 0.00 44.37 1.52
5237 15830 2.020720 AGCGGTGTGTCATTTGTTTCA 58.979 42.857 0.00 0.00 0.00 2.69
5238 15831 2.384382 CAGCGGTGTGTCATTTGTTTC 58.616 47.619 6.41 0.00 0.00 2.78
5239 15832 1.066908 CCAGCGGTGTGTCATTTGTTT 59.933 47.619 14.40 0.00 0.00 2.83
5299 15909 2.034124 AGTGCCTGCAACAGACAAAAT 58.966 42.857 0.00 0.00 32.44 1.82
6239 19675 2.088423 ACAGTGTCCACGCAAAAGAAA 58.912 42.857 0.00 0.00 36.20 2.52
6240 19676 1.745232 ACAGTGTCCACGCAAAAGAA 58.255 45.000 0.00 0.00 36.20 2.52
6241 19677 1.745232 AACAGTGTCCACGCAAAAGA 58.255 45.000 0.00 0.00 36.20 2.52
6291 19727 8.522003 AGACTAACTATGATGAGCATACTGATG 58.478 37.037 0.00 0.00 38.44 3.07
6292 19728 8.522003 CAGACTAACTATGATGAGCATACTGAT 58.478 37.037 0.00 0.00 38.44 2.90
6294 19730 7.880105 TCAGACTAACTATGATGAGCATACTG 58.120 38.462 0.00 0.00 38.44 2.74
6295 19731 8.648698 ATCAGACTAACTATGATGAGCATACT 57.351 34.615 0.00 0.00 38.44 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.