AutoCloner

Multiple sequence alignment - TraesCS1D01G039300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G039300	chr1D	100.000	3674	0	0	1	3674	19002892	18999219	0.000000e+00	6785.0
1	TraesCS1D01G039300	chr1D	89.586	2775	228	28	212	2957	19021005	19018263	0.000000e+00	3467.0
2	TraesCS1D01G039300	chr1D	88.624	2558	255	28	163	2710	19022250	19024781	0.000000e+00	3079.0
3	TraesCS1D01G039300	chr1D	85.577	416	24	18	3284	3670	19011661	19011253	1.590000e-108	403.0
4	TraesCS1D01G039300	chr1B	93.246	2917	162	21	58	2958	28308858	28305961	0.000000e+00	4263.0
5	TraesCS1D01G039300	chr1B	93.966	2801	151	12	163	2958	28324961	28322174	0.000000e+00	4220.0
6	TraesCS1D01G039300	chr1B	90.896	2724	203	23	191	2896	28376022	28373326	0.000000e+00	3615.0
7	TraesCS1D01G039300	chr1B	87.729	2624	276	27	163	2767	28483457	28486053	0.000000e+00	3020.0
8	TraesCS1D01G039300	chr1B	86.093	302	20	7	3284	3570	28372938	28372644	4.610000e-79	305.0
9	TraesCS1D01G039300	chr1B	95.062	81	2	1	2963	3041	28305837	28305757	3.850000e-25	126.0
10	TraesCS1D01G039300	chr1B	76.015	271	37	14	3199	3447	28304050	28303786	8.340000e-22	115.0
11	TraesCS1D01G039300	chr1B	91.358	81	7	0	3121	3201	28321184	28321104	1.080000e-20	111.0
12	TraesCS1D01G039300	chr1B	92.000	50	4	0	2991	3040	28442993	28442944	1.830000e-08	71.3
13	TraesCS1D01G039300	chr4A	93.748	2671	139	12	391	3042	675285704	675283043	0.000000e+00	3982.0
14	TraesCS1D01G039300	chr4A	93.496	123	6	1	3079	3201	675281806	675281686	8.100000e-42	182.0
15	TraesCS1D01G039300	chr1A	91.597	2749	192	24	237	2958	20927555	20924819	0.000000e+00	3760.0
16	TraesCS1D01G039300	chr1A	88.274	2746	256	37	212	2923	20932688	20929975	0.000000e+00	3227.0
17	TraesCS1D01G039300	chr1A	86.917	2828	291	33	58	2841	20935189	20937981	0.000000e+00	3099.0
18	TraesCS1D01G039300	chr1A	91.870	123	8	1	3079	3201	20924003	20923883	1.750000e-38	171.0
19	TraesCS1D01G039300	chr1A	97.143	35	0	1	1	34	20935113	20935147	1.430000e-04	58.4
20	TraesCS1D01G039300	chr5B	90.870	2574	207	14	388	2958	641833325	641835873	0.000000e+00	3426.0
21	TraesCS1D01G039300	chr5B	90.891	2536	204	19	443	2958	641822232	641824760	0.000000e+00	3378.0
22	TraesCS1D01G039300	chr5B	85.819	409	33	10	3284	3674	641836283	641836684	9.500000e-111	411.0
23	TraesCS1D01G039300	chr5B	83.654	208	7	7	60	246	641817863	641817662	1.750000e-38	171.0
24	TraesCS1D01G039300	chrUn	95.630	595	9	8	2465	3042	305781145	305780551	0.000000e+00	939.0
25	TraesCS1D01G039300	chrUn	93.496	123	6	1	3079	3201	305779314	305779194	8.100000e-42	182.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G039300	chr1D	18999219	19002892	3673	True	6785.000000	6785	100.000000	1	3674	1	chr1D.!!$R1	3673
1	TraesCS1D01G039300	chr1D	19018263	19021005	2742	True	3467.000000	3467	89.586000	212	2957	1	chr1D.!!$R3	2745
2	TraesCS1D01G039300	chr1D	19022250	19024781	2531	False	3079.000000	3079	88.624000	163	2710	1	chr1D.!!$F1	2547
3	TraesCS1D01G039300	chr1B	28483457	28486053	2596	False	3020.000000	3020	87.729000	163	2767	1	chr1B.!!$F1	2604
4	TraesCS1D01G039300	chr1B	28321104	28324961	3857	True	2165.500000	4220	92.662000	163	3201	2	chr1B.!!$R3	3038
5	TraesCS1D01G039300	chr1B	28372644	28376022	3378	True	1960.000000	3615	88.494500	191	3570	2	chr1B.!!$R4	3379
6	TraesCS1D01G039300	chr1B	28303786	28308858	5072	True	1501.333333	4263	88.107667	58	3447	3	chr1B.!!$R2	3389
7	TraesCS1D01G039300	chr4A	675281686	675285704	4018	True	2082.000000	3982	93.622000	391	3201	2	chr4A.!!$R1	2810
8	TraesCS1D01G039300	chr1A	20923883	20932688	8805	True	2386.000000	3760	90.580333	212	3201	3	chr1A.!!$R1	2989
9	TraesCS1D01G039300	chr1A	20935113	20937981	2868	False	1578.700000	3099	92.030000	1	2841	2	chr1A.!!$F1	2840
10	TraesCS1D01G039300	chr5B	641822232	641824760	2528	False	3378.000000	3378	90.891000	443	2958	1	chr5B.!!$F1	2515
11	TraesCS1D01G039300	chr5B	641833325	641836684	3359	False	1918.500000	3426	88.344500	388	3674	2	chr5B.!!$F2	3286
12	TraesCS1D01G039300	chrUn	305779194	305781145	1951	True	560.500000	939	94.563000	2465	3201	2	chrUn.!!$R1	736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
981	1108	0.250467	ACGAACATGTTCTGCCTGCT	60.25	50.0	30.45	9.81	37.44	4.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2804	8084	0.244721	GGAAACAACATGGCAGCTCC	59.755	55.0	0.0	0.0	0.0	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
63	83	3.186409	GCACGTTCATAACTCAAGCAGAA	59.814	43.478	0.00	0.00	0.00	3.02
92	112	7.997482	TGCACCTAGTTAAATTAACACACAAA	58.003	30.769	17.00	0.00	41.07	2.83
140	160	2.104622	TGAACACTTGAGCATGTGAGGA	59.895	45.455	19.37	3.81	39.09	3.71
159	179	1.537202	GACGCAAGAAAATGGAGCACT	59.463	47.619	0.00	0.00	43.62	4.40
177	197	1.181786	CTTGACTCGGCCTCTCTTCT	58.818	55.000	0.00	0.00	0.00	2.85
249	294	2.025321	CACCCACCCTGCCTATTTAACT	60.025	50.000	0.00	0.00	0.00	2.24
250	295	2.025321	ACCCACCCTGCCTATTTAACTG	60.025	50.000	0.00	0.00	0.00	3.16
379	456	1.271597	ACCTGCCCAGTTTCTAGCTTG	60.272	52.381	0.00	0.00	0.00	4.01
416	494	3.056179	TCTTTGCACATCACGATGGAGTA	60.056	43.478	11.54	1.02	42.91	2.59
421	499	2.354821	CACATCACGATGGAGTACGAGA	59.645	50.000	11.54	0.00	42.91	4.04
422	500	3.014623	ACATCACGATGGAGTACGAGAA	58.985	45.455	11.54	0.00	42.91	2.87
423	501	3.181499	ACATCACGATGGAGTACGAGAAC	60.181	47.826	11.54	0.00	42.91	3.01
424	502	2.429478	TCACGATGGAGTACGAGAACA	58.571	47.619	0.00	0.00	0.00	3.18
425	503	2.418976	TCACGATGGAGTACGAGAACAG	59.581	50.000	0.00	0.00	0.00	3.16
426	504	2.418976	CACGATGGAGTACGAGAACAGA	59.581	50.000	0.00	0.00	0.00	3.41
427	505	2.678836	ACGATGGAGTACGAGAACAGAG	59.321	50.000	0.00	0.00	0.00	3.35
428	506	2.032302	CGATGGAGTACGAGAACAGAGG	59.968	54.545	0.00	0.00	0.00	3.69
429	507	1.835494	TGGAGTACGAGAACAGAGGG	58.165	55.000	0.00	0.00	0.00	4.30
430	508	0.456628	GGAGTACGAGAACAGAGGGC	59.543	60.000	0.00	0.00	0.00	5.19
431	509	1.174783	GAGTACGAGAACAGAGGGCA	58.825	55.000	0.00	0.00	0.00	5.36
432	510	0.889306	AGTACGAGAACAGAGGGCAC	59.111	55.000	0.00	0.00	0.00	5.01
433	511	0.456312	GTACGAGAACAGAGGGCACG	60.456	60.000	0.00	0.00	0.00	5.34
434	512	0.892358	TACGAGAACAGAGGGCACGT	60.892	55.000	0.00	0.00	36.52	4.49
435	513	1.006102	CGAGAACAGAGGGCACGTT	60.006	57.895	0.00	0.00	0.00	3.99
436	514	1.284982	CGAGAACAGAGGGCACGTTG	61.285	60.000	0.00	0.00	0.00	4.10
437	515	1.569479	GAGAACAGAGGGCACGTTGC	61.569	60.000	0.00	0.00	44.08	4.17
464	563	3.112075	CGATGGCTTGTGCGTCGT	61.112	61.111	0.00	0.00	40.53	4.34
821	920	4.740695	GCTCATCAGGTACGAATCAGTTAC	59.259	45.833	0.00	0.00	0.00	2.50
981	1108	0.250467	ACGAACATGTTCTGCCTGCT	60.250	50.000	30.45	9.81	37.44	4.24
1224	6473	0.609131	ATGGCAGCAAGGTTAACGCT	60.609	50.000	0.00	0.00	36.10	5.07
1284	6533	2.438075	GAGCTGCAGCCCAAGGAG	60.438	66.667	34.39	0.00	43.38	3.69
1620	6869	0.551377	TTGGCCCCCAGATTGAGGTA	60.551	55.000	0.00	0.00	33.81	3.08
1648	6897	2.416747	CTGCAACCAAGTCGATTGAGA	58.583	47.619	8.56	0.00	41.83	3.27
1767	7016	1.827789	GGACAACACCAGGCTTGCA	60.828	57.895	0.00	0.00	0.00	4.08
1782	7031	2.025156	GCAATTGCTGCGATCGGG	59.975	61.111	23.21	0.00	42.37	5.14
2106	7355	1.300465	CATCGACCTCCGCCATCTG	60.300	63.158	0.00	0.00	38.37	2.90
2385	7634	4.298069	TTTGCCAAGCTTGCCGCC	62.298	61.111	21.43	9.00	40.39	6.13
2638	7887	2.202851	CGCTGCTGGAGTGCCTAG	60.203	66.667	0.00	0.00	34.31	3.02
2742	8020	7.946207	TCTGTATCTTCTTAGCTGATAAGTGG	58.054	38.462	11.96	6.87	41.52	4.00
2821	8101	0.537143	TCGGAGCTGCCATGTTGTTT	60.537	50.000	0.00	0.00	35.94	2.83
3064	9720	8.172352	AGGAAGTACAGTCTATGTATGCTAAG	57.828	38.462	0.00	0.00	45.94	2.18
3065	9721	7.780745	AGGAAGTACAGTCTATGTATGCTAAGT	59.219	37.037	0.00	0.00	45.94	2.24
3066	9722	8.414778	GGAAGTACAGTCTATGTATGCTAAGTT	58.585	37.037	0.00	0.00	45.94	2.66
3067	9723	9.239002	GAAGTACAGTCTATGTATGCTAAGTTG	57.761	37.037	0.00	0.00	45.94	3.16
3068	9724	7.203910	AGTACAGTCTATGTATGCTAAGTTGC	58.796	38.462	0.00	0.00	45.94	4.17
3069	9725	6.227298	ACAGTCTATGTATGCTAAGTTGCT	57.773	37.500	0.00	0.00	41.60	3.91
3070	9726	7.348080	ACAGTCTATGTATGCTAAGTTGCTA	57.652	36.000	0.00	0.00	41.60	3.49
3071	9727	7.782049	ACAGTCTATGTATGCTAAGTTGCTAA	58.218	34.615	0.00	0.00	41.60	3.09
3072	9728	7.707035	ACAGTCTATGTATGCTAAGTTGCTAAC	59.293	37.037	0.00	0.00	41.60	2.34
3073	9729	7.923344	CAGTCTATGTATGCTAAGTTGCTAACT	59.077	37.037	0.00	0.00	45.46	2.24
3220	10630	4.754667	GGACGCCGGTGGTTCCTC	62.755	72.222	21.14	7.00	0.00	3.71
3226	10636	1.966451	CCGGTGGTTCCTCTGTTGC	60.966	63.158	0.00	0.00	0.00	4.17
3229	10639	2.281484	TGGTTCCTCTGTTGCGGC	60.281	61.111	0.00	0.00	0.00	6.53
3246	10656	2.584608	CTACGGGGCAGGGAAGTG	59.415	66.667	0.00	0.00	0.00	3.16
3250	10660	3.971702	GGGGCAGGGAAGTGCTGT	61.972	66.667	0.00	0.00	43.45	4.40
3253	10663	1.529244	GGCAGGGAAGTGCTGTTGT	60.529	57.895	0.00	0.00	43.45	3.32
3279	10703	2.076863	CAAGGGACCTTGCTTTCTACG	58.923	52.381	17.34	0.00	45.38	3.51
3281	10705	2.532843	AGGGACCTTGCTTTCTACGTA	58.467	47.619	0.00	0.00	0.00	3.57
3415	10847	1.338674	CCTGAAATGGACTACACGGCA	60.339	52.381	0.00	0.00	0.00	5.69
3444	10876	5.879223	AGTATCTGCTGTCAAAGAATTCAGG	59.121	40.000	8.44	0.00	0.00	3.86
3447	10879	4.015084	CTGCTGTCAAAGAATTCAGGGAT	58.985	43.478	8.44	0.00	0.00	3.85
3448	10880	4.410099	TGCTGTCAAAGAATTCAGGGATT	58.590	39.130	8.44	0.00	0.00	3.01
3449	10881	4.834496	TGCTGTCAAAGAATTCAGGGATTT	59.166	37.500	8.44	0.00	0.00	2.17
3458	10904	4.952335	AGAATTCAGGGATTTGTGATGGAC	59.048	41.667	8.44	0.00	0.00	4.02
3523	10969	2.541907	AATGGAGCTGCCCACCAGT	61.542	57.895	11.27	8.29	43.71	4.00
3554	11001	3.040147	TGCTAGAACAAACGAGGAAGG	57.960	47.619	0.00	0.00	0.00	3.46
3584	11031	1.032657	GCTGACGAGCCTGGAGTAGA	61.033	60.000	0.00	0.00	39.57	2.59
3593	11040	4.621747	CGAGCCTGGAGTAGATTTGTTTCT	60.622	45.833	0.00	0.00	0.00	2.52
3594	11041	5.394224	CGAGCCTGGAGTAGATTTGTTTCTA	60.394	44.000	0.00	0.00	0.00	2.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	9.935682	CTTGAGTTATGAACGTGCAAATTATAT	57.064	29.630	0.00	0.00	36.23	0.86
33	34	7.908082	GCTTGAGTTATGAACGTGCAAATTATA	59.092	33.333	0.00	0.00	36.23	0.98
34	35	6.747280	GCTTGAGTTATGAACGTGCAAATTAT	59.253	34.615	0.00	0.00	36.23	1.28
35	36	6.083630	GCTTGAGTTATGAACGTGCAAATTA	58.916	36.000	0.00	0.00	36.23	1.40
36	37	4.917415	GCTTGAGTTATGAACGTGCAAATT	59.083	37.500	0.00	0.00	36.23	1.82
38	39	3.313803	TGCTTGAGTTATGAACGTGCAAA	59.686	39.130	0.00	0.00	36.23	3.68
39	40	2.875317	TGCTTGAGTTATGAACGTGCAA	59.125	40.909	0.00	0.00	36.23	4.08
42	43	4.686091	TCTTCTGCTTGAGTTATGAACGTG	59.314	41.667	0.00	0.00	36.23	4.49
43	44	4.883083	TCTTCTGCTTGAGTTATGAACGT	58.117	39.130	0.00	0.00	36.23	3.99
44	45	5.845985	TTCTTCTGCTTGAGTTATGAACG	57.154	39.130	0.00	0.00	36.23	3.95
45	46	6.026513	GCATTCTTCTGCTTGAGTTATGAAC	58.973	40.000	0.00	0.00	39.12	3.18
46	47	5.706833	TGCATTCTTCTGCTTGAGTTATGAA	59.293	36.000	0.00	0.00	42.75	2.57
47	48	5.122869	GTGCATTCTTCTGCTTGAGTTATGA	59.877	40.000	0.00	0.00	42.75	2.15
48	49	5.330295	GTGCATTCTTCTGCTTGAGTTATG	58.670	41.667	0.00	0.00	42.75	1.90
49	50	4.397417	GGTGCATTCTTCTGCTTGAGTTAT	59.603	41.667	0.00	0.00	42.75	1.89
50	51	3.753272	GGTGCATTCTTCTGCTTGAGTTA	59.247	43.478	0.00	0.00	42.75	2.24
52	53	2.157738	GGTGCATTCTTCTGCTTGAGT	58.842	47.619	0.00	0.00	42.75	3.41
53	54	2.434428	AGGTGCATTCTTCTGCTTGAG	58.566	47.619	0.00	0.00	42.75	3.02
54	55	2.574006	AGGTGCATTCTTCTGCTTGA	57.426	45.000	0.00	0.00	42.75	3.02
55	56	3.341823	ACTAGGTGCATTCTTCTGCTTG	58.658	45.455	0.00	0.00	42.75	4.01
63	83	8.512138	GTGTGTTAATTTAACTAGGTGCATTCT	58.488	33.333	17.70	0.00	39.38	2.40
140	160	1.609208	AGTGCTCCATTTTCTTGCGT	58.391	45.000	0.00	0.00	0.00	5.24
159	179	1.546476	GAAGAAGAGAGGCCGAGTCAA	59.454	52.381	0.00	0.00	0.00	3.18
177	197	3.577334	GATGGTTGGTGCCGGGGAA	62.577	63.158	2.18	0.00	0.00	3.97
249	294	1.274703	GGAATGGTGGGAGAGGAGCA	61.275	60.000	0.00	0.00	0.00	4.26
250	295	0.985490	AGGAATGGTGGGAGAGGAGC	60.985	60.000	0.00	0.00	0.00	4.70
335	388	2.288666	GCGCTGGATGAATTCTGGTAA	58.711	47.619	7.05	0.00	0.00	2.85
366	443	4.978580	GGAAAACAAGCAAGCTAGAAACTG	59.021	41.667	0.00	0.00	0.00	3.16
379	456	4.740205	GTGCAAAGAAGTAGGAAAACAAGC	59.260	41.667	0.00	0.00	0.00	4.01
416	494	1.745320	AACGTGCCCTCTGTTCTCGT	61.745	55.000	0.00	0.00	0.00	4.18
433	511	3.419759	ATCGTCGTTGGCGGCAAC	61.420	61.111	36.98	36.98	43.91	4.17
434	512	3.418913	CATCGTCGTTGGCGGCAA	61.419	61.111	21.79	21.79	43.91	4.52
440	518	1.497278	CACAAGCCATCGTCGTTGG	59.503	57.895	16.52	16.52	37.31	3.77
441	519	1.154413	GCACAAGCCATCGTCGTTG	60.154	57.895	0.00	0.00	33.58	4.10
857	974	9.751542	ACAGAAAAATAAGGAGTATAGACGATG	57.248	33.333	0.00	0.00	0.00	3.84
865	983	8.772250	TCCAGATCACAGAAAAATAAGGAGTAT	58.228	33.333	0.00	0.00	0.00	2.12
999	1126	0.943835	TGTTGACACGGACGAGCATG	60.944	55.000	0.00	0.00	0.00	4.06
1224	6473	1.447838	GATCTTGAACGCCTCCGCA	60.448	57.895	0.00	0.00	38.22	5.69
1284	6533	1.686800	ATTCACCATGGCAAGCCCC	60.687	57.895	13.04	0.00	34.56	5.80
1512	6761	0.806102	GCTTCTTCGCGAGTGCCATA	60.806	55.000	9.59	0.00	38.08	2.74
1620	6869	0.823356	ACTTGGTTGCAGCACGGATT	60.823	50.000	2.05	0.00	0.00	3.01
1648	6897	2.232452	CGTTGACAGAGTTGATCTCCCT	59.768	50.000	0.00	0.00	43.71	4.20
1767	7016	1.718757	GCTTCCCGATCGCAGCAATT	61.719	55.000	20.85	0.00	32.17	2.32
1782	7031	1.251251	ACTGGGCAAACATGAGCTTC	58.749	50.000	0.00	0.00	0.00	3.86
2106	7355	3.481453	GGCATCCTTAACATTCTCCTCC	58.519	50.000	0.00	0.00	0.00	4.30
2638	7887	0.670854	GGCTCACCGTTCCACTCTTC	60.671	60.000	0.00	0.00	0.00	2.87
2804	8084	0.244721	GGAAACAACATGGCAGCTCC	59.755	55.000	0.00	0.00	0.00	4.70
3097	9753	7.923414	ATGAGGTTGTTGAAGGTTATCTTAC	57.077	36.000	0.00	0.00	35.50	2.34
3184	10449	6.200475	GGCGTCCATATTAGTGTACTCTTTTC	59.800	42.308	2.25	0.00	0.00	2.29
3204	10614	3.692406	AGAGGAACCACCGGCGTC	61.692	66.667	6.01	0.00	44.74	5.19
3207	10617	1.966451	CAACAGAGGAACCACCGGC	60.966	63.158	0.00	0.00	44.74	6.13
3229	10639	2.584608	CACTTCCCTGCCCCGTAG	59.415	66.667	0.00	0.00	0.00	3.51
3239	10649	2.360801	TGCTAAAACAACAGCACTTCCC	59.639	45.455	0.00	0.00	42.68	3.97
3243	10653	2.362077	CCCTTGCTAAAACAACAGCACT	59.638	45.455	0.00	0.00	46.97	4.40
3246	10656	2.288213	GGTCCCTTGCTAAAACAACAGC	60.288	50.000	0.00	0.00	38.31	4.40
3273	10697	6.375455	ACCGGTTTATCTTTCTCTACGTAGAA	59.625	38.462	24.66	11.50	33.69	2.10
3279	10703	6.310711	CAGAACACCGGTTTATCTTTCTCTAC	59.689	42.308	2.97	0.00	37.36	2.59
3281	10705	5.011738	TCAGAACACCGGTTTATCTTTCTCT	59.988	40.000	2.97	0.00	37.36	3.10
3293	10717	1.821061	CTCTGCCTCAGAACACCGGT	61.821	60.000	0.00	0.00	40.18	5.28
3296	10720	0.248843	CTCCTCTGCCTCAGAACACC	59.751	60.000	0.00	0.00	40.18	4.16
3334	10758	2.616458	GGAGGCCAACCACCCATCT	61.616	63.158	5.01	0.00	40.66	2.90
3340	10772	2.358737	CTGACGGAGGCCAACCAC	60.359	66.667	17.12	11.31	39.06	4.16
3367	10799	3.020984	CGGCCACCCTGTAAATGTAAAT	58.979	45.455	2.24	0.00	0.00	1.40
3368	10800	2.438411	CGGCCACCCTGTAAATGTAAA	58.562	47.619	2.24	0.00	0.00	2.01
3369	10801	1.340211	CCGGCCACCCTGTAAATGTAA	60.340	52.381	2.24	0.00	0.00	2.41
3370	10802	0.253610	CCGGCCACCCTGTAAATGTA	59.746	55.000	2.24	0.00	0.00	2.29
3371	10803	1.001393	CCGGCCACCCTGTAAATGT	60.001	57.895	2.24	0.00	0.00	2.71
3372	10804	2.414785	GCCGGCCACCCTGTAAATG	61.415	63.158	18.11	0.00	0.00	2.32
3395	10827	1.338674	TGCCGTGTAGTCCATTTCAGG	60.339	52.381	0.00	0.00	0.00	3.86
3415	10847	6.842437	TTCTTTGACAGCAGATACTACTCT	57.158	37.500	0.00	0.00	0.00	3.24
3424	10856	3.072915	TCCCTGAATTCTTTGACAGCAGA	59.927	43.478	7.05	0.00	0.00	4.26
3425	10857	3.415212	TCCCTGAATTCTTTGACAGCAG	58.585	45.455	7.05	0.00	0.00	4.24
3444	10876	4.864247	CGGAAAAATGTCCATCACAAATCC	59.136	41.667	0.00	0.00	38.97	3.01
3447	10879	3.891977	TCCGGAAAAATGTCCATCACAAA	59.108	39.130	0.00	0.00	38.97	2.83
3448	10880	3.491342	TCCGGAAAAATGTCCATCACAA	58.509	40.909	0.00	0.00	38.97	3.33
3449	10881	3.081061	CTCCGGAAAAATGTCCATCACA	58.919	45.455	5.23	0.00	37.56	3.58
3458	10904	0.109132	GCCTGCACTCCGGAAAAATG	60.109	55.000	5.23	2.79	0.00	2.32
3572	11019	4.917906	AGAAACAAATCTACTCCAGGCT	57.082	40.909	0.00	0.00	0.00	4.58
3594	11041	8.082242	GCTGTTACAATCCTTACAAATCAAAGT	58.918	33.333	0.00	0.00	0.00	2.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.