Multiple sequence alignment - TraesCS1D01G040900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G040900 chr1D 100.000 5258 0 0 1 5258 19898110 19903367 0.000000e+00 9710.0
1 TraesCS1D01G040900 chr1D 80.269 223 34 4 5045 5257 391158863 391158641 5.450000e-35 159.0
2 TraesCS1D01G040900 chr1D 89.873 79 5 1 1018 1093 19899202 19899280 1.210000e-16 99.0
3 TraesCS1D01G040900 chr1B 91.726 1837 117 21 3036 4857 32060796 32062612 0.000000e+00 2518.0
4 TraesCS1D01G040900 chr1B 91.245 1839 122 21 3036 4857 31969097 31970913 0.000000e+00 2468.0
5 TraesCS1D01G040900 chr1B 93.734 1548 79 10 1471 3008 32059259 32060798 0.000000e+00 2305.0
6 TraesCS1D01G040900 chr1B 93.540 1548 80 11 1471 3008 31967562 31969099 0.000000e+00 2287.0
7 TraesCS1D01G040900 chr1B 91.087 1178 70 11 3324 4495 31908313 31909461 0.000000e+00 1561.0
8 TraesCS1D01G040900 chr1B 86.960 1365 101 40 1 1297 31966208 31967563 0.000000e+00 1463.0
9 TraesCS1D01G040900 chr1B 88.387 930 76 19 398 1297 32058333 32059260 0.000000e+00 1090.0
10 TraesCS1D01G040900 chr1B 91.829 771 61 2 1096 1865 31906354 31907123 0.000000e+00 1074.0
11 TraesCS1D01G040900 chr1B 87.398 857 82 14 4005 4843 31911122 31911970 0.000000e+00 961.0
12 TraesCS1D01G040900 chr1B 91.433 642 23 7 2479 3088 31907672 31908313 0.000000e+00 852.0
13 TraesCS1D01G040900 chr1B 88.991 436 26 10 674 1102 31905723 31906143 2.170000e-143 520.0
14 TraesCS1D01G040900 chr1B 86.667 420 23 15 213 599 31905301 31905720 8.090000e-118 435.0
15 TraesCS1D01G040900 chr1B 80.996 542 76 15 4325 4858 32086166 32086688 6.340000e-109 405.0
16 TraesCS1D01G040900 chr1B 94.400 250 14 0 3660 3909 32065322 32065571 8.260000e-103 385.0
17 TraesCS1D01G040900 chr1B 93.281 253 15 1 3659 3909 31913591 31913843 6.430000e-99 372.0
18 TraesCS1D01G040900 chr1B 93.227 251 17 0 3659 3909 31972376 31972626 2.310000e-98 370.0
19 TraesCS1D01G040900 chr1B 91.304 253 20 1 3659 3909 32085613 32085865 1.400000e-90 344.0
20 TraesCS1D01G040900 chr1B 89.362 235 13 2 4028 4250 31913842 31914076 8.620000e-73 285.0
21 TraesCS1D01G040900 chr1B 82.477 331 34 12 4530 4847 32137741 32138060 8.680000e-68 268.0
22 TraesCS1D01G040900 chr1B 90.244 123 12 0 173 295 32058025 32058147 1.520000e-35 161.0
23 TraesCS1D01G040900 chr1B 92.405 79 6 0 1093 1171 31967277 31967355 4.300000e-21 113.0
24 TraesCS1D01G040900 chr1B 90.789 76 4 1 1021 1093 31906354 31906429 1.210000e-16 99.0
25 TraesCS1D01G040900 chr1B 89.610 77 5 1 1018 1091 31967355 31967431 1.560000e-15 95.3
26 TraesCS1D01G040900 chr1A 90.893 1735 123 20 3107 4821 21338587 21340306 0.000000e+00 2296.0
27 TraesCS1D01G040900 chr1A 89.264 1779 96 23 1109 2884 21336160 21337846 0.000000e+00 2139.0
28 TraesCS1D01G040900 chr1A 92.373 354 19 4 292 637 21335459 21335812 1.020000e-136 497.0
29 TraesCS1D01G040900 chr1A 88.732 426 23 12 674 1093 21335816 21336222 1.020000e-136 497.0
30 TraesCS1D01G040900 chr1A 86.282 277 13 7 1 263 21335125 21335390 1.440000e-70 278.0
31 TraesCS1D01G040900 chr1A 92.357 157 12 0 2954 3110 21338235 21338391 1.910000e-54 224.0
32 TraesCS1D01G040900 chr1A 90.909 44 2 1 4759 4800 567455645 567455602 2.050000e-04 58.4
33 TraesCS1D01G040900 chr6D 92.041 980 68 7 1914 2887 50777517 50776542 0.000000e+00 1369.0
34 TraesCS1D01G040900 chr6D 84.037 545 61 12 2893 3419 50776242 50775706 7.860000e-138 501.0
35 TraesCS1D01G040900 chr6D 85.261 441 43 15 3462 3898 50775123 50774701 8.090000e-118 435.0
36 TraesCS1D01G040900 chr6D 84.500 200 27 3 1311 1510 50779141 50778946 1.490000e-45 195.0
37 TraesCS1D01G040900 chr6D 96.552 87 3 0 1109 1195 50779794 50779708 1.530000e-30 145.0
38 TraesCS1D01G040900 chr6D 92.754 69 2 1 1028 1093 50779800 50779732 4.330000e-16 97.1
39 TraesCS1D01G040900 chr6B 91.030 981 72 11 1914 2887 120646175 120647146 0.000000e+00 1310.0
40 TraesCS1D01G040900 chr6B 86.130 447 40 11 3468 3898 120649122 120649562 3.710000e-126 462.0
41 TraesCS1D01G040900 chr6B 87.419 310 30 4 3107 3408 120647842 120648150 1.080000e-91 348.0
42 TraesCS1D01G040900 chr6B 88.832 197 20 2 1311 1507 120645046 120645240 1.890000e-59 241.0
43 TraesCS1D01G040900 chr6B 88.535 157 15 2 2954 3110 120647532 120647685 2.500000e-43 187.0
44 TraesCS1D01G040900 chr6B 96.471 85 3 0 1109 1193 120644793 120644877 1.970000e-29 141.0
45 TraesCS1D01G040900 chr6B 85.849 106 8 5 934 1033 120644511 120644615 7.200000e-19 106.0
46 TraesCS1D01G040900 chr6B 92.754 69 2 1 1028 1093 120644787 120644855 4.330000e-16 97.1
47 TraesCS1D01G040900 chr6A 90.817 991 70 15 1903 2887 64258282 64259257 0.000000e+00 1306.0
48 TraesCS1D01G040900 chr6A 85.009 547 56 12 2893 3419 64259557 64260097 2.790000e-147 532.0
49 TraesCS1D01G040900 chr6A 84.773 440 46 15 3462 3898 64260925 64261346 6.300000e-114 422.0
50 TraesCS1D01G040900 chr6A 78.333 600 71 19 4069 4612 64261406 64262002 3.030000e-87 333.0
51 TraesCS1D01G040900 chr6A 96.552 87 3 0 1109 1195 64255505 64255591 1.530000e-30 145.0
52 TraesCS1D01G040900 chr7D 90.274 987 79 11 1914 2887 66826381 66825399 0.000000e+00 1275.0
53 TraesCS1D01G040900 chr7D 96.460 339 10 2 4920 5258 518616297 518615961 4.600000e-155 558.0
54 TraesCS1D01G040900 chr7D 95.575 339 14 1 4920 5258 507238387 507238724 4.630000e-150 542.0
55 TraesCS1D01G040900 chr7D 86.957 414 35 7 3008 3419 66824522 66824126 1.040000e-121 448.0
56 TraesCS1D01G040900 chr7D 84.010 419 44 9 1109 1507 66829049 66828634 1.070000e-101 381.0
57 TraesCS1D01G040900 chr7D 79.767 514 69 20 3952 4447 66823154 66822658 1.810000e-89 340.0
58 TraesCS1D01G040900 chr7D 86.333 300 20 9 3409 3693 66823720 66823427 1.840000e-79 307.0
59 TraesCS1D01G040900 chr7D 94.118 68 1 1 1028 1092 66829055 66828988 3.350000e-17 100.0
60 TraesCS1D01G040900 chr7D 91.525 59 2 2 657 714 619638352 619638296 1.570000e-10 78.7
61 TraesCS1D01G040900 chr7D 84.932 73 9 2 4617 4689 506097058 506097128 7.300000e-09 73.1
62 TraesCS1D01G040900 chr7A 90.734 572 47 4 2319 2887 73807268 73807836 0.000000e+00 758.0
63 TraesCS1D01G040900 chr7A 84.307 548 55 15 2893 3419 73808136 73808673 1.690000e-139 507.0
64 TraesCS1D01G040900 chr7A 87.835 411 45 3 1914 2321 73806767 73807175 1.320000e-130 477.0
65 TraesCS1D01G040900 chr7A 78.077 520 70 26 3949 4447 73846895 73847391 6.660000e-74 289.0
66 TraesCS1D01G040900 chr7A 84.091 308 26 9 3420 3714 73809090 73809387 5.190000e-70 276.0
67 TraesCS1D01G040900 chr7A 79.322 295 38 8 1109 1383 73800260 73800551 8.990000e-43 185.0
68 TraesCS1D01G040900 chr7A 92.188 64 5 0 4859 4922 6153124 6153187 2.020000e-14 91.6
69 TraesCS1D01G040900 chr7A 92.188 64 5 0 4859 4922 6232130 6232193 2.020000e-14 91.6
70 TraesCS1D01G040900 chr7A 90.769 65 6 0 4859 4923 689895881 689895945 2.610000e-13 87.9
71 TraesCS1D01G040900 chr4D 96.154 338 12 1 4921 5258 473867038 473867374 7.700000e-153 551.0
72 TraesCS1D01G040900 chr4D 92.647 68 5 0 4858 4925 503610253 503610186 1.210000e-16 99.0
73 TraesCS1D01G040900 chr2A 92.462 199 14 1 5042 5240 596410985 596411182 3.100000e-72 283.0
74 TraesCS1D01G040900 chr2B 95.312 64 3 0 4862 4925 68609287 68609224 9.320000e-18 102.0
75 TraesCS1D01G040900 chr2B 93.846 65 4 0 4859 4923 98313490 98313554 1.210000e-16 99.0
76 TraesCS1D01G040900 chr2B 92.593 54 3 1 666 719 465805953 465805901 5.650000e-10 76.8
77 TraesCS1D01G040900 chr3D 93.939 66 4 0 4862 4927 558745662 558745597 3.350000e-17 100.0
78 TraesCS1D01G040900 chr3D 92.188 64 3 2 4854 4916 149758698 149758760 7.250000e-14 89.8
79 TraesCS1D01G040900 chr3D 87.879 66 6 2 651 716 549066892 549066955 5.650000e-10 76.8
80 TraesCS1D01G040900 chr3B 89.744 78 6 2 639 716 325848130 325848205 1.210000e-16 99.0
81 TraesCS1D01G040900 chr3B 82.353 85 13 2 650 734 104714898 104714980 7.300000e-09 73.1
82 TraesCS1D01G040900 chr3B 83.544 79 11 2 639 717 325848177 325848101 7.300000e-09 73.1
83 TraesCS1D01G040900 chr5A 92.063 63 2 3 4856 4916 396679719 396679658 9.380000e-13 86.1
84 TraesCS1D01G040900 chr7B 89.231 65 5 2 657 720 245618469 245618532 4.360000e-11 80.5
85 TraesCS1D01G040900 chr3A 83.544 79 10 3 639 716 128148990 128149066 2.630000e-08 71.3
86 TraesCS1D01G040900 chr2D 83.117 77 7 5 651 725 129960272 129960344 1.220000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G040900 chr1D 19898110 19903367 5257 False 9710.000000 9710 100.000000 1 5258 1 chr1D.!!$F1 5257
1 TraesCS1D01G040900 chr1B 32058025 32065571 7546 False 1291.800000 2518 91.698200 173 4857 5 chr1B.!!$F4 4684
2 TraesCS1D01G040900 chr1B 31966208 31972626 6418 False 1132.716667 2468 91.164500 1 4857 6 chr1B.!!$F3 4856
3 TraesCS1D01G040900 chr1B 31905301 31914076 8775 False 684.333333 1561 90.093000 213 4843 9 chr1B.!!$F2 4630
4 TraesCS1D01G040900 chr1B 32085613 32086688 1075 False 374.500000 405 86.150000 3659 4858 2 chr1B.!!$F5 1199
5 TraesCS1D01G040900 chr1A 21335125 21340306 5181 False 988.500000 2296 89.983500 1 4821 6 chr1A.!!$F1 4820
6 TraesCS1D01G040900 chr6D 50774701 50779800 5099 True 457.016667 1369 89.190833 1028 3898 6 chr6D.!!$R1 2870
7 TraesCS1D01G040900 chr6B 120644511 120649562 5051 False 361.512500 1310 89.627500 934 3898 8 chr6B.!!$F1 2964
8 TraesCS1D01G040900 chr6A 64255505 64262002 6497 False 547.600000 1306 87.096800 1109 4612 5 chr6A.!!$F1 3503
9 TraesCS1D01G040900 chr7D 66822658 66829055 6397 True 475.166667 1275 86.909833 1028 4447 6 chr7D.!!$R3 3419
10 TraesCS1D01G040900 chr7A 73806767 73809387 2620 False 504.500000 758 86.741750 1914 3714 4 chr7A.!!$F6 1800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 499 0.539986 GGCAAGGACTCGGTGGATTA 59.460 55.0 0.00 0.00 0.00 1.75 F
865 1001 0.757935 GTATAGTGAGTGCCCCGGGA 60.758 60.0 26.32 0.00 0.00 5.14 F
1632 2601 0.532573 TGGCCAAAACTTTTGTGCGA 59.467 45.0 0.61 9.73 0.00 5.10 F
1884 3439 0.877071 ATGGCACTCAACTTCTTGCG 59.123 50.0 0.00 0.00 35.74 4.85 F
3624 11225 0.676466 TCATGGCCCTTGCGTACTTG 60.676 55.0 0.00 0.00 38.85 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1226 1621 1.493311 CACAAGAACCGAAGAGCGC 59.507 57.895 0.0 0.0 39.11 5.92 R
2598 7888 0.961019 TACCAACTACAGCGACCGTT 59.039 50.000 0.0 0.0 0.00 4.44 R
3624 11225 1.062587 GCAATGTAGTCATCACGGCAC 59.937 52.381 0.0 0.0 32.56 5.01 R
3640 11241 4.322057 AATTGAGTTACCCTCCAGCAAT 57.678 40.909 0.0 0.0 39.65 3.56 R
5234 15497 0.037877 CCATGGAGAGGGATGCATCC 59.962 60.000 33.9 33.9 46.41 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.704668 TGTCACATCTTGTTACATATCCTGTAT 58.295 33.333 0.00 0.00 40.02 2.29
69 70 5.962031 TGGGTGATAACTACTAGTGGAACAT 59.038 40.000 13.86 2.76 44.52 2.71
74 75 8.033038 GTGATAACTACTAGTGGAACATTGTGA 58.967 37.037 13.86 0.00 44.52 3.58
81 82 3.620488 AGTGGAACATTGTGAGTGTGTT 58.380 40.909 0.00 0.00 44.52 3.32
93 94 2.482336 TGAGTGTGTTTGTGTGTGTGTC 59.518 45.455 0.00 0.00 0.00 3.67
94 95 2.482336 GAGTGTGTTTGTGTGTGTGTCA 59.518 45.455 0.00 0.00 0.00 3.58
100 114 4.003648 TGTTTGTGTGTGTGTCATGTGTA 58.996 39.130 0.00 0.00 0.00 2.90
204 219 6.750501 TCGAAAATGTAAGTAGAACGAGATGG 59.249 38.462 0.00 0.00 0.00 3.51
209 224 5.198207 TGTAAGTAGAACGAGATGGGATGA 58.802 41.667 0.00 0.00 0.00 2.92
215 230 3.829601 AGAACGAGATGGGATGAGGTATC 59.170 47.826 0.00 0.00 34.93 2.24
222 237 1.270907 GGGATGAGGTATCGGCTGAT 58.729 55.000 13.70 13.70 36.62 2.90
388 498 1.201429 AGGCAAGGACTCGGTGGATT 61.201 55.000 0.00 0.00 0.00 3.01
389 499 0.539986 GGCAAGGACTCGGTGGATTA 59.460 55.000 0.00 0.00 0.00 1.75
469 586 3.773119 TCCTGTCTGTTATAGGGTTGACC 59.227 47.826 0.00 0.00 37.10 4.02
609 727 9.415008 TGAGCTATATTTTACTCTCTCTGTTCT 57.585 33.333 0.00 0.00 0.00 3.01
653 777 7.880713 AGAGACTCCAATCTTTTTAAGGACTTC 59.119 37.037 0.00 0.00 0.00 3.01
654 778 7.518188 AGACTCCAATCTTTTTAAGGACTTCA 58.482 34.615 0.00 0.00 0.00 3.02
657 781 9.807921 ACTCCAATCTTTTTAAGGACTTCAATA 57.192 29.630 0.00 0.00 0.00 1.90
787 916 6.889177 TGCATACCTAATCAAACCAAAGATGA 59.111 34.615 0.00 0.00 0.00 2.92
861 997 1.134189 GGGTTGTATAGTGAGTGCCCC 60.134 57.143 0.00 0.00 0.00 5.80
865 1001 0.757935 GTATAGTGAGTGCCCCGGGA 60.758 60.000 26.32 0.00 0.00 5.14
911 1053 9.852091 GTGCTCTCTAAATTTTTCATTCATTCT 57.148 29.630 0.00 0.00 0.00 2.40
985 1130 3.744719 CCTCCTCGTCGTTCGCCA 61.745 66.667 0.00 0.00 39.67 5.69
1043 1203 3.842923 CTCCGCCTCCGATGTGCT 61.843 66.667 0.00 0.00 36.29 4.40
1044 1204 4.147449 TCCGCCTCCGATGTGCTG 62.147 66.667 0.00 0.00 36.29 4.41
1065 1225 2.047274 CACTACGGGTGGTGCTGG 60.047 66.667 2.32 0.00 41.90 4.85
1066 1226 3.319198 ACTACGGGTGGTGCTGGG 61.319 66.667 0.00 0.00 0.00 4.45
1068 1228 3.000819 TACGGGTGGTGCTGGGAG 61.001 66.667 0.00 0.00 0.00 4.30
1083 1243 2.821810 GAGCTCTCCAAAGCCCGC 60.822 66.667 6.43 0.00 43.56 6.13
1088 1248 2.437359 CTCCAAAGCCCGCCTCAG 60.437 66.667 0.00 0.00 0.00 3.35
1089 1249 3.984193 CTCCAAAGCCCGCCTCAGG 62.984 68.421 0.00 0.00 0.00 3.86
1090 1250 4.351054 CCAAAGCCCGCCTCAGGT 62.351 66.667 0.00 0.00 0.00 4.00
1091 1251 3.058160 CAAAGCCCGCCTCAGGTG 61.058 66.667 0.00 0.00 0.00 4.00
1107 1267 3.398310 TGCACTGCCGCCTCCATA 61.398 61.111 0.00 0.00 0.00 2.74
1214 1606 8.928733 CCCTTCACATTTGATGTTTTTCATAAG 58.071 33.333 0.00 0.00 42.70 1.73
1235 1630 2.282820 GGAAGTAAAGATGCGCTCTTCG 59.717 50.000 18.24 0.00 43.60 3.79
1306 2104 7.283127 GTGATTTGGGAATTATAACAGCTGAGA 59.717 37.037 23.35 7.84 0.00 3.27
1388 2217 3.091633 ACCTTGGGCTTCGTAGTACTA 57.908 47.619 0.00 0.00 0.00 1.82
1436 2265 4.746729 TGTTCAGCAAAACATATGATGCC 58.253 39.130 20.94 11.57 39.59 4.40
1491 2320 9.241317 CTGTTTATGATGTAGAAATGGAATTGC 57.759 33.333 0.00 0.00 36.10 3.56
1492 2321 7.914871 TGTTTATGATGTAGAAATGGAATTGCG 59.085 33.333 0.00 0.00 36.78 4.85
1551 2518 4.636249 TCTCCTCTTCTTCTTGTTCTTGC 58.364 43.478 0.00 0.00 0.00 4.01
1568 2535 2.574006 TGCTTCTTGCTTCACCATCT 57.426 45.000 0.00 0.00 43.37 2.90
1576 2543 4.216257 TCTTGCTTCACCATCTAGTTTTGC 59.784 41.667 0.00 0.00 0.00 3.68
1594 2563 1.202989 TGCTGTGCTTTTGGACCCATA 60.203 47.619 0.00 0.00 40.25 2.74
1606 2575 4.437682 TGGACCCATATCCTGAAATGTC 57.562 45.455 0.00 0.00 39.75 3.06
1632 2601 0.532573 TGGCCAAAACTTTTGTGCGA 59.467 45.000 0.61 9.73 0.00 5.10
1884 3439 0.877071 ATGGCACTCAACTTCTTGCG 59.123 50.000 0.00 0.00 35.74 4.85
1904 3459 3.849911 CGATCTGTCCGCATATGGTAAT 58.150 45.455 4.56 0.00 0.00 1.89
1905 3460 4.993905 CGATCTGTCCGCATATGGTAATA 58.006 43.478 4.56 0.00 0.00 0.98
1906 3461 5.592054 CGATCTGTCCGCATATGGTAATAT 58.408 41.667 4.56 0.00 0.00 1.28
2238 6951 9.079833 CCAATATTCATTGTGTTCACATTCTTC 57.920 33.333 6.47 0.00 40.04 2.87
2271 6986 2.195922 TCATCGTCACGCAATCTCATG 58.804 47.619 0.00 0.00 0.00 3.07
2285 7010 6.372185 GCAATCTCATGCTTCAATATCAGTC 58.628 40.000 0.00 0.00 43.06 3.51
2384 7210 5.297547 TCACGCTTAGAGACAATGAACTTT 58.702 37.500 0.00 0.00 0.00 2.66
2388 7214 5.389935 CGCTTAGAGACAATGAACTTTGGTC 60.390 44.000 0.00 0.00 0.00 4.02
2438 7264 9.808808 CGAGATAAAGAATGATGCTAAAATGAG 57.191 33.333 0.00 0.00 0.00 2.90
2598 7888 6.094742 TGCTCTACACTTTGTTTGAATTGTGA 59.905 34.615 0.00 0.00 0.00 3.58
3260 9537 9.331282 CATATATATCGTAGAGACATCTGGACA 57.669 37.037 0.00 0.00 43.63 4.02
3337 9622 5.154222 GCTAACATAAAGCACCAAACTGAC 58.846 41.667 0.00 0.00 39.83 3.51
3391 9677 6.463360 TCATACACTGACATGTTAAGCAAGA 58.537 36.000 0.00 0.00 33.85 3.02
3421 10992 1.859574 AGGGGGTTGCTTATAGGCATT 59.140 47.619 10.66 0.00 42.09 3.56
3430 11007 4.018490 TGCTTATAGGCATTATGGGCATG 58.982 43.478 5.26 0.00 37.29 4.06
3474 11061 9.177608 CACTCCTGTTTATTTATTGAATGGAGA 57.822 33.333 0.00 0.00 39.54 3.71
3624 11225 0.676466 TCATGGCCCTTGCGTACTTG 60.676 55.000 0.00 0.00 38.85 3.16
3640 11241 1.343142 ACTTGTGCCGTGATGACTACA 59.657 47.619 0.00 0.00 0.00 2.74
4039 11759 5.520376 AAACTTGGTCAAACTTGAGATGG 57.480 39.130 0.00 0.00 37.98 3.51
4142 11875 0.466372 GGCCTTACCATTGGAGCCTC 60.466 60.000 10.37 0.00 38.86 4.70
4280 14167 0.824109 TAGTGAGATCGCTGGGGTTG 59.176 55.000 6.17 0.00 37.28 3.77
4335 14223 3.904339 AGAGCTAGACAGAAAGGGAACAA 59.096 43.478 0.00 0.00 0.00 2.83
4346 14246 2.622064 AGGGAACAATATCGTGCTCC 57.378 50.000 0.00 0.00 33.69 4.70
4357 14257 2.900273 GTGCTCCATCACGCCCTA 59.100 61.111 0.00 0.00 0.00 3.53
4424 14324 4.777896 ACCTGTGTACATATCTCCACAAGT 59.222 41.667 0.00 0.00 37.37 3.16
4459 14378 6.525629 TGAAAGCCTTACTTATCCTAGCATC 58.474 40.000 0.00 0.00 37.75 3.91
4466 14385 2.900546 ACTTATCCTAGCATCCCTTCCG 59.099 50.000 0.00 0.00 0.00 4.30
4484 14404 4.742438 TCCGTTTTTGTCTGTTATCAGC 57.258 40.909 0.00 0.00 41.10 4.26
4487 14407 4.911610 CCGTTTTTGTCTGTTATCAGCAAG 59.088 41.667 9.22 0.00 41.10 4.01
4497 14417 7.066887 TGTCTGTTATCAGCAAGTTCTTTTTCA 59.933 33.333 0.00 0.00 41.10 2.69
4499 14419 6.198687 TGTTATCAGCAAGTTCTTTTTCACG 58.801 36.000 0.00 0.00 0.00 4.35
4504 14425 2.535574 GCAAGTTCTTTTTCACGCTTGG 59.464 45.455 0.00 0.00 35.31 3.61
4510 14431 2.622942 TCTTTTTCACGCTTGGCAAGAT 59.377 40.909 30.45 14.62 0.00 2.40
4511 14432 3.068024 TCTTTTTCACGCTTGGCAAGATT 59.932 39.130 30.45 13.04 0.00 2.40
4545 14466 7.069950 GGATAAGGGCAAATCCTCTTTGTATTT 59.930 37.037 5.11 0.00 38.92 1.40
4614 14538 4.916983 ACATAAAGTTGAGCTGTTGCAA 57.083 36.364 0.00 0.00 42.74 4.08
4663 14587 4.215827 TGGGAATTTTGTTGAATGCAATGC 59.784 37.500 0.00 0.00 36.22 3.56
4689 14613 6.644347 CACATGGATAATCTAGGTATGGGAC 58.356 44.000 0.00 0.00 0.00 4.46
4756 14681 3.631227 GGTAGCATCGTACTTCTGTAGGT 59.369 47.826 0.00 0.00 36.33 3.08
4810 14744 8.902540 ACAATGTAATCTTGTAAGTCTTGTCA 57.097 30.769 0.00 0.00 35.15 3.58
4818 14752 7.953158 TCTTGTAAGTCTTGTCAAGATTCTG 57.047 36.000 18.08 6.16 40.46 3.02
4843 14777 2.916934 TGGCTTTGTCTTATGTAGGGGT 59.083 45.455 0.00 0.00 0.00 4.95
4858 14792 3.053831 AGGGGTGACGTGATTTTGTAG 57.946 47.619 0.00 0.00 0.00 2.74
4861 14795 3.556423 GGGGTGACGTGATTTTGTAGACT 60.556 47.826 0.00 0.00 0.00 3.24
4863 14797 4.056050 GGTGACGTGATTTTGTAGACTGT 58.944 43.478 0.00 0.00 0.00 3.55
4864 14798 4.510340 GGTGACGTGATTTTGTAGACTGTT 59.490 41.667 0.00 0.00 0.00 3.16
4865 14799 5.007332 GGTGACGTGATTTTGTAGACTGTTT 59.993 40.000 0.00 0.00 0.00 2.83
4866 14800 5.901884 GTGACGTGATTTTGTAGACTGTTTG 59.098 40.000 0.00 0.00 0.00 2.93
4868 14802 6.044512 ACGTGATTTTGTAGACTGTTTGAC 57.955 37.500 0.00 0.00 0.00 3.18
4869 14803 5.583061 ACGTGATTTTGTAGACTGTTTGACA 59.417 36.000 0.00 0.00 0.00 3.58
4870 14804 6.092944 ACGTGATTTTGTAGACTGTTTGACAA 59.907 34.615 0.00 0.00 0.00 3.18
4871 14805 6.964370 CGTGATTTTGTAGACTGTTTGACAAA 59.036 34.615 0.00 0.00 39.39 2.83
4895 14829 2.566010 CCACAATTGGGGTTCGCG 59.434 61.111 19.31 0.00 39.57 5.87
4897 14831 1.209127 CACAATTGGGGTTCGCGTC 59.791 57.895 10.83 0.09 0.00 5.19
4898 14832 1.969589 ACAATTGGGGTTCGCGTCC 60.970 57.895 10.83 10.33 0.00 4.79
4899 14833 2.360726 AATTGGGGTTCGCGTCCC 60.361 61.111 25.59 25.59 43.90 4.46
4905 14839 4.668118 GGTTCGCGTCCCACGGAA 62.668 66.667 5.77 0.00 42.82 4.30
4907 14841 3.608662 TTCGCGTCCCACGGAACT 61.609 61.111 5.77 0.00 42.82 3.01
4908 14842 2.267351 TTCGCGTCCCACGGAACTA 61.267 57.895 5.77 0.00 42.82 2.24
4910 14844 2.125793 GCGTCCCACGGAACTACC 60.126 66.667 0.00 0.00 42.82 3.18
4911 14845 2.934570 GCGTCCCACGGAACTACCA 61.935 63.158 0.00 0.00 42.82 3.25
4912 14846 1.080298 CGTCCCACGGAACTACCAC 60.080 63.158 0.00 0.00 38.08 4.16
4913 14847 1.530013 CGTCCCACGGAACTACCACT 61.530 60.000 0.00 0.00 38.08 4.00
4914 14848 0.683412 GTCCCACGGAACTACCACTT 59.317 55.000 0.00 0.00 38.90 3.16
4915 14849 1.071228 GTCCCACGGAACTACCACTTT 59.929 52.381 0.00 0.00 38.90 2.66
4917 14851 1.071071 CCCACGGAACTACCACTTTCA 59.929 52.381 0.00 0.00 38.90 2.69
4918 14852 2.413837 CCACGGAACTACCACTTTCAG 58.586 52.381 0.00 0.00 38.90 3.02
4919 14853 2.036733 CCACGGAACTACCACTTTCAGA 59.963 50.000 0.00 0.00 38.90 3.27
4922 14856 4.211374 CACGGAACTACCACTTTCAGAAAG 59.789 45.833 19.71 19.71 44.10 2.62
4923 14857 3.746492 CGGAACTACCACTTTCAGAAAGG 59.254 47.826 24.02 12.65 42.82 3.11
4924 14858 4.715713 GGAACTACCACTTTCAGAAAGGT 58.284 43.478 24.02 17.18 42.82 3.50
4925 14859 5.510179 CGGAACTACCACTTTCAGAAAGGTA 60.510 44.000 24.02 17.36 42.82 3.08
4926 14860 6.293698 GGAACTACCACTTTCAGAAAGGTAA 58.706 40.000 24.02 8.17 42.82 2.85
4928 14862 7.255035 GGAACTACCACTTTCAGAAAGGTAAAC 60.255 40.741 24.02 12.59 42.82 2.01
4930 14864 3.314357 ACCACTTTCAGAAAGGTAAACGC 59.686 43.478 24.02 0.00 42.82 4.84
4931 14865 3.564225 CCACTTTCAGAAAGGTAAACGCT 59.436 43.478 24.02 0.78 42.82 5.07
4934 14868 3.619233 TTCAGAAAGGTAAACGCTTGC 57.381 42.857 0.00 0.00 0.00 4.01
4936 14870 1.606668 CAGAAAGGTAAACGCTTGCCA 59.393 47.619 8.43 0.00 39.66 4.92
4937 14871 1.607148 AGAAAGGTAAACGCTTGCCAC 59.393 47.619 8.43 0.00 39.66 5.01
4938 14872 0.671796 AAAGGTAAACGCTTGCCACC 59.328 50.000 8.43 0.00 39.66 4.61
4939 14873 0.466555 AAGGTAAACGCTTGCCACCA 60.467 50.000 8.43 0.00 39.66 4.17
4941 14875 1.081442 GTAAACGCTTGCCACCAGC 60.081 57.895 0.00 0.00 44.14 4.85
4956 14890 3.626924 AGCAGACCGGCCGAAGTT 61.627 61.111 30.73 7.60 0.00 2.66
4957 14891 2.668550 GCAGACCGGCCGAAGTTT 60.669 61.111 30.73 9.54 0.00 2.66
4958 14892 2.677979 GCAGACCGGCCGAAGTTTC 61.678 63.158 30.73 14.27 0.00 2.78
4967 14901 3.475774 CGAAGTTTCGGCCGGTCG 61.476 66.667 25.52 25.52 46.30 4.79
4981 14915 4.253273 GTCGAGCGCGCATCGTTC 62.253 66.667 34.49 27.53 43.64 3.95
4984 14918 3.323136 GAGCGCGCATCGTTCGAT 61.323 61.111 35.10 8.99 38.57 3.59
4985 14919 3.256615 GAGCGCGCATCGTTCGATC 62.257 63.158 35.10 14.89 38.57 3.69
4986 14920 3.323136 GCGCGCATCGTTCGATCT 61.323 61.111 29.10 0.00 41.07 2.75
4988 14922 1.655654 CGCGCATCGTTCGATCTCT 60.656 57.895 8.75 0.00 0.00 3.10
4989 14923 1.202973 CGCGCATCGTTCGATCTCTT 61.203 55.000 8.75 0.00 0.00 2.85
4991 14925 1.331507 GCGCATCGTTCGATCTCTTTG 60.332 52.381 0.30 0.00 0.00 2.77
4992 14926 1.256376 CGCATCGTTCGATCTCTTTGG 59.744 52.381 4.67 0.00 0.00 3.28
4994 14928 1.256376 CATCGTTCGATCTCTTTGGCG 59.744 52.381 4.67 0.00 0.00 5.69
4995 14929 0.524414 TCGTTCGATCTCTTTGGCGA 59.476 50.000 0.00 0.00 0.00 5.54
4997 14931 1.256376 CGTTCGATCTCTTTGGCGATG 59.744 52.381 0.00 0.00 32.38 3.84
4998 14932 1.594862 GTTCGATCTCTTTGGCGATGG 59.405 52.381 0.00 0.00 32.38 3.51
5000 14934 1.480545 TCGATCTCTTTGGCGATGGAA 59.519 47.619 0.00 0.00 0.00 3.53
5001 14935 1.863454 CGATCTCTTTGGCGATGGAAG 59.137 52.381 0.00 0.00 0.00 3.46
5002 14936 1.601430 GATCTCTTTGGCGATGGAAGC 59.399 52.381 0.00 0.00 0.00 3.86
5004 14938 1.012841 CTCTTTGGCGATGGAAGCTC 58.987 55.000 0.00 0.00 34.52 4.09
5005 14939 0.392998 TCTTTGGCGATGGAAGCTCC 60.393 55.000 0.00 0.00 36.96 4.70
5006 14940 0.393537 CTTTGGCGATGGAAGCTCCT 60.394 55.000 0.00 0.00 37.46 3.69
5007 14941 0.677731 TTTGGCGATGGAAGCTCCTG 60.678 55.000 0.00 0.00 37.46 3.86
5011 14945 0.678048 GCGATGGAAGCTCCTGGTTT 60.678 55.000 0.00 0.00 37.46 3.27
5012 14946 1.406887 GCGATGGAAGCTCCTGGTTTA 60.407 52.381 0.00 0.00 37.46 2.01
5013 14947 2.555199 CGATGGAAGCTCCTGGTTTAG 58.445 52.381 0.00 0.00 37.46 1.85
5014 14948 2.293170 GATGGAAGCTCCTGGTTTAGC 58.707 52.381 0.00 0.00 37.46 3.09
5020 14954 1.020437 GCTCCTGGTTTAGCTGCATC 58.980 55.000 1.02 0.00 35.80 3.91
5021 14955 1.679944 GCTCCTGGTTTAGCTGCATCA 60.680 52.381 1.02 0.00 35.80 3.07
5022 14956 2.928334 CTCCTGGTTTAGCTGCATCAT 58.072 47.619 1.02 0.00 0.00 2.45
5024 14958 2.239402 TCCTGGTTTAGCTGCATCATCA 59.761 45.455 1.02 0.00 0.00 3.07
5025 14959 2.357009 CCTGGTTTAGCTGCATCATCAC 59.643 50.000 1.02 0.00 0.00 3.06
5026 14960 3.011818 CTGGTTTAGCTGCATCATCACA 58.988 45.455 1.02 0.00 0.00 3.58
5027 14961 2.749076 TGGTTTAGCTGCATCATCACAC 59.251 45.455 1.02 0.00 0.00 3.82
5029 14963 3.426695 GGTTTAGCTGCATCATCACACAC 60.427 47.826 1.02 0.00 0.00 3.82
5031 14965 1.900245 AGCTGCATCATCACACACAA 58.100 45.000 1.02 0.00 0.00 3.33
5032 14966 1.810755 AGCTGCATCATCACACACAAG 59.189 47.619 1.02 0.00 0.00 3.16
5034 14968 2.156917 CTGCATCATCACACACAAGGT 58.843 47.619 0.00 0.00 0.00 3.50
5036 14970 3.073678 TGCATCATCACACACAAGGTAC 58.926 45.455 0.00 0.00 0.00 3.34
5038 14972 4.020662 TGCATCATCACACACAAGGTACTA 60.021 41.667 0.00 0.00 38.49 1.82
5039 14973 4.935205 GCATCATCACACACAAGGTACTAA 59.065 41.667 0.00 0.00 38.49 2.24
5040 14974 5.586243 GCATCATCACACACAAGGTACTAAT 59.414 40.000 0.00 0.00 38.49 1.73
5041 14975 6.094048 GCATCATCACACACAAGGTACTAATT 59.906 38.462 0.00 0.00 38.49 1.40
5043 14977 8.604035 CATCATCACACACAAGGTACTAATTAC 58.396 37.037 0.00 0.00 38.49 1.89
5044 14978 7.903145 TCATCACACACAAGGTACTAATTACT 58.097 34.615 0.00 0.00 38.49 2.24
5045 14979 9.027202 TCATCACACACAAGGTACTAATTACTA 57.973 33.333 0.00 0.00 38.49 1.82
5046 14980 9.647797 CATCACACACAAGGTACTAATTACTAA 57.352 33.333 0.00 0.00 38.49 2.24
5048 14982 9.480053 TCACACACAAGGTACTAATTACTAAAC 57.520 33.333 0.00 0.00 38.49 2.01
5050 14984 7.116805 ACACACAAGGTACTAATTACTAAACGC 59.883 37.037 0.00 0.00 38.49 4.84
5051 14985 6.308766 ACACAAGGTACTAATTACTAAACGCG 59.691 38.462 3.53 3.53 38.49 6.01
5052 14986 6.308766 CACAAGGTACTAATTACTAAACGCGT 59.691 38.462 5.58 5.58 38.49 6.01
5054 14988 5.343249 AGGTACTAATTACTAAACGCGTGG 58.657 41.667 14.98 9.19 36.02 4.94
5055 14989 4.026558 GGTACTAATTACTAAACGCGTGGC 60.027 45.833 14.98 0.00 0.00 5.01
5056 14990 3.853475 ACTAATTACTAAACGCGTGGCT 58.147 40.909 14.98 2.74 0.00 4.75
5057 14991 3.615496 ACTAATTACTAAACGCGTGGCTG 59.385 43.478 14.98 6.37 0.00 4.85
5060 14994 1.141645 TACTAAACGCGTGGCTGTTG 58.858 50.000 14.98 1.63 0.00 3.33
5061 14995 1.206578 CTAAACGCGTGGCTGTTGG 59.793 57.895 14.98 0.00 0.00 3.77
5062 14996 2.182614 CTAAACGCGTGGCTGTTGGG 62.183 60.000 14.98 0.00 0.00 4.12
5094 15357 2.651361 CAGTGGGTCGCGTCTTCT 59.349 61.111 5.77 0.00 0.00 2.85
5100 15363 0.320508 GGGTCGCGTCTTCTTTTCCT 60.321 55.000 5.77 0.00 0.00 3.36
5104 15367 3.683340 GGTCGCGTCTTCTTTTCCTTATT 59.317 43.478 5.77 0.00 0.00 1.40
5106 15369 4.387862 GTCGCGTCTTCTTTTCCTTATTCA 59.612 41.667 5.77 0.00 0.00 2.57
5108 15371 5.642063 TCGCGTCTTCTTTTCCTTATTCATT 59.358 36.000 5.77 0.00 0.00 2.57
5110 15373 5.960105 GCGTCTTCTTTTCCTTATTCATTCG 59.040 40.000 0.00 0.00 0.00 3.34
5114 15377 7.641802 GTCTTCTTTTCCTTATTCATTCGATGC 59.358 37.037 0.00 0.00 0.00 3.91
5116 15379 7.251704 TCTTTTCCTTATTCATTCGATGCTC 57.748 36.000 0.00 0.00 0.00 4.26
5118 15381 7.500227 TCTTTTCCTTATTCATTCGATGCTCAT 59.500 33.333 0.00 0.00 0.00 2.90
5119 15382 6.791887 TTCCTTATTCATTCGATGCTCATC 57.208 37.500 0.00 0.00 34.56 2.92
5120 15383 5.240891 TCCTTATTCATTCGATGCTCATCC 58.759 41.667 4.45 0.00 34.40 3.51
5121 15384 4.394300 CCTTATTCATTCGATGCTCATCCC 59.606 45.833 4.45 0.00 34.40 3.85
5123 15386 1.130777 TCATTCGATGCTCATCCCCA 58.869 50.000 4.45 0.00 34.40 4.96
5125 15388 2.107031 TCATTCGATGCTCATCCCCATT 59.893 45.455 4.45 0.00 34.40 3.16
5126 15389 2.260844 TTCGATGCTCATCCCCATTC 57.739 50.000 4.45 0.00 34.40 2.67
5127 15390 0.397941 TCGATGCTCATCCCCATTCC 59.602 55.000 4.45 0.00 34.40 3.01
5128 15391 0.399454 CGATGCTCATCCCCATTCCT 59.601 55.000 4.45 0.00 34.40 3.36
5129 15392 1.625315 CGATGCTCATCCCCATTCCTA 59.375 52.381 4.45 0.00 34.40 2.94
5130 15393 2.238144 CGATGCTCATCCCCATTCCTAT 59.762 50.000 4.45 0.00 34.40 2.57
5131 15394 3.681034 CGATGCTCATCCCCATTCCTATC 60.681 52.174 4.45 0.00 34.40 2.08
5132 15395 1.988107 TGCTCATCCCCATTCCTATCC 59.012 52.381 0.00 0.00 0.00 2.59
5133 15396 1.988107 GCTCATCCCCATTCCTATCCA 59.012 52.381 0.00 0.00 0.00 3.41
5134 15397 2.026449 GCTCATCCCCATTCCTATCCAG 60.026 54.545 0.00 0.00 0.00 3.86
5135 15398 1.988107 TCATCCCCATTCCTATCCAGC 59.012 52.381 0.00 0.00 0.00 4.85
5137 15400 1.127567 TCCCCATTCCTATCCAGCCG 61.128 60.000 0.00 0.00 0.00 5.52
5138 15401 1.376466 CCCATTCCTATCCAGCCGG 59.624 63.158 0.00 0.00 0.00 6.13
5141 15404 2.883828 ATTCCTATCCAGCCGGCCG 61.884 63.158 26.15 21.04 0.00 6.13
5155 15418 3.818787 GCCGCGTCTTCCTCCGTA 61.819 66.667 4.92 0.00 0.00 4.02
5156 15419 2.408022 CCGCGTCTTCCTCCGTAG 59.592 66.667 4.92 0.00 0.00 3.51
5160 15423 1.139095 CGTCTTCCTCCGTAGCCAC 59.861 63.158 0.00 0.00 0.00 5.01
5209 15472 1.512734 GCTTGATGCGCCTTGTTCG 60.513 57.895 4.18 0.00 0.00 3.95
5212 15475 1.131126 CTTGATGCGCCTTGTTCGAAT 59.869 47.619 4.18 0.00 0.00 3.34
5213 15476 0.726827 TGATGCGCCTTGTTCGAATC 59.273 50.000 4.18 0.00 41.24 2.52
5215 15478 1.019278 ATGCGCCTTGTTCGAATCGT 61.019 50.000 4.18 0.00 0.00 3.73
5216 15479 1.225745 GCGCCTTGTTCGAATCGTG 60.226 57.895 0.00 0.00 0.00 4.35
5217 15480 1.897398 GCGCCTTGTTCGAATCGTGT 61.897 55.000 0.00 0.00 0.00 4.49
5218 15481 0.179250 CGCCTTGTTCGAATCGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
5219 15482 0.865769 GCCTTGTTCGAATCGTGTGT 59.134 50.000 0.00 0.00 0.00 3.72
5220 15483 1.398451 GCCTTGTTCGAATCGTGTGTG 60.398 52.381 0.00 0.00 0.00 3.82
5221 15484 1.194547 CCTTGTTCGAATCGTGTGTGG 59.805 52.381 0.00 0.00 0.00 4.17
5222 15485 2.131972 CTTGTTCGAATCGTGTGTGGA 58.868 47.619 0.00 0.00 0.00 4.02
5223 15486 2.448926 TGTTCGAATCGTGTGTGGAT 57.551 45.000 0.00 0.00 0.00 3.41
5224 15487 2.333926 TGTTCGAATCGTGTGTGGATC 58.666 47.619 0.00 0.00 0.00 3.36
5225 15488 1.320555 GTTCGAATCGTGTGTGGATCG 59.679 52.381 0.00 0.00 0.00 3.69
5227 15490 1.752501 CGAATCGTGTGTGGATCGCC 61.753 60.000 0.00 0.00 0.00 5.54
5229 15492 2.220615 AATCGTGTGTGGATCGCCGA 62.221 55.000 0.00 0.00 36.79 5.54
5230 15493 2.884087 ATCGTGTGTGGATCGCCGAC 62.884 60.000 0.00 0.00 36.79 4.79
5245 15508 4.241555 GACGCCGGATGCATCCCT 62.242 66.667 34.76 17.83 44.24 4.20
5247 15510 3.933722 CGCCGGATGCATCCCTCT 61.934 66.667 34.76 0.00 44.24 3.69
5248 15511 2.031768 GCCGGATGCATCCCTCTC 59.968 66.667 34.76 19.45 44.24 3.20
5250 15513 2.142761 CCGGATGCATCCCTCTCCA 61.143 63.158 34.76 0.00 44.24 3.86
5253 15516 0.037877 GGATGCATCCCTCTCCATGG 59.962 60.000 32.15 4.97 41.20 3.66
5254 15517 0.608582 GATGCATCCCTCTCCATGGC 60.609 60.000 16.23 0.00 0.00 4.40
5255 15518 2.077842 ATGCATCCCTCTCCATGGCC 62.078 60.000 6.96 0.00 0.00 5.36
5256 15519 2.429058 CATCCCTCTCCATGGCCG 59.571 66.667 6.96 0.01 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.435570 AGTAGTTATCACCCAATAGTGTTCTAT 57.564 33.333 0.00 0.00 38.91 1.98
69 70 2.881513 ACACACACAAACACACTCACAA 59.118 40.909 0.00 0.00 0.00 3.33
74 75 2.499197 TGACACACACACAAACACACT 58.501 42.857 0.00 0.00 0.00 3.55
81 82 3.563390 CCATACACATGACACACACACAA 59.437 43.478 0.00 0.00 33.67 3.33
93 94 5.294306 AGCGTCTGAATTAACCATACACATG 59.706 40.000 0.00 0.00 0.00 3.21
94 95 5.294306 CAGCGTCTGAATTAACCATACACAT 59.706 40.000 1.18 0.00 32.44 3.21
100 114 3.350219 ACCAGCGTCTGAATTAACCAT 57.650 42.857 8.20 0.00 32.44 3.55
204 219 3.957497 AGATATCAGCCGATACCTCATCC 59.043 47.826 5.32 0.00 36.94 3.51
209 224 7.482169 TGAATTTAGATATCAGCCGATACCT 57.518 36.000 5.32 0.00 36.94 3.08
215 230 6.551385 AGCTTTGAATTTAGATATCAGCCG 57.449 37.500 5.32 0.00 0.00 5.52
355 414 1.407656 TTGCCTGGAGTCGTTCACCT 61.408 55.000 0.00 0.00 0.00 4.00
388 498 1.456892 ACCGGACGGCAGATGGATA 60.457 57.895 9.46 0.00 39.32 2.59
389 499 2.764128 ACCGGACGGCAGATGGAT 60.764 61.111 9.46 0.00 39.32 3.41
394 508 4.758251 CATGCACCGGACGGCAGA 62.758 66.667 20.82 3.86 44.24 4.26
401 515 1.228094 TTGACTTGCATGCACCGGA 60.228 52.632 22.58 4.47 0.00 5.14
787 916 2.647802 ACAACCCTAGGGCACTAATTGT 59.352 45.455 28.88 24.23 39.32 2.71
861 997 4.695455 CAGGGCACTAATTATACAATCCCG 59.305 45.833 0.00 0.00 36.40 5.14
865 1001 4.827284 GCACCAGGGCACTAATTATACAAT 59.173 41.667 0.00 0.00 0.00 2.71
1027 1187 4.147449 CAGCACATCGGAGGCGGA 62.147 66.667 0.00 0.00 0.00 5.54
1049 1209 3.319198 CCCAGCACCACCCGTAGT 61.319 66.667 0.00 0.00 0.00 2.73
1055 1215 3.322318 GAGAGCTCCCAGCACCACC 62.322 68.421 10.93 0.00 45.56 4.61
1056 1216 2.267324 GAGAGCTCCCAGCACCAC 59.733 66.667 10.93 0.00 45.56 4.16
1066 1226 2.821810 GCGGGCTTTGGAGAGCTC 60.822 66.667 5.27 5.27 42.32 4.09
1068 1228 4.416738 AGGCGGGCTTTGGAGAGC 62.417 66.667 0.00 0.00 41.96 4.09
1070 1230 2.927856 TGAGGCGGGCTTTGGAGA 60.928 61.111 5.24 0.00 0.00 3.71
1089 1249 2.947938 ATATGGAGGCGGCAGTGCAC 62.948 60.000 18.61 9.40 36.28 4.57
1090 1250 2.665008 GATATGGAGGCGGCAGTGCA 62.665 60.000 18.61 2.74 36.28 4.57
1091 1251 1.963338 GATATGGAGGCGGCAGTGC 60.963 63.158 13.08 6.55 0.00 4.40
1093 1253 2.872388 CGGATATGGAGGCGGCAGT 61.872 63.158 13.08 0.00 0.00 4.40
1096 1256 2.048127 GTCGGATATGGAGGCGGC 60.048 66.667 0.00 0.00 0.00 6.53
1098 1258 1.371758 CACGTCGGATATGGAGGCG 60.372 63.158 0.00 0.00 39.08 5.52
1101 1261 0.941463 GCAGCACGTCGGATATGGAG 60.941 60.000 0.00 0.00 0.00 3.86
1102 1262 1.067416 GCAGCACGTCGGATATGGA 59.933 57.895 0.00 0.00 0.00 3.41
1103 1263 2.302952 CGCAGCACGTCGGATATGG 61.303 63.158 0.00 0.00 36.87 2.74
1226 1621 1.493311 CACAAGAACCGAAGAGCGC 59.507 57.895 0.00 0.00 39.11 5.92
1235 1630 3.078837 TCGGAATTTAGCCACAAGAACC 58.921 45.455 0.00 0.00 0.00 3.62
1306 2104 6.536224 CGTTAAGGGGTATTAATGAGTTCGTT 59.464 38.462 0.00 0.00 34.81 3.85
1388 2217 4.348486 TCAGAGGTTTATCTCACAGAGCT 58.652 43.478 0.00 0.00 36.30 4.09
1422 2251 5.918426 TGTCACATGGCATCATATGTTTT 57.082 34.783 0.00 0.00 35.46 2.43
1436 2265 6.341880 CTACATCAGCTAGTTTGTCACATG 57.658 41.667 0.00 0.00 0.00 3.21
1491 2320 2.699954 ACCCTGTCTGCAATAAACTCG 58.300 47.619 0.00 0.00 0.00 4.18
1492 2321 3.125316 CGAACCCTGTCTGCAATAAACTC 59.875 47.826 0.00 0.00 0.00 3.01
1507 2336 2.218603 GTCATGTGTCAAACGAACCCT 58.781 47.619 0.00 0.00 0.00 4.34
1551 2518 6.376978 CAAAACTAGATGGTGAAGCAAGAAG 58.623 40.000 0.00 0.00 0.00 2.85
1568 2535 3.181480 GGTCCAAAAGCACAGCAAAACTA 60.181 43.478 0.00 0.00 0.00 2.24
1576 2543 2.689983 GGATATGGGTCCAAAAGCACAG 59.310 50.000 0.00 0.00 38.20 3.66
1632 2601 3.660177 TCTGCTATCTAGGATCTCCACCT 59.340 47.826 0.00 0.00 41.05 4.00
1904 3459 9.671279 CAGACCATGGCAAACTCATATATAATA 57.329 33.333 13.04 0.00 0.00 0.98
1905 3460 8.166061 ACAGACCATGGCAAACTCATATATAAT 58.834 33.333 13.04 0.00 0.00 1.28
1906 3461 7.445096 CACAGACCATGGCAAACTCATATATAA 59.555 37.037 13.04 0.00 0.00 0.98
2013 6714 6.910536 ACAAGTGCACTAGATAGCATAAAC 57.089 37.500 22.01 0.00 43.44 2.01
2165 6866 5.188948 GGAAAAGGCTACCCCAATAAACAAT 59.811 40.000 0.00 0.00 35.39 2.71
2172 6874 3.106827 CAATGGAAAAGGCTACCCCAAT 58.893 45.455 5.89 0.00 35.39 3.16
2199 6911 9.651913 ACAATGAATATTGGTTTGGTTAATCAC 57.348 29.630 0.00 0.00 46.33 3.06
2238 6951 4.466828 GTGACGATGAACACAAGGATTTG 58.533 43.478 0.00 0.00 40.24 2.32
2271 6986 7.608308 ACTTCTCAAAGACTGATATTGAAGC 57.392 36.000 0.00 0.00 36.65 3.86
2384 7210 2.304470 TGAAAAGGATGTCGATGGACCA 59.696 45.455 5.33 0.00 42.73 4.02
2388 7214 2.679837 CACCTGAAAAGGATGTCGATGG 59.320 50.000 0.00 0.00 0.00 3.51
2438 7264 2.750888 GGCCGTCGCATTGTCCTTC 61.751 63.158 0.00 0.00 36.38 3.46
2598 7888 0.961019 TACCAACTACAGCGACCGTT 59.039 50.000 0.00 0.00 0.00 4.44
2878 8182 2.159226 ACAATTAGGAAGGACTCGCTCG 60.159 50.000 0.00 0.00 0.00 5.03
3011 9083 5.030820 ACTAGGAAGGTAGCTATGGTTTGT 58.969 41.667 0.00 0.00 0.00 2.83
3260 9537 7.759489 TCAATTTGTCTGTTTAAGCTGGTAT 57.241 32.000 0.00 0.00 0.00 2.73
3337 9622 1.592669 CTCCAAGGCAGCGGTATCG 60.593 63.158 0.00 0.00 39.81 2.92
3624 11225 1.062587 GCAATGTAGTCATCACGGCAC 59.937 52.381 0.00 0.00 32.56 5.01
3640 11241 4.322057 AATTGAGTTACCCTCCAGCAAT 57.678 40.909 0.00 0.00 39.65 3.56
3909 11629 5.920193 ACATATCCCAAGTTTGACCAATG 57.080 39.130 0.00 0.00 0.00 2.82
4006 11726 9.581099 AAGTTTGACCAAGTTTATTTGTTACAG 57.419 29.630 0.00 0.00 0.00 2.74
4039 11759 7.448748 AACCATTTGTTAGTTCCATGAGTAC 57.551 36.000 0.00 0.00 34.69 2.73
4142 11875 6.703607 GTGAGTAGGATCCAGTACAAATGATG 59.296 42.308 15.82 0.00 0.00 3.07
4280 14167 0.931662 CGCAGCTCAGCAACACAAAC 60.932 55.000 0.00 0.00 0.00 2.93
4346 14246 1.066858 AGTCAACTGTAGGGCGTGATG 60.067 52.381 0.00 0.00 0.00 3.07
4357 14257 5.238583 GGCTACAGAAACATAGTCAACTGT 58.761 41.667 0.00 0.00 40.74 3.55
4459 14378 4.517453 TGATAACAGACAAAAACGGAAGGG 59.483 41.667 0.00 0.00 0.00 3.95
4466 14385 7.196331 AGAACTTGCTGATAACAGACAAAAAC 58.804 34.615 3.85 2.97 46.03 2.43
4484 14404 2.535574 GCCAAGCGTGAAAAAGAACTTG 59.464 45.455 0.00 0.00 35.43 3.16
4487 14407 2.202295 TGCCAAGCGTGAAAAAGAAC 57.798 45.000 0.00 0.00 0.00 3.01
4517 14438 2.408565 AGAGGATTTGCCCTTATCCGA 58.591 47.619 0.00 0.00 44.10 4.55
4519 14440 4.281657 ACAAAGAGGATTTGCCCTTATCC 58.718 43.478 0.43 0.00 40.54 2.59
4523 14444 6.686484 AAAATACAAAGAGGATTTGCCCTT 57.314 33.333 0.43 0.00 36.49 3.95
4614 14538 1.134521 TGAGTATTGCCGCGAAATCCT 60.135 47.619 8.23 3.22 0.00 3.24
4663 14587 5.111989 CCATACCTAGATTATCCATGTGCG 58.888 45.833 0.00 0.00 0.00 5.34
4689 14613 4.414182 TGGGTAAAACCTCCTATATGTGGG 59.586 45.833 0.00 0.00 38.64 4.61
4690 14614 5.640158 TGGGTAAAACCTCCTATATGTGG 57.360 43.478 0.00 0.00 38.64 4.17
4810 14744 3.073650 AGACAAAGCCAGGACAGAATCTT 59.926 43.478 0.00 0.00 0.00 2.40
4818 14752 4.192317 CCTACATAAGACAAAGCCAGGAC 58.808 47.826 0.00 0.00 0.00 3.85
4843 14777 5.813157 TCAAACAGTCTACAAAATCACGTCA 59.187 36.000 0.00 0.00 0.00 4.35
4870 14804 4.202172 CGAACCCCAATTGTGGTAGTTTTT 60.202 41.667 13.35 0.00 44.30 1.94
4871 14805 3.319689 CGAACCCCAATTGTGGTAGTTTT 59.680 43.478 13.35 0.00 44.30 2.43
4872 14806 2.888414 CGAACCCCAATTGTGGTAGTTT 59.112 45.455 13.35 0.00 44.30 2.66
4873 14807 2.510613 CGAACCCCAATTGTGGTAGTT 58.489 47.619 13.35 9.46 44.30 2.24
4874 14808 1.884928 GCGAACCCCAATTGTGGTAGT 60.885 52.381 13.35 0.00 44.30 2.73
4875 14809 0.808755 GCGAACCCCAATTGTGGTAG 59.191 55.000 13.35 11.33 44.30 3.18
4876 14810 0.956410 CGCGAACCCCAATTGTGGTA 60.956 55.000 13.35 0.00 44.30 3.25
4877 14811 2.265182 CGCGAACCCCAATTGTGGT 61.265 57.895 6.80 6.80 44.30 4.16
4878 14812 2.195123 GACGCGAACCCCAATTGTGG 62.195 60.000 15.93 5.29 45.53 4.17
4879 14813 1.209127 GACGCGAACCCCAATTGTG 59.791 57.895 15.93 0.00 0.00 3.33
4880 14814 1.969589 GGACGCGAACCCCAATTGT 60.970 57.895 15.93 0.00 0.00 2.71
4882 14816 2.360726 GGGACGCGAACCCCAATT 60.361 61.111 26.60 0.00 42.24 2.32
4893 14827 2.125793 GGTAGTTCCGTGGGACGC 60.126 66.667 0.00 0.00 40.91 5.19
4895 14829 0.683412 AAGTGGTAGTTCCGTGGGAC 59.317 55.000 0.00 0.00 39.52 4.46
4897 14831 1.071071 TGAAAGTGGTAGTTCCGTGGG 59.929 52.381 0.00 0.00 39.52 4.61
4898 14832 2.036733 TCTGAAAGTGGTAGTTCCGTGG 59.963 50.000 0.00 0.00 39.52 4.94
4899 14833 3.380479 TCTGAAAGTGGTAGTTCCGTG 57.620 47.619 0.00 0.00 39.52 4.94
4900 14834 4.377897 CTTTCTGAAAGTGGTAGTTCCGT 58.622 43.478 19.53 0.00 39.52 4.69
4901 14835 3.746492 CCTTTCTGAAAGTGGTAGTTCCG 59.254 47.826 24.18 5.61 36.77 4.30
4903 14837 7.517893 CGTTTACCTTTCTGAAAGTGGTAGTTC 60.518 40.741 24.18 14.56 36.99 3.01
4904 14838 6.259387 CGTTTACCTTTCTGAAAGTGGTAGTT 59.741 38.462 24.18 6.64 36.99 2.24
4905 14839 5.756833 CGTTTACCTTTCTGAAAGTGGTAGT 59.243 40.000 24.18 17.55 36.99 2.73
4907 14841 4.512571 GCGTTTACCTTTCTGAAAGTGGTA 59.487 41.667 24.18 18.89 36.77 3.25
4908 14842 3.314357 GCGTTTACCTTTCTGAAAGTGGT 59.686 43.478 24.18 19.75 36.77 4.16
4910 14844 4.813296 AGCGTTTACCTTTCTGAAAGTG 57.187 40.909 24.18 18.47 36.77 3.16
4911 14845 4.497507 GCAAGCGTTTACCTTTCTGAAAGT 60.498 41.667 24.18 16.16 36.77 2.66
4912 14846 3.975035 GCAAGCGTTTACCTTTCTGAAAG 59.025 43.478 20.58 20.58 38.24 2.62
4913 14847 3.243267 GGCAAGCGTTTACCTTTCTGAAA 60.243 43.478 2.44 2.44 0.00 2.69
4914 14848 2.292292 GGCAAGCGTTTACCTTTCTGAA 59.708 45.455 0.00 0.00 0.00 3.02
4915 14849 1.877443 GGCAAGCGTTTACCTTTCTGA 59.123 47.619 0.00 0.00 0.00 3.27
4917 14851 1.607148 GTGGCAAGCGTTTACCTTTCT 59.393 47.619 2.74 0.00 0.00 2.52
4918 14852 1.335597 GGTGGCAAGCGTTTACCTTTC 60.336 52.381 2.74 0.00 0.00 2.62
4919 14853 0.671796 GGTGGCAAGCGTTTACCTTT 59.328 50.000 2.74 0.00 0.00 3.11
4922 14856 1.579429 CTGGTGGCAAGCGTTTACC 59.421 57.895 0.00 0.00 0.00 2.85
4923 14857 1.081442 GCTGGTGGCAAGCGTTTAC 60.081 57.895 0.00 0.00 41.35 2.01
4924 14858 3.350377 GCTGGTGGCAAGCGTTTA 58.650 55.556 0.00 0.00 41.35 2.01
4938 14872 3.883744 AACTTCGGCCGGTCTGCTG 62.884 63.158 27.83 10.03 39.04 4.41
4939 14873 3.178540 AAACTTCGGCCGGTCTGCT 62.179 57.895 27.83 2.70 0.00 4.24
4941 14875 2.380410 CGAAACTTCGGCCGGTCTG 61.380 63.158 27.83 15.09 46.30 3.51
4942 14876 2.048503 CGAAACTTCGGCCGGTCT 60.049 61.111 27.83 1.73 46.30 3.85
4951 14885 2.048877 TCGACCGGCCGAAACTTC 60.049 61.111 30.73 13.29 35.42 3.01
4953 14887 4.736896 GCTCGACCGGCCGAAACT 62.737 66.667 30.73 5.35 38.17 2.66
4964 14898 4.253273 GAACGATGCGCGCTCGAC 62.253 66.667 39.28 30.67 46.04 4.20
4967 14901 3.256615 GATCGAACGATGCGCGCTC 62.257 63.158 33.29 23.99 46.04 5.03
4971 14905 0.924090 AAAGAGATCGAACGATGCGC 59.076 50.000 14.33 0.00 34.60 6.09
4972 14906 1.256376 CCAAAGAGATCGAACGATGCG 59.744 52.381 14.33 0.00 34.60 4.73
4976 14910 0.524414 TCGCCAAAGAGATCGAACGA 59.476 50.000 0.00 0.00 0.00 3.85
4977 14911 1.256376 CATCGCCAAAGAGATCGAACG 59.744 52.381 0.00 0.00 34.50 3.95
4978 14912 1.594862 CCATCGCCAAAGAGATCGAAC 59.405 52.381 0.00 0.00 34.50 3.95
4979 14913 1.480545 TCCATCGCCAAAGAGATCGAA 59.519 47.619 0.00 0.00 34.50 3.71
4981 14915 1.863454 CTTCCATCGCCAAAGAGATCG 59.137 52.381 0.00 0.00 28.93 3.69
4983 14917 1.211457 AGCTTCCATCGCCAAAGAGAT 59.789 47.619 0.00 0.00 32.01 2.75
4984 14918 0.615331 AGCTTCCATCGCCAAAGAGA 59.385 50.000 0.00 0.00 0.00 3.10
4985 14919 1.012841 GAGCTTCCATCGCCAAAGAG 58.987 55.000 0.00 0.00 0.00 2.85
4986 14920 0.392998 GGAGCTTCCATCGCCAAAGA 60.393 55.000 0.00 0.00 36.28 2.52
4988 14922 0.677731 CAGGAGCTTCCATCGCCAAA 60.678 55.000 5.21 0.00 39.61 3.28
4989 14923 1.078214 CAGGAGCTTCCATCGCCAA 60.078 57.895 5.21 0.00 39.61 4.52
4991 14925 2.203126 CCAGGAGCTTCCATCGCC 60.203 66.667 5.21 0.00 39.61 5.54
4992 14926 0.678048 AAACCAGGAGCTTCCATCGC 60.678 55.000 0.00 0.00 39.61 4.58
4994 14928 2.092699 AGCTAAACCAGGAGCTTCCATC 60.093 50.000 0.00 0.00 46.99 3.51
4995 14929 1.918957 AGCTAAACCAGGAGCTTCCAT 59.081 47.619 0.00 0.00 46.99 3.41
4997 14931 1.743996 CAGCTAAACCAGGAGCTTCC 58.256 55.000 0.00 0.00 46.99 3.46
4998 14932 1.090728 GCAGCTAAACCAGGAGCTTC 58.909 55.000 0.00 0.00 46.99 3.86
5001 14935 1.020437 GATGCAGCTAAACCAGGAGC 58.980 55.000 0.00 0.00 39.08 4.70
5002 14936 2.408271 TGATGCAGCTAAACCAGGAG 57.592 50.000 2.53 0.00 0.00 3.69
5004 14938 2.357009 GTGATGATGCAGCTAAACCAGG 59.643 50.000 2.53 0.00 0.00 4.45
5005 14939 3.011818 TGTGATGATGCAGCTAAACCAG 58.988 45.455 2.53 0.00 0.00 4.00
5006 14940 2.749076 GTGTGATGATGCAGCTAAACCA 59.251 45.455 2.53 0.00 0.00 3.67
5007 14941 2.749076 TGTGTGATGATGCAGCTAAACC 59.251 45.455 2.53 0.00 0.00 3.27
5011 14945 2.766345 TGTGTGTGATGATGCAGCTA 57.234 45.000 2.53 0.00 0.00 3.32
5012 14946 1.810755 CTTGTGTGTGATGATGCAGCT 59.189 47.619 2.53 0.00 0.00 4.24
5013 14947 1.135489 CCTTGTGTGTGATGATGCAGC 60.135 52.381 0.00 0.00 0.00 5.25
5014 14948 2.156917 ACCTTGTGTGTGATGATGCAG 58.843 47.619 0.00 0.00 0.00 4.41
5016 14950 3.338249 AGTACCTTGTGTGTGATGATGC 58.662 45.455 0.00 0.00 0.00 3.91
5017 14951 7.615582 AATTAGTACCTTGTGTGTGATGATG 57.384 36.000 0.00 0.00 0.00 3.07
5020 14954 9.647797 TTAGTAATTAGTACCTTGTGTGTGATG 57.352 33.333 0.00 0.00 32.58 3.07
5022 14956 9.480053 GTTTAGTAATTAGTACCTTGTGTGTGA 57.520 33.333 0.00 0.00 32.58 3.58
5024 14958 7.116805 GCGTTTAGTAATTAGTACCTTGTGTGT 59.883 37.037 0.00 0.00 32.58 3.72
5025 14959 7.450627 GCGTTTAGTAATTAGTACCTTGTGTG 58.549 38.462 0.00 0.00 32.58 3.82
5026 14960 6.308766 CGCGTTTAGTAATTAGTACCTTGTGT 59.691 38.462 0.00 0.00 32.58 3.72
5027 14961 6.308766 ACGCGTTTAGTAATTAGTACCTTGTG 59.691 38.462 5.58 1.23 32.58 3.33
5029 14963 6.237648 CCACGCGTTTAGTAATTAGTACCTTG 60.238 42.308 10.22 0.00 32.58 3.61
5031 14965 5.343249 CCACGCGTTTAGTAATTAGTACCT 58.657 41.667 10.22 0.00 32.58 3.08
5032 14966 4.026558 GCCACGCGTTTAGTAATTAGTACC 60.027 45.833 10.22 0.00 32.58 3.34
5034 14968 4.799949 CAGCCACGCGTTTAGTAATTAGTA 59.200 41.667 10.22 0.00 0.00 1.82
5036 14970 3.615496 ACAGCCACGCGTTTAGTAATTAG 59.385 43.478 10.22 0.00 0.00 1.73
5038 14972 2.419667 ACAGCCACGCGTTTAGTAATT 58.580 42.857 10.22 0.00 0.00 1.40
5039 14973 2.088950 ACAGCCACGCGTTTAGTAAT 57.911 45.000 10.22 0.00 0.00 1.89
5040 14974 1.527736 CAACAGCCACGCGTTTAGTAA 59.472 47.619 10.22 0.00 0.00 2.24
5041 14975 1.141645 CAACAGCCACGCGTTTAGTA 58.858 50.000 10.22 0.00 0.00 1.82
5043 14977 1.206578 CCAACAGCCACGCGTTTAG 59.793 57.895 10.22 1.93 0.00 1.85
5044 14978 2.255172 CCCAACAGCCACGCGTTTA 61.255 57.895 10.22 0.00 0.00 2.01
5045 14979 3.591835 CCCAACAGCCACGCGTTT 61.592 61.111 10.22 0.00 0.00 3.60
5075 15009 4.681978 AAGACGCGACCCACTGGC 62.682 66.667 15.93 0.00 33.59 4.85
5076 15010 2.432628 GAAGACGCGACCCACTGG 60.433 66.667 15.93 0.00 37.80 4.00
5077 15011 0.600255 AAAGAAGACGCGACCCACTG 60.600 55.000 15.93 0.00 0.00 3.66
5079 15013 0.511653 GAAAAGAAGACGCGACCCAC 59.488 55.000 15.93 0.65 0.00 4.61
5081 15015 0.320508 AGGAAAAGAAGACGCGACCC 60.321 55.000 15.93 0.66 0.00 4.46
5082 15016 1.509703 AAGGAAAAGAAGACGCGACC 58.490 50.000 15.93 3.72 0.00 4.79
5085 15019 4.921470 TGAATAAGGAAAAGAAGACGCG 57.079 40.909 3.53 3.53 0.00 6.01
5086 15020 5.960105 CGAATGAATAAGGAAAAGAAGACGC 59.040 40.000 0.00 0.00 0.00 5.19
5087 15021 7.290857 TCGAATGAATAAGGAAAAGAAGACG 57.709 36.000 0.00 0.00 0.00 4.18
5094 15357 7.255242 GGATGAGCATCGAATGAATAAGGAAAA 60.255 37.037 4.54 0.00 38.61 2.29
5100 15363 4.202451 TGGGGATGAGCATCGAATGAATAA 60.202 41.667 4.54 0.00 38.61 1.40
5104 15367 1.130777 TGGGGATGAGCATCGAATGA 58.869 50.000 4.54 0.00 38.61 2.57
5106 15369 2.553904 GGAATGGGGATGAGCATCGAAT 60.554 50.000 4.54 0.00 38.61 3.34
5108 15371 0.397941 GGAATGGGGATGAGCATCGA 59.602 55.000 4.54 0.00 38.61 3.59
5110 15373 3.371380 GGATAGGAATGGGGATGAGCATC 60.371 52.174 1.86 1.86 37.11 3.91
5114 15377 2.026449 GCTGGATAGGAATGGGGATGAG 60.026 54.545 0.00 0.00 0.00 2.90
5116 15379 1.005215 GGCTGGATAGGAATGGGGATG 59.995 57.143 0.00 0.00 0.00 3.51
5118 15381 1.127567 CGGCTGGATAGGAATGGGGA 61.128 60.000 0.00 0.00 0.00 4.81
5119 15382 1.376466 CGGCTGGATAGGAATGGGG 59.624 63.158 0.00 0.00 0.00 4.96
5120 15383 1.376466 CCGGCTGGATAGGAATGGG 59.624 63.158 5.28 0.00 37.49 4.00
5121 15384 1.302832 GCCGGCTGGATAGGAATGG 60.303 63.158 22.15 0.00 37.49 3.16
5123 15386 2.883828 CGGCCGGCTGGATAGGAAT 61.884 63.158 28.47 0.00 37.49 3.01
5138 15401 3.753070 CTACGGAGGAAGACGCGGC 62.753 68.421 12.47 7.86 0.00 6.53
5141 15404 2.104530 GGCTACGGAGGAAGACGC 59.895 66.667 0.00 0.00 0.00 5.19
5142 15405 1.139095 GTGGCTACGGAGGAAGACG 59.861 63.158 0.00 0.00 0.00 4.18
5189 15452 0.455633 GAACAAGGCGCATCAAGCTG 60.456 55.000 10.83 0.00 42.61 4.24
5190 15453 1.878775 GAACAAGGCGCATCAAGCT 59.121 52.632 10.83 0.00 42.61 3.74
5191 15454 1.512734 CGAACAAGGCGCATCAAGC 60.513 57.895 10.83 0.00 40.87 4.01
5192 15455 0.516877 TTCGAACAAGGCGCATCAAG 59.483 50.000 10.83 0.00 0.00 3.02
5194 15457 0.726827 GATTCGAACAAGGCGCATCA 59.273 50.000 10.83 0.00 32.89 3.07
5195 15458 0.315382 CGATTCGAACAAGGCGCATC 60.315 55.000 10.83 0.00 0.00 3.91
5196 15459 1.019278 ACGATTCGAACAAGGCGCAT 61.019 50.000 13.95 0.00 0.00 4.73
5197 15460 1.666553 ACGATTCGAACAAGGCGCA 60.667 52.632 13.95 0.00 0.00 6.09
5198 15461 1.225745 CACGATTCGAACAAGGCGC 60.226 57.895 13.95 0.00 0.00 6.53
5199 15462 0.179250 CACACGATTCGAACAAGGCG 60.179 55.000 13.95 2.34 0.00 5.52
5202 15465 2.131972 TCCACACACGATTCGAACAAG 58.868 47.619 13.95 0.00 0.00 3.16
5203 15466 2.226602 TCCACACACGATTCGAACAA 57.773 45.000 13.95 0.00 0.00 2.83
5205 15468 1.320555 CGATCCACACACGATTCGAAC 59.679 52.381 13.95 0.00 0.00 3.95
5206 15469 1.624487 CGATCCACACACGATTCGAA 58.376 50.000 13.95 0.00 0.00 3.71
5209 15472 1.752501 CGGCGATCCACACACGATTC 61.753 60.000 0.00 0.00 0.00 2.52
5212 15475 3.366915 TCGGCGATCCACACACGA 61.367 61.111 4.99 0.00 0.00 4.35
5213 15476 3.179265 GTCGGCGATCCACACACG 61.179 66.667 14.79 0.00 0.00 4.49
5234 15497 0.037877 CCATGGAGAGGGATGCATCC 59.962 60.000 33.90 33.90 46.41 3.51
5235 15498 0.608582 GCCATGGAGAGGGATGCATC 60.609 60.000 18.40 18.81 0.00 3.91
5236 15499 1.459369 GCCATGGAGAGGGATGCAT 59.541 57.895 18.40 0.00 0.00 3.96
5237 15500 2.760378 GGCCATGGAGAGGGATGCA 61.760 63.158 18.40 0.00 0.00 3.96
5239 15502 2.429058 CGGCCATGGAGAGGGATG 59.571 66.667 18.40 0.00 0.00 3.51
5240 15503 2.040464 ACGGCCATGGAGAGGGAT 60.040 61.111 18.40 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.