Multiple sequence alignment - TraesCS1D01G041400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G041400 chr1D 100.000 5911 0 0 1 5911 20052335 20058245 0.000000e+00 10916
1 TraesCS1D01G041400 chr1D 91.899 790 49 8 5024 5810 20178753 20179530 0.000000e+00 1090
2 TraesCS1D01G041400 chr1D 86.130 447 58 4 4270 4714 20056475 20056919 4.140000e-131 479
3 TraesCS1D01G041400 chr1D 86.130 447 58 4 4141 4585 20056604 20057048 4.140000e-131 479
4 TraesCS1D01G041400 chr1A 94.027 2411 111 12 2705 5106 22289915 22287529 0.000000e+00 3624
5 TraesCS1D01G041400 chr1A 86.270 1646 129 54 208 1822 22292343 22290764 0.000000e+00 1698
6 TraesCS1D01G041400 chr1A 94.538 476 22 3 1933 2406 22290769 22290296 0.000000e+00 732
7 TraesCS1D01G041400 chr1A 87.816 632 53 11 5197 5814 22287318 22286697 0.000000e+00 719
8 TraesCS1D01G041400 chr1A 87.302 441 52 4 4147 4585 22288362 22287924 8.840000e-138 501
9 TraesCS1D01G041400 chr1A 86.168 441 57 4 4276 4714 22288491 22288053 1.930000e-129 473
10 TraesCS1D01G041400 chr1B 93.899 2049 96 11 3066 5109 33978722 33976698 0.000000e+00 3064
11 TraesCS1D01G041400 chr1B 89.299 2224 132 48 267 2423 33981717 33979533 0.000000e+00 2691
12 TraesCS1D01G041400 chr1B 92.476 638 36 6 4945 5577 33951085 33950455 0.000000e+00 902
13 TraesCS1D01G041400 chr1B 85.056 716 55 16 5135 5814 33926181 33925482 0.000000e+00 682
14 TraesCS1D01G041400 chr1B 87.302 441 52 4 4147 4585 33977530 33977092 8.840000e-138 501
15 TraesCS1D01G041400 chr1B 91.899 358 29 0 2705 3062 33979186 33978829 8.840000e-138 501
16 TraesCS1D01G041400 chr1B 86.168 441 57 4 4276 4714 33977659 33977221 1.930000e-129 473
17 TraesCS1D01G041400 chr1B 83.544 316 46 6 4144 4456 33977404 33977092 2.080000e-74 291
18 TraesCS1D01G041400 chr1B 81.845 336 52 8 4385 4714 33977682 33977350 2.100000e-69 274
19 TraesCS1D01G041400 chr5D 85.009 587 41 31 133 691 189930483 189929916 2.410000e-153 553
20 TraesCS1D01G041400 chr5D 97.590 166 4 0 2542 2707 60140927 60140762 9.700000e-73 285
21 TraesCS1D01G041400 chr5D 93.182 176 11 1 2534 2708 498721898 498722073 2.110000e-64 257
22 TraesCS1D01G041400 chr2D 95.808 167 6 1 2542 2707 363972086 363972252 9.760000e-68 268
23 TraesCS1D01G041400 chr2D 91.398 186 15 1 2524 2709 402716915 402716731 2.730000e-63 254
24 TraesCS1D01G041400 chr3D 95.732 164 7 0 2542 2705 577904078 577904241 1.260000e-66 265
25 TraesCS1D01G041400 chr3D 94.611 167 8 1 2542 2707 300567784 300567950 2.110000e-64 257
26 TraesCS1D01G041400 chr7D 94.643 168 7 1 2540 2707 535594483 535594318 5.880000e-65 259
27 TraesCS1D01G041400 chr6D 94.578 166 9 0 2541 2706 90890281 90890446 2.110000e-64 257
28 TraesCS1D01G041400 chr7A 91.667 180 13 2 2540 2718 652717658 652717480 1.270000e-61 248
29 TraesCS1D01G041400 chr7A 76.754 228 29 13 256 483 580368112 580367909 8.100000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G041400 chr1D 20052335 20058245 5910 False 3958.000000 10916 90.753333 1 5911 3 chr1D.!!$F2 5910
1 TraesCS1D01G041400 chr1D 20178753 20179530 777 False 1090.000000 1090 91.899000 5024 5810 1 chr1D.!!$F1 786
2 TraesCS1D01G041400 chr1A 22286697 22292343 5646 True 1291.166667 3624 89.353500 208 5814 6 chr1A.!!$R1 5606
3 TraesCS1D01G041400 chr1B 33976698 33981717 5019 True 1113.571429 3064 87.708000 267 5109 7 chr1B.!!$R3 4842
4 TraesCS1D01G041400 chr1B 33950455 33951085 630 True 902.000000 902 92.476000 4945 5577 1 chr1B.!!$R2 632
5 TraesCS1D01G041400 chr1B 33925482 33926181 699 True 682.000000 682 85.056000 5135 5814 1 chr1B.!!$R1 679
6 TraesCS1D01G041400 chr5D 189929916 189930483 567 True 553.000000 553 85.009000 133 691 1 chr5D.!!$R2 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 954 0.094730 GAGCCGCATGTTTCGTGTAC 59.905 55.0 0.00 0.0 0.00 2.90 F
1445 1539 0.038526 GCGAACAAGAAGTCCGAGGA 60.039 55.0 0.00 0.0 0.00 3.71 F
1648 1745 0.103937 GTCTGATGAAGAGGCGGAGG 59.896 60.0 0.00 0.0 34.84 4.30 F
3510 3986 0.108138 GTACCACCGCAAGATGCTCT 60.108 55.0 0.43 0.0 42.25 4.09 F
3511 3987 0.613260 TACCACCGCAAGATGCTCTT 59.387 50.0 0.43 0.0 42.25 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2731 3085 0.035152 TGATCTGCACCATGTCCACC 60.035 55.0 0.00 0.0 0.00 4.61 R
2734 3088 0.107312 AGCTGATCTGCACCATGTCC 60.107 55.0 24.33 0.0 34.99 4.02 R
3626 4102 0.035176 GAGCCAATGCCCTTTTTGCA 59.965 50.0 0.00 0.0 43.97 4.08 R
4373 4850 0.250252 TCTTCGATGCTGTTGTGGCA 60.250 50.0 0.00 0.0 44.05 4.92 R
5454 6095 1.458639 GCACTTTGCTTCTGCCTGGT 61.459 55.0 0.00 0.0 40.96 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.865865 GTCAGGCTTGAACTCAACGA 58.134 50.000 0.00 0.00 34.49 3.85
20 21 2.210116 GTCAGGCTTGAACTCAACGAA 58.790 47.619 0.00 0.00 34.49 3.85
21 22 2.612212 GTCAGGCTTGAACTCAACGAAA 59.388 45.455 0.00 0.00 34.49 3.46
22 23 3.064820 GTCAGGCTTGAACTCAACGAAAA 59.935 43.478 0.00 0.00 34.49 2.29
23 24 3.692101 TCAGGCTTGAACTCAACGAAAAA 59.308 39.130 0.00 0.00 0.00 1.94
54 55 8.712228 AAAGATCCATATAACATTCTTTCCCC 57.288 34.615 0.00 0.00 29.87 4.81
55 56 7.406620 AGATCCATATAACATTCTTTCCCCA 57.593 36.000 0.00 0.00 0.00 4.96
56 57 7.234355 AGATCCATATAACATTCTTTCCCCAC 58.766 38.462 0.00 0.00 0.00 4.61
57 58 6.334378 TCCATATAACATTCTTTCCCCACA 57.666 37.500 0.00 0.00 0.00 4.17
58 59 6.736581 TCCATATAACATTCTTTCCCCACAA 58.263 36.000 0.00 0.00 0.00 3.33
59 60 7.185565 TCCATATAACATTCTTTCCCCACAAA 58.814 34.615 0.00 0.00 0.00 2.83
60 61 7.123547 TCCATATAACATTCTTTCCCCACAAAC 59.876 37.037 0.00 0.00 0.00 2.93
61 62 5.738619 ATAACATTCTTTCCCCACAAACC 57.261 39.130 0.00 0.00 0.00 3.27
62 63 3.328535 ACATTCTTTCCCCACAAACCT 57.671 42.857 0.00 0.00 0.00 3.50
63 64 4.463050 ACATTCTTTCCCCACAAACCTA 57.537 40.909 0.00 0.00 0.00 3.08
64 65 4.810345 ACATTCTTTCCCCACAAACCTAA 58.190 39.130 0.00 0.00 0.00 2.69
65 66 5.212745 ACATTCTTTCCCCACAAACCTAAA 58.787 37.500 0.00 0.00 0.00 1.85
66 67 5.663556 ACATTCTTTCCCCACAAACCTAAAA 59.336 36.000 0.00 0.00 0.00 1.52
67 68 5.601583 TTCTTTCCCCACAAACCTAAAAC 57.398 39.130 0.00 0.00 0.00 2.43
68 69 3.962063 TCTTTCCCCACAAACCTAAAACC 59.038 43.478 0.00 0.00 0.00 3.27
69 70 1.984066 TCCCCACAAACCTAAAACCG 58.016 50.000 0.00 0.00 0.00 4.44
70 71 0.315886 CCCCACAAACCTAAAACCGC 59.684 55.000 0.00 0.00 0.00 5.68
71 72 1.324383 CCCACAAACCTAAAACCGCT 58.676 50.000 0.00 0.00 0.00 5.52
72 73 2.506444 CCCACAAACCTAAAACCGCTA 58.494 47.619 0.00 0.00 0.00 4.26
73 74 2.885894 CCCACAAACCTAAAACCGCTAA 59.114 45.455 0.00 0.00 0.00 3.09
74 75 3.508402 CCCACAAACCTAAAACCGCTAAT 59.492 43.478 0.00 0.00 0.00 1.73
75 76 4.021807 CCCACAAACCTAAAACCGCTAATT 60.022 41.667 0.00 0.00 0.00 1.40
76 77 5.158494 CCACAAACCTAAAACCGCTAATTC 58.842 41.667 0.00 0.00 0.00 2.17
77 78 4.849383 CACAAACCTAAAACCGCTAATTCG 59.151 41.667 0.00 0.00 0.00 3.34
78 79 4.516321 ACAAACCTAAAACCGCTAATTCGT 59.484 37.500 0.00 0.00 0.00 3.85
79 80 5.700373 ACAAACCTAAAACCGCTAATTCGTA 59.300 36.000 0.00 0.00 0.00 3.43
80 81 6.372381 ACAAACCTAAAACCGCTAATTCGTAT 59.628 34.615 0.00 0.00 0.00 3.06
81 82 6.990341 AACCTAAAACCGCTAATTCGTATT 57.010 33.333 0.00 0.00 0.00 1.89
82 83 6.990341 ACCTAAAACCGCTAATTCGTATTT 57.010 33.333 0.00 0.00 0.00 1.40
83 84 7.381766 ACCTAAAACCGCTAATTCGTATTTT 57.618 32.000 0.00 0.00 33.47 1.82
84 85 7.466805 ACCTAAAACCGCTAATTCGTATTTTC 58.533 34.615 0.00 0.00 32.19 2.29
85 86 7.335171 ACCTAAAACCGCTAATTCGTATTTTCT 59.665 33.333 0.00 0.00 32.19 2.52
86 87 7.849515 CCTAAAACCGCTAATTCGTATTTTCTC 59.150 37.037 0.00 0.00 32.19 2.87
87 88 6.730960 AAACCGCTAATTCGTATTTTCTCA 57.269 33.333 0.00 0.00 0.00 3.27
88 89 6.920569 AACCGCTAATTCGTATTTTCTCAT 57.079 33.333 0.00 0.00 0.00 2.90
89 90 6.526566 ACCGCTAATTCGTATTTTCTCATC 57.473 37.500 0.00 0.00 0.00 2.92
90 91 5.465724 ACCGCTAATTCGTATTTTCTCATCC 59.534 40.000 0.00 0.00 0.00 3.51
91 92 5.465390 CCGCTAATTCGTATTTTCTCATCCA 59.535 40.000 0.00 0.00 0.00 3.41
92 93 6.018262 CCGCTAATTCGTATTTTCTCATCCAA 60.018 38.462 0.00 0.00 0.00 3.53
93 94 6.846283 CGCTAATTCGTATTTTCTCATCCAAC 59.154 38.462 0.00 0.00 0.00 3.77
94 95 7.132863 GCTAATTCGTATTTTCTCATCCAACC 58.867 38.462 0.00 0.00 0.00 3.77
95 96 7.201696 GCTAATTCGTATTTTCTCATCCAACCA 60.202 37.037 0.00 0.00 0.00 3.67
96 97 6.683974 ATTCGTATTTTCTCATCCAACCAG 57.316 37.500 0.00 0.00 0.00 4.00
97 98 5.414789 TCGTATTTTCTCATCCAACCAGA 57.585 39.130 0.00 0.00 0.00 3.86
98 99 5.175859 TCGTATTTTCTCATCCAACCAGAC 58.824 41.667 0.00 0.00 0.00 3.51
99 100 4.935205 CGTATTTTCTCATCCAACCAGACA 59.065 41.667 0.00 0.00 0.00 3.41
100 101 5.411361 CGTATTTTCTCATCCAACCAGACAA 59.589 40.000 0.00 0.00 0.00 3.18
101 102 6.072728 CGTATTTTCTCATCCAACCAGACAAA 60.073 38.462 0.00 0.00 0.00 2.83
102 103 6.923199 ATTTTCTCATCCAACCAGACAAAT 57.077 33.333 0.00 0.00 0.00 2.32
103 104 8.956426 GTATTTTCTCATCCAACCAGACAAATA 58.044 33.333 0.00 0.00 0.00 1.40
104 105 7.831691 TTTTCTCATCCAACCAGACAAATAA 57.168 32.000 0.00 0.00 0.00 1.40
105 106 7.831691 TTTCTCATCCAACCAGACAAATAAA 57.168 32.000 0.00 0.00 0.00 1.40
106 107 7.452880 TTCTCATCCAACCAGACAAATAAAG 57.547 36.000 0.00 0.00 0.00 1.85
107 108 5.945784 TCTCATCCAACCAGACAAATAAAGG 59.054 40.000 0.00 0.00 0.00 3.11
108 109 5.016173 TCATCCAACCAGACAAATAAAGGG 58.984 41.667 0.00 0.00 0.00 3.95
109 110 4.463050 TCCAACCAGACAAATAAAGGGT 57.537 40.909 0.00 0.00 0.00 4.34
110 111 4.810345 TCCAACCAGACAAATAAAGGGTT 58.190 39.130 0.00 0.00 39.08 4.11
111 112 5.212745 TCCAACCAGACAAATAAAGGGTTT 58.787 37.500 0.00 0.00 36.54 3.27
112 113 5.663556 TCCAACCAGACAAATAAAGGGTTTT 59.336 36.000 0.00 0.00 36.54 2.43
113 114 5.989168 CCAACCAGACAAATAAAGGGTTTTC 59.011 40.000 0.00 0.00 36.54 2.29
114 115 6.407525 CCAACCAGACAAATAAAGGGTTTTCA 60.408 38.462 0.00 0.00 36.54 2.69
115 116 6.156748 ACCAGACAAATAAAGGGTTTTCAC 57.843 37.500 0.00 0.00 0.00 3.18
116 117 5.897250 ACCAGACAAATAAAGGGTTTTCACT 59.103 36.000 0.00 0.00 33.35 3.41
117 118 7.064229 ACCAGACAAATAAAGGGTTTTCACTA 58.936 34.615 0.00 0.00 30.73 2.74
118 119 7.728532 ACCAGACAAATAAAGGGTTTTCACTAT 59.271 33.333 0.00 0.00 30.73 2.12
119 120 9.238368 CCAGACAAATAAAGGGTTTTCACTATA 57.762 33.333 0.00 0.00 30.73 1.31
121 122 9.802039 AGACAAATAAAGGGTTTTCACTATACA 57.198 29.630 0.00 0.00 30.73 2.29
123 124 9.802039 ACAAATAAAGGGTTTTCACTATACAGA 57.198 29.630 0.00 0.00 30.73 3.41
129 130 9.449719 AAAGGGTTTTCACTATACAGAGTAATG 57.550 33.333 0.00 0.00 30.73 1.90
130 131 7.048512 AGGGTTTTCACTATACAGAGTAATGC 58.951 38.462 0.00 0.00 0.00 3.56
131 132 6.821665 GGGTTTTCACTATACAGAGTAATGCA 59.178 38.462 0.00 0.00 0.00 3.96
132 133 7.011482 GGGTTTTCACTATACAGAGTAATGCAG 59.989 40.741 0.00 0.00 0.00 4.41
133 134 7.764443 GGTTTTCACTATACAGAGTAATGCAGA 59.236 37.037 0.00 0.00 0.00 4.26
134 135 8.812329 GTTTTCACTATACAGAGTAATGCAGAG 58.188 37.037 0.00 0.00 0.00 3.35
135 136 6.078202 TCACTATACAGAGTAATGCAGAGC 57.922 41.667 0.00 0.00 0.00 4.09
136 137 4.914504 CACTATACAGAGTAATGCAGAGCG 59.085 45.833 0.00 0.00 0.00 5.03
142 143 4.806247 ACAGAGTAATGCAGAGCGATAAAC 59.194 41.667 0.00 0.00 0.00 2.01
148 149 2.337583 TGCAGAGCGATAAACACTGAC 58.662 47.619 0.00 0.00 0.00 3.51
151 152 2.848887 CAGAGCGATAAACACTGACGAG 59.151 50.000 0.00 0.00 0.00 4.18
154 155 3.756069 AGCGATAAACACTGACGAGTAC 58.244 45.455 0.00 0.00 0.00 2.73
163 164 1.053048 CTGACGAGTACAACAGCACG 58.947 55.000 0.00 0.00 0.00 5.34
164 165 0.318360 TGACGAGTACAACAGCACGG 60.318 55.000 0.00 0.00 0.00 4.94
165 166 1.615107 GACGAGTACAACAGCACGGC 61.615 60.000 0.00 0.00 0.00 5.68
166 167 1.663388 CGAGTACAACAGCACGGCA 60.663 57.895 0.00 0.00 0.00 5.69
167 168 1.860078 GAGTACAACAGCACGGCAC 59.140 57.895 0.00 0.00 0.00 5.01
181 182 1.675641 GGCACACCCAAGCTACTGG 60.676 63.158 0.00 0.00 36.10 4.00
182 183 2.335712 GCACACCCAAGCTACTGGC 61.336 63.158 0.00 0.00 42.19 4.85
190 191 1.015109 CAAGCTACTGGCATCAGCTG 58.985 55.000 19.90 7.63 44.70 4.24
191 192 0.107312 AAGCTACTGGCATCAGCTGG 60.107 55.000 19.90 0.00 44.70 4.85
194 195 0.179062 CTACTGGCATCAGCTGGGAC 60.179 60.000 15.13 9.63 44.59 4.46
205 206 0.538057 AGCTGGGACACACATGGTTG 60.538 55.000 0.00 0.00 0.00 3.77
246 255 4.104776 CACGGCATTGATTATGAACAACC 58.895 43.478 0.00 0.00 36.26 3.77
247 256 3.181501 ACGGCATTGATTATGAACAACCG 60.182 43.478 7.61 7.61 39.66 4.44
248 257 3.064682 CGGCATTGATTATGAACAACCGA 59.935 43.478 4.31 0.00 37.63 4.69
249 258 4.601019 GGCATTGATTATGAACAACCGAG 58.399 43.478 0.00 0.00 36.26 4.63
250 259 4.498009 GGCATTGATTATGAACAACCGAGG 60.498 45.833 0.00 0.00 36.26 4.63
251 260 4.335315 GCATTGATTATGAACAACCGAGGA 59.665 41.667 0.00 0.00 36.26 3.71
252 261 5.009010 GCATTGATTATGAACAACCGAGGAT 59.991 40.000 0.00 0.00 36.26 3.24
253 262 6.460123 GCATTGATTATGAACAACCGAGGATT 60.460 38.462 0.00 0.00 36.26 3.01
263 272 2.225068 ACCGAGGATTGATTGCTACG 57.775 50.000 0.00 0.00 0.00 3.51
299 310 1.117150 GCACTGGATGGCAAATGGAT 58.883 50.000 0.00 0.00 0.00 3.41
312 323 4.381932 GGCAAATGGATAACAACAGGAAGG 60.382 45.833 0.00 0.00 0.00 3.46
314 325 5.127682 GCAAATGGATAACAACAGGAAGGAT 59.872 40.000 0.00 0.00 0.00 3.24
315 326 6.567050 CAAATGGATAACAACAGGAAGGATG 58.433 40.000 0.00 0.00 0.00 3.51
318 329 4.080356 TGGATAACAACAGGAAGGATGAGG 60.080 45.833 0.00 0.00 0.00 3.86
402 420 4.389576 GGCACGCCTGCAGAAACG 62.390 66.667 17.39 17.91 46.28 3.60
439 467 2.275318 CCAGGCATCGAGAAGAGAAAC 58.725 52.381 0.00 0.00 0.00 2.78
450 483 1.663135 GAAGAGAAACGGCAGCAGATC 59.337 52.381 0.00 0.00 0.00 2.75
463 496 1.167155 GCAGATCGCGAGGAGGAGTA 61.167 60.000 16.66 0.00 0.00 2.59
464 497 0.871722 CAGATCGCGAGGAGGAGTAG 59.128 60.000 16.66 0.00 0.00 2.57
465 498 0.250553 AGATCGCGAGGAGGAGTAGG 60.251 60.000 16.66 0.00 0.00 3.18
466 499 0.250381 GATCGCGAGGAGGAGTAGGA 60.250 60.000 16.66 0.00 0.00 2.94
467 500 0.183014 ATCGCGAGGAGGAGTAGGAA 59.817 55.000 16.66 0.00 0.00 3.36
468 501 0.747283 TCGCGAGGAGGAGTAGGAAC 60.747 60.000 3.71 0.00 0.00 3.62
477 510 1.291335 AGGAGTAGGAACGGAGGGAAT 59.709 52.381 0.00 0.00 0.00 3.01
478 511 1.413077 GGAGTAGGAACGGAGGGAATG 59.587 57.143 0.00 0.00 0.00 2.67
782 819 2.508439 CCCCCGTCATCGTGTTCG 60.508 66.667 0.00 0.00 38.55 3.95
786 823 1.154016 CCGTCATCGTGTTCGCTCT 60.154 57.895 0.00 0.00 36.96 4.09
787 824 1.406219 CCGTCATCGTGTTCGCTCTG 61.406 60.000 0.00 0.00 36.96 3.35
826 871 3.534056 GCGGCGGCTAGGGTAAGA 61.534 66.667 9.78 0.00 35.83 2.10
827 872 2.728817 CGGCGGCTAGGGTAAGAG 59.271 66.667 7.61 0.00 0.00 2.85
833 886 1.334160 GGCTAGGGTAAGAGGAGAGC 58.666 60.000 0.00 0.00 0.00 4.09
834 887 1.133294 GGCTAGGGTAAGAGGAGAGCT 60.133 57.143 0.00 0.00 0.00 4.09
885 948 4.179579 GGCCGAGCCGCATGTTTC 62.180 66.667 0.00 0.00 39.62 2.78
886 949 4.520846 GCCGAGCCGCATGTTTCG 62.521 66.667 0.00 0.00 0.00 3.46
889 952 2.667318 CGAGCCGCATGTTTCGTGT 61.667 57.895 0.00 0.00 0.00 4.49
891 954 0.094730 GAGCCGCATGTTTCGTGTAC 59.905 55.000 0.00 0.00 0.00 2.90
913 980 2.515398 CATATCAGCCCGGCCCAA 59.485 61.111 5.55 0.00 0.00 4.12
933 1000 3.814005 ATATAAACCTTGCCGTCTCGT 57.186 42.857 0.00 0.00 0.00 4.18
934 1001 2.005971 ATAAACCTTGCCGTCTCGTC 57.994 50.000 0.00 0.00 0.00 4.20
935 1002 0.963962 TAAACCTTGCCGTCTCGTCT 59.036 50.000 0.00 0.00 0.00 4.18
936 1003 0.319641 AAACCTTGCCGTCTCGTCTC 60.320 55.000 0.00 0.00 0.00 3.36
937 1004 2.202492 CCTTGCCGTCTCGTCTCG 60.202 66.667 0.00 0.00 0.00 4.04
1197 1273 1.139947 GAAGGCGTCTCCGGAGAAG 59.860 63.158 34.71 34.71 39.48 2.85
1443 1537 1.344942 CCGCGAACAAGAAGTCCGAG 61.345 60.000 8.23 0.00 0.00 4.63
1445 1539 0.038526 GCGAACAAGAAGTCCGAGGA 60.039 55.000 0.00 0.00 0.00 3.71
1473 1567 1.303970 GAAGCAGGGCCTTGAAGCT 60.304 57.895 20.85 6.83 37.08 3.74
1485 1579 0.601046 TTGAAGCTGACGGTGCTGAG 60.601 55.000 0.00 0.00 41.03 3.35
1502 1596 2.039624 GGACCTGGAGGAGCTGGA 59.960 66.667 0.00 0.00 38.94 3.86
1596 1693 1.286553 GAGAAGAGGAGGGTCAGGAGA 59.713 57.143 0.00 0.00 0.00 3.71
1638 1735 3.067106 GGCGAACAAGAAGTCTGATGAA 58.933 45.455 0.00 0.00 0.00 2.57
1648 1745 0.103937 GTCTGATGAAGAGGCGGAGG 59.896 60.000 0.00 0.00 34.84 4.30
1717 1814 2.028385 AGGTGAGTTAACGCTCCGAATT 60.028 45.455 20.15 4.87 35.06 2.17
1718 1815 2.740447 GGTGAGTTAACGCTCCGAATTT 59.260 45.455 13.51 0.00 34.74 1.82
1719 1816 3.424433 GGTGAGTTAACGCTCCGAATTTG 60.424 47.826 13.51 0.00 34.74 2.32
1720 1817 2.739913 TGAGTTAACGCTCCGAATTTGG 59.260 45.455 10.78 5.22 34.74 3.28
1721 1818 2.740447 GAGTTAACGCTCCGAATTTGGT 59.260 45.455 11.68 0.00 0.00 3.67
1722 1819 2.740447 AGTTAACGCTCCGAATTTGGTC 59.260 45.455 11.68 4.44 0.00 4.02
1723 1820 1.352114 TAACGCTCCGAATTTGGTCG 58.648 50.000 20.06 20.06 40.77 4.79
1726 1823 1.006832 CGCTCCGAATTTGGTCGAAT 58.993 50.000 18.13 0.00 43.86 3.34
1806 1903 7.559590 AGGAAATGTGTTGAACTCTATATGC 57.440 36.000 0.00 0.00 0.00 3.14
1828 1927 0.890542 AGATGCCGTTGCTGCAAAGA 60.891 50.000 26.08 10.48 42.92 2.52
1851 1950 7.151308 AGAGAAAATCGGAGATAGTTGCATAG 58.849 38.462 0.00 0.00 45.12 2.23
1877 1976 1.356059 TGGTAGAGGTGAGCTCAGAGT 59.644 52.381 18.89 4.12 0.00 3.24
1881 1980 0.744281 GAGGTGAGCTCAGAGTAGCC 59.256 60.000 18.89 13.75 43.86 3.93
1882 1981 0.334676 AGGTGAGCTCAGAGTAGCCT 59.665 55.000 18.89 15.98 43.86 4.58
1900 1999 4.035278 GCCTCATAGTCATATAGGCGAC 57.965 50.000 0.00 0.00 42.98 5.19
1913 2012 2.684001 AGGCGACGGATCATTGTAAA 57.316 45.000 0.00 0.00 0.00 2.01
2029 2130 2.163010 TGTTGGTAGAGCTGTAGTACGC 59.837 50.000 0.00 8.48 0.00 4.42
2138 2239 5.843673 TTGTGAAGTGGCACTTTAATTGA 57.156 34.783 31.60 14.39 38.80 2.57
2160 2262 5.129485 TGATTTCTAGGGTTGTTTTTGGCAA 59.871 36.000 0.00 0.00 0.00 4.52
2224 2326 5.423704 TCCGGTCCTTGTATTAACATTCA 57.576 39.130 0.00 0.00 34.97 2.57
2373 2475 4.641989 AGGTGTATCTGACAATCCAATTGC 59.358 41.667 0.00 0.00 43.98 3.56
2375 2477 2.857592 ATCTGACAATCCAATTGCGC 57.142 45.000 0.00 0.00 43.98 6.09
2380 2482 1.227031 CAATCCAATTGCGCCGCAT 60.227 52.632 14.63 0.00 38.76 4.73
2399 2501 4.572389 CGCATGATAGGTGAGTTAAAGCTT 59.428 41.667 0.00 0.00 0.00 3.74
2402 2504 7.410485 GCATGATAGGTGAGTTAAAGCTTTAC 58.590 38.462 18.45 13.15 0.00 2.01
2404 2506 8.946085 CATGATAGGTGAGTTAAAGCTTTACAA 58.054 33.333 18.45 4.30 0.00 2.41
2420 2522 7.425606 AGCTTTACAAGATAAAAGTTGTGGTG 58.574 34.615 0.00 0.00 37.46 4.17
2423 2525 5.438761 ACAAGATAAAAGTTGTGGTGCTC 57.561 39.130 0.00 0.00 35.55 4.26
2424 2526 4.278419 ACAAGATAAAAGTTGTGGTGCTCC 59.722 41.667 0.00 0.00 35.55 4.70
2426 2528 4.469657 AGATAAAAGTTGTGGTGCTCCAA 58.530 39.130 9.53 0.00 46.15 3.53
2427 2529 4.520492 AGATAAAAGTTGTGGTGCTCCAAG 59.480 41.667 9.53 0.00 46.15 3.61
2428 2530 2.143876 AAAGTTGTGGTGCTCCAAGT 57.856 45.000 9.53 0.00 46.15 3.16
2429 2531 3.290948 AAAGTTGTGGTGCTCCAAGTA 57.709 42.857 9.53 0.00 46.15 2.24
2430 2532 2.550830 AGTTGTGGTGCTCCAAGTAG 57.449 50.000 9.53 0.00 46.15 2.57
2431 2533 2.047061 AGTTGTGGTGCTCCAAGTAGA 58.953 47.619 9.53 0.00 46.15 2.59
2433 2535 2.744202 GTTGTGGTGCTCCAAGTAGATG 59.256 50.000 9.53 0.00 46.15 2.90
2434 2536 1.339055 TGTGGTGCTCCAAGTAGATGC 60.339 52.381 9.53 0.00 46.15 3.91
2436 2538 2.168521 GTGGTGCTCCAAGTAGATGCTA 59.831 50.000 9.53 0.00 46.15 3.49
2437 2539 3.041211 TGGTGCTCCAAGTAGATGCTAT 58.959 45.455 4.68 0.00 41.25 2.97
2439 2541 4.080356 TGGTGCTCCAAGTAGATGCTATTT 60.080 41.667 4.68 0.00 41.25 1.40
2442 2544 6.049149 GTGCTCCAAGTAGATGCTATTTGTA 58.951 40.000 8.30 0.00 0.00 2.41
2443 2545 6.018669 GTGCTCCAAGTAGATGCTATTTGTAC 60.019 42.308 8.30 0.00 0.00 2.90
2445 2547 6.686632 GCTCCAAGTAGATGCTATTTGTACCT 60.687 42.308 8.30 0.00 0.00 3.08
2446 2548 6.582636 TCCAAGTAGATGCTATTTGTACCTG 58.417 40.000 8.30 0.00 0.00 4.00
2447 2549 5.237344 CCAAGTAGATGCTATTTGTACCTGC 59.763 44.000 8.30 0.00 0.00 4.85
2448 2550 5.614324 AGTAGATGCTATTTGTACCTGCA 57.386 39.130 0.00 0.00 38.05 4.41
2450 2552 4.760530 AGATGCTATTTGTACCTGCAGA 57.239 40.909 17.39 0.00 37.07 4.26
2452 2554 5.121811 AGATGCTATTTGTACCTGCAGAAG 58.878 41.667 17.39 1.02 37.07 2.85
2453 2555 4.286297 TGCTATTTGTACCTGCAGAAGT 57.714 40.909 17.39 8.18 0.00 3.01
2454 2556 4.651778 TGCTATTTGTACCTGCAGAAGTT 58.348 39.130 17.39 0.00 0.00 2.66
2456 2558 4.455877 GCTATTTGTACCTGCAGAAGTTGT 59.544 41.667 17.39 6.54 0.00 3.32
2463 2807 4.150897 ACCTGCAGAAGTTGTGACTTTA 57.849 40.909 17.39 0.00 45.88 1.85
2464 2808 3.877508 ACCTGCAGAAGTTGTGACTTTAC 59.122 43.478 17.39 0.00 45.88 2.01
2466 2810 4.576463 CCTGCAGAAGTTGTGACTTTACTT 59.424 41.667 17.39 0.00 45.88 2.24
2471 2815 6.183360 GCAGAAGTTGTGACTTTACTTTGAGT 60.183 38.462 3.80 0.00 45.88 3.41
2473 2817 7.905493 CAGAAGTTGTGACTTTACTTTGAGTTC 59.095 37.037 0.00 0.00 45.88 3.01
2484 2828 9.020731 ACTTTACTTTGAGTTCTTTTCTTCCAA 57.979 29.630 0.00 0.00 0.00 3.53
2487 2831 7.326968 ACTTTGAGTTCTTTTCTTCCAAGAG 57.673 36.000 0.00 0.00 36.22 2.85
2496 2840 7.321745 TCTTTTCTTCCAAGAGAAAACTGTC 57.678 36.000 8.30 0.00 45.66 3.51
2508 2862 2.332063 AAACTGTCTGGTCTGTGTGG 57.668 50.000 0.00 0.00 0.00 4.17
2525 2879 5.904941 TGTGTGGAATGATATGGCAATTTC 58.095 37.500 0.00 0.00 0.00 2.17
2544 2898 8.761575 CAATTTCATTGCTTTATGGTTGTACT 57.238 30.769 0.00 0.00 32.92 2.73
2545 2899 8.863049 CAATTTCATTGCTTTATGGTTGTACTC 58.137 33.333 0.00 0.00 32.92 2.59
2546 2900 6.509418 TTCATTGCTTTATGGTTGTACTCC 57.491 37.500 0.00 0.00 0.00 3.85
2547 2901 4.947388 TCATTGCTTTATGGTTGTACTCCC 59.053 41.667 0.00 0.00 0.00 4.30
2548 2902 4.650972 TTGCTTTATGGTTGTACTCCCT 57.349 40.909 0.00 0.00 0.00 4.20
2549 2903 4.216411 TGCTTTATGGTTGTACTCCCTC 57.784 45.455 0.00 0.00 0.00 4.30
2550 2904 3.054655 TGCTTTATGGTTGTACTCCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
2551 2905 3.793559 CTTTATGGTTGTACTCCCTCCG 58.206 50.000 0.00 0.00 0.00 4.63
2552 2906 2.537633 TATGGTTGTACTCCCTCCGT 57.462 50.000 0.00 0.00 0.00 4.69
2553 2907 1.652947 ATGGTTGTACTCCCTCCGTT 58.347 50.000 0.00 0.00 0.00 4.44
2554 2908 0.971386 TGGTTGTACTCCCTCCGTTC 59.029 55.000 0.00 0.00 0.00 3.95
2555 2909 0.248565 GGTTGTACTCCCTCCGTTCC 59.751 60.000 0.00 0.00 0.00 3.62
2556 2910 1.264295 GTTGTACTCCCTCCGTTCCT 58.736 55.000 0.00 0.00 0.00 3.36
2557 2911 2.450476 GTTGTACTCCCTCCGTTCCTA 58.550 52.381 0.00 0.00 0.00 2.94
2558 2912 2.827921 GTTGTACTCCCTCCGTTCCTAA 59.172 50.000 0.00 0.00 0.00 2.69
2559 2913 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2560 2914 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2561 2915 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2562 2916 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2563 2917 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2564 2918 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2565 2919 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2566 2920 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2567 2921 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2568 2922 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2569 2923 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2570 2924 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2571 2925 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2572 2926 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2589 2943 9.442047 AAGTCTTTGTAGAGATTCCACTAAATG 57.558 33.333 0.00 0.00 0.00 2.32
2604 2958 6.823678 CACTAAATGGACTACATACGGAAC 57.176 41.667 0.00 0.00 39.40 3.62
2605 2959 6.334989 CACTAAATGGACTACATACGGAACA 58.665 40.000 0.00 0.00 39.40 3.18
2606 2960 6.814644 CACTAAATGGACTACATACGGAACAA 59.185 38.462 0.00 0.00 39.40 2.83
2607 2961 7.332430 CACTAAATGGACTACATACGGAACAAA 59.668 37.037 0.00 0.00 39.40 2.83
2608 2962 7.879160 ACTAAATGGACTACATACGGAACAAAA 59.121 33.333 0.00 0.00 39.40 2.44
2609 2963 7.696992 AAATGGACTACATACGGAACAAAAT 57.303 32.000 0.00 0.00 39.40 1.82
2610 2964 6.677781 ATGGACTACATACGGAACAAAATG 57.322 37.500 0.00 0.00 38.26 2.32
2611 2965 5.795972 TGGACTACATACGGAACAAAATGA 58.204 37.500 0.00 0.00 0.00 2.57
2612 2966 6.231951 TGGACTACATACGGAACAAAATGAA 58.768 36.000 0.00 0.00 0.00 2.57
2613 2967 6.882140 TGGACTACATACGGAACAAAATGAAT 59.118 34.615 0.00 0.00 0.00 2.57
2614 2968 7.148323 TGGACTACATACGGAACAAAATGAATG 60.148 37.037 0.00 0.00 0.00 2.67
2615 2969 7.065324 GGACTACATACGGAACAAAATGAATGA 59.935 37.037 0.00 0.00 0.00 2.57
2616 2970 8.330466 ACTACATACGGAACAAAATGAATGAA 57.670 30.769 0.00 0.00 0.00 2.57
2617 2971 8.956426 ACTACATACGGAACAAAATGAATGAAT 58.044 29.630 0.00 0.00 0.00 2.57
2618 2972 9.438291 CTACATACGGAACAAAATGAATGAATC 57.562 33.333 0.00 0.00 0.00 2.52
2619 2973 8.055279 ACATACGGAACAAAATGAATGAATCT 57.945 30.769 0.00 0.00 0.00 2.40
2620 2974 9.173021 ACATACGGAACAAAATGAATGAATCTA 57.827 29.630 0.00 0.00 0.00 1.98
2621 2975 9.438291 CATACGGAACAAAATGAATGAATCTAC 57.562 33.333 0.00 0.00 0.00 2.59
2622 2976 7.447374 ACGGAACAAAATGAATGAATCTACA 57.553 32.000 0.00 0.00 0.00 2.74
2623 2977 7.305474 ACGGAACAAAATGAATGAATCTACAC 58.695 34.615 0.00 0.00 0.00 2.90
2624 2978 7.174946 ACGGAACAAAATGAATGAATCTACACT 59.825 33.333 0.00 0.00 0.00 3.55
2625 2979 8.023128 CGGAACAAAATGAATGAATCTACACTT 58.977 33.333 0.00 0.00 0.00 3.16
2648 3002 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
2651 3005 7.987268 AAATGCATCTATATACATCCGTACG 57.013 36.000 8.69 8.69 0.00 3.67
2652 3006 6.694877 ATGCATCTATATACATCCGTACGT 57.305 37.500 15.21 0.00 0.00 3.57
2653 3007 5.875930 TGCATCTATATACATCCGTACGTG 58.124 41.667 15.21 9.44 0.00 4.49
2654 3008 5.163693 TGCATCTATATACATCCGTACGTGG 60.164 44.000 15.21 5.54 0.00 4.94
2655 3009 5.163683 GCATCTATATACATCCGTACGTGGT 60.164 44.000 15.21 11.27 0.00 4.16
2656 3010 6.624423 GCATCTATATACATCCGTACGTGGTT 60.624 42.308 15.21 1.80 0.00 3.67
2657 3011 6.882610 TCTATATACATCCGTACGTGGTTT 57.117 37.500 15.21 6.91 0.00 3.27
2658 3012 7.977789 TCTATATACATCCGTACGTGGTTTA 57.022 36.000 15.21 8.75 0.00 2.01
2659 3013 8.565896 TCTATATACATCCGTACGTGGTTTAT 57.434 34.615 15.21 14.35 0.00 1.40
2660 3014 9.665719 TCTATATACATCCGTACGTGGTTTATA 57.334 33.333 15.21 14.65 0.00 0.98
2661 3015 9.926751 CTATATACATCCGTACGTGGTTTATAG 57.073 37.037 15.21 18.75 0.00 1.31
2662 3016 4.989279 ACATCCGTACGTGGTTTATAGT 57.011 40.909 15.21 0.00 0.00 2.12
2663 3017 4.675510 ACATCCGTACGTGGTTTATAGTG 58.324 43.478 15.21 0.00 0.00 2.74
2664 3018 3.781079 TCCGTACGTGGTTTATAGTGG 57.219 47.619 15.21 0.00 0.00 4.00
2665 3019 3.351740 TCCGTACGTGGTTTATAGTGGA 58.648 45.455 15.21 0.00 0.00 4.02
2666 3020 3.128589 TCCGTACGTGGTTTATAGTGGAC 59.871 47.826 15.21 0.00 0.00 4.02
2667 3021 3.129287 CCGTACGTGGTTTATAGTGGACT 59.871 47.826 15.21 0.00 0.00 3.85
2668 3022 4.346129 CGTACGTGGTTTATAGTGGACTC 58.654 47.826 7.22 0.00 0.00 3.36
2669 3023 4.095483 CGTACGTGGTTTATAGTGGACTCT 59.905 45.833 7.22 0.00 0.00 3.24
2670 3024 4.715527 ACGTGGTTTATAGTGGACTCTC 57.284 45.455 0.00 0.00 0.00 3.20
2671 3025 4.342359 ACGTGGTTTATAGTGGACTCTCT 58.658 43.478 0.00 0.00 0.00 3.10
2672 3026 5.503927 ACGTGGTTTATAGTGGACTCTCTA 58.496 41.667 0.00 0.00 0.00 2.43
2673 3027 6.127793 ACGTGGTTTATAGTGGACTCTCTAT 58.872 40.000 0.00 0.00 34.95 1.98
2674 3028 7.285566 ACGTGGTTTATAGTGGACTCTCTATA 58.714 38.462 0.00 0.00 33.37 1.31
2675 3029 7.776969 ACGTGGTTTATAGTGGACTCTCTATAA 59.223 37.037 0.00 0.00 38.81 0.98
2676 3030 8.627403 CGTGGTTTATAGTGGACTCTCTATAAA 58.373 37.037 15.12 15.12 42.89 1.40
2677 3031 9.968870 GTGGTTTATAGTGGACTCTCTATAAAG 57.031 37.037 17.29 0.00 44.15 1.85
2678 3032 9.931698 TGGTTTATAGTGGACTCTCTATAAAGA 57.068 33.333 17.29 10.59 44.15 2.52
2702 3056 9.453830 AGACTTATATTTAAGAATGGAGGGAGT 57.546 33.333 9.58 0.00 38.56 3.85
2731 3085 7.531716 TGTTTATTTAATTGGTAAGGAGTGCG 58.468 34.615 0.00 0.00 0.00 5.34
2734 3088 1.821216 AATTGGTAAGGAGTGCGGTG 58.179 50.000 0.00 0.00 0.00 4.94
2739 3093 0.249398 GTAAGGAGTGCGGTGGACAT 59.751 55.000 0.00 0.00 0.00 3.06
2744 3098 3.737172 GTGCGGTGGACATGGTGC 61.737 66.667 0.00 0.00 0.00 5.01
2752 3106 0.393402 TGGACATGGTGCAGATCAGC 60.393 55.000 2.62 2.62 43.23 4.26
2788 3142 6.520272 TGTTGGCAGCTGTTTAATAATTTGT 58.480 32.000 16.64 0.00 0.00 2.83
2889 3243 5.694995 AGAAGTTTCTTTGAAGGATGTGGA 58.305 37.500 0.00 0.00 32.55 4.02
2916 3270 2.743538 GCGCTGGACTGCATGACA 60.744 61.111 0.00 0.00 0.00 3.58
2999 3353 8.362639 TGAAACGTAGTATCCTTTGTTCTAGTT 58.637 33.333 0.00 0.00 45.00 2.24
3000 3354 8.530269 AAACGTAGTATCCTTTGTTCTAGTTG 57.470 34.615 0.00 0.00 45.00 3.16
3019 3373 0.310543 GTGCGTTCCTGTTCATGCAA 59.689 50.000 0.00 0.00 36.68 4.08
3100 3557 5.197451 TGTTTAAGGTTTGATGACACTGGT 58.803 37.500 0.00 0.00 0.00 4.00
3109 3566 4.834357 TGATGACACTGGTGTTTTGATG 57.166 40.909 7.82 0.00 45.05 3.07
3119 3576 5.181690 TGGTGTTTTGATGCAACTAACTC 57.818 39.130 0.00 0.00 0.00 3.01
3142 3601 3.769739 TGTATGGCAGTCTGACTTGTT 57.230 42.857 7.77 0.00 0.00 2.83
3151 3610 4.494855 GCAGTCTGACTTGTTTCACTGTTC 60.495 45.833 7.77 0.00 0.00 3.18
3165 3624 6.861065 TTCACTGTTCTGGTGTAGAAATTC 57.139 37.500 0.00 0.00 46.48 2.17
3368 3827 0.248565 AGCGCACATGACTCATCAGT 59.751 50.000 11.47 0.00 38.57 3.41
3435 3894 6.296026 AGCTTGAATCTTGTGGTACAACTTA 58.704 36.000 1.23 0.00 44.16 2.24
3436 3895 6.942576 AGCTTGAATCTTGTGGTACAACTTAT 59.057 34.615 1.23 0.00 44.16 1.73
3437 3896 7.023575 GCTTGAATCTTGTGGTACAACTTATG 58.976 38.462 1.23 0.00 44.16 1.90
3438 3897 6.494893 TGAATCTTGTGGTACAACTTATGC 57.505 37.500 1.23 0.00 44.16 3.14
3439 3898 5.121611 TGAATCTTGTGGTACAACTTATGCG 59.878 40.000 1.23 0.00 44.16 4.73
3440 3899 2.739913 TCTTGTGGTACAACTTATGCGC 59.260 45.455 0.00 0.00 44.16 6.09
3441 3900 2.171341 TGTGGTACAACTTATGCGCA 57.829 45.000 14.96 14.96 44.16 6.09
3442 3901 2.073056 TGTGGTACAACTTATGCGCAG 58.927 47.619 18.32 4.62 44.16 5.18
3466 3942 8.391106 CAGCGCTCTTATCTACAATTTAGTTTT 58.609 33.333 7.13 0.00 0.00 2.43
3467 3943 8.391106 AGCGCTCTTATCTACAATTTAGTTTTG 58.609 33.333 2.64 0.00 0.00 2.44
3490 3966 3.616956 TTAGTCCATTGGAGTCAGCTG 57.383 47.619 16.42 7.63 36.65 4.24
3499 3975 1.215647 GAGTCAGCTGGTACCACCG 59.784 63.158 11.60 3.24 42.58 4.94
3510 3986 0.108138 GTACCACCGCAAGATGCTCT 60.108 55.000 0.43 0.00 42.25 4.09
3511 3987 0.613260 TACCACCGCAAGATGCTCTT 59.387 50.000 0.43 0.00 42.25 2.85
3512 3988 0.613260 ACCACCGCAAGATGCTCTTA 59.387 50.000 0.43 0.00 42.25 2.10
3513 3989 1.003118 ACCACCGCAAGATGCTCTTAA 59.997 47.619 0.43 0.00 42.25 1.85
3525 4001 9.657121 GCAAGATGCTCTTAATTAATCTGTTAC 57.343 33.333 0.00 0.00 40.96 2.50
3561 4037 6.354938 AGTAATTCACATGACTCATCAGCAT 58.645 36.000 0.00 0.00 38.57 3.79
3562 4038 6.827251 AGTAATTCACATGACTCATCAGCATT 59.173 34.615 0.00 0.00 38.57 3.56
3582 4058 7.873739 GCATTATGCTTTTAGAGTTGTTTGT 57.126 32.000 10.27 0.00 40.96 2.83
3606 4082 6.590234 AAGTTGAAACCTGACAGAGTTTTT 57.410 33.333 17.61 9.35 36.36 1.94
3626 4102 2.435586 GTGCAGACTGATGCCGCT 60.436 61.111 6.65 0.00 45.91 5.52
3675 4151 5.541953 TGCAGATATGTAAGCACATCTCT 57.458 39.130 0.00 0.00 44.90 3.10
3776 4253 5.163457 CCTTTTGAAAGTCCAGCCTTACAAA 60.163 40.000 3.09 0.00 34.20 2.83
3930 4407 3.725490 TCTGATTGCAAGATCTCATCCG 58.275 45.455 4.94 0.00 0.00 4.18
4070 4547 1.022735 CAGCCAGAATCAGATGTGCC 58.977 55.000 0.00 0.00 0.00 5.01
4109 4586 2.988493 CCAGAAACCAAATGACAATGCG 59.012 45.455 0.00 0.00 0.00 4.73
4268 4745 3.329386 TGAAGCATTGTCGAAGAAGAGG 58.671 45.455 0.00 0.00 39.69 3.69
4373 4850 6.721318 TGAAACTAAGGCCAATATTGACTCT 58.279 36.000 17.23 7.96 0.00 3.24
4733 5210 4.870021 AAAGGCCACTGAGATTAATCCT 57.130 40.909 11.92 0.00 0.00 3.24
4781 5258 1.001633 TCAAGTACGGAACCTTCAGCC 59.998 52.381 0.00 0.00 0.00 4.85
4927 5404 0.034756 TGATCACGGTGGACCAGTTG 59.965 55.000 8.50 0.00 35.14 3.16
4928 5405 0.034896 GATCACGGTGGACCAGTTGT 59.965 55.000 8.50 0.00 35.14 3.32
4963 5441 2.509336 CCTTCGTTCGAGCCGCAT 60.509 61.111 0.00 0.00 0.00 4.73
4979 5457 3.627577 GCCGCATGAAGAATTTTCTCCTA 59.372 43.478 0.00 0.00 36.28 2.94
5059 5542 2.905075 TGTATGGCAGTAGACACATGC 58.095 47.619 0.00 0.00 33.89 4.06
5176 5664 4.393062 ACTCAAAAATGTAGATGCTGACGG 59.607 41.667 0.00 0.00 0.00 4.79
5185 5795 0.099436 GATGCTGACGGGTGAATTGC 59.901 55.000 0.00 0.00 0.00 3.56
5454 6095 3.143728 GGCGACAAGAACCCTAGAAAAA 58.856 45.455 0.00 0.00 0.00 1.94
5487 6128 1.851304 AAGTGCTCTCTCTCCCTCTG 58.149 55.000 0.00 0.00 0.00 3.35
5573 6214 4.210955 GCTCTTTTCTCTGACAGTGACTTG 59.789 45.833 6.72 1.26 0.00 3.16
5787 6437 5.122554 TCGTAAACATTGCACGTAATTCCAT 59.877 36.000 0.00 0.00 37.02 3.41
5790 6440 6.704512 AAACATTGCACGTAATTCCATTTC 57.295 33.333 0.00 0.00 0.00 2.17
5810 6460 2.760650 TCGCTGTAATGAGGTGAGATGT 59.239 45.455 0.00 0.00 0.00 3.06
5814 6464 5.278709 CGCTGTAATGAGGTGAGATGTATCT 60.279 44.000 0.00 0.00 40.50 1.98
5815 6465 5.925397 GCTGTAATGAGGTGAGATGTATCTG 59.075 44.000 0.00 0.00 37.25 2.90
5816 6466 6.410942 TGTAATGAGGTGAGATGTATCTGG 57.589 41.667 0.00 0.00 37.25 3.86
5817 6467 4.970860 AATGAGGTGAGATGTATCTGGG 57.029 45.455 0.00 0.00 37.25 4.45
5818 6468 2.682594 TGAGGTGAGATGTATCTGGGG 58.317 52.381 0.00 0.00 37.25 4.96
5819 6469 1.346068 GAGGTGAGATGTATCTGGGGC 59.654 57.143 0.00 0.00 37.25 5.80
5820 6470 1.131638 GGTGAGATGTATCTGGGGCA 58.868 55.000 0.00 0.00 37.25 5.36
5821 6471 1.202698 GGTGAGATGTATCTGGGGCAC 60.203 57.143 0.00 1.63 37.25 5.01
5822 6472 1.765314 GTGAGATGTATCTGGGGCACT 59.235 52.381 0.00 0.00 37.25 4.40
5823 6473 1.764723 TGAGATGTATCTGGGGCACTG 59.235 52.381 0.00 0.00 37.25 3.66
5824 6474 2.042464 GAGATGTATCTGGGGCACTGA 58.958 52.381 0.00 0.00 37.25 3.41
5825 6475 2.036992 GAGATGTATCTGGGGCACTGAG 59.963 54.545 2.00 0.00 37.25 3.35
5826 6476 2.042464 GATGTATCTGGGGCACTGAGA 58.958 52.381 2.00 0.00 0.00 3.27
5827 6477 1.951209 TGTATCTGGGGCACTGAGAA 58.049 50.000 2.00 0.00 0.00 2.87
5828 6478 1.555075 TGTATCTGGGGCACTGAGAAC 59.445 52.381 2.00 3.97 0.00 3.01
5829 6479 1.555075 GTATCTGGGGCACTGAGAACA 59.445 52.381 2.00 0.00 0.00 3.18
5830 6480 1.293062 ATCTGGGGCACTGAGAACAT 58.707 50.000 2.00 0.00 0.00 2.71
5831 6481 1.951209 TCTGGGGCACTGAGAACATA 58.049 50.000 0.00 0.00 0.00 2.29
5832 6482 2.481441 TCTGGGGCACTGAGAACATAT 58.519 47.619 0.00 0.00 0.00 1.78
5833 6483 2.435805 TCTGGGGCACTGAGAACATATC 59.564 50.000 0.00 0.00 0.00 1.63
5834 6484 2.437281 CTGGGGCACTGAGAACATATCT 59.563 50.000 0.00 0.00 42.61 1.98
5835 6485 2.171237 TGGGGCACTGAGAACATATCTG 59.829 50.000 0.00 0.00 38.96 2.90
5836 6486 2.486191 GGGGCACTGAGAACATATCTGG 60.486 54.545 0.00 0.00 38.96 3.86
5837 6487 2.171448 GGGCACTGAGAACATATCTGGT 59.829 50.000 0.00 0.00 38.96 4.00
5838 6488 3.201290 GGCACTGAGAACATATCTGGTG 58.799 50.000 0.00 0.00 38.96 4.17
5839 6489 2.611292 GCACTGAGAACATATCTGGTGC 59.389 50.000 13.44 13.44 46.93 5.01
5840 6490 3.865446 CACTGAGAACATATCTGGTGCA 58.135 45.455 0.00 0.00 38.96 4.57
5841 6491 4.449131 CACTGAGAACATATCTGGTGCAT 58.551 43.478 0.00 0.00 38.96 3.96
5842 6492 4.880120 CACTGAGAACATATCTGGTGCATT 59.120 41.667 0.00 0.00 38.96 3.56
5843 6493 4.880120 ACTGAGAACATATCTGGTGCATTG 59.120 41.667 0.00 0.00 38.96 2.82
5844 6494 4.201657 TGAGAACATATCTGGTGCATTGG 58.798 43.478 0.00 0.00 38.96 3.16
5845 6495 3.559069 AGAACATATCTGGTGCATTGGG 58.441 45.455 0.00 0.00 36.88 4.12
5846 6496 2.369983 ACATATCTGGTGCATTGGGG 57.630 50.000 0.00 0.00 0.00 4.96
5847 6497 0.963962 CATATCTGGTGCATTGGGGC 59.036 55.000 0.00 0.00 0.00 5.80
5848 6498 0.855598 ATATCTGGTGCATTGGGGCT 59.144 50.000 0.00 0.00 34.04 5.19
5849 6499 0.630673 TATCTGGTGCATTGGGGCTT 59.369 50.000 0.00 0.00 34.04 4.35
5850 6500 0.974010 ATCTGGTGCATTGGGGCTTG 60.974 55.000 0.00 0.00 34.04 4.01
5851 6501 3.305177 CTGGTGCATTGGGGCTTGC 62.305 63.158 0.00 0.00 39.33 4.01
5852 6502 4.440127 GGTGCATTGGGGCTTGCG 62.440 66.667 0.00 0.00 41.80 4.85
5853 6503 4.440127 GTGCATTGGGGCTTGCGG 62.440 66.667 0.00 0.00 41.80 5.69
5854 6504 4.992740 TGCATTGGGGCTTGCGGT 62.993 61.111 0.00 0.00 41.80 5.68
5855 6505 4.440127 GCATTGGGGCTTGCGGTG 62.440 66.667 0.00 0.00 0.00 4.94
5856 6506 4.440127 CATTGGGGCTTGCGGTGC 62.440 66.667 0.00 0.00 0.00 5.01
5857 6507 4.992740 ATTGGGGCTTGCGGTGCA 62.993 61.111 0.00 0.00 36.47 4.57
5862 6512 4.715523 GGCTTGCGGTGCACCCTA 62.716 66.667 29.95 16.25 38.71 3.53
5863 6513 3.431725 GCTTGCGGTGCACCCTAC 61.432 66.667 29.95 19.45 38.71 3.18
5864 6514 2.746277 CTTGCGGTGCACCCTACC 60.746 66.667 29.95 15.75 38.71 3.18
5865 6515 3.246112 TTGCGGTGCACCCTACCT 61.246 61.111 29.95 0.00 38.71 3.08
5866 6516 1.895020 CTTGCGGTGCACCCTACCTA 61.895 60.000 29.95 11.54 38.71 3.08
5867 6517 1.895020 TTGCGGTGCACCCTACCTAG 61.895 60.000 29.95 14.93 38.71 3.02
5868 6518 3.090219 GCGGTGCACCCTACCTAGG 62.090 68.421 29.95 14.17 43.25 3.02
5869 6519 1.684734 CGGTGCACCCTACCTAGGT 60.685 63.158 29.95 20.57 42.03 3.08
5870 6520 1.262640 CGGTGCACCCTACCTAGGTT 61.263 60.000 29.95 4.29 42.03 3.50
5871 6521 0.252197 GGTGCACCCTACCTAGGTTG 59.748 60.000 26.31 18.48 42.03 3.77
5874 6524 1.912971 CACCCTACCTAGGTTGCCC 59.087 63.158 22.11 0.00 42.03 5.36
5875 6525 0.620700 CACCCTACCTAGGTTGCCCT 60.621 60.000 22.11 0.00 45.51 5.19
5876 6526 1.021275 ACCCTACCTAGGTTGCCCTA 58.979 55.000 22.11 0.00 42.66 3.53
5877 6527 1.584105 ACCCTACCTAGGTTGCCCTAT 59.416 52.381 22.11 0.00 42.54 2.57
5878 6528 2.021341 ACCCTACCTAGGTTGCCCTATT 60.021 50.000 22.11 0.00 42.54 1.73
5879 6529 3.053826 CCCTACCTAGGTTGCCCTATTT 58.946 50.000 22.11 0.00 42.54 1.40
5880 6530 4.237018 CCCTACCTAGGTTGCCCTATTTA 58.763 47.826 22.11 0.00 42.54 1.40
5881 6531 4.286291 CCCTACCTAGGTTGCCCTATTTAG 59.714 50.000 22.11 6.89 42.54 1.85
5882 6532 5.152934 CCTACCTAGGTTGCCCTATTTAGA 58.847 45.833 22.11 0.00 42.54 2.10
5883 6533 5.605488 CCTACCTAGGTTGCCCTATTTAGAA 59.395 44.000 22.11 0.00 42.54 2.10
5884 6534 5.632034 ACCTAGGTTGCCCTATTTAGAAG 57.368 43.478 9.21 0.00 42.54 2.85
5885 6535 4.141459 ACCTAGGTTGCCCTATTTAGAAGC 60.141 45.833 9.21 0.00 42.54 3.86
5886 6536 2.919228 AGGTTGCCCTATTTAGAAGCG 58.081 47.619 0.00 0.00 40.19 4.68
5887 6537 2.238898 AGGTTGCCCTATTTAGAAGCGT 59.761 45.455 0.00 0.00 40.19 5.07
5888 6538 2.612672 GGTTGCCCTATTTAGAAGCGTC 59.387 50.000 0.00 0.00 0.00 5.19
5889 6539 2.612672 GTTGCCCTATTTAGAAGCGTCC 59.387 50.000 0.00 0.00 0.00 4.79
5890 6540 1.834896 TGCCCTATTTAGAAGCGTCCA 59.165 47.619 0.00 0.00 0.00 4.02
5891 6541 2.237643 TGCCCTATTTAGAAGCGTCCAA 59.762 45.455 0.00 0.00 0.00 3.53
5892 6542 3.275999 GCCCTATTTAGAAGCGTCCAAA 58.724 45.455 0.00 0.00 0.00 3.28
5893 6543 3.692593 GCCCTATTTAGAAGCGTCCAAAA 59.307 43.478 0.00 0.00 0.00 2.44
5894 6544 4.157105 GCCCTATTTAGAAGCGTCCAAAAA 59.843 41.667 0.00 0.00 0.00 1.94
5895 6545 5.163550 GCCCTATTTAGAAGCGTCCAAAAAT 60.164 40.000 0.00 4.41 0.00 1.82
5896 6546 6.627287 GCCCTATTTAGAAGCGTCCAAAAATT 60.627 38.462 9.36 0.00 0.00 1.82
5897 6547 6.972901 CCCTATTTAGAAGCGTCCAAAAATTC 59.027 38.462 9.36 0.00 0.00 2.17
5898 6548 6.972901 CCTATTTAGAAGCGTCCAAAAATTCC 59.027 38.462 9.36 0.00 0.00 3.01
5899 6549 2.989422 AGAAGCGTCCAAAAATTCCG 57.011 45.000 0.00 0.00 0.00 4.30
5900 6550 2.500229 AGAAGCGTCCAAAAATTCCGA 58.500 42.857 0.00 0.00 0.00 4.55
5901 6551 2.882137 AGAAGCGTCCAAAAATTCCGAA 59.118 40.909 0.00 0.00 0.00 4.30
5902 6552 3.316868 AGAAGCGTCCAAAAATTCCGAAA 59.683 39.130 0.00 0.00 0.00 3.46
5903 6553 3.719173 AGCGTCCAAAAATTCCGAAAA 57.281 38.095 0.00 0.00 0.00 2.29
5904 6554 4.048241 AGCGTCCAAAAATTCCGAAAAA 57.952 36.364 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.613026 TTCGTTGAGTTCAAGCCTGA 57.387 45.000 0.00 0.00 36.39 3.86
2 3 3.691049 TTTTCGTTGAGTTCAAGCCTG 57.309 42.857 0.00 0.00 36.39 4.85
28 29 8.797438 GGGGAAAGAATGTTATATGGATCTTTC 58.203 37.037 14.51 14.51 45.96 2.62
29 30 8.288812 TGGGGAAAGAATGTTATATGGATCTTT 58.711 33.333 0.00 0.00 39.19 2.52
30 31 7.725844 GTGGGGAAAGAATGTTATATGGATCTT 59.274 37.037 0.00 0.00 0.00 2.40
31 32 7.147141 TGTGGGGAAAGAATGTTATATGGATCT 60.147 37.037 0.00 0.00 0.00 2.75
32 33 7.004086 TGTGGGGAAAGAATGTTATATGGATC 58.996 38.462 0.00 0.00 0.00 3.36
33 34 6.921412 TGTGGGGAAAGAATGTTATATGGAT 58.079 36.000 0.00 0.00 0.00 3.41
34 35 6.334378 TGTGGGGAAAGAATGTTATATGGA 57.666 37.500 0.00 0.00 0.00 3.41
35 36 7.264947 GTTTGTGGGGAAAGAATGTTATATGG 58.735 38.462 0.00 0.00 0.00 2.74
36 37 7.124147 AGGTTTGTGGGGAAAGAATGTTATATG 59.876 37.037 0.00 0.00 0.00 1.78
37 38 7.189087 AGGTTTGTGGGGAAAGAATGTTATAT 58.811 34.615 0.00 0.00 0.00 0.86
38 39 6.557568 AGGTTTGTGGGGAAAGAATGTTATA 58.442 36.000 0.00 0.00 0.00 0.98
39 40 5.402630 AGGTTTGTGGGGAAAGAATGTTAT 58.597 37.500 0.00 0.00 0.00 1.89
40 41 4.810345 AGGTTTGTGGGGAAAGAATGTTA 58.190 39.130 0.00 0.00 0.00 2.41
41 42 3.653164 AGGTTTGTGGGGAAAGAATGTT 58.347 40.909 0.00 0.00 0.00 2.71
42 43 3.328535 AGGTTTGTGGGGAAAGAATGT 57.671 42.857 0.00 0.00 0.00 2.71
43 44 5.799827 TTTAGGTTTGTGGGGAAAGAATG 57.200 39.130 0.00 0.00 0.00 2.67
44 45 5.071250 GGTTTTAGGTTTGTGGGGAAAGAAT 59.929 40.000 0.00 0.00 0.00 2.40
45 46 4.406326 GGTTTTAGGTTTGTGGGGAAAGAA 59.594 41.667 0.00 0.00 0.00 2.52
46 47 3.962063 GGTTTTAGGTTTGTGGGGAAAGA 59.038 43.478 0.00 0.00 0.00 2.52
47 48 3.243602 CGGTTTTAGGTTTGTGGGGAAAG 60.244 47.826 0.00 0.00 0.00 2.62
48 49 2.694109 CGGTTTTAGGTTTGTGGGGAAA 59.306 45.455 0.00 0.00 0.00 3.13
49 50 2.308690 CGGTTTTAGGTTTGTGGGGAA 58.691 47.619 0.00 0.00 0.00 3.97
50 51 1.984066 CGGTTTTAGGTTTGTGGGGA 58.016 50.000 0.00 0.00 0.00 4.81
51 52 0.315886 GCGGTTTTAGGTTTGTGGGG 59.684 55.000 0.00 0.00 0.00 4.96
52 53 1.324383 AGCGGTTTTAGGTTTGTGGG 58.676 50.000 0.00 0.00 0.00 4.61
53 54 4.776795 ATTAGCGGTTTTAGGTTTGTGG 57.223 40.909 0.00 0.00 0.00 4.17
54 55 4.849383 CGAATTAGCGGTTTTAGGTTTGTG 59.151 41.667 0.00 0.00 0.00 3.33
55 56 4.516321 ACGAATTAGCGGTTTTAGGTTTGT 59.484 37.500 0.00 0.00 35.12 2.83
56 57 5.038247 ACGAATTAGCGGTTTTAGGTTTG 57.962 39.130 0.00 0.00 35.12 2.93
57 58 6.990341 ATACGAATTAGCGGTTTTAGGTTT 57.010 33.333 0.00 0.00 35.12 3.27
58 59 6.990341 AATACGAATTAGCGGTTTTAGGTT 57.010 33.333 0.00 0.00 35.12 3.50
59 60 6.990341 AAATACGAATTAGCGGTTTTAGGT 57.010 33.333 0.00 0.00 35.12 3.08
60 61 7.691158 AGAAAATACGAATTAGCGGTTTTAGG 58.309 34.615 0.00 0.00 35.18 2.69
61 62 8.385111 TGAGAAAATACGAATTAGCGGTTTTAG 58.615 33.333 0.00 0.00 35.18 1.85
62 63 8.254178 TGAGAAAATACGAATTAGCGGTTTTA 57.746 30.769 0.00 0.00 35.18 1.52
63 64 7.136289 TGAGAAAATACGAATTAGCGGTTTT 57.864 32.000 0.00 0.00 36.57 2.43
64 65 6.730960 TGAGAAAATACGAATTAGCGGTTT 57.269 33.333 0.00 0.00 35.12 3.27
65 66 6.018180 GGATGAGAAAATACGAATTAGCGGTT 60.018 38.462 0.00 0.00 35.12 4.44
66 67 5.465724 GGATGAGAAAATACGAATTAGCGGT 59.534 40.000 0.00 0.00 35.12 5.68
67 68 5.465390 TGGATGAGAAAATACGAATTAGCGG 59.535 40.000 0.00 0.00 35.12 5.52
68 69 6.525121 TGGATGAGAAAATACGAATTAGCG 57.475 37.500 0.00 0.00 37.29 4.26
69 70 7.132863 GGTTGGATGAGAAAATACGAATTAGC 58.867 38.462 0.00 0.00 0.00 3.09
70 71 8.208718 TGGTTGGATGAGAAAATACGAATTAG 57.791 34.615 0.00 0.00 0.00 1.73
71 72 8.044309 TCTGGTTGGATGAGAAAATACGAATTA 58.956 33.333 0.00 0.00 0.00 1.40
72 73 6.884295 TCTGGTTGGATGAGAAAATACGAATT 59.116 34.615 0.00 0.00 0.00 2.17
73 74 6.316390 GTCTGGTTGGATGAGAAAATACGAAT 59.684 38.462 0.00 0.00 0.00 3.34
74 75 5.642063 GTCTGGTTGGATGAGAAAATACGAA 59.358 40.000 0.00 0.00 0.00 3.85
75 76 5.175859 GTCTGGTTGGATGAGAAAATACGA 58.824 41.667 0.00 0.00 0.00 3.43
76 77 4.935205 TGTCTGGTTGGATGAGAAAATACG 59.065 41.667 0.00 0.00 0.00 3.06
77 78 6.817765 TTGTCTGGTTGGATGAGAAAATAC 57.182 37.500 0.00 0.00 0.00 1.89
78 79 9.527157 TTATTTGTCTGGTTGGATGAGAAAATA 57.473 29.630 0.00 0.00 0.00 1.40
79 80 6.923199 ATTTGTCTGGTTGGATGAGAAAAT 57.077 33.333 0.00 0.00 0.00 1.82
80 81 7.831691 TTATTTGTCTGGTTGGATGAGAAAA 57.168 32.000 0.00 0.00 0.00 2.29
81 82 7.039784 CCTTTATTTGTCTGGTTGGATGAGAAA 60.040 37.037 0.00 0.00 0.00 2.52
82 83 6.434028 CCTTTATTTGTCTGGTTGGATGAGAA 59.566 38.462 0.00 0.00 0.00 2.87
83 84 5.945784 CCTTTATTTGTCTGGTTGGATGAGA 59.054 40.000 0.00 0.00 0.00 3.27
84 85 5.126061 CCCTTTATTTGTCTGGTTGGATGAG 59.874 44.000 0.00 0.00 0.00 2.90
85 86 5.016173 CCCTTTATTTGTCTGGTTGGATGA 58.984 41.667 0.00 0.00 0.00 2.92
86 87 4.772100 ACCCTTTATTTGTCTGGTTGGATG 59.228 41.667 0.00 0.00 0.00 3.51
87 88 5.010708 ACCCTTTATTTGTCTGGTTGGAT 57.989 39.130 0.00 0.00 0.00 3.41
88 89 4.463050 ACCCTTTATTTGTCTGGTTGGA 57.537 40.909 0.00 0.00 0.00 3.53
89 90 5.545063 AAACCCTTTATTTGTCTGGTTGG 57.455 39.130 0.00 0.00 36.29 3.77
90 91 6.478673 GTGAAAACCCTTTATTTGTCTGGTTG 59.521 38.462 0.00 0.00 36.29 3.77
91 92 6.382859 AGTGAAAACCCTTTATTTGTCTGGTT 59.617 34.615 0.00 0.00 37.68 3.67
92 93 5.897250 AGTGAAAACCCTTTATTTGTCTGGT 59.103 36.000 0.00 0.00 0.00 4.00
93 94 6.405278 AGTGAAAACCCTTTATTTGTCTGG 57.595 37.500 0.00 0.00 0.00 3.86
95 96 9.802039 TGTATAGTGAAAACCCTTTATTTGTCT 57.198 29.630 0.00 0.00 0.00 3.41
97 98 9.802039 TCTGTATAGTGAAAACCCTTTATTTGT 57.198 29.630 0.00 0.00 0.00 2.83
103 104 9.449719 CATTACTCTGTATAGTGAAAACCCTTT 57.550 33.333 0.00 0.00 0.00 3.11
104 105 7.553044 GCATTACTCTGTATAGTGAAAACCCTT 59.447 37.037 0.00 0.00 0.00 3.95
105 106 7.048512 GCATTACTCTGTATAGTGAAAACCCT 58.951 38.462 0.00 0.00 0.00 4.34
106 107 6.821665 TGCATTACTCTGTATAGTGAAAACCC 59.178 38.462 0.00 0.00 0.00 4.11
107 108 7.764443 TCTGCATTACTCTGTATAGTGAAAACC 59.236 37.037 0.00 0.00 0.00 3.27
108 109 8.703604 TCTGCATTACTCTGTATAGTGAAAAC 57.296 34.615 0.00 0.00 0.00 2.43
109 110 7.492669 GCTCTGCATTACTCTGTATAGTGAAAA 59.507 37.037 0.00 0.00 0.00 2.29
110 111 6.980978 GCTCTGCATTACTCTGTATAGTGAAA 59.019 38.462 0.00 0.00 0.00 2.69
111 112 6.507900 GCTCTGCATTACTCTGTATAGTGAA 58.492 40.000 0.00 0.00 0.00 3.18
112 113 5.278022 CGCTCTGCATTACTCTGTATAGTGA 60.278 44.000 0.00 0.00 0.00 3.41
113 114 4.914504 CGCTCTGCATTACTCTGTATAGTG 59.085 45.833 0.00 0.00 0.00 2.74
114 115 4.822350 TCGCTCTGCATTACTCTGTATAGT 59.178 41.667 0.00 0.00 0.00 2.12
115 116 5.363979 TCGCTCTGCATTACTCTGTATAG 57.636 43.478 0.00 0.00 0.00 1.31
116 117 5.966742 ATCGCTCTGCATTACTCTGTATA 57.033 39.130 0.00 0.00 0.00 1.47
117 118 4.862902 ATCGCTCTGCATTACTCTGTAT 57.137 40.909 0.00 0.00 0.00 2.29
118 119 5.767816 TTATCGCTCTGCATTACTCTGTA 57.232 39.130 0.00 0.00 0.00 2.74
119 120 4.655762 TTATCGCTCTGCATTACTCTGT 57.344 40.909 0.00 0.00 0.00 3.41
120 121 4.805719 TGTTTATCGCTCTGCATTACTCTG 59.194 41.667 0.00 0.00 0.00 3.35
121 122 4.806247 GTGTTTATCGCTCTGCATTACTCT 59.194 41.667 0.00 0.00 0.00 3.24
122 123 4.806247 AGTGTTTATCGCTCTGCATTACTC 59.194 41.667 0.00 0.00 30.20 2.59
123 124 4.568359 CAGTGTTTATCGCTCTGCATTACT 59.432 41.667 0.00 0.00 34.33 2.24
124 125 4.566759 TCAGTGTTTATCGCTCTGCATTAC 59.433 41.667 0.00 0.00 34.33 1.89
125 126 4.566759 GTCAGTGTTTATCGCTCTGCATTA 59.433 41.667 0.00 0.00 34.33 1.90
126 127 3.372206 GTCAGTGTTTATCGCTCTGCATT 59.628 43.478 0.00 0.00 34.33 3.56
127 128 2.932614 GTCAGTGTTTATCGCTCTGCAT 59.067 45.455 0.00 0.00 34.33 3.96
128 129 2.337583 GTCAGTGTTTATCGCTCTGCA 58.662 47.619 0.00 0.00 34.33 4.41
129 130 1.321743 CGTCAGTGTTTATCGCTCTGC 59.678 52.381 0.00 0.00 34.33 4.26
130 131 2.848887 CTCGTCAGTGTTTATCGCTCTG 59.151 50.000 0.00 0.00 34.33 3.35
131 132 2.488545 ACTCGTCAGTGTTTATCGCTCT 59.511 45.455 0.00 0.00 34.33 4.09
132 133 2.864968 ACTCGTCAGTGTTTATCGCTC 58.135 47.619 0.00 0.00 34.33 5.03
133 134 3.189910 TGTACTCGTCAGTGTTTATCGCT 59.810 43.478 0.00 0.00 37.37 4.93
134 135 3.495193 TGTACTCGTCAGTGTTTATCGC 58.505 45.455 0.00 0.00 33.62 4.58
135 136 4.913345 TGTTGTACTCGTCAGTGTTTATCG 59.087 41.667 0.00 0.00 33.62 2.92
136 137 5.164080 GCTGTTGTACTCGTCAGTGTTTATC 60.164 44.000 0.00 0.00 33.62 1.75
142 143 1.787155 GTGCTGTTGTACTCGTCAGTG 59.213 52.381 0.00 0.00 33.62 3.66
148 149 1.663388 TGCCGTGCTGTTGTACTCG 60.663 57.895 0.00 0.00 0.00 4.18
151 152 1.278637 GTGTGCCGTGCTGTTGTAC 59.721 57.895 0.00 0.00 0.00 2.90
154 155 3.964875 GGGTGTGCCGTGCTGTTG 61.965 66.667 0.00 0.00 34.97 3.33
163 164 1.675641 CCAGTAGCTTGGGTGTGCC 60.676 63.158 0.00 0.00 34.46 5.01
164 165 2.335712 GCCAGTAGCTTGGGTGTGC 61.336 63.158 6.57 0.00 38.72 4.57
165 166 0.322816 ATGCCAGTAGCTTGGGTGTG 60.323 55.000 6.57 0.00 44.23 3.82
166 167 0.035056 GATGCCAGTAGCTTGGGTGT 60.035 55.000 6.57 0.00 44.23 4.16
167 168 0.035152 TGATGCCAGTAGCTTGGGTG 60.035 55.000 6.57 0.00 44.23 4.61
181 182 0.679002 ATGTGTGTCCCAGCTGATGC 60.679 55.000 17.39 4.82 40.05 3.91
182 183 1.092348 CATGTGTGTCCCAGCTGATG 58.908 55.000 17.39 6.04 0.00 3.07
189 190 0.178967 ATGCAACCATGTGTGTCCCA 60.179 50.000 0.00 0.00 0.00 4.37
190 191 1.472480 GTATGCAACCATGTGTGTCCC 59.528 52.381 0.00 0.00 32.85 4.46
191 192 2.158559 TGTATGCAACCATGTGTGTCC 58.841 47.619 0.00 0.00 32.85 4.02
194 195 2.819019 TCCTTGTATGCAACCATGTGTG 59.181 45.455 0.00 0.00 32.85 3.82
205 206 0.308993 GCCGAGCAATCCTTGTATGC 59.691 55.000 0.00 0.00 40.34 3.14
239 248 2.749621 AGCAATCAATCCTCGGTTGTTC 59.250 45.455 0.00 0.00 0.00 3.18
240 249 2.795329 AGCAATCAATCCTCGGTTGTT 58.205 42.857 0.00 0.00 0.00 2.83
299 310 2.576191 CCCCTCATCCTTCCTGTTGTTA 59.424 50.000 0.00 0.00 0.00 2.41
312 323 3.934962 GCCTCCTCGCCCCTCATC 61.935 72.222 0.00 0.00 0.00 2.92
402 420 3.727726 CCTGGTTGATTTGGTTTGGTTC 58.272 45.455 0.00 0.00 0.00 3.62
450 483 1.728672 GTTCCTACTCCTCCTCGCG 59.271 63.158 0.00 0.00 0.00 5.87
460 493 1.497161 CCATTCCCTCCGTTCCTACT 58.503 55.000 0.00 0.00 0.00 2.57
463 496 2.001269 CCCCATTCCCTCCGTTCCT 61.001 63.158 0.00 0.00 0.00 3.36
464 497 2.595655 CCCCATTCCCTCCGTTCC 59.404 66.667 0.00 0.00 0.00 3.62
465 498 2.595655 CCCCCATTCCCTCCGTTC 59.404 66.667 0.00 0.00 0.00 3.95
484 517 0.108424 CCGAGAAGTGAGAAGCCCTG 60.108 60.000 0.00 0.00 0.00 4.45
485 518 1.893919 GCCGAGAAGTGAGAAGCCCT 61.894 60.000 0.00 0.00 0.00 5.19
779 816 2.433838 GCAGAGCAGCAGAGCGAA 60.434 61.111 0.00 0.00 40.15 4.70
782 819 2.512057 GGAGCAGAGCAGCAGAGC 60.512 66.667 0.00 0.00 36.85 4.09
786 823 3.580100 GACGTGGAGCAGAGCAGCA 62.580 63.158 0.00 0.00 36.85 4.41
787 824 2.813042 GACGTGGAGCAGAGCAGC 60.813 66.667 0.00 0.00 0.00 5.25
818 863 1.926665 TCTCAGCTCTCCTCTTACCCT 59.073 52.381 0.00 0.00 0.00 4.34
819 864 2.445682 TCTCAGCTCTCCTCTTACCC 57.554 55.000 0.00 0.00 0.00 3.69
820 865 3.626930 TCTTCTCAGCTCTCCTCTTACC 58.373 50.000 0.00 0.00 0.00 2.85
821 866 4.523083 TCTCTTCTCAGCTCTCCTCTTAC 58.477 47.826 0.00 0.00 0.00 2.34
826 871 2.172505 TCGATCTCTTCTCAGCTCTCCT 59.827 50.000 0.00 0.00 0.00 3.69
827 872 2.571212 TCGATCTCTTCTCAGCTCTCC 58.429 52.381 0.00 0.00 0.00 3.71
874 937 1.225637 CGTACACGAAACATGCGGC 60.226 57.895 0.00 0.00 43.02 6.53
880 943 0.607112 TATGGGCCGTACACGAAACA 59.393 50.000 0.00 0.00 43.02 2.83
884 947 0.671796 CTGATATGGGCCGTACACGA 59.328 55.000 7.83 0.00 43.02 4.35
885 948 0.944311 GCTGATATGGGCCGTACACG 60.944 60.000 7.83 0.26 39.44 4.49
886 949 0.602905 GGCTGATATGGGCCGTACAC 60.603 60.000 7.83 6.25 38.91 2.90
913 980 3.383825 AGACGAGACGGCAAGGTTTATAT 59.616 43.478 0.00 0.00 37.34 0.86
933 1000 0.745128 GAAGAGAGGGCGAGACGAGA 60.745 60.000 0.00 0.00 0.00 4.04
934 1001 1.720694 GGAAGAGAGGGCGAGACGAG 61.721 65.000 0.00 0.00 0.00 4.18
935 1002 1.749638 GGAAGAGAGGGCGAGACGA 60.750 63.158 0.00 0.00 0.00 4.20
936 1003 1.720694 GAGGAAGAGAGGGCGAGACG 61.721 65.000 0.00 0.00 0.00 4.18
937 1004 0.395173 AGAGGAAGAGAGGGCGAGAC 60.395 60.000 0.00 0.00 0.00 3.36
1220 1296 2.516048 CTTCTCCTCCGGGTCCTCCA 62.516 65.000 0.00 0.00 34.36 3.86
1301 1395 2.434359 CCTTCGACGCAGGTTCCC 60.434 66.667 5.27 0.00 0.00 3.97
1422 1516 2.470286 GACTTCTTGTTCGCGGCG 59.530 61.111 17.70 17.70 0.00 6.46
1443 1537 3.689002 CTGCTTCCCCGGCTCTTCC 62.689 68.421 0.00 0.00 0.00 3.46
1445 1539 3.721706 CCTGCTTCCCCGGCTCTT 61.722 66.667 0.00 0.00 0.00 2.85
1466 1560 0.601046 CTCAGCACCGTCAGCTTCAA 60.601 55.000 0.00 0.00 41.14 2.69
1467 1561 1.005748 CTCAGCACCGTCAGCTTCA 60.006 57.895 0.00 0.00 41.14 3.02
1473 1567 2.203640 AGGTCCTCAGCACCGTCA 60.204 61.111 0.00 0.00 39.13 4.35
1485 1579 2.039624 TCCAGCTCCTCCAGGTCC 59.960 66.667 0.00 0.00 36.34 4.46
1596 1693 3.474570 GCCTCCGCCTCCATCAGT 61.475 66.667 0.00 0.00 0.00 3.41
1638 1735 4.067512 TCCTGCTCCTCCGCCTCT 62.068 66.667 0.00 0.00 0.00 3.69
1648 1745 1.374758 CCACTTCCACGTCCTGCTC 60.375 63.158 0.00 0.00 0.00 4.26
1695 1792 0.242825 TCGGAGCGTTAACTCACCTG 59.757 55.000 9.85 4.63 38.50 4.00
1717 1814 3.118956 ACAAAAGCACCAAATTCGACCAA 60.119 39.130 0.00 0.00 0.00 3.67
1718 1815 2.428890 ACAAAAGCACCAAATTCGACCA 59.571 40.909 0.00 0.00 0.00 4.02
1719 1816 2.794350 CACAAAAGCACCAAATTCGACC 59.206 45.455 0.00 0.00 0.00 4.79
1720 1817 3.443976 ACACAAAAGCACCAAATTCGAC 58.556 40.909 0.00 0.00 0.00 4.20
1721 1818 3.791973 ACACAAAAGCACCAAATTCGA 57.208 38.095 0.00 0.00 0.00 3.71
1722 1819 5.277825 TCTAACACAAAAGCACCAAATTCG 58.722 37.500 0.00 0.00 0.00 3.34
1723 1820 7.713764 ATTCTAACACAAAAGCACCAAATTC 57.286 32.000 0.00 0.00 0.00 2.17
1726 1823 6.322712 AGGTATTCTAACACAAAAGCACCAAA 59.677 34.615 0.00 0.00 0.00 3.28
1805 1902 1.063166 GCAGCAACGGCATCTTAGC 59.937 57.895 0.00 0.00 44.61 3.09
1806 1903 0.804364 TTGCAGCAACGGCATCTTAG 59.196 50.000 2.83 0.00 44.61 2.18
1828 1927 5.698545 GCTATGCAACTATCTCCGATTTTCT 59.301 40.000 0.00 0.00 0.00 2.52
1851 1950 1.014564 GCTCACCTCTACCAACGTGC 61.015 60.000 0.00 0.00 0.00 5.34
1881 1980 3.939592 TCCGTCGCCTATATGACTATGAG 59.060 47.826 0.00 0.00 32.93 2.90
1882 1981 3.946606 TCCGTCGCCTATATGACTATGA 58.053 45.455 0.00 0.00 32.93 2.15
1900 1999 5.985530 TCACTAGAGCATTTACAATGATCCG 59.014 40.000 10.37 5.84 35.24 4.18
1913 2012 1.871418 TCCAAGCCTCACTAGAGCAT 58.129 50.000 0.00 0.00 40.68 3.79
1959 2058 5.659463 TGAAGGCATTTACAATGTTATGGC 58.341 37.500 19.56 19.56 42.08 4.40
1960 2059 6.925165 GGATGAAGGCATTTACAATGTTATGG 59.075 38.462 0.00 0.00 34.11 2.74
2029 2130 8.607459 CAAACTAGATAACCAGATAGTTGCTTG 58.393 37.037 0.00 0.00 38.23 4.01
2138 2239 5.610398 CTTGCCAAAAACAACCCTAGAAAT 58.390 37.500 0.00 0.00 0.00 2.17
2160 2262 2.106566 ACACCTCATCGAGATTCAGCT 58.893 47.619 0.00 0.00 0.00 4.24
2242 2344 6.515272 AGATTGTGTTCACTGAAACAAGTT 57.485 33.333 17.14 8.10 40.62 2.66
2373 2475 0.530650 AACTCACCTATCATGCGGCG 60.531 55.000 0.51 0.51 0.00 6.46
2375 2477 3.248602 GCTTTAACTCACCTATCATGCGG 59.751 47.826 0.00 0.00 0.00 5.69
2380 2482 8.372459 TCTTGTAAAGCTTTAACTCACCTATCA 58.628 33.333 20.22 7.49 45.70 2.15
2399 2501 6.016610 GGAGCACCACAACTTTTATCTTGTAA 60.017 38.462 0.00 0.00 35.97 2.41
2402 2504 4.278170 TGGAGCACCACAACTTTTATCTTG 59.722 41.667 0.00 0.00 41.77 3.02
2404 2506 4.098914 TGGAGCACCACAACTTTTATCT 57.901 40.909 0.00 0.00 41.77 1.98
2409 2511 2.143876 ACTTGGAGCACCACAACTTT 57.856 45.000 0.85 0.00 46.80 2.66
2411 2513 2.047061 TCTACTTGGAGCACCACAACT 58.953 47.619 0.85 0.00 46.80 3.16
2415 2517 1.065854 AGCATCTACTTGGAGCACCAC 60.066 52.381 0.85 0.00 46.80 4.16
2420 2522 5.467063 GGTACAAATAGCATCTACTTGGAGC 59.533 44.000 0.00 0.00 0.00 4.70
2423 2525 5.237344 GCAGGTACAAATAGCATCTACTTGG 59.763 44.000 0.00 0.00 0.00 3.61
2424 2526 5.817296 TGCAGGTACAAATAGCATCTACTTG 59.183 40.000 0.00 0.00 0.00 3.16
2426 2528 5.363868 TCTGCAGGTACAAATAGCATCTACT 59.636 40.000 15.13 0.00 34.35 2.57
2427 2529 5.601662 TCTGCAGGTACAAATAGCATCTAC 58.398 41.667 15.13 0.00 34.35 2.59
2428 2530 5.869649 TCTGCAGGTACAAATAGCATCTA 57.130 39.130 15.13 0.00 34.35 1.98
2429 2531 4.760530 TCTGCAGGTACAAATAGCATCT 57.239 40.909 15.13 0.00 34.35 2.90
2430 2532 4.878397 ACTTCTGCAGGTACAAATAGCATC 59.122 41.667 15.13 0.00 34.35 3.91
2431 2533 4.848357 ACTTCTGCAGGTACAAATAGCAT 58.152 39.130 15.13 0.00 34.35 3.79
2433 2535 4.455877 ACAACTTCTGCAGGTACAAATAGC 59.544 41.667 15.13 0.00 0.00 2.97
2434 2536 5.700832 TCACAACTTCTGCAGGTACAAATAG 59.299 40.000 15.13 1.78 0.00 1.73
2436 2538 4.275936 GTCACAACTTCTGCAGGTACAAAT 59.724 41.667 15.13 0.00 0.00 2.32
2437 2539 3.625764 GTCACAACTTCTGCAGGTACAAA 59.374 43.478 15.13 0.00 0.00 2.83
2439 2541 2.434336 AGTCACAACTTCTGCAGGTACA 59.566 45.455 15.13 0.00 28.74 2.90
2442 2544 2.717639 AAGTCACAACTTCTGCAGGT 57.282 45.000 15.13 1.12 42.10 4.00
2443 2545 4.130118 AGTAAAGTCACAACTTCTGCAGG 58.870 43.478 15.13 0.36 45.07 4.85
2445 2547 5.645929 TCAAAGTAAAGTCACAACTTCTGCA 59.354 36.000 0.00 0.00 45.07 4.41
2446 2548 6.119144 TCAAAGTAAAGTCACAACTTCTGC 57.881 37.500 0.00 0.00 45.07 4.26
2447 2549 7.308782 ACTCAAAGTAAAGTCACAACTTCTG 57.691 36.000 0.00 0.00 45.07 3.02
2448 2550 7.824779 AGAACTCAAAGTAAAGTCACAACTTCT 59.175 33.333 0.00 0.00 45.07 2.85
2452 2554 8.965986 AAAAGAACTCAAAGTAAAGTCACAAC 57.034 30.769 0.00 0.00 0.00 3.32
2453 2555 9.010029 AGAAAAGAACTCAAAGTAAAGTCACAA 57.990 29.630 0.00 0.00 0.00 3.33
2454 2556 8.561738 AGAAAAGAACTCAAAGTAAAGTCACA 57.438 30.769 0.00 0.00 0.00 3.58
2456 2558 8.674607 GGAAGAAAAGAACTCAAAGTAAAGTCA 58.325 33.333 0.00 0.00 0.00 3.41
2463 2807 7.112779 TCTCTTGGAAGAAAAGAACTCAAAGT 58.887 34.615 0.00 0.00 33.40 2.66
2464 2808 7.559590 TCTCTTGGAAGAAAAGAACTCAAAG 57.440 36.000 0.00 0.00 33.40 2.77
2466 2810 7.938140 TTTCTCTTGGAAGAAAAGAACTCAA 57.062 32.000 0.00 0.00 41.17 3.02
2484 2828 3.452627 ACACAGACCAGACAGTTTTCTCT 59.547 43.478 0.00 0.00 0.00 3.10
2487 2831 2.614057 CCACACAGACCAGACAGTTTTC 59.386 50.000 0.00 0.00 0.00 2.29
2496 2840 4.132336 CCATATCATTCCACACAGACCAG 58.868 47.826 0.00 0.00 0.00 4.00
2525 2879 4.949856 AGGGAGTACAACCATAAAGCAATG 59.050 41.667 8.35 0.00 0.00 2.82
2534 2888 1.553704 GAACGGAGGGAGTACAACCAT 59.446 52.381 8.35 2.66 0.00 3.55
2541 2895 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2542 2896 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2543 2897 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2544 2898 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2545 2899 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2546 2900 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2547 2901 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2563 2917 9.442047 CATTTAGTGGAATCTCTACAAAGACTT 57.558 33.333 0.00 0.00 29.47 3.01
2581 2935 6.334989 TGTTCCGTATGTAGTCCATTTAGTG 58.665 40.000 0.00 0.00 34.86 2.74
2582 2936 6.534475 TGTTCCGTATGTAGTCCATTTAGT 57.466 37.500 0.00 0.00 34.86 2.24
2583 2937 7.837202 TTTGTTCCGTATGTAGTCCATTTAG 57.163 36.000 0.00 0.00 34.86 1.85
2584 2938 8.670135 CATTTTGTTCCGTATGTAGTCCATTTA 58.330 33.333 0.00 0.00 34.86 1.40
2585 2939 7.392113 TCATTTTGTTCCGTATGTAGTCCATTT 59.608 33.333 0.00 0.00 34.86 2.32
2586 2940 6.882140 TCATTTTGTTCCGTATGTAGTCCATT 59.118 34.615 0.00 0.00 34.86 3.16
2587 2941 6.411376 TCATTTTGTTCCGTATGTAGTCCAT 58.589 36.000 0.00 0.00 37.58 3.41
2588 2942 5.795972 TCATTTTGTTCCGTATGTAGTCCA 58.204 37.500 0.00 0.00 0.00 4.02
2589 2943 6.730960 TTCATTTTGTTCCGTATGTAGTCC 57.269 37.500 0.00 0.00 0.00 3.85
2590 2944 7.970384 TCATTCATTTTGTTCCGTATGTAGTC 58.030 34.615 0.00 0.00 0.00 2.59
2591 2945 7.915293 TCATTCATTTTGTTCCGTATGTAGT 57.085 32.000 0.00 0.00 0.00 2.73
2592 2946 9.438291 GATTCATTCATTTTGTTCCGTATGTAG 57.562 33.333 0.00 0.00 0.00 2.74
2593 2947 9.173021 AGATTCATTCATTTTGTTCCGTATGTA 57.827 29.630 0.00 0.00 0.00 2.29
2594 2948 8.055279 AGATTCATTCATTTTGTTCCGTATGT 57.945 30.769 0.00 0.00 0.00 2.29
2595 2949 9.438291 GTAGATTCATTCATTTTGTTCCGTATG 57.562 33.333 0.00 0.00 0.00 2.39
2596 2950 9.173021 TGTAGATTCATTCATTTTGTTCCGTAT 57.827 29.630 0.00 0.00 0.00 3.06
2597 2951 8.447833 GTGTAGATTCATTCATTTTGTTCCGTA 58.552 33.333 0.00 0.00 0.00 4.02
2598 2952 7.174946 AGTGTAGATTCATTCATTTTGTTCCGT 59.825 33.333 0.00 0.00 0.00 4.69
2599 2953 7.530010 AGTGTAGATTCATTCATTTTGTTCCG 58.470 34.615 0.00 0.00 0.00 4.30
2622 2976 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
2625 2979 9.511144 CGTACGGATGTATATAGATGCATTTTA 57.489 33.333 7.57 0.00 38.38 1.52
2626 2980 8.033038 ACGTACGGATGTATATAGATGCATTTT 58.967 33.333 21.06 0.00 38.38 1.82
2627 2981 7.488150 CACGTACGGATGTATATAGATGCATTT 59.512 37.037 21.06 0.00 38.38 2.32
2628 2982 6.972901 CACGTACGGATGTATATAGATGCATT 59.027 38.462 21.06 1.23 38.38 3.56
2629 2983 6.459710 CCACGTACGGATGTATATAGATGCAT 60.460 42.308 21.06 0.00 40.68 3.96
2630 2984 5.163693 CCACGTACGGATGTATATAGATGCA 60.164 44.000 21.06 0.00 32.11 3.96
2631 2985 5.163683 ACCACGTACGGATGTATATAGATGC 60.164 44.000 21.06 0.00 32.11 3.91
2632 2986 6.432607 ACCACGTACGGATGTATATAGATG 57.567 41.667 21.06 3.48 32.11 2.90
2633 2987 7.458409 AAACCACGTACGGATGTATATAGAT 57.542 36.000 21.06 0.00 32.11 1.98
2634 2988 6.882610 AAACCACGTACGGATGTATATAGA 57.117 37.500 21.06 0.00 32.11 1.98
2635 2989 9.926751 CTATAAACCACGTACGGATGTATATAG 57.073 37.037 21.06 17.33 32.11 1.31
2636 2990 9.448438 ACTATAAACCACGTACGGATGTATATA 57.552 33.333 21.06 12.77 32.11 0.86
2637 2991 8.239314 CACTATAAACCACGTACGGATGTATAT 58.761 37.037 21.06 12.35 32.11 0.86
2638 2992 7.308529 CCACTATAAACCACGTACGGATGTATA 60.309 40.741 21.06 11.65 32.11 1.47
2639 2993 6.441274 CACTATAAACCACGTACGGATGTAT 58.559 40.000 21.06 11.15 32.11 2.29
2640 2994 5.221028 CCACTATAAACCACGTACGGATGTA 60.221 44.000 21.06 4.19 0.00 2.29
2641 2995 4.440525 CCACTATAAACCACGTACGGATGT 60.441 45.833 21.06 10.36 0.00 3.06
2642 2996 4.046462 CCACTATAAACCACGTACGGATG 58.954 47.826 21.06 9.60 0.00 3.51
2643 2997 3.953612 TCCACTATAAACCACGTACGGAT 59.046 43.478 21.06 0.82 0.00 4.18
2644 2998 3.128589 GTCCACTATAAACCACGTACGGA 59.871 47.826 21.06 0.00 0.00 4.69
2645 2999 3.129287 AGTCCACTATAAACCACGTACGG 59.871 47.826 21.06 8.46 0.00 4.02
2646 3000 4.095483 AGAGTCCACTATAAACCACGTACG 59.905 45.833 15.01 15.01 0.00 3.67
2647 3001 5.356470 AGAGAGTCCACTATAAACCACGTAC 59.644 44.000 0.00 0.00 0.00 3.67
2648 3002 5.503927 AGAGAGTCCACTATAAACCACGTA 58.496 41.667 0.00 0.00 0.00 3.57
2649 3003 4.342359 AGAGAGTCCACTATAAACCACGT 58.658 43.478 0.00 0.00 0.00 4.49
2650 3004 4.985538 AGAGAGTCCACTATAAACCACG 57.014 45.455 0.00 0.00 0.00 4.94
2651 3005 9.968870 CTTTATAGAGAGTCCACTATAAACCAC 57.031 37.037 22.43 0.00 41.95 4.16
2652 3006 9.931698 TCTTTATAGAGAGTCCACTATAAACCA 57.068 33.333 22.43 15.23 41.95 3.67
2676 3030 9.453830 ACTCCCTCCATTCTTAAATATAAGTCT 57.546 33.333 0.00 0.00 39.65 3.24
2714 3068 2.355310 CCACCGCACTCCTTACCAATTA 60.355 50.000 0.00 0.00 0.00 1.40
2731 3085 0.035152 TGATCTGCACCATGTCCACC 60.035 55.000 0.00 0.00 0.00 4.61
2734 3088 0.107312 AGCTGATCTGCACCATGTCC 60.107 55.000 24.33 0.00 34.99 4.02
2739 3093 3.920231 ATAAGAAGCTGATCTGCACCA 57.080 42.857 24.33 10.41 34.99 4.17
2744 3098 6.649973 CCAACATCCTATAAGAAGCTGATCTG 59.350 42.308 0.00 0.00 0.00 2.90
2752 3106 4.514441 CAGCTGCCAACATCCTATAAGAAG 59.486 45.833 0.00 0.00 0.00 2.85
2788 3142 2.727123 TGCTCACTGGAACAAGGAAA 57.273 45.000 0.00 0.00 38.70 3.13
2798 3152 5.940470 ACCTTCTTTATACTTTGCTCACTGG 59.060 40.000 0.00 0.00 0.00 4.00
2889 3243 0.898320 AGTCCAGCGCAGTGATACTT 59.102 50.000 11.47 0.00 0.00 2.24
2934 3288 3.205056 TGAGAATGGCAATACCCCTGAAT 59.795 43.478 0.00 0.00 37.83 2.57
2999 3353 0.817229 TGCATGAACAGGAACGCACA 60.817 50.000 0.00 0.00 0.00 4.57
3000 3354 0.310543 TTGCATGAACAGGAACGCAC 59.689 50.000 0.00 0.00 0.00 5.34
3100 3557 7.744087 ACATAGAGTTAGTTGCATCAAAACA 57.256 32.000 12.69 0.00 0.00 2.83
3109 3566 5.360591 ACTGCCATACATAGAGTTAGTTGC 58.639 41.667 0.00 0.00 0.00 4.17
3119 3576 5.016051 ACAAGTCAGACTGCCATACATAG 57.984 43.478 3.05 0.00 0.00 2.23
3142 3601 6.591935 AGAATTTCTACACCAGAACAGTGAA 58.408 36.000 0.00 0.00 43.09 3.18
3151 3610 9.981114 AAATAAAACCAAGAATTTCTACACCAG 57.019 29.630 0.00 0.00 0.00 4.00
3368 3827 3.723260 TGACAATGACTGAAACACGCTA 58.277 40.909 0.00 0.00 0.00 4.26
3409 3868 6.476378 AGTTGTACCACAAGATTCAAGCTAT 58.524 36.000 0.00 0.00 39.00 2.97
3438 3897 1.840181 TTGTAGATAAGAGCGCTGCG 58.160 50.000 18.48 19.17 0.00 5.18
3439 3898 4.802876 AAATTGTAGATAAGAGCGCTGC 57.197 40.909 18.48 6.71 0.00 5.25
3440 3899 7.470289 AACTAAATTGTAGATAAGAGCGCTG 57.530 36.000 18.48 0.00 0.00 5.18
3441 3900 8.391106 CAAAACTAAATTGTAGATAAGAGCGCT 58.609 33.333 11.27 11.27 0.00 5.92
3442 3901 8.175716 ACAAAACTAAATTGTAGATAAGAGCGC 58.824 33.333 0.00 0.00 39.14 5.92
3466 3942 4.072131 GCTGACTCCAATGGACTAAAACA 58.928 43.478 0.00 0.00 0.00 2.83
3467 3943 4.154918 CAGCTGACTCCAATGGACTAAAAC 59.845 45.833 8.42 0.00 0.00 2.43
3490 3966 3.497879 GCATCTTGCGGTGGTACC 58.502 61.111 4.43 4.43 31.71 3.34
3525 4001 4.494484 TGTGAATTACTCATGACTCGTGG 58.506 43.478 0.00 0.00 36.14 4.94
3562 4038 9.944663 CAACTTACAAACAACTCTAAAAGCATA 57.055 29.630 0.00 0.00 0.00 3.14
3582 4058 7.696992 AAAAACTCTGTCAGGTTTCAACTTA 57.303 32.000 15.47 0.00 41.57 2.24
3606 4082 1.855213 GCGGCATCAGTCTGCACAAA 61.855 55.000 0.00 0.00 44.12 2.83
3626 4102 0.035176 GAGCCAATGCCCTTTTTGCA 59.965 50.000 0.00 0.00 43.97 4.08
3675 4151 7.848128 TGAAACAAACAAGGGGTAACATTAAA 58.152 30.769 0.00 0.00 39.74 1.52
3776 4253 0.034337 TGACCTTTTCGCGGTTAGCT 59.966 50.000 6.13 0.00 45.59 3.32
4070 4547 5.243426 TCTGGTTTTCTTTCTTTGGAACG 57.757 39.130 0.00 0.00 0.00 3.95
4109 4586 5.633830 TCTTTGATGAATCTGAAGTTGCC 57.366 39.130 0.00 0.00 0.00 4.52
4175 4652 6.097412 CCTTCTTATTAGGGCAAGCAAAAGAT 59.903 38.462 0.00 0.00 0.00 2.40
4268 4745 1.523501 CACATTCATAACACGTGCGC 58.476 50.000 17.22 0.00 0.00 6.09
4373 4850 0.250252 TCTTCGATGCTGTTGTGGCA 60.250 50.000 0.00 0.00 44.05 4.92
4481 4958 5.645497 GGCAGATTCAGTATTGGCCTTATAG 59.355 44.000 3.32 0.00 34.59 1.31
4482 4959 5.073008 TGGCAGATTCAGTATTGGCCTTATA 59.927 40.000 3.32 0.00 36.93 0.98
4733 5210 1.699634 ACAGGTTTAGCTGCTTCCTCA 59.300 47.619 7.79 0.00 0.00 3.86
4781 5258 7.041644 TCACTAGGTTTATTTTCACCAGAAACG 60.042 37.037 0.00 0.00 43.09 3.60
5059 5542 7.921786 TGACAAGGGTAAATGAAAGATACAG 57.078 36.000 0.00 0.00 0.00 2.74
5176 5664 5.473039 AGTTAATGAAGCAAGCAATTCACC 58.527 37.500 0.00 0.00 38.19 4.02
5185 5795 7.149569 TCTCCATTTGAGTTAATGAAGCAAG 57.850 36.000 0.00 0.00 42.12 4.01
5228 5838 5.786401 AATGCTTTGTAAGATCTCACGTC 57.214 39.130 0.00 0.00 0.00 4.34
5370 6007 2.292267 CATGTTGGGAGTATCAGGCAC 58.708 52.381 0.00 0.00 36.25 5.01
5382 6019 2.981560 GACGGCACTGCATGTTGGG 61.982 63.158 2.82 0.00 0.00 4.12
5454 6095 1.458639 GCACTTTGCTTCTGCCTGGT 61.459 55.000 0.00 0.00 40.96 4.00
5573 6214 7.029563 TGAAACTTGCTTTTTGAGAAAGAGTC 58.970 34.615 0.00 0.00 42.88 3.36
5787 6437 3.953712 TCTCACCTCATTACAGCGAAA 57.046 42.857 0.00 0.00 0.00 3.46
5790 6440 3.170791 ACATCTCACCTCATTACAGCG 57.829 47.619 0.00 0.00 0.00 5.18
5810 6460 1.951209 TGTTCTCAGTGCCCCAGATA 58.049 50.000 0.00 0.00 0.00 1.98
5814 6464 2.171237 CAGATATGTTCTCAGTGCCCCA 59.829 50.000 0.00 0.00 29.93 4.96
5815 6465 2.486191 CCAGATATGTTCTCAGTGCCCC 60.486 54.545 0.00 0.00 29.93 5.80
5816 6466 2.171448 ACCAGATATGTTCTCAGTGCCC 59.829 50.000 0.00 0.00 29.93 5.36
5817 6467 3.201290 CACCAGATATGTTCTCAGTGCC 58.799 50.000 0.00 0.00 32.08 5.01
5818 6468 2.611292 GCACCAGATATGTTCTCAGTGC 59.389 50.000 12.52 12.52 46.46 4.40
5819 6469 3.865446 TGCACCAGATATGTTCTCAGTG 58.135 45.455 0.00 0.00 38.20 3.66
5820 6470 4.767578 ATGCACCAGATATGTTCTCAGT 57.232 40.909 0.00 0.00 29.93 3.41
5821 6471 4.275196 CCAATGCACCAGATATGTTCTCAG 59.725 45.833 0.00 0.00 29.93 3.35
5822 6472 4.201657 CCAATGCACCAGATATGTTCTCA 58.798 43.478 0.00 0.00 29.93 3.27
5823 6473 3.567164 CCCAATGCACCAGATATGTTCTC 59.433 47.826 0.00 0.00 29.93 2.87
5824 6474 3.559069 CCCAATGCACCAGATATGTTCT 58.441 45.455 0.00 0.00 33.90 3.01
5825 6475 2.624838 CCCCAATGCACCAGATATGTTC 59.375 50.000 0.00 0.00 0.00 3.18
5826 6476 2.669781 CCCCAATGCACCAGATATGTT 58.330 47.619 0.00 0.00 0.00 2.71
5827 6477 1.755265 GCCCCAATGCACCAGATATGT 60.755 52.381 0.00 0.00 0.00 2.29
5828 6478 0.963962 GCCCCAATGCACCAGATATG 59.036 55.000 0.00 0.00 0.00 1.78
5829 6479 0.855598 AGCCCCAATGCACCAGATAT 59.144 50.000 0.00 0.00 0.00 1.63
5830 6480 0.630673 AAGCCCCAATGCACCAGATA 59.369 50.000 0.00 0.00 0.00 1.98
5831 6481 0.974010 CAAGCCCCAATGCACCAGAT 60.974 55.000 0.00 0.00 0.00 2.90
5832 6482 1.607178 CAAGCCCCAATGCACCAGA 60.607 57.895 0.00 0.00 0.00 3.86
5833 6483 2.975536 CAAGCCCCAATGCACCAG 59.024 61.111 0.00 0.00 0.00 4.00
5834 6484 3.312718 GCAAGCCCCAATGCACCA 61.313 61.111 0.00 0.00 42.12 4.17
5835 6485 4.440127 CGCAAGCCCCAATGCACC 62.440 66.667 0.00 0.00 42.68 5.01
5836 6486 4.440127 CCGCAAGCCCCAATGCAC 62.440 66.667 0.00 0.00 42.68 4.57
5837 6487 4.992740 ACCGCAAGCCCCAATGCA 62.993 61.111 0.00 0.00 42.68 3.96
5838 6488 4.440127 CACCGCAAGCCCCAATGC 62.440 66.667 0.00 0.00 39.17 3.56
5839 6489 4.440127 GCACCGCAAGCCCCAATG 62.440 66.667 0.00 0.00 0.00 2.82
5840 6490 4.992740 TGCACCGCAAGCCCCAAT 62.993 61.111 0.00 0.00 34.76 3.16
5845 6495 4.715523 TAGGGTGCACCGCAAGCC 62.716 66.667 29.08 14.36 46.96 4.35
5846 6496 3.431725 GTAGGGTGCACCGCAAGC 61.432 66.667 29.08 15.11 46.96 4.01
5847 6497 1.895020 TAGGTAGGGTGCACCGCAAG 61.895 60.000 29.08 0.00 46.96 4.01
5848 6498 1.895020 CTAGGTAGGGTGCACCGCAA 61.895 60.000 29.08 14.26 46.96 4.85
5849 6499 2.284039 TAGGTAGGGTGCACCGCA 60.284 61.111 29.08 16.58 46.96 5.69
5850 6500 2.499685 CTAGGTAGGGTGCACCGC 59.500 66.667 29.08 21.19 46.96 5.68
5851 6501 3.217231 CCTAGGTAGGGTGCACCG 58.783 66.667 29.08 13.42 46.96 4.94
5868 6518 2.612672 GGACGCTTCTAAATAGGGCAAC 59.387 50.000 0.00 0.00 0.00 4.17
5869 6519 2.237643 TGGACGCTTCTAAATAGGGCAA 59.762 45.455 0.00 0.00 0.00 4.52
5870 6520 1.834896 TGGACGCTTCTAAATAGGGCA 59.165 47.619 0.00 0.00 0.00 5.36
5871 6521 2.614829 TGGACGCTTCTAAATAGGGC 57.385 50.000 0.00 0.00 0.00 5.19
5872 6522 5.890424 TTTTTGGACGCTTCTAAATAGGG 57.110 39.130 2.58 0.00 32.72 3.53
5873 6523 6.972901 GGAATTTTTGGACGCTTCTAAATAGG 59.027 38.462 2.58 0.00 32.72 2.57
5874 6524 6.687105 CGGAATTTTTGGACGCTTCTAAATAG 59.313 38.462 2.58 0.00 32.72 1.73
5875 6525 6.372103 TCGGAATTTTTGGACGCTTCTAAATA 59.628 34.615 2.58 0.00 32.72 1.40
5876 6526 5.182380 TCGGAATTTTTGGACGCTTCTAAAT 59.818 36.000 2.58 0.00 32.72 1.40
5877 6527 4.515944 TCGGAATTTTTGGACGCTTCTAAA 59.484 37.500 0.00 0.00 30.82 1.85
5878 6528 4.066490 TCGGAATTTTTGGACGCTTCTAA 58.934 39.130 0.00 0.00 0.00 2.10
5879 6529 3.666274 TCGGAATTTTTGGACGCTTCTA 58.334 40.909 0.00 0.00 0.00 2.10
5880 6530 2.500229 TCGGAATTTTTGGACGCTTCT 58.500 42.857 0.00 0.00 0.00 2.85
5881 6531 2.981400 TCGGAATTTTTGGACGCTTC 57.019 45.000 0.00 0.00 0.00 3.86
5882 6532 3.719173 TTTCGGAATTTTTGGACGCTT 57.281 38.095 0.00 0.00 0.00 4.68
5883 6533 3.719173 TTTTCGGAATTTTTGGACGCT 57.281 38.095 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.