Multiple sequence alignment - TraesCS1D01G038500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G038500 chr1D 100.000 2954 0 0 1 2954 18589182 18592135 0.000000e+00 5456
1 TraesCS1D01G038500 chr1D 91.679 1334 79 12 626 1951 18609885 18611194 0.000000e+00 1820
2 TraesCS1D01G038500 chr1D 82.676 1876 253 46 99 1951 18576690 18578516 0.000000e+00 1598
3 TraesCS1D01G038500 chr1D 88.808 1099 103 11 856 1951 18686517 18687598 0.000000e+00 1330
4 TraesCS1D01G038500 chr1D 83.683 429 37 13 1 410 18683005 18683419 1.000000e-99 374
5 TraesCS1D01G038500 chr1D 79.648 511 76 17 491 983 18576143 18576643 2.820000e-90 342
6 TraesCS1D01G038500 chr1D 88.079 151 15 3 2698 2846 18614279 18614428 3.030000e-40 176
7 TraesCS1D01G038500 chr1A 95.476 1658 66 5 299 1951 20434914 20436567 0.000000e+00 2638
8 TraesCS1D01G038500 chr1A 92.788 1026 69 5 928 1951 20537089 20538111 0.000000e+00 1480
9 TraesCS1D01G038500 chr1A 93.248 311 16 2 1 306 20434576 20434886 1.250000e-123 453
10 TraesCS1D01G038500 chr1B 94.274 751 40 1 1204 1951 27277166 27277916 0.000000e+00 1146
11 TraesCS1D01G038500 chr1B 91.326 807 35 10 411 1207 27272030 27272811 0.000000e+00 1070
12 TraesCS1D01G038500 chr1B 93.803 355 17 2 1970 2324 27249698 27250047 2.020000e-146 529
13 TraesCS1D01G038500 chr1B 91.205 307 14 5 1 306 27269716 27270010 3.550000e-109 405
14 TraesCS1D01G038500 chr1B 92.982 114 7 1 299 412 27270038 27270150 6.550000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G038500 chr1D 18589182 18592135 2953 False 5456.000000 5456 100.000000 1 2954 1 chr1D.!!$F1 2953
1 TraesCS1D01G038500 chr1D 18609885 18614428 4543 False 998.000000 1820 89.879000 626 2846 2 chr1D.!!$F3 2220
2 TraesCS1D01G038500 chr1D 18576143 18578516 2373 False 970.000000 1598 81.162000 99 1951 2 chr1D.!!$F2 1852
3 TraesCS1D01G038500 chr1D 18683005 18687598 4593 False 852.000000 1330 86.245500 1 1951 2 chr1D.!!$F4 1950
4 TraesCS1D01G038500 chr1A 20434576 20436567 1991 False 1545.500000 2638 94.362000 1 1951 2 chr1A.!!$F2 1950
5 TraesCS1D01G038500 chr1A 20537089 20538111 1022 False 1480.000000 1480 92.788000 928 1951 1 chr1A.!!$F1 1023
6 TraesCS1D01G038500 chr1B 27277166 27277916 750 False 1146.000000 1146 94.274000 1204 1951 1 chr1B.!!$F2 747
7 TraesCS1D01G038500 chr1B 27269716 27272811 3095 False 546.666667 1070 91.837667 1 1207 3 chr1B.!!$F3 1206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 5520 0.539051 CCCTCTCTGCCTGATTTCGT 59.461 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 9500 0.109132 CAAAATTGGGCCACGCTCTC 60.109 55.0 5.23 0.0 0.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 3.927142 CCTATCAACTAATTCGGCGGATC 59.073 47.826 7.21 0.00 0.00 3.36
90 92 1.483004 TCAACTAATTCGGCGGATCCA 59.517 47.619 13.41 0.00 34.01 3.41
306 761 2.290916 CTGACGACATGCTATCCGTACT 59.709 50.000 0.00 0.00 35.22 2.73
309 812 4.110482 GACGACATGCTATCCGTACTTTT 58.890 43.478 0.00 0.00 35.22 2.27
530 5072 8.988934 TCTTGATTCATTAGTAGAAACACACAC 58.011 33.333 0.00 0.00 29.22 3.82
580 5123 5.226396 TCACTTTTGTTGATAAATTGCGGG 58.774 37.500 0.00 0.00 0.00 6.13
601 5144 4.709886 GGGTTGATTATAGGTGGTTTGCTT 59.290 41.667 0.00 0.00 0.00 3.91
608 5151 8.034215 TGATTATAGGTGGTTTGCTTGATTTTG 58.966 33.333 0.00 0.00 0.00 2.44
655 5201 6.814954 AGCTTAATTCAGAAGAGGGTATCA 57.185 37.500 0.00 0.00 0.00 2.15
658 5204 7.936301 AGCTTAATTCAGAAGAGGGTATCATTC 59.064 37.037 0.00 0.00 0.00 2.67
916 5493 7.402054 ACATTAGATTTGTGGTCTGGACATAA 58.598 34.615 3.10 0.00 0.00 1.90
939 5516 2.254152 TGTACCCTCTCTGCCTGATT 57.746 50.000 0.00 0.00 0.00 2.57
943 5520 0.539051 CCCTCTCTGCCTGATTTCGT 59.461 55.000 0.00 0.00 0.00 3.85
1106 5683 3.727258 CCCTTCCCATGCCGACCA 61.727 66.667 0.00 0.00 0.00 4.02
1219 5796 1.134438 AACCTTCTTCGGCCTTCCCT 61.134 55.000 0.00 0.00 0.00 4.20
1222 5799 0.391793 CTTCTTCGGCCTTCCCTGTC 60.392 60.000 0.00 0.00 0.00 3.51
1441 6021 3.307975 CCTGGATGAAGACATGTCTGGTT 60.308 47.826 28.52 13.71 40.36 3.67
1501 6081 0.108615 AATCAGGTGCTCGGAACTCG 60.109 55.000 0.00 0.00 40.90 4.18
1611 6191 2.828520 CAGCATAGGGTCGGTCATAGAT 59.171 50.000 0.00 0.00 0.00 1.98
1620 6200 5.544176 AGGGTCGGTCATAGATATGATGTTT 59.456 40.000 5.86 0.00 43.82 2.83
1714 6294 7.582719 TGATAATGGCAAGTTAAGGGTATCTT 58.417 34.615 0.00 0.00 39.40 2.40
1906 6489 3.988379 TTGAATTTGAGGTGTGTCAGC 57.012 42.857 0.00 0.00 0.00 4.26
1951 6534 0.179018 GAAGGTGAGCAGTGTTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
1953 6536 1.148273 GGTGAGCAGTGTTGGGTGA 59.852 57.895 0.00 0.00 0.00 4.02
1954 6537 0.465460 GGTGAGCAGTGTTGGGTGAA 60.465 55.000 0.00 0.00 0.00 3.18
1955 6538 0.947244 GTGAGCAGTGTTGGGTGAAG 59.053 55.000 0.00 0.00 0.00 3.02
1956 6539 0.179020 TGAGCAGTGTTGGGTGAAGG 60.179 55.000 0.00 0.00 0.00 3.46
1957 6540 0.179018 GAGCAGTGTTGGGTGAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
1958 6541 0.466189 AGCAGTGTTGGGTGAAGGTG 60.466 55.000 0.00 0.00 0.00 4.00
1959 6542 0.465460 GCAGTGTTGGGTGAAGGTGA 60.465 55.000 0.00 0.00 0.00 4.02
1960 6543 1.597742 CAGTGTTGGGTGAAGGTGAG 58.402 55.000 0.00 0.00 0.00 3.51
1963 6546 0.179020 TGTTGGGTGAAGGTGAGCAG 60.179 55.000 0.00 0.00 0.00 4.24
1967 6550 0.603975 GGGTGAAGGTGAGCAGTGTC 60.604 60.000 0.00 0.00 0.00 3.67
1982 8919 2.094286 CAGTGTCCAAGAAGCTCTCGAT 60.094 50.000 0.00 0.00 0.00 3.59
1985 8922 2.300152 TGTCCAAGAAGCTCTCGATGTT 59.700 45.455 0.00 0.00 0.00 2.71
1987 8924 2.300152 TCCAAGAAGCTCTCGATGTTGT 59.700 45.455 0.00 0.00 0.00 3.32
1992 8929 4.992688 AGAAGCTCTCGATGTTGTCTTAG 58.007 43.478 0.00 0.00 0.00 2.18
1999 8936 5.105063 TCTCGATGTTGTCTTAGAATGCAG 58.895 41.667 0.00 0.00 0.00 4.41
2003 8940 5.349817 CGATGTTGTCTTAGAATGCAGAGTT 59.650 40.000 0.00 0.00 0.00 3.01
2007 8944 7.161404 TGTTGTCTTAGAATGCAGAGTTACAT 58.839 34.615 0.00 0.00 0.00 2.29
2016 8953 2.567169 TGCAGAGTTACATGCCTACACT 59.433 45.455 9.48 0.00 41.85 3.55
2017 8954 3.767131 TGCAGAGTTACATGCCTACACTA 59.233 43.478 9.48 0.00 41.85 2.74
2024 8961 6.947464 AGTTACATGCCTACACTAGAATTGT 58.053 36.000 0.00 0.00 0.00 2.71
2026 8963 7.980099 AGTTACATGCCTACACTAGAATTGTAC 59.020 37.037 0.00 0.00 0.00 2.90
2028 8965 6.707290 ACATGCCTACACTAGAATTGTACAA 58.293 36.000 11.41 11.41 0.00 2.41
2029 8966 6.818644 ACATGCCTACACTAGAATTGTACAAG 59.181 38.462 14.65 2.08 0.00 3.16
2030 8967 6.354794 TGCCTACACTAGAATTGTACAAGT 57.645 37.500 14.65 11.79 0.00 3.16
2031 8968 6.163476 TGCCTACACTAGAATTGTACAAGTG 58.837 40.000 14.13 16.89 42.53 3.16
2032 8969 6.014925 TGCCTACACTAGAATTGTACAAGTGA 60.015 38.462 24.52 8.79 39.93 3.41
2034 8971 7.036220 CCTACACTAGAATTGTACAAGTGAGG 58.964 42.308 24.52 21.00 39.93 3.86
2035 8972 5.238583 ACACTAGAATTGTACAAGTGAGGC 58.761 41.667 24.52 7.76 39.93 4.70
2036 8973 5.012148 ACACTAGAATTGTACAAGTGAGGCT 59.988 40.000 24.52 13.70 39.93 4.58
2052 8989 3.072915 TGAGGCTTTCATCCACTCTTGAA 59.927 43.478 0.00 0.00 0.00 2.69
2055 8992 3.760684 GGCTTTCATCCACTCTTGAACAT 59.239 43.478 0.00 0.00 31.87 2.71
2062 8999 4.771590 TCCACTCTTGAACATCAAATGC 57.228 40.909 0.00 0.00 35.73 3.56
2063 9000 3.189080 TCCACTCTTGAACATCAAATGCG 59.811 43.478 0.00 0.00 35.73 4.73
2064 9001 2.912967 CACTCTTGAACATCAAATGCGC 59.087 45.455 0.00 0.00 35.73 6.09
2065 9002 2.816087 ACTCTTGAACATCAAATGCGCT 59.184 40.909 9.73 0.00 35.73 5.92
2071 9008 3.181504 TGAACATCAAATGCGCTCATGAG 60.182 43.478 18.84 18.84 32.23 2.90
2072 9009 2.362736 ACATCAAATGCGCTCATGAGT 58.637 42.857 23.38 0.84 32.23 3.41
2073 9010 2.353889 ACATCAAATGCGCTCATGAGTC 59.646 45.455 23.38 15.65 32.23 3.36
2096 9033 1.234821 TGACAATGGCGTTTCCTGAC 58.765 50.000 0.00 0.00 35.26 3.51
2097 9034 1.202758 TGACAATGGCGTTTCCTGACT 60.203 47.619 0.00 0.00 35.26 3.41
2098 9035 1.880027 GACAATGGCGTTTCCTGACTT 59.120 47.619 0.00 0.00 35.26 3.01
2099 9036 1.880027 ACAATGGCGTTTCCTGACTTC 59.120 47.619 0.00 0.00 35.26 3.01
2100 9037 1.879380 CAATGGCGTTTCCTGACTTCA 59.121 47.619 0.00 0.00 35.26 3.02
2101 9038 2.270352 ATGGCGTTTCCTGACTTCAA 57.730 45.000 0.00 0.00 35.26 2.69
2102 9039 2.045561 TGGCGTTTCCTGACTTCAAA 57.954 45.000 0.00 0.00 35.26 2.69
2103 9040 1.673920 TGGCGTTTCCTGACTTCAAAC 59.326 47.619 0.00 0.00 35.26 2.93
2104 9041 1.673920 GGCGTTTCCTGACTTCAAACA 59.326 47.619 0.00 0.00 31.51 2.83
2105 9042 2.287009 GGCGTTTCCTGACTTCAAACAG 60.287 50.000 0.00 0.00 31.51 3.16
2106 9043 2.354821 GCGTTTCCTGACTTCAAACAGT 59.645 45.455 0.00 0.00 31.51 3.55
2107 9044 3.546218 GCGTTTCCTGACTTCAAACAGTC 60.546 47.826 0.00 0.00 43.23 3.51
2114 9051 3.971032 GACTTCAAACAGTCAAGGGTG 57.029 47.619 0.00 0.00 42.57 4.61
2115 9052 3.279434 GACTTCAAACAGTCAAGGGTGT 58.721 45.455 0.00 0.00 42.57 4.16
2116 9053 3.016736 ACTTCAAACAGTCAAGGGTGTG 58.983 45.455 0.00 0.00 0.00 3.82
2117 9054 2.799126 TCAAACAGTCAAGGGTGTGT 57.201 45.000 0.00 0.00 0.00 3.72
2118 9055 3.916359 TCAAACAGTCAAGGGTGTGTA 57.084 42.857 0.00 0.00 0.00 2.90
2119 9056 3.537580 TCAAACAGTCAAGGGTGTGTAC 58.462 45.455 0.00 0.00 0.00 2.90
2120 9057 2.616842 CAAACAGTCAAGGGTGTGTACC 59.383 50.000 0.00 0.00 46.76 3.34
2121 9058 1.802553 ACAGTCAAGGGTGTGTACCT 58.197 50.000 0.00 0.00 46.66 3.08
2122 9059 1.416401 ACAGTCAAGGGTGTGTACCTG 59.584 52.381 0.00 0.00 46.66 4.00
2123 9060 1.691976 CAGTCAAGGGTGTGTACCTGA 59.308 52.381 0.00 0.00 46.66 3.86
2126 9063 1.003118 TCAAGGGTGTGTACCTGATGC 59.997 52.381 0.00 0.00 46.66 3.91
2132 9069 1.085893 TGTGTACCTGATGCATTGCG 58.914 50.000 0.00 0.00 0.00 4.85
2133 9070 1.338579 TGTGTACCTGATGCATTGCGA 60.339 47.619 0.00 0.00 0.00 5.10
2134 9071 1.062587 GTGTACCTGATGCATTGCGAC 59.937 52.381 0.00 1.20 0.00 5.19
2136 9073 0.251634 TACCTGATGCATTGCGACCA 59.748 50.000 0.00 1.08 0.00 4.02
2157 9094 3.693085 CAGCTGGTCATGCTTTGTAGAAT 59.307 43.478 5.57 0.00 38.92 2.40
2161 9098 7.227314 CAGCTGGTCATGCTTTGTAGAATTATA 59.773 37.037 5.57 0.00 38.92 0.98
2162 9099 7.443575 AGCTGGTCATGCTTTGTAGAATTATAG 59.556 37.037 0.00 0.00 37.52 1.31
2163 9100 7.227512 GCTGGTCATGCTTTGTAGAATTATAGT 59.772 37.037 0.00 0.00 0.00 2.12
2164 9101 9.113838 CTGGTCATGCTTTGTAGAATTATAGTT 57.886 33.333 0.00 0.00 0.00 2.24
2165 9102 9.109393 TGGTCATGCTTTGTAGAATTATAGTTC 57.891 33.333 0.00 0.00 0.00 3.01
2166 9103 9.109393 GGTCATGCTTTGTAGAATTATAGTTCA 57.891 33.333 10.26 0.00 0.00 3.18
2186 9123 7.596494 AGTTCAACATGAAACATAGAATGTGG 58.404 34.615 0.00 0.00 44.07 4.17
2187 9124 7.231317 AGTTCAACATGAAACATAGAATGTGGT 59.769 33.333 0.00 0.00 44.07 4.16
2188 9125 7.144722 TCAACATGAAACATAGAATGTGGTC 57.855 36.000 0.00 0.00 44.07 4.02
2189 9126 6.150976 TCAACATGAAACATAGAATGTGGTCC 59.849 38.462 0.00 0.00 44.07 4.46
2190 9127 5.819991 ACATGAAACATAGAATGTGGTCCT 58.180 37.500 0.00 0.00 44.07 3.85
2191 9128 5.882557 ACATGAAACATAGAATGTGGTCCTC 59.117 40.000 0.00 0.00 44.07 3.71
2192 9129 5.497464 TGAAACATAGAATGTGGTCCTCA 57.503 39.130 0.00 0.00 44.07 3.86
2193 9130 5.245531 TGAAACATAGAATGTGGTCCTCAC 58.754 41.667 0.00 0.00 44.07 3.51
2194 9131 5.013079 TGAAACATAGAATGTGGTCCTCACT 59.987 40.000 0.00 0.00 44.07 3.41
2195 9132 4.478206 ACATAGAATGTGGTCCTCACTG 57.522 45.455 0.00 0.00 46.20 3.66
2196 9133 3.840666 ACATAGAATGTGGTCCTCACTGT 59.159 43.478 0.00 0.00 46.20 3.55
2197 9134 4.287067 ACATAGAATGTGGTCCTCACTGTT 59.713 41.667 0.00 0.00 46.20 3.16
2198 9135 5.483937 ACATAGAATGTGGTCCTCACTGTTA 59.516 40.000 0.00 0.00 46.20 2.41
2199 9136 4.543590 AGAATGTGGTCCTCACTGTTAG 57.456 45.455 0.00 0.00 46.20 2.34
2200 9137 2.770164 ATGTGGTCCTCACTGTTAGC 57.230 50.000 0.00 0.00 46.20 3.09
2201 9138 1.717032 TGTGGTCCTCACTGTTAGCT 58.283 50.000 0.00 0.00 46.20 3.32
2202 9139 2.884320 TGTGGTCCTCACTGTTAGCTA 58.116 47.619 0.00 0.00 46.20 3.32
2203 9140 3.441101 TGTGGTCCTCACTGTTAGCTAT 58.559 45.455 0.00 0.00 46.20 2.97
2204 9141 3.838317 TGTGGTCCTCACTGTTAGCTATT 59.162 43.478 0.00 0.00 46.20 1.73
2205 9142 5.020795 TGTGGTCCTCACTGTTAGCTATTA 58.979 41.667 0.00 0.00 46.20 0.98
2206 9143 5.105473 TGTGGTCCTCACTGTTAGCTATTAC 60.105 44.000 0.00 0.00 46.20 1.89
2207 9144 5.020795 TGGTCCTCACTGTTAGCTATTACA 58.979 41.667 0.00 0.00 0.00 2.41
2208 9145 5.105473 TGGTCCTCACTGTTAGCTATTACAC 60.105 44.000 0.00 0.00 0.00 2.90
2209 9146 5.105473 GGTCCTCACTGTTAGCTATTACACA 60.105 44.000 0.00 0.00 0.00 3.72
2210 9147 6.407074 GGTCCTCACTGTTAGCTATTACACAT 60.407 42.308 0.00 0.00 0.00 3.21
2211 9148 7.201884 GGTCCTCACTGTTAGCTATTACACATA 60.202 40.741 0.00 0.00 0.00 2.29
2212 9149 8.195436 GTCCTCACTGTTAGCTATTACACATAA 58.805 37.037 0.00 0.00 0.00 1.90
2213 9150 8.195436 TCCTCACTGTTAGCTATTACACATAAC 58.805 37.037 0.00 0.00 0.00 1.89
2214 9151 7.438459 CCTCACTGTTAGCTATTACACATAACC 59.562 40.741 0.00 0.00 0.00 2.85
2215 9152 8.074613 TCACTGTTAGCTATTACACATAACCT 57.925 34.615 0.00 0.00 0.00 3.50
2216 9153 7.979537 TCACTGTTAGCTATTACACATAACCTG 59.020 37.037 0.00 0.00 0.00 4.00
2217 9154 6.761714 ACTGTTAGCTATTACACATAACCTGC 59.238 38.462 0.00 0.00 0.00 4.85
2218 9155 6.645306 TGTTAGCTATTACACATAACCTGCA 58.355 36.000 0.00 0.00 0.00 4.41
2219 9156 6.761242 TGTTAGCTATTACACATAACCTGCAG 59.239 38.462 6.78 6.78 0.00 4.41
2220 9157 5.614324 AGCTATTACACATAACCTGCAGA 57.386 39.130 17.39 0.00 0.00 4.26
2221 9158 5.989477 AGCTATTACACATAACCTGCAGAA 58.011 37.500 17.39 0.00 0.00 3.02
2222 9159 5.817816 AGCTATTACACATAACCTGCAGAAC 59.182 40.000 17.39 0.00 0.00 3.01
2223 9160 5.584649 GCTATTACACATAACCTGCAGAACA 59.415 40.000 17.39 0.00 0.00 3.18
2224 9161 6.260936 GCTATTACACATAACCTGCAGAACAT 59.739 38.462 17.39 1.38 0.00 2.71
2225 9162 7.441157 GCTATTACACATAACCTGCAGAACATA 59.559 37.037 17.39 2.71 0.00 2.29
2226 9163 9.325198 CTATTACACATAACCTGCAGAACATAA 57.675 33.333 17.39 3.30 0.00 1.90
2227 9164 8.752005 ATTACACATAACCTGCAGAACATAAT 57.248 30.769 17.39 5.42 0.00 1.28
2228 9165 8.574251 TTACACATAACCTGCAGAACATAATT 57.426 30.769 17.39 0.35 0.00 1.40
2229 9166 6.855836 ACACATAACCTGCAGAACATAATTG 58.144 36.000 17.39 5.04 0.00 2.32
2230 9167 5.745294 CACATAACCTGCAGAACATAATTGC 59.255 40.000 17.39 0.00 38.30 3.56
2231 9168 5.418524 ACATAACCTGCAGAACATAATTGCA 59.581 36.000 17.39 0.00 44.81 4.08
2232 9169 4.870123 AACCTGCAGAACATAATTGCAA 57.130 36.364 17.39 0.00 46.08 4.08
2233 9170 4.178545 ACCTGCAGAACATAATTGCAAC 57.821 40.909 17.39 0.00 46.08 4.17
2234 9171 3.573538 ACCTGCAGAACATAATTGCAACA 59.426 39.130 17.39 0.00 46.08 3.33
2235 9172 4.171005 CCTGCAGAACATAATTGCAACAG 58.829 43.478 17.39 0.00 46.08 3.16
2236 9173 3.577667 TGCAGAACATAATTGCAACAGC 58.422 40.909 0.00 0.00 44.13 4.40
2237 9174 3.005578 TGCAGAACATAATTGCAACAGCA 59.994 39.130 0.00 0.00 44.13 4.41
2238 9175 3.611113 GCAGAACATAATTGCAACAGCAG 59.389 43.478 0.00 0.00 39.82 4.24
2239 9176 4.616604 GCAGAACATAATTGCAACAGCAGA 60.617 41.667 0.00 0.00 39.82 4.26
2268 9249 6.176183 CAGGACCATGAGTTTCTTCACTAAT 58.824 40.000 0.00 0.00 0.00 1.73
2272 9253 7.064728 GGACCATGAGTTTCTTCACTAATACAC 59.935 40.741 0.00 0.00 0.00 2.90
2279 9260 4.202245 TCTTCACTAATACACAGCACCC 57.798 45.455 0.00 0.00 0.00 4.61
2285 9266 3.774766 ACTAATACACAGCACCCATGAGA 59.225 43.478 0.00 0.00 0.00 3.27
2286 9267 3.719268 AATACACAGCACCCATGAGAA 57.281 42.857 0.00 0.00 0.00 2.87
2287 9268 2.768253 TACACAGCACCCATGAGAAG 57.232 50.000 0.00 0.00 0.00 2.85
2288 9269 1.059098 ACACAGCACCCATGAGAAGA 58.941 50.000 0.00 0.00 0.00 2.87
2289 9270 1.632409 ACACAGCACCCATGAGAAGAT 59.368 47.619 0.00 0.00 0.00 2.40
2309 9290 9.286170 AGAAGATAATCCATGATCAAGAACATG 57.714 33.333 11.91 11.91 42.12 3.21
2320 9301 9.445878 CATGATCAAGAACATGGCTATATAGTT 57.554 33.333 11.38 0.00 39.79 2.24
2356 9337 9.578439 AACTGGTTGTAAAGATAATACGAGTAC 57.422 33.333 0.00 0.00 0.00 2.73
2357 9338 8.742777 ACTGGTTGTAAAGATAATACGAGTACA 58.257 33.333 0.00 0.00 0.00 2.90
2361 9342 9.357652 GTTGTAAAGATAATACGAGTACAACCA 57.642 33.333 11.04 0.00 41.65 3.67
2393 9374 2.292569 CACCTGCATAACCATCATCAGC 59.707 50.000 0.00 0.00 0.00 4.26
2394 9375 2.092267 ACCTGCATAACCATCATCAGCA 60.092 45.455 0.00 0.00 0.00 4.41
2395 9376 2.292569 CCTGCATAACCATCATCAGCAC 59.707 50.000 0.00 0.00 0.00 4.40
2396 9377 3.211865 CTGCATAACCATCATCAGCACT 58.788 45.455 0.00 0.00 0.00 4.40
2397 9378 4.383173 CTGCATAACCATCATCAGCACTA 58.617 43.478 0.00 0.00 0.00 2.74
2398 9379 4.129380 TGCATAACCATCATCAGCACTAC 58.871 43.478 0.00 0.00 0.00 2.73
2399 9380 4.129380 GCATAACCATCATCAGCACTACA 58.871 43.478 0.00 0.00 0.00 2.74
2400 9381 4.758674 GCATAACCATCATCAGCACTACAT 59.241 41.667 0.00 0.00 0.00 2.29
2403 9384 4.767578 ACCATCATCAGCACTACATCTT 57.232 40.909 0.00 0.00 0.00 2.40
2404 9385 4.449131 ACCATCATCAGCACTACATCTTG 58.551 43.478 0.00 0.00 0.00 3.02
2405 9386 4.080695 ACCATCATCAGCACTACATCTTGT 60.081 41.667 0.00 0.00 0.00 3.16
2406 9387 4.272748 CCATCATCAGCACTACATCTTGTG 59.727 45.833 0.00 0.00 37.26 3.33
2407 9388 4.541973 TCATCAGCACTACATCTTGTGT 57.458 40.909 0.00 0.00 44.95 3.72
2408 9389 4.248058 TCATCAGCACTACATCTTGTGTG 58.752 43.478 0.00 0.00 42.24 3.82
2422 9403 0.827089 TGTGTGCCATGAACCCTTGG 60.827 55.000 0.00 0.00 39.77 3.61
2427 9408 2.427095 GTGCCATGAACCCTTGGTATTC 59.573 50.000 0.00 0.00 39.19 1.75
2443 9427 9.413734 CCTTGGTATTCCTCTATCTTCATTTTT 57.586 33.333 0.00 0.00 34.23 1.94
2446 9430 9.973661 TGGTATTCCTCTATCTTCATTTTTCAA 57.026 29.630 0.00 0.00 34.23 2.69
2459 9443 5.668471 TCATTTTTCAAAATCTGTGTGCCA 58.332 33.333 0.00 0.00 36.52 4.92
2495 9479 5.472137 TGTATGCATCATGGATGAGAATGTG 59.528 40.000 0.19 0.00 42.09 3.21
2503 9487 4.212143 TGGATGAGAATGTGGAGTCTTG 57.788 45.455 0.00 0.00 0.00 3.02
2510 9494 8.674263 ATGAGAATGTGGAGTCTTGATTATTC 57.326 34.615 0.00 0.00 0.00 1.75
2511 9495 7.623630 TGAGAATGTGGAGTCTTGATTATTCA 58.376 34.615 0.00 0.00 0.00 2.57
2512 9496 8.270030 TGAGAATGTGGAGTCTTGATTATTCAT 58.730 33.333 0.00 0.00 0.00 2.57
2513 9497 9.770097 GAGAATGTGGAGTCTTGATTATTCATA 57.230 33.333 0.00 0.00 0.00 2.15
2518 9502 9.551734 TGTGGAGTCTTGATTATTCATAATGAG 57.448 33.333 0.00 0.00 33.37 2.90
2521 9505 8.934825 GGAGTCTTGATTATTCATAATGAGAGC 58.065 37.037 0.00 0.00 33.37 4.09
2522 9506 8.531622 AGTCTTGATTATTCATAATGAGAGCG 57.468 34.615 0.00 0.00 33.37 5.03
2523 9507 8.147058 AGTCTTGATTATTCATAATGAGAGCGT 58.853 33.333 0.00 0.00 33.37 5.07
2524 9508 8.219769 GTCTTGATTATTCATAATGAGAGCGTG 58.780 37.037 0.00 0.00 33.37 5.34
2525 9509 7.386025 TCTTGATTATTCATAATGAGAGCGTGG 59.614 37.037 0.00 0.00 33.37 4.94
2526 9510 5.409520 TGATTATTCATAATGAGAGCGTGGC 59.590 40.000 0.00 0.00 33.37 5.01
2527 9511 1.953559 TTCATAATGAGAGCGTGGCC 58.046 50.000 0.00 0.00 0.00 5.36
2528 9512 0.106708 TCATAATGAGAGCGTGGCCC 59.893 55.000 0.00 0.00 0.00 5.80
2529 9513 0.179048 CATAATGAGAGCGTGGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
2530 9514 0.546122 ATAATGAGAGCGTGGCCCAA 59.454 50.000 0.00 0.00 0.00 4.12
2536 9520 0.539438 AGAGCGTGGCCCAATTTTGA 60.539 50.000 0.00 0.00 0.00 2.69
2541 9525 2.612721 GCGTGGCCCAATTTTGAAGATT 60.613 45.455 0.00 0.00 0.00 2.40
2544 9528 3.189080 GTGGCCCAATTTTGAAGATTTGC 59.811 43.478 0.00 0.00 0.00 3.68
2545 9529 3.181447 TGGCCCAATTTTGAAGATTTGCA 60.181 39.130 0.00 0.00 0.00 4.08
2555 9539 7.984422 TTTTGAAGATTTGCAGATGTCTCTA 57.016 32.000 0.00 0.00 0.00 2.43
2561 9545 8.436046 AAGATTTGCAGATGTCTCTATTCTTC 57.564 34.615 0.00 0.00 0.00 2.87
2564 9548 5.528043 TGCAGATGTCTCTATTCTTCCTC 57.472 43.478 0.00 0.00 0.00 3.71
2574 9558 9.480861 TGTCTCTATTCTTCCTCTTAAATCTGA 57.519 33.333 0.00 0.00 0.00 3.27
2630 9665 5.141182 TGTTCCCTTGTAAATGGCTAACAA 58.859 37.500 3.02 0.00 30.94 2.83
2634 9669 7.309770 TCCCTTGTAAATGGCTAACAATTTT 57.690 32.000 0.00 0.00 33.01 1.82
2635 9670 8.423906 TCCCTTGTAAATGGCTAACAATTTTA 57.576 30.769 0.00 0.00 33.01 1.52
2637 9672 9.495572 CCCTTGTAAATGGCTAACAATTTTAAA 57.504 29.630 0.00 0.00 33.01 1.52
2644 9679 9.791801 AAATGGCTAACAATTTTAAACTTGGAT 57.208 25.926 18.96 11.60 0.00 3.41
2647 9682 8.861086 TGGCTAACAATTTTAAACTTGGATGTA 58.139 29.630 18.96 7.66 0.00 2.29
2648 9683 9.699703 GGCTAACAATTTTAAACTTGGATGTAA 57.300 29.630 18.96 1.77 0.00 2.41
2669 9706 2.024176 TAGGGAAGTCAAGTGAGGCA 57.976 50.000 0.00 0.00 0.00 4.75
2671 9708 0.108585 GGGAAGTCAAGTGAGGCACA 59.891 55.000 0.00 0.00 36.74 4.57
2672 9709 1.517242 GGAAGTCAAGTGAGGCACAG 58.483 55.000 0.00 0.00 36.74 3.66
2673 9710 0.871057 GAAGTCAAGTGAGGCACAGC 59.129 55.000 0.00 0.00 36.74 4.40
2678 9716 1.150081 AAGTGAGGCACAGCAAGCT 59.850 52.632 0.00 0.00 36.74 3.74
2679 9717 0.397941 AAGTGAGGCACAGCAAGCTA 59.602 50.000 0.00 0.00 36.74 3.32
2682 9720 0.325933 TGAGGCACAGCAAGCTACAT 59.674 50.000 0.00 0.00 0.00 2.29
2695 9733 4.090930 GCAAGCTACATCAACATTTTGCAG 59.909 41.667 0.00 0.00 39.41 4.41
2702 9740 6.403866 ACATCAACATTTTGCAGGACTAAA 57.596 33.333 0.00 0.00 32.17 1.85
2704 9742 7.271511 ACATCAACATTTTGCAGGACTAAAAA 58.728 30.769 0.00 0.00 32.17 1.94
2754 9818 2.224843 TGTCAATCCTGGTGCTGATGTT 60.225 45.455 0.00 0.00 0.00 2.71
2781 9846 3.306917 TGATTCAAGCATGCAACCAAG 57.693 42.857 21.98 2.63 0.00 3.61
2784 9849 4.020928 TGATTCAAGCATGCAACCAAGAAT 60.021 37.500 21.98 17.31 0.00 2.40
2785 9850 3.306917 TCAAGCATGCAACCAAGAATG 57.693 42.857 21.98 4.53 0.00 2.67
2803 9868 5.774179 AGAATGGAATGGAATGGATCAAGT 58.226 37.500 0.00 0.00 0.00 3.16
2812 9877 6.387192 TGGAATGGATCAAGTAGAAAGGAA 57.613 37.500 0.00 0.00 0.00 3.36
2815 9880 4.202245 TGGATCAAGTAGAAAGGAACCG 57.798 45.455 0.00 0.00 0.00 4.44
2824 9889 0.321387 GAAAGGAACCGGACCTGACC 60.321 60.000 21.31 12.04 37.85 4.02
2839 9904 0.838987 TGACCTGGGTGGGGAAGTAC 60.839 60.000 0.00 0.00 41.11 2.73
2846 9911 0.546598 GGTGGGGAAGTACCAGATGG 59.453 60.000 0.00 0.00 39.00 3.51
2858 9923 2.691409 CCAGATGGTATGTTGACCGT 57.309 50.000 0.00 0.00 42.99 4.83
2859 9924 2.279741 CCAGATGGTATGTTGACCGTG 58.720 52.381 0.00 0.00 42.99 4.94
2860 9925 2.354704 CCAGATGGTATGTTGACCGTGT 60.355 50.000 0.00 0.00 42.99 4.49
2861 9926 2.672874 CAGATGGTATGTTGACCGTGTG 59.327 50.000 0.00 0.00 41.73 3.82
2862 9927 2.565391 AGATGGTATGTTGACCGTGTGA 59.435 45.455 0.00 0.00 42.99 3.58
2863 9928 3.197766 AGATGGTATGTTGACCGTGTGAT 59.802 43.478 0.00 0.00 42.99 3.06
2864 9929 2.967362 TGGTATGTTGACCGTGTGATC 58.033 47.619 0.00 0.00 42.99 2.92
2865 9930 2.300437 TGGTATGTTGACCGTGTGATCA 59.700 45.455 0.00 0.00 42.99 2.92
2866 9931 3.244249 TGGTATGTTGACCGTGTGATCAA 60.244 43.478 0.00 0.00 42.99 2.57
2867 9932 3.749088 GGTATGTTGACCGTGTGATCAAA 59.251 43.478 0.00 0.00 36.62 2.69
2868 9933 4.394920 GGTATGTTGACCGTGTGATCAAAT 59.605 41.667 0.00 0.00 36.62 2.32
2869 9934 4.685169 ATGTTGACCGTGTGATCAAATC 57.315 40.909 0.00 0.00 36.62 2.17
2870 9935 3.738982 TGTTGACCGTGTGATCAAATCT 58.261 40.909 0.00 0.00 36.62 2.40
2871 9936 4.133820 TGTTGACCGTGTGATCAAATCTT 58.866 39.130 0.00 0.00 36.62 2.40
2872 9937 4.578516 TGTTGACCGTGTGATCAAATCTTT 59.421 37.500 0.00 0.00 36.62 2.52
2873 9938 5.067153 TGTTGACCGTGTGATCAAATCTTTT 59.933 36.000 0.00 0.00 36.62 2.27
2874 9939 5.766150 TGACCGTGTGATCAAATCTTTTT 57.234 34.783 0.00 0.00 0.00 1.94
2897 9962 8.973835 TTTTTAGATTAAACCTTAATGCACGG 57.026 30.769 0.00 0.00 0.00 4.94
2898 9963 4.632538 AGATTAAACCTTAATGCACGGC 57.367 40.909 0.00 0.00 0.00 5.68
2899 9964 3.380320 AGATTAAACCTTAATGCACGGCC 59.620 43.478 0.00 0.00 0.00 6.13
2900 9965 1.088306 TAAACCTTAATGCACGGCCG 58.912 50.000 26.86 26.86 0.00 6.13
2901 9966 0.606944 AAACCTTAATGCACGGCCGA 60.607 50.000 35.90 10.61 0.00 5.54
2902 9967 1.024579 AACCTTAATGCACGGCCGAG 61.025 55.000 35.90 27.15 0.00 4.63
2903 9968 2.180204 CCTTAATGCACGGCCGAGG 61.180 63.158 35.90 22.50 0.00 4.63
2904 9969 1.449601 CTTAATGCACGGCCGAGGT 60.450 57.895 35.90 14.26 0.00 3.85
2905 9970 0.179094 CTTAATGCACGGCCGAGGTA 60.179 55.000 35.90 22.92 0.00 3.08
2906 9971 0.249676 TTAATGCACGGCCGAGGTAA 59.750 50.000 35.90 18.23 0.00 2.85
2907 9972 0.466543 TAATGCACGGCCGAGGTAAT 59.533 50.000 35.90 17.95 0.00 1.89
2908 9973 0.393808 AATGCACGGCCGAGGTAATT 60.394 50.000 35.90 21.47 0.00 1.40
2909 9974 0.393808 ATGCACGGCCGAGGTAATTT 60.394 50.000 35.90 2.60 0.00 1.82
2910 9975 0.606944 TGCACGGCCGAGGTAATTTT 60.607 50.000 35.90 1.64 0.00 1.82
2911 9976 1.338864 TGCACGGCCGAGGTAATTTTA 60.339 47.619 35.90 2.46 0.00 1.52
2912 9977 1.738908 GCACGGCCGAGGTAATTTTAA 59.261 47.619 35.90 0.00 0.00 1.52
2913 9978 2.162008 GCACGGCCGAGGTAATTTTAAA 59.838 45.455 35.90 0.00 0.00 1.52
2914 9979 3.729762 GCACGGCCGAGGTAATTTTAAAG 60.730 47.826 35.90 0.00 0.00 1.85
2915 9980 3.011818 ACGGCCGAGGTAATTTTAAAGG 58.988 45.455 35.90 0.00 0.00 3.11
2916 9981 3.272581 CGGCCGAGGTAATTTTAAAGGA 58.727 45.455 24.07 0.00 0.00 3.36
2917 9982 3.881089 CGGCCGAGGTAATTTTAAAGGAT 59.119 43.478 24.07 0.00 0.00 3.24
2918 9983 4.024302 CGGCCGAGGTAATTTTAAAGGATC 60.024 45.833 24.07 0.00 0.00 3.36
2919 9984 4.885325 GGCCGAGGTAATTTTAAAGGATCA 59.115 41.667 0.00 0.00 0.00 2.92
2920 9985 5.008712 GGCCGAGGTAATTTTAAAGGATCAG 59.991 44.000 0.00 0.00 0.00 2.90
2921 9986 5.820947 GCCGAGGTAATTTTAAAGGATCAGA 59.179 40.000 0.00 0.00 0.00 3.27
2922 9987 6.486993 GCCGAGGTAATTTTAAAGGATCAGAT 59.513 38.462 0.00 0.00 0.00 2.90
2923 9988 7.308049 GCCGAGGTAATTTTAAAGGATCAGATC 60.308 40.741 1.18 1.18 0.00 2.75
2924 9989 7.934120 CCGAGGTAATTTTAAAGGATCAGATCT 59.066 37.037 10.36 0.00 0.00 2.75
2925 9990 8.768955 CGAGGTAATTTTAAAGGATCAGATCTG 58.231 37.037 17.07 17.07 0.00 2.90
2926 9991 9.620259 GAGGTAATTTTAAAGGATCAGATCTGT 57.380 33.333 21.92 9.83 0.00 3.41
2936 10001 8.674263 AAAGGATCAGATCTGTAATTAAGCAG 57.326 34.615 21.92 0.00 0.00 4.24
2937 10002 6.229733 AGGATCAGATCTGTAATTAAGCAGC 58.770 40.000 21.92 2.44 33.09 5.25
2938 10003 5.994054 GGATCAGATCTGTAATTAAGCAGCA 59.006 40.000 21.92 0.00 33.09 4.41
2939 10004 6.484643 GGATCAGATCTGTAATTAAGCAGCAA 59.515 38.462 21.92 0.00 33.09 3.91
2940 10005 6.668541 TCAGATCTGTAATTAAGCAGCAAC 57.331 37.500 21.92 0.00 33.09 4.17
2941 10006 5.291858 TCAGATCTGTAATTAAGCAGCAACG 59.708 40.000 21.92 0.00 33.09 4.10
2942 10007 4.572389 AGATCTGTAATTAAGCAGCAACGG 59.428 41.667 0.00 0.00 33.09 4.44
2943 10008 3.006940 TCTGTAATTAAGCAGCAACGGG 58.993 45.455 0.00 0.00 33.09 5.28
2944 10009 1.470890 TGTAATTAAGCAGCAACGGGC 59.529 47.619 0.00 0.00 45.30 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 620 1.059369 CGTGCGCGGAATCAAGAAG 59.941 57.895 12.87 0.00 0.00 2.85
306 761 3.003275 GTCACGCAGTTCCATCAGAAAAA 59.997 43.478 0.00 0.00 41.61 1.94
309 812 1.069978 TGTCACGCAGTTCCATCAGAA 59.930 47.619 0.00 0.00 41.61 3.02
396 906 4.020839 TGAATTACTATAAGCTACCGGCCC 60.021 45.833 0.00 0.00 43.05 5.80
505 5047 8.993121 AGTGTGTGTTTCTACTAATGAATCAAG 58.007 33.333 0.00 0.00 0.00 3.02
515 5057 5.606505 TCAATGCAGTGTGTGTTTCTACTA 58.393 37.500 14.62 0.00 0.00 1.82
530 5072 3.203716 TCAGAGCAGCTAATCAATGCAG 58.796 45.455 0.00 0.00 42.45 4.41
577 5120 3.066203 GCAAACCACCTATAATCAACCCG 59.934 47.826 0.00 0.00 0.00 5.28
580 5123 6.509418 TCAAGCAAACCACCTATAATCAAC 57.491 37.500 0.00 0.00 0.00 3.18
916 5493 3.928754 TCAGGCAGAGAGGGTACATAAT 58.071 45.455 0.00 0.00 0.00 1.28
939 5516 8.604640 TGTATAACAAGATTACCACAAACGAA 57.395 30.769 0.00 0.00 0.00 3.85
943 5520 8.301002 GGCTTTGTATAACAAGATTACCACAAA 58.699 33.333 0.00 0.00 39.53 2.83
1219 5796 0.762418 TCTTTTGCCCCTTCTCGACA 59.238 50.000 0.00 0.00 0.00 4.35
1222 5799 1.443802 GACTCTTTTGCCCCTTCTCG 58.556 55.000 0.00 0.00 0.00 4.04
1441 6021 3.571828 GCAGTATCCATCTGTAGCAGAGA 59.428 47.826 5.09 0.00 44.08 3.10
1501 6081 0.310543 TCAACGATGGCAGCAACAAC 59.689 50.000 2.73 0.00 0.00 3.32
1620 6200 9.898152 TCAATGACATACAACATACCTTCATAA 57.102 29.630 0.00 0.00 0.00 1.90
1714 6294 1.746470 TCAAGTAGACGCTCGATCCA 58.254 50.000 0.00 0.00 0.00 3.41
1855 6435 2.747446 GCTTGATACCACCAATCGTGTT 59.253 45.455 0.00 0.00 41.26 3.32
1951 6534 0.836606 TTGGACACTGCTCACCTTCA 59.163 50.000 0.00 0.00 0.00 3.02
1953 6536 1.131638 TCTTGGACACTGCTCACCTT 58.868 50.000 0.00 0.00 0.00 3.50
1954 6537 1.071385 CTTCTTGGACACTGCTCACCT 59.929 52.381 0.00 0.00 0.00 4.00
1955 6538 1.517242 CTTCTTGGACACTGCTCACC 58.483 55.000 0.00 0.00 0.00 4.02
1956 6539 0.871057 GCTTCTTGGACACTGCTCAC 59.129 55.000 0.00 0.00 0.00 3.51
1957 6540 0.761187 AGCTTCTTGGACACTGCTCA 59.239 50.000 0.00 0.00 0.00 4.26
1958 6541 1.001860 AGAGCTTCTTGGACACTGCTC 59.998 52.381 0.00 0.00 44.85 4.26
1959 6542 1.001860 GAGAGCTTCTTGGACACTGCT 59.998 52.381 0.00 0.00 0.00 4.24
1960 6543 1.437625 GAGAGCTTCTTGGACACTGC 58.562 55.000 0.00 0.00 0.00 4.40
1963 6546 2.266554 CATCGAGAGCTTCTTGGACAC 58.733 52.381 0.00 0.00 0.00 3.67
1967 6550 2.670414 GACAACATCGAGAGCTTCTTGG 59.330 50.000 0.00 0.00 0.00 3.61
1982 8919 6.521162 TGTAACTCTGCATTCTAAGACAACA 58.479 36.000 0.00 0.00 0.00 3.33
1985 8922 5.582269 GCATGTAACTCTGCATTCTAAGACA 59.418 40.000 0.00 0.00 38.28 3.41
1987 8924 5.104776 AGGCATGTAACTCTGCATTCTAAGA 60.105 40.000 0.00 0.00 40.18 2.10
1992 8929 4.034510 GTGTAGGCATGTAACTCTGCATTC 59.965 45.833 0.00 0.00 40.18 2.67
1999 8936 7.042335 ACAATTCTAGTGTAGGCATGTAACTC 58.958 38.462 0.00 0.00 0.00 3.01
2003 8940 7.412853 TGTACAATTCTAGTGTAGGCATGTA 57.587 36.000 0.00 0.00 32.23 2.29
2007 8944 6.014925 TCACTTGTACAATTCTAGTGTAGGCA 60.015 38.462 19.20 2.87 38.82 4.75
2016 8953 6.530120 TGAAAGCCTCACTTGTACAATTCTA 58.470 36.000 9.13 0.00 39.09 2.10
2017 8954 5.376625 TGAAAGCCTCACTTGTACAATTCT 58.623 37.500 9.13 0.00 39.09 2.40
2034 8971 4.456911 TGATGTTCAAGAGTGGATGAAAGC 59.543 41.667 0.00 0.00 37.31 3.51
2035 8972 6.564709 TTGATGTTCAAGAGTGGATGAAAG 57.435 37.500 0.00 0.00 37.31 2.62
2036 8973 6.957920 TTTGATGTTCAAGAGTGGATGAAA 57.042 33.333 0.00 0.00 37.70 2.69
2052 8989 2.353889 GACTCATGAGCGCATTTGATGT 59.646 45.455 22.83 8.84 30.68 3.06
2055 8992 2.274437 GAGACTCATGAGCGCATTTGA 58.726 47.619 22.83 8.12 30.68 2.69
2071 9008 2.159517 GGAAACGCCATTGTCATGAGAC 60.160 50.000 0.00 0.00 39.98 3.36
2072 9009 2.083774 GGAAACGCCATTGTCATGAGA 58.916 47.619 0.00 0.00 36.34 3.27
2073 9010 2.086869 AGGAAACGCCATTGTCATGAG 58.913 47.619 0.00 0.00 40.02 2.90
2096 9033 3.016736 ACACACCCTTGACTGTTTGAAG 58.983 45.455 0.00 0.00 0.00 3.02
2097 9034 3.080300 ACACACCCTTGACTGTTTGAA 57.920 42.857 0.00 0.00 0.00 2.69
2098 9035 2.799126 ACACACCCTTGACTGTTTGA 57.201 45.000 0.00 0.00 0.00 2.69
2099 9036 2.616842 GGTACACACCCTTGACTGTTTG 59.383 50.000 0.00 0.00 39.11 2.93
2100 9037 2.927028 GGTACACACCCTTGACTGTTT 58.073 47.619 0.00 0.00 39.11 2.83
2101 9038 2.632987 GGTACACACCCTTGACTGTT 57.367 50.000 0.00 0.00 39.11 3.16
2111 9048 1.133025 GCAATGCATCAGGTACACACC 59.867 52.381 0.00 0.00 46.19 4.16
2112 9049 1.202065 CGCAATGCATCAGGTACACAC 60.202 52.381 5.91 0.00 0.00 3.82
2113 9050 1.085893 CGCAATGCATCAGGTACACA 58.914 50.000 5.91 0.00 0.00 3.72
2114 9051 1.062587 GTCGCAATGCATCAGGTACAC 59.937 52.381 5.91 0.00 0.00 2.90
2115 9052 1.368641 GTCGCAATGCATCAGGTACA 58.631 50.000 5.91 0.00 0.00 2.90
2116 9053 0.657840 GGTCGCAATGCATCAGGTAC 59.342 55.000 5.91 0.00 0.00 3.34
2117 9054 0.251634 TGGTCGCAATGCATCAGGTA 59.748 50.000 5.91 0.00 0.00 3.08
2118 9055 1.002257 TGGTCGCAATGCATCAGGT 60.002 52.632 5.91 0.00 0.00 4.00
2119 9056 1.725665 CTGGTCGCAATGCATCAGG 59.274 57.895 5.91 0.00 0.00 3.86
2120 9057 1.063649 GCTGGTCGCAATGCATCAG 59.936 57.895 5.91 9.53 38.92 2.90
2121 9058 1.377594 AGCTGGTCGCAATGCATCA 60.378 52.632 5.91 0.00 42.61 3.07
2122 9059 1.063649 CAGCTGGTCGCAATGCATC 59.936 57.895 5.57 0.00 42.61 3.91
2123 9060 2.412323 CCAGCTGGTCGCAATGCAT 61.412 57.895 25.53 0.00 42.61 3.96
2134 9071 1.741706 CTACAAAGCATGACCAGCTGG 59.258 52.381 31.60 31.60 42.53 4.85
2136 9073 3.423539 TTCTACAAAGCATGACCAGCT 57.576 42.857 0.00 0.00 45.97 4.24
2139 9076 9.109393 GAACTATAATTCTACAAAGCATGACCA 57.891 33.333 0.00 0.00 0.00 4.02
2161 9098 7.231317 ACCACATTCTATGTTTCATGTTGAACT 59.769 33.333 0.00 0.00 42.70 3.01
2162 9099 7.370383 ACCACATTCTATGTTTCATGTTGAAC 58.630 34.615 0.00 0.00 42.70 3.18
2163 9100 7.309133 GGACCACATTCTATGTTTCATGTTGAA 60.309 37.037 0.00 0.00 42.70 2.69
2164 9101 6.150976 GGACCACATTCTATGTTTCATGTTGA 59.849 38.462 0.00 0.00 42.70 3.18
2165 9102 6.151648 AGGACCACATTCTATGTTTCATGTTG 59.848 38.462 0.00 0.00 42.70 3.33
2166 9103 6.248433 AGGACCACATTCTATGTTTCATGTT 58.752 36.000 0.00 0.00 42.70 2.71
2167 9104 5.819991 AGGACCACATTCTATGTTTCATGT 58.180 37.500 0.00 0.00 42.70 3.21
2168 9105 5.882000 TGAGGACCACATTCTATGTTTCATG 59.118 40.000 0.00 0.00 42.70 3.07
2169 9106 5.882557 GTGAGGACCACATTCTATGTTTCAT 59.117 40.000 0.00 0.00 45.03 2.57
2170 9107 5.245531 GTGAGGACCACATTCTATGTTTCA 58.754 41.667 0.00 0.00 45.03 2.69
2171 9108 5.803020 GTGAGGACCACATTCTATGTTTC 57.197 43.478 0.00 0.00 45.03 2.78
2183 9120 4.473477 AATAGCTAACAGTGAGGACCAC 57.527 45.455 0.00 0.00 46.03 4.16
2184 9121 5.020795 TGTAATAGCTAACAGTGAGGACCA 58.979 41.667 0.00 0.00 0.00 4.02
2185 9122 5.105473 TGTGTAATAGCTAACAGTGAGGACC 60.105 44.000 0.00 0.00 0.00 4.46
2186 9123 5.962433 TGTGTAATAGCTAACAGTGAGGAC 58.038 41.667 0.00 0.00 0.00 3.85
2187 9124 6.791867 ATGTGTAATAGCTAACAGTGAGGA 57.208 37.500 0.00 0.00 0.00 3.71
2188 9125 7.438459 GGTTATGTGTAATAGCTAACAGTGAGG 59.562 40.741 0.00 0.00 0.00 3.86
2189 9126 8.198109 AGGTTATGTGTAATAGCTAACAGTGAG 58.802 37.037 0.00 0.00 0.00 3.51
2190 9127 7.979537 CAGGTTATGTGTAATAGCTAACAGTGA 59.020 37.037 0.00 0.00 0.00 3.41
2191 9128 7.254455 GCAGGTTATGTGTAATAGCTAACAGTG 60.254 40.741 0.00 0.00 0.00 3.66
2192 9129 6.761714 GCAGGTTATGTGTAATAGCTAACAGT 59.238 38.462 0.00 0.00 0.00 3.55
2193 9130 6.761242 TGCAGGTTATGTGTAATAGCTAACAG 59.239 38.462 0.00 0.00 0.00 3.16
2194 9131 6.645306 TGCAGGTTATGTGTAATAGCTAACA 58.355 36.000 0.00 0.00 0.00 2.41
2195 9132 6.984474 TCTGCAGGTTATGTGTAATAGCTAAC 59.016 38.462 15.13 0.00 0.00 2.34
2196 9133 7.119709 TCTGCAGGTTATGTGTAATAGCTAA 57.880 36.000 15.13 0.00 0.00 3.09
2197 9134 6.724893 TCTGCAGGTTATGTGTAATAGCTA 57.275 37.500 15.13 0.00 0.00 3.32
2198 9135 5.614324 TCTGCAGGTTATGTGTAATAGCT 57.386 39.130 15.13 0.00 0.00 3.32
2199 9136 5.584649 TGTTCTGCAGGTTATGTGTAATAGC 59.415 40.000 15.13 0.00 0.00 2.97
2200 9137 7.792374 ATGTTCTGCAGGTTATGTGTAATAG 57.208 36.000 15.13 0.00 0.00 1.73
2201 9138 9.845740 ATTATGTTCTGCAGGTTATGTGTAATA 57.154 29.630 15.13 0.00 0.00 0.98
2202 9139 8.752005 ATTATGTTCTGCAGGTTATGTGTAAT 57.248 30.769 15.13 5.76 0.00 1.89
2203 9140 8.458052 CAATTATGTTCTGCAGGTTATGTGTAA 58.542 33.333 15.13 3.75 0.00 2.41
2204 9141 7.415095 GCAATTATGTTCTGCAGGTTATGTGTA 60.415 37.037 15.13 0.00 36.09 2.90
2205 9142 6.625740 GCAATTATGTTCTGCAGGTTATGTGT 60.626 38.462 15.13 0.00 36.09 3.72
2206 9143 5.745294 GCAATTATGTTCTGCAGGTTATGTG 59.255 40.000 15.13 4.53 36.09 3.21
2207 9144 5.418524 TGCAATTATGTTCTGCAGGTTATGT 59.581 36.000 15.13 0.00 41.01 2.29
2208 9145 5.893687 TGCAATTATGTTCTGCAGGTTATG 58.106 37.500 15.13 4.15 41.01 1.90
2209 9146 6.071447 TGTTGCAATTATGTTCTGCAGGTTAT 60.071 34.615 15.13 8.18 46.08 1.89
2210 9147 5.242615 TGTTGCAATTATGTTCTGCAGGTTA 59.757 36.000 15.13 0.11 46.08 2.85
2211 9148 4.039004 TGTTGCAATTATGTTCTGCAGGTT 59.961 37.500 15.13 0.00 46.08 3.50
2212 9149 3.573538 TGTTGCAATTATGTTCTGCAGGT 59.426 39.130 15.13 0.42 46.08 4.00
2213 9150 4.171005 CTGTTGCAATTATGTTCTGCAGG 58.829 43.478 15.13 0.00 46.08 4.85
2214 9151 3.611113 GCTGTTGCAATTATGTTCTGCAG 59.389 43.478 7.63 7.63 46.08 4.41
2215 9152 3.577667 GCTGTTGCAATTATGTTCTGCA 58.422 40.909 0.59 0.00 44.04 4.41
2229 9166 1.168407 TCCTGCACTTCTGCTGTTGC 61.168 55.000 7.35 7.35 44.57 4.17
2230 9167 0.590195 GTCCTGCACTTCTGCTGTTG 59.410 55.000 0.00 0.00 44.57 3.33
2231 9168 0.536006 GGTCCTGCACTTCTGCTGTT 60.536 55.000 0.00 0.00 44.57 3.16
2232 9169 1.072159 GGTCCTGCACTTCTGCTGT 59.928 57.895 0.00 0.00 44.57 4.40
2233 9170 0.322277 ATGGTCCTGCACTTCTGCTG 60.322 55.000 0.00 0.00 44.57 4.41
2234 9171 0.322277 CATGGTCCTGCACTTCTGCT 60.322 55.000 0.00 0.00 44.57 4.24
2235 9172 0.321919 TCATGGTCCTGCACTTCTGC 60.322 55.000 0.00 0.00 44.52 4.26
2236 9173 1.002888 ACTCATGGTCCTGCACTTCTG 59.997 52.381 0.00 0.00 0.00 3.02
2237 9174 1.356124 ACTCATGGTCCTGCACTTCT 58.644 50.000 0.00 0.00 0.00 2.85
2238 9175 2.191128 AACTCATGGTCCTGCACTTC 57.809 50.000 0.00 0.00 0.00 3.01
2239 9176 2.107204 AGAAACTCATGGTCCTGCACTT 59.893 45.455 0.00 0.00 0.00 3.16
2253 9190 6.128526 GGTGCTGTGTATTAGTGAAGAAACTC 60.129 42.308 0.00 0.00 0.00 3.01
2268 9249 2.256306 TCTTCTCATGGGTGCTGTGTA 58.744 47.619 0.00 0.00 0.00 2.90
2272 9253 4.070716 GGATTATCTTCTCATGGGTGCTG 58.929 47.826 0.00 0.00 0.00 4.41
2279 9260 9.503399 TTCTTGATCATGGATTATCTTCTCATG 57.497 33.333 8.60 3.76 37.23 3.07
2356 9337 9.814899 TTATGCAGGTGAATTTTATAATGGTTG 57.185 29.630 0.00 0.00 0.00 3.77
2357 9338 9.816354 GTTATGCAGGTGAATTTTATAATGGTT 57.184 29.630 0.00 0.00 0.00 3.67
2373 9354 2.092267 TGCTGATGATGGTTATGCAGGT 60.092 45.455 0.00 0.00 0.00 4.00
2403 9384 3.499158 ACCAAGGGTTCATGGCACACA 62.499 52.381 0.00 0.00 40.51 3.72
2404 9385 0.827507 ACCAAGGGTTCATGGCACAC 60.828 55.000 0.00 0.00 40.51 3.82
2405 9386 0.774276 TACCAAGGGTTCATGGCACA 59.226 50.000 0.00 0.00 40.51 4.57
2406 9387 2.143876 ATACCAAGGGTTCATGGCAC 57.856 50.000 0.00 0.00 40.51 5.01
2407 9388 2.622977 GGAATACCAAGGGTTCATGGCA 60.623 50.000 0.00 0.00 40.51 4.92
2408 9389 2.031870 GGAATACCAAGGGTTCATGGC 58.968 52.381 0.00 0.00 40.51 4.40
2468 9452 4.007659 TCTCATCCATGATGCATACATGC 58.992 43.478 23.02 7.25 42.31 4.06
2470 9454 6.151144 CACATTCTCATCCATGATGCATACAT 59.849 38.462 0.00 2.33 39.63 2.29
2471 9455 5.472137 CACATTCTCATCCATGATGCATACA 59.528 40.000 0.00 0.00 39.63 2.29
2495 9479 8.934825 GCTCTCATTATGAATAATCAAGACTCC 58.065 37.037 0.00 0.00 39.49 3.85
2503 9487 5.163814 GGCCACGCTCTCATTATGAATAATC 60.164 44.000 0.00 0.00 30.91 1.75
2510 9494 0.179048 TGGGCCACGCTCTCATTATG 60.179 55.000 0.00 0.00 0.00 1.90
2511 9495 0.546122 TTGGGCCACGCTCTCATTAT 59.454 50.000 5.23 0.00 0.00 1.28
2512 9496 0.546122 ATTGGGCCACGCTCTCATTA 59.454 50.000 5.23 0.00 0.00 1.90
2513 9497 0.323725 AATTGGGCCACGCTCTCATT 60.324 50.000 5.23 0.00 0.00 2.57
2514 9498 0.323725 AAATTGGGCCACGCTCTCAT 60.324 50.000 5.23 0.00 0.00 2.90
2515 9499 0.539438 AAAATTGGGCCACGCTCTCA 60.539 50.000 5.23 0.00 0.00 3.27
2516 9500 0.109132 CAAAATTGGGCCACGCTCTC 60.109 55.000 5.23 0.00 0.00 3.20
2517 9501 0.539438 TCAAAATTGGGCCACGCTCT 60.539 50.000 5.23 0.00 0.00 4.09
2518 9502 0.316841 TTCAAAATTGGGCCACGCTC 59.683 50.000 5.23 0.00 0.00 5.03
2521 9505 3.317603 AATCTTCAAAATTGGGCCACG 57.682 42.857 5.23 0.00 0.00 4.94
2522 9506 3.189080 GCAAATCTTCAAAATTGGGCCAC 59.811 43.478 5.23 0.00 0.00 5.01
2523 9507 3.181447 TGCAAATCTTCAAAATTGGGCCA 60.181 39.130 0.00 0.00 0.00 5.36
2524 9508 3.410508 TGCAAATCTTCAAAATTGGGCC 58.589 40.909 0.00 0.00 0.00 5.80
2525 9509 4.317488 TCTGCAAATCTTCAAAATTGGGC 58.683 39.130 0.00 0.00 0.00 5.36
2526 9510 5.935789 ACATCTGCAAATCTTCAAAATTGGG 59.064 36.000 0.00 0.00 0.00 4.12
2527 9511 6.872020 AGACATCTGCAAATCTTCAAAATTGG 59.128 34.615 0.00 0.00 0.00 3.16
2528 9512 7.813148 AGAGACATCTGCAAATCTTCAAAATTG 59.187 33.333 0.00 0.00 33.30 2.32
2529 9513 7.893658 AGAGACATCTGCAAATCTTCAAAATT 58.106 30.769 0.00 0.00 33.30 1.82
2530 9514 7.463961 AGAGACATCTGCAAATCTTCAAAAT 57.536 32.000 0.00 0.00 33.30 1.82
2536 9520 7.498570 GGAAGAATAGAGACATCTGCAAATCTT 59.501 37.037 0.00 0.00 36.96 2.40
2541 9525 5.660417 AGAGGAAGAATAGAGACATCTGCAA 59.340 40.000 0.00 0.00 36.96 4.08
2605 9635 5.417580 TGTTAGCCATTTACAAGGGAACATC 59.582 40.000 0.00 0.00 33.14 3.06
2634 9669 8.607713 TGACTTCCCTATTTACATCCAAGTTTA 58.392 33.333 0.00 0.00 0.00 2.01
2635 9670 7.466804 TGACTTCCCTATTTACATCCAAGTTT 58.533 34.615 0.00 0.00 0.00 2.66
2637 9672 6.636454 TGACTTCCCTATTTACATCCAAGT 57.364 37.500 0.00 0.00 0.00 3.16
2638 9673 7.066284 CACTTGACTTCCCTATTTACATCCAAG 59.934 40.741 0.00 0.00 34.18 3.61
2642 9677 6.763610 CCTCACTTGACTTCCCTATTTACATC 59.236 42.308 0.00 0.00 0.00 3.06
2644 9679 5.570844 GCCTCACTTGACTTCCCTATTTACA 60.571 44.000 0.00 0.00 0.00 2.41
2647 9682 3.330701 TGCCTCACTTGACTTCCCTATTT 59.669 43.478 0.00 0.00 0.00 1.40
2648 9683 2.912956 TGCCTCACTTGACTTCCCTATT 59.087 45.455 0.00 0.00 0.00 1.73
2649 9684 2.237392 GTGCCTCACTTGACTTCCCTAT 59.763 50.000 0.00 0.00 0.00 2.57
2650 9685 1.623811 GTGCCTCACTTGACTTCCCTA 59.376 52.381 0.00 0.00 0.00 3.53
2651 9686 0.398318 GTGCCTCACTTGACTTCCCT 59.602 55.000 0.00 0.00 0.00 4.20
2654 9689 0.871057 GCTGTGCCTCACTTGACTTC 59.129 55.000 0.00 0.00 35.11 3.01
2655 9690 0.181114 TGCTGTGCCTCACTTGACTT 59.819 50.000 0.00 0.00 35.11 3.01
2669 9706 5.224888 CAAAATGTTGATGTAGCTTGCTGT 58.775 37.500 5.26 0.00 36.83 4.40
2671 9708 4.240096 GCAAAATGTTGATGTAGCTTGCT 58.760 39.130 0.00 0.00 36.83 3.91
2672 9709 3.989167 TGCAAAATGTTGATGTAGCTTGC 59.011 39.130 0.00 0.00 36.83 4.01
2673 9710 4.624024 CCTGCAAAATGTTGATGTAGCTTG 59.376 41.667 0.00 0.00 36.83 4.01
2678 9716 7.517614 TTTAGTCCTGCAAAATGTTGATGTA 57.482 32.000 0.00 0.00 36.83 2.29
2679 9717 6.403866 TTTAGTCCTGCAAAATGTTGATGT 57.596 33.333 0.00 0.00 36.83 3.06
2702 9740 8.999431 ACGAAATCATGTGTACTAGTTGATTTT 58.001 29.630 23.57 12.74 43.41 1.82
2704 9742 8.443160 CAACGAAATCATGTGTACTAGTTGATT 58.557 33.333 12.09 12.09 38.35 2.57
2710 9748 7.572759 ACAAACAACGAAATCATGTGTACTAG 58.427 34.615 0.00 0.00 0.00 2.57
2712 9750 6.037720 TGACAAACAACGAAATCATGTGTACT 59.962 34.615 0.00 0.00 0.00 2.73
2713 9751 6.195868 TGACAAACAACGAAATCATGTGTAC 58.804 36.000 0.00 0.00 0.00 2.90
2715 9753 5.242069 TGACAAACAACGAAATCATGTGT 57.758 34.783 0.00 0.00 0.00 3.72
2716 9754 6.129115 GGATTGACAAACAACGAAATCATGTG 60.129 38.462 0.00 0.00 41.52 3.21
2717 9755 5.920273 GGATTGACAAACAACGAAATCATGT 59.080 36.000 0.00 0.00 41.52 3.21
2718 9756 6.088483 CAGGATTGACAAACAACGAAATCATG 59.912 38.462 0.00 0.00 41.52 3.07
2720 9758 5.507149 CCAGGATTGACAAACAACGAAATCA 60.507 40.000 0.00 0.00 41.52 2.57
2754 9818 3.665190 TGCATGCTTGAATCAAATGCAA 58.335 36.364 24.63 13.35 41.50 4.08
2781 9846 7.000472 TCTACTTGATCCATTCCATTCCATTC 59.000 38.462 0.00 0.00 0.00 2.67
2784 9849 5.974156 TCTACTTGATCCATTCCATTCCA 57.026 39.130 0.00 0.00 0.00 3.53
2785 9850 6.264067 CCTTTCTACTTGATCCATTCCATTCC 59.736 42.308 0.00 0.00 0.00 3.01
2787 9852 6.973642 TCCTTTCTACTTGATCCATTCCATT 58.026 36.000 0.00 0.00 0.00 3.16
2789 9854 6.180472 GTTCCTTTCTACTTGATCCATTCCA 58.820 40.000 0.00 0.00 0.00 3.53
2790 9855 5.590663 GGTTCCTTTCTACTTGATCCATTCC 59.409 44.000 0.00 0.00 0.00 3.01
2792 9857 5.186198 CGGTTCCTTTCTACTTGATCCATT 58.814 41.667 0.00 0.00 0.00 3.16
2794 9859 3.055385 CCGGTTCCTTTCTACTTGATCCA 60.055 47.826 0.00 0.00 0.00 3.41
2803 9868 1.897802 GTCAGGTCCGGTTCCTTTCTA 59.102 52.381 15.97 3.04 32.37 2.10
2812 9877 4.250170 ACCCAGGTCAGGTCCGGT 62.250 66.667 0.00 0.00 28.99 5.28
2815 9880 3.330720 CCCACCCAGGTCAGGTCC 61.331 72.222 0.00 0.00 34.56 4.46
2824 9889 0.546747 TCTGGTACTTCCCCACCCAG 60.547 60.000 0.00 0.00 43.26 4.45
2839 9904 2.279741 CACGGTCAACATACCATCTGG 58.720 52.381 0.00 0.00 39.71 3.86
2846 9911 5.351465 AGATTTGATCACACGGTCAACATAC 59.649 40.000 0.00 0.00 34.34 2.39
2847 9912 5.487433 AGATTTGATCACACGGTCAACATA 58.513 37.500 0.00 0.00 34.34 2.29
2848 9913 4.326826 AGATTTGATCACACGGTCAACAT 58.673 39.130 0.00 0.00 34.34 2.71
2849 9914 3.738982 AGATTTGATCACACGGTCAACA 58.261 40.909 0.00 0.00 34.34 3.33
2850 9915 4.749245 AAGATTTGATCACACGGTCAAC 57.251 40.909 0.00 0.00 34.34 3.18
2851 9916 5.766150 AAAAGATTTGATCACACGGTCAA 57.234 34.783 0.00 0.00 32.86 3.18
2852 9917 5.766150 AAAAAGATTTGATCACACGGTCA 57.234 34.783 0.00 0.00 0.00 4.02
2872 9937 7.542824 GCCGTGCATTAAGGTTTAATCTAAAAA 59.457 33.333 0.00 0.00 0.00 1.94
2873 9938 7.030768 GCCGTGCATTAAGGTTTAATCTAAAA 58.969 34.615 0.00 0.00 0.00 1.52
2874 9939 6.404954 GGCCGTGCATTAAGGTTTAATCTAAA 60.405 38.462 0.00 0.00 0.00 1.85
2875 9940 5.066764 GGCCGTGCATTAAGGTTTAATCTAA 59.933 40.000 0.00 0.00 0.00 2.10
2876 9941 4.577283 GGCCGTGCATTAAGGTTTAATCTA 59.423 41.667 0.00 0.00 0.00 1.98
2877 9942 3.380320 GGCCGTGCATTAAGGTTTAATCT 59.620 43.478 0.00 0.00 0.00 2.40
2878 9943 3.702330 GGCCGTGCATTAAGGTTTAATC 58.298 45.455 0.00 0.00 0.00 1.75
2879 9944 2.098443 CGGCCGTGCATTAAGGTTTAAT 59.902 45.455 19.50 0.00 0.00 1.40
2880 9945 1.469308 CGGCCGTGCATTAAGGTTTAA 59.531 47.619 19.50 0.00 0.00 1.52
2881 9946 1.088306 CGGCCGTGCATTAAGGTTTA 58.912 50.000 19.50 0.00 0.00 2.01
2882 9947 0.606944 TCGGCCGTGCATTAAGGTTT 60.607 50.000 27.15 0.00 0.00 3.27
2883 9948 1.003112 TCGGCCGTGCATTAAGGTT 60.003 52.632 27.15 0.00 0.00 3.50
2884 9949 1.449601 CTCGGCCGTGCATTAAGGT 60.450 57.895 27.15 0.00 0.00 3.50
2885 9950 2.180204 CCTCGGCCGTGCATTAAGG 61.180 63.158 27.15 18.74 0.00 2.69
2886 9951 0.179094 TACCTCGGCCGTGCATTAAG 60.179 55.000 27.15 13.14 0.00 1.85
2887 9952 0.249676 TTACCTCGGCCGTGCATTAA 59.750 50.000 27.15 15.93 0.00 1.40
2888 9953 0.466543 ATTACCTCGGCCGTGCATTA 59.533 50.000 27.15 10.85 0.00 1.90
2889 9954 0.393808 AATTACCTCGGCCGTGCATT 60.394 50.000 27.15 16.67 0.00 3.56
2890 9955 0.393808 AAATTACCTCGGCCGTGCAT 60.394 50.000 27.15 15.63 0.00 3.96
2891 9956 0.606944 AAAATTACCTCGGCCGTGCA 60.607 50.000 27.15 10.37 0.00 4.57
2892 9957 1.371595 TAAAATTACCTCGGCCGTGC 58.628 50.000 27.15 0.00 0.00 5.34
2893 9958 3.181504 CCTTTAAAATTACCTCGGCCGTG 60.182 47.826 27.15 23.40 0.00 4.94
2894 9959 3.011818 CCTTTAAAATTACCTCGGCCGT 58.988 45.455 27.15 8.80 0.00 5.68
2895 9960 3.272581 TCCTTTAAAATTACCTCGGCCG 58.727 45.455 22.12 22.12 0.00 6.13
2896 9961 4.885325 TGATCCTTTAAAATTACCTCGGCC 59.115 41.667 0.00 0.00 0.00 6.13
2897 9962 5.820947 TCTGATCCTTTAAAATTACCTCGGC 59.179 40.000 0.00 0.00 0.00 5.54
2898 9963 7.934120 AGATCTGATCCTTTAAAATTACCTCGG 59.066 37.037 13.83 0.00 0.00 4.63
2899 9964 8.768955 CAGATCTGATCCTTTAAAATTACCTCG 58.231 37.037 18.34 0.00 0.00 4.63
2900 9965 9.620259 ACAGATCTGATCCTTTAAAATTACCTC 57.380 33.333 29.27 0.00 0.00 3.85
2910 9975 9.770097 CTGCTTAATTACAGATCTGATCCTTTA 57.230 33.333 29.27 14.65 35.90 1.85
2911 9976 7.228308 GCTGCTTAATTACAGATCTGATCCTTT 59.772 37.037 29.27 15.53 35.90 3.11
2912 9977 6.709846 GCTGCTTAATTACAGATCTGATCCTT 59.290 38.462 29.27 16.93 35.90 3.36
2913 9978 6.183361 TGCTGCTTAATTACAGATCTGATCCT 60.183 38.462 29.27 9.25 35.90 3.24
2914 9979 5.994054 TGCTGCTTAATTACAGATCTGATCC 59.006 40.000 29.27 8.42 35.90 3.36
2915 9980 7.351223 GTTGCTGCTTAATTACAGATCTGATC 58.649 38.462 29.27 9.65 35.90 2.92
2916 9981 6.018425 CGTTGCTGCTTAATTACAGATCTGAT 60.018 38.462 29.27 15.19 35.90 2.90
2917 9982 5.291858 CGTTGCTGCTTAATTACAGATCTGA 59.708 40.000 29.27 8.23 35.90 3.27
2918 9983 5.496387 CGTTGCTGCTTAATTACAGATCTG 58.504 41.667 21.37 21.37 35.90 2.90
2919 9984 4.572389 CCGTTGCTGCTTAATTACAGATCT 59.428 41.667 0.00 0.00 35.90 2.75
2920 9985 4.260784 CCCGTTGCTGCTTAATTACAGATC 60.261 45.833 0.00 0.00 35.90 2.75
2921 9986 3.627577 CCCGTTGCTGCTTAATTACAGAT 59.372 43.478 0.00 0.00 35.90 2.90
2922 9987 3.006940 CCCGTTGCTGCTTAATTACAGA 58.993 45.455 0.00 0.00 35.90 3.41
2923 9988 2.477863 GCCCGTTGCTGCTTAATTACAG 60.478 50.000 0.00 0.00 36.87 2.74
2924 9989 1.470890 GCCCGTTGCTGCTTAATTACA 59.529 47.619 0.00 0.00 36.87 2.41
2925 9990 2.188837 GCCCGTTGCTGCTTAATTAC 57.811 50.000 0.00 0.00 36.87 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.