Multiple sequence alignment - TraesCS1D01G037200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G037200 chr1D 100.000 4862 0 0 1 4862 17626901 17631762 0.000000e+00 8979.0
1 TraesCS1D01G037200 chr7D 97.141 2798 60 10 2078 4862 87997127 87999917 0.000000e+00 4706.0
2 TraesCS1D01G037200 chr7D 97.997 1298 19 4 782 2079 87995763 87997053 0.000000e+00 2246.0
3 TraesCS1D01G037200 chr7D 95.828 743 16 5 9 739 87995024 87995763 0.000000e+00 1186.0
4 TraesCS1D01G037200 chr7D 95.203 271 9 4 9 279 550984484 550984750 4.500000e-115 425.0
5 TraesCS1D01G037200 chr7D 95.238 42 2 0 4336 4377 39532182 39532141 3.140000e-07 67.6
6 TraesCS1D01G037200 chr7D 100.000 34 0 0 4336 4369 281083474 281083507 4.060000e-06 63.9
7 TraesCS1D01G037200 chr1A 94.172 2042 78 14 2078 4116 19892804 19894807 0.000000e+00 3073.0
8 TraesCS1D01G037200 chr1A 95.210 1169 50 3 911 2079 19891571 19892733 0.000000e+00 1844.0
9 TraesCS1D01G037200 chr1A 86.131 411 31 7 4477 4862 19895125 19895534 2.090000e-113 420.0
10 TraesCS1D01G037200 chr1A 84.151 265 12 14 494 744 19891322 19891570 3.790000e-56 230.0
11 TraesCS1D01G037200 chr1A 80.198 202 8 7 291 481 19891163 19891343 6.610000e-24 122.0
12 TraesCS1D01G037200 chr1B 94.632 1509 80 1 2595 4103 25810133 25811640 0.000000e+00 2337.0
13 TraesCS1D01G037200 chr1B 92.906 1170 78 4 911 2079 25808367 25809532 0.000000e+00 1696.0
14 TraesCS1D01G037200 chr1B 85.887 1410 168 15 2594 4001 25259997 25261377 0.000000e+00 1472.0
15 TraesCS1D01G037200 chr1B 82.153 1059 158 23 1028 2075 25258397 25259435 0.000000e+00 880.0
16 TraesCS1D01G037200 chr1B 88.187 491 34 2 4394 4860 25812181 25812671 9.140000e-157 564.0
17 TraesCS1D01G037200 chr1B 86.237 465 49 10 2078 2541 25809598 25810048 1.570000e-134 490.0
18 TraesCS1D01G037200 chr1B 94.834 271 10 4 9 279 565996418 565996684 2.090000e-113 420.0
19 TraesCS1D01G037200 chr1B 80.932 472 13 33 290 744 25807955 25808366 7.910000e-78 302.0
20 TraesCS1D01G037200 chr1B 85.657 251 31 5 2118 2367 25259528 25259774 4.830000e-65 259.0
21 TraesCS1D01G037200 chr2D 83.154 1211 194 5 2661 3866 572256151 572254946 0.000000e+00 1098.0
22 TraesCS1D01G037200 chr2D 95.203 271 10 2 9 279 60774577 60774844 4.500000e-115 425.0
23 TraesCS1D01G037200 chr2D 74.624 930 201 18 985 1901 482382545 482381638 1.280000e-100 377.0
24 TraesCS1D01G037200 chr2B 83.127 1209 198 3 2661 3866 687206412 687205207 0.000000e+00 1098.0
25 TraesCS1D01G037200 chr2B 81.138 1283 223 15 2594 3866 768059006 768057733 0.000000e+00 1011.0
26 TraesCS1D01G037200 chr2B 75.188 931 194 22 985 1901 566403453 566402546 5.860000e-109 405.0
27 TraesCS1D01G037200 chr5D 82.864 1208 199 5 2659 3862 442696118 442697321 0.000000e+00 1077.0
28 TraesCS1D01G037200 chr5D 95.620 274 9 3 9 282 468358797 468359067 2.080000e-118 436.0
29 TraesCS1D01G037200 chr5D 97.222 36 1 0 4336 4371 347364836 347364801 1.460000e-05 62.1
30 TraesCS1D01G037200 chr2A 81.935 1240 209 10 2628 3862 624966633 624965404 0.000000e+00 1035.0
31 TraesCS1D01G037200 chr4A 95.203 271 12 1 9 279 13066734 13067003 1.250000e-115 427.0
32 TraesCS1D01G037200 chr4A 97.222 36 0 1 4335 4369 590226001 590225966 5.260000e-05 60.2
33 TraesCS1D01G037200 chr5B 94.891 274 10 3 9 282 562963359 562963090 4.500000e-115 425.0
34 TraesCS1D01G037200 chr5B 94.485 272 10 4 9 279 595641929 595642196 9.740000e-112 414.0
35 TraesCS1D01G037200 chr5B 97.222 36 1 0 4336 4371 403781373 403781408 1.460000e-05 62.1
36 TraesCS1D01G037200 chr5A 94.465 271 9 5 9 279 615919350 615919614 3.500000e-111 412.0
37 TraesCS1D01G037200 chr5A 97.143 35 1 0 4337 4371 422064097 422064063 5.260000e-05 60.2
38 TraesCS1D01G037200 chr6B 93.182 44 3 0 1778 1821 460207383 460207426 1.130000e-06 65.8
39 TraesCS1D01G037200 chr4B 97.059 34 1 0 4336 4369 22846448 22846481 1.890000e-04 58.4
40 TraesCS1D01G037200 chr3D 94.595 37 2 0 4342 4378 307228866 307228830 1.890000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G037200 chr1D 17626901 17631762 4861 False 8979.000000 8979 100.000000 1 4862 1 chr1D.!!$F1 4861
1 TraesCS1D01G037200 chr7D 87995024 87999917 4893 False 2712.666667 4706 96.988667 9 4862 3 chr7D.!!$F3 4853
2 TraesCS1D01G037200 chr1A 19891163 19895534 4371 False 1137.800000 3073 87.972400 291 4862 5 chr1A.!!$F1 4571
3 TraesCS1D01G037200 chr1B 25807955 25812671 4716 False 1077.800000 2337 88.578800 290 4860 5 chr1B.!!$F3 4570
4 TraesCS1D01G037200 chr1B 25258397 25261377 2980 False 870.333333 1472 84.565667 1028 4001 3 chr1B.!!$F2 2973
5 TraesCS1D01G037200 chr2D 572254946 572256151 1205 True 1098.000000 1098 83.154000 2661 3866 1 chr2D.!!$R2 1205
6 TraesCS1D01G037200 chr2D 482381638 482382545 907 True 377.000000 377 74.624000 985 1901 1 chr2D.!!$R1 916
7 TraesCS1D01G037200 chr2B 687205207 687206412 1205 True 1098.000000 1098 83.127000 2661 3866 1 chr2B.!!$R2 1205
8 TraesCS1D01G037200 chr2B 768057733 768059006 1273 True 1011.000000 1011 81.138000 2594 3866 1 chr2B.!!$R3 1272
9 TraesCS1D01G037200 chr2B 566402546 566403453 907 True 405.000000 405 75.188000 985 1901 1 chr2B.!!$R1 916
10 TraesCS1D01G037200 chr5D 442696118 442697321 1203 False 1077.000000 1077 82.864000 2659 3862 1 chr5D.!!$F1 1203
11 TraesCS1D01G037200 chr2A 624965404 624966633 1229 True 1035.000000 1035 81.935000 2628 3862 1 chr2A.!!$R1 1234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.179045 CAGCTATTAGGGCCGCAGTT 60.179 55.000 0.00 0.00 0.00 3.16 F
748 775 0.464036 TCTCCACGCTTGTGTTGAGT 59.536 50.000 12.84 0.00 42.24 3.41 F
752 779 1.135972 CCACGCTTGTGTTGAGTATGC 60.136 52.381 0.00 0.00 42.24 3.14 F
773 800 1.349026 TGCTCAAGCCAGAGTTTAGCT 59.651 47.619 0.00 0.00 41.18 3.32 F
1875 1911 1.410153 CAGGGATACAAAGGCAATGCC 59.590 52.381 18.04 18.04 45.43 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 1678 0.865769 GTGATGAAGTTGAACGCCGT 59.134 50.000 0.0 0.0 0.0 5.68 R
2471 2597 1.620819 AGTCCACACACTGATCCTCAC 59.379 52.381 0.0 0.0 0.0 3.51 R
2696 2903 4.156556 CCCAAAATATAGTGATCATGGCGG 59.843 45.833 0.0 0.0 0.0 6.13 R
3667 3877 1.663135 GAGCTCATTCGCAACCTCTTC 59.337 52.381 9.4 0.0 0.0 2.87 R
4738 5373 4.130118 ACAATGAAGACGCTCTCTGTTTT 58.870 39.130 0.0 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 3.107601 TGGTGATGCTTAGCTTAGGACT 58.892 45.455 5.60 0.00 0.00 3.85
119 120 1.134340 ACTGGTGCTTCGGTTGTGTAA 60.134 47.619 0.00 0.00 0.00 2.41
146 147 1.064314 TGTTTGTGGTGGGTGTAGCTT 60.064 47.619 0.00 0.00 0.00 3.74
169 170 1.447643 CAGCTATTAGGGCCGCAGT 59.552 57.895 0.00 0.00 0.00 4.40
170 171 0.179045 CAGCTATTAGGGCCGCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
221 222 4.163441 TCTTCACCATGTTGTTCTTCCA 57.837 40.909 0.00 0.00 0.00 3.53
258 259 6.534475 AATCTGAATCAAGCCAGCAATTTA 57.466 33.333 0.00 0.00 0.00 1.40
275 276 8.706035 CAGCAATTTACTGGATCTTTCAAAAAG 58.294 33.333 0.00 0.00 0.00 2.27
288 289 7.123355 TCTTTCAAAAAGAAACATGGGTGAT 57.877 32.000 0.00 0.00 41.17 3.06
481 493 2.093128 ACTTTTTGACCAGTCGACCTGT 60.093 45.455 13.01 9.78 39.74 4.00
564 579 3.121030 GTGTGCGCCTACCTGCTG 61.121 66.667 4.18 0.00 0.00 4.41
635 650 5.182001 AGCAAGCACAAATTAATTCTCGAGT 59.818 36.000 13.13 0.00 0.00 4.18
640 655 5.251081 CACAAATTAATTCTCGAGTGAGCG 58.749 41.667 13.13 0.00 42.26 5.03
744 771 2.146342 CATCTTCTCCACGCTTGTGTT 58.854 47.619 0.00 0.00 42.24 3.32
745 772 1.581934 TCTTCTCCACGCTTGTGTTG 58.418 50.000 0.00 0.00 42.24 3.33
746 773 1.138069 TCTTCTCCACGCTTGTGTTGA 59.862 47.619 0.00 0.00 42.24 3.18
747 774 1.528586 CTTCTCCACGCTTGTGTTGAG 59.471 52.381 8.53 8.53 42.24 3.02
748 775 0.464036 TCTCCACGCTTGTGTTGAGT 59.536 50.000 12.84 0.00 42.24 3.41
749 776 1.684450 TCTCCACGCTTGTGTTGAGTA 59.316 47.619 12.84 1.50 42.24 2.59
750 777 2.299013 TCTCCACGCTTGTGTTGAGTAT 59.701 45.455 12.84 0.00 42.24 2.12
751 778 2.412870 TCCACGCTTGTGTTGAGTATG 58.587 47.619 0.00 0.00 42.24 2.39
752 779 1.135972 CCACGCTTGTGTTGAGTATGC 60.136 52.381 0.00 0.00 42.24 3.14
753 780 1.800586 CACGCTTGTGTTGAGTATGCT 59.199 47.619 0.00 0.00 38.84 3.79
754 781 1.800586 ACGCTTGTGTTGAGTATGCTG 59.199 47.619 0.00 0.00 0.00 4.41
755 782 1.464687 CGCTTGTGTTGAGTATGCTGC 60.465 52.381 0.00 0.00 0.00 5.25
756 783 1.808945 GCTTGTGTTGAGTATGCTGCT 59.191 47.619 0.00 0.00 0.00 4.24
757 784 2.159599 GCTTGTGTTGAGTATGCTGCTC 60.160 50.000 0.00 0.00 0.00 4.26
758 785 2.837532 TGTGTTGAGTATGCTGCTCA 57.162 45.000 0.00 0.00 40.76 4.26
759 786 3.124578 TGTGTTGAGTATGCTGCTCAA 57.875 42.857 11.96 11.96 46.78 3.02
772 799 1.736681 CTGCTCAAGCCAGAGTTTAGC 59.263 52.381 0.00 0.00 41.18 3.09
773 800 1.349026 TGCTCAAGCCAGAGTTTAGCT 59.651 47.619 0.00 0.00 41.18 3.32
774 801 2.567169 TGCTCAAGCCAGAGTTTAGCTA 59.433 45.455 0.00 0.00 41.18 3.32
775 802 3.198635 TGCTCAAGCCAGAGTTTAGCTAT 59.801 43.478 0.00 0.00 41.18 2.97
776 803 3.559242 GCTCAAGCCAGAGTTTAGCTATG 59.441 47.826 0.00 0.00 37.94 2.23
777 804 4.764172 CTCAAGCCAGAGTTTAGCTATGT 58.236 43.478 0.00 0.00 35.30 2.29
778 805 5.165961 TCAAGCCAGAGTTTAGCTATGTT 57.834 39.130 0.00 0.00 35.30 2.71
779 806 5.560724 TCAAGCCAGAGTTTAGCTATGTTT 58.439 37.500 0.00 0.00 35.30 2.83
780 807 5.412594 TCAAGCCAGAGTTTAGCTATGTTTG 59.587 40.000 0.00 0.00 35.30 2.93
781 808 4.911390 AGCCAGAGTTTAGCTATGTTTGT 58.089 39.130 0.00 0.00 34.78 2.83
802 829 5.258841 TGTCATGAGATCCATTCTGCTTTT 58.741 37.500 0.00 0.00 33.74 2.27
807 834 5.319453 TGAGATCCATTCTGCTTTTCTTGT 58.681 37.500 0.00 0.00 33.74 3.16
809 836 4.394300 AGATCCATTCTGCTTTTCTTGTCG 59.606 41.667 0.00 0.00 31.79 4.35
819 846 4.095782 TGCTTTTCTTGTCGTGCTTTACTT 59.904 37.500 0.00 0.00 0.00 2.24
1364 1394 1.749258 GCCAAAACGGAGGGCCTAG 60.749 63.158 5.73 6.47 41.90 3.02
1648 1678 4.100084 CGGTGCTCATGGAGGCCA 62.100 66.667 5.01 0.00 38.19 5.36
1875 1911 1.410153 CAGGGATACAAAGGCAATGCC 59.590 52.381 18.04 18.04 45.43 4.40
1913 1949 8.174757 TGGATGCCAAGGTACTATAATCTACTA 58.825 37.037 0.00 0.00 38.49 1.82
1914 1950 8.468399 GGATGCCAAGGTACTATAATCTACTAC 58.532 40.741 0.00 0.00 38.49 2.73
1915 1951 9.245481 GATGCCAAGGTACTATAATCTACTACT 57.755 37.037 0.00 0.00 38.49 2.57
1988 2036 7.847487 TCTATCTTTGACAAGTTTACAACACG 58.153 34.615 0.00 0.00 0.00 4.49
2558 2701 9.418045 CCATTCACTAACCGTAAATTTTGAAAT 57.582 29.630 0.00 0.00 0.00 2.17
2597 2763 1.594331 AGCGAAAGAACACCAACTCC 58.406 50.000 0.00 0.00 0.00 3.85
2696 2903 6.670695 AGGATTATTTGGGGCAATCATTAC 57.329 37.500 0.00 0.00 31.61 1.89
3236 3446 2.769209 ACACTCTTATGCATCTCCCCT 58.231 47.619 0.19 0.00 0.00 4.79
3667 3877 3.746949 GACAGCAGGCCCTCGATGG 62.747 68.421 0.00 1.78 0.00 3.51
4378 4844 7.005296 TGGATCAGAGGGAGTATAAGTCTTAC 58.995 42.308 0.00 0.00 0.00 2.34
4738 5373 2.036217 ACGGTAACAGATCCACGAAACA 59.964 45.455 0.00 0.00 0.00 2.83
4803 5439 2.741878 GCAGCTACTTTATCCGAAGCCA 60.742 50.000 0.00 0.00 33.63 4.75
4804 5440 3.733337 CAGCTACTTTATCCGAAGCCAT 58.267 45.455 0.00 0.00 33.63 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.124921 CGCCAACGCAAGGGGTAG 61.125 66.667 0.00 0.00 46.39 3.18
1 2 3.599285 CTCGCCAACGCAAGGGGTA 62.599 63.158 5.56 0.00 46.39 3.69
5 6 4.697756 TCCCTCGCCAACGCAAGG 62.698 66.667 0.00 0.00 46.39 3.61
7 8 2.668212 CTTCCCTCGCCAACGCAA 60.668 61.111 0.00 0.00 39.84 4.85
101 102 2.147958 GATTACACAACCGAAGCACCA 58.852 47.619 0.00 0.00 0.00 4.17
119 120 2.364970 CACCCACCACAAACAACATGAT 59.635 45.455 0.00 0.00 0.00 2.45
146 147 1.758440 CGGCCCTAATAGCTGCAGGA 61.758 60.000 17.12 0.00 0.00 3.86
258 259 7.212274 CCATGTTTCTTTTTGAAAGATCCAGT 58.788 34.615 4.16 0.00 43.84 4.00
271 272 7.173047 GTGCATTTTATCACCCATGTTTCTTTT 59.827 33.333 0.00 0.00 0.00 2.27
275 276 4.562394 CGTGCATTTTATCACCCATGTTTC 59.438 41.667 0.00 0.00 0.00 2.78
288 289 7.168972 CCAAAACTTTGAGATTCGTGCATTTTA 59.831 33.333 3.72 0.00 40.55 1.52
481 493 2.083774 CAAAAAGTCTATGGCCAGCGA 58.916 47.619 13.05 7.18 0.00 4.93
578 593 4.083643 CCTCTGTGCTAATTGTGTTGTGAG 60.084 45.833 0.00 0.00 0.00 3.51
635 650 4.488992 GCTGCTCTCTCGCGCTCA 62.489 66.667 5.56 0.00 0.00 4.26
640 655 2.412937 GAGGAGCTGCTCTCTCGC 59.587 66.667 26.40 11.66 41.60 5.03
752 779 1.736681 GCTAAACTCTGGCTTGAGCAG 59.263 52.381 5.24 1.33 44.36 4.24
753 780 1.349026 AGCTAAACTCTGGCTTGAGCA 59.651 47.619 5.24 0.00 44.36 4.26
754 781 2.106477 AGCTAAACTCTGGCTTGAGC 57.894 50.000 7.74 0.00 37.58 4.26
755 782 4.764172 ACATAGCTAAACTCTGGCTTGAG 58.236 43.478 0.00 6.55 39.78 3.02
756 783 4.826274 ACATAGCTAAACTCTGGCTTGA 57.174 40.909 0.00 0.00 37.50 3.02
757 784 5.182001 ACAAACATAGCTAAACTCTGGCTTG 59.818 40.000 0.00 2.70 37.50 4.01
758 785 5.316987 ACAAACATAGCTAAACTCTGGCTT 58.683 37.500 0.00 0.00 37.50 4.35
759 786 4.911390 ACAAACATAGCTAAACTCTGGCT 58.089 39.130 0.00 0.00 39.74 4.75
760 787 4.695455 TGACAAACATAGCTAAACTCTGGC 59.305 41.667 0.00 0.00 0.00 4.85
761 788 6.595326 TCATGACAAACATAGCTAAACTCTGG 59.405 38.462 0.00 0.00 37.46 3.86
762 789 7.547019 TCTCATGACAAACATAGCTAAACTCTG 59.453 37.037 0.00 0.00 37.46 3.35
763 790 7.615403 TCTCATGACAAACATAGCTAAACTCT 58.385 34.615 0.00 0.00 37.46 3.24
764 791 7.834068 TCTCATGACAAACATAGCTAAACTC 57.166 36.000 0.00 0.00 37.46 3.01
765 792 7.497249 GGATCTCATGACAAACATAGCTAAACT 59.503 37.037 0.00 0.00 37.46 2.66
766 793 7.280876 TGGATCTCATGACAAACATAGCTAAAC 59.719 37.037 0.00 0.00 37.46 2.01
767 794 7.337938 TGGATCTCATGACAAACATAGCTAAA 58.662 34.615 0.00 0.00 37.46 1.85
768 795 6.888105 TGGATCTCATGACAAACATAGCTAA 58.112 36.000 0.00 0.00 37.46 3.09
769 796 6.484364 TGGATCTCATGACAAACATAGCTA 57.516 37.500 0.00 0.00 37.46 3.32
770 797 5.363562 TGGATCTCATGACAAACATAGCT 57.636 39.130 0.00 0.00 37.46 3.32
771 798 6.485984 AGAATGGATCTCATGACAAACATAGC 59.514 38.462 0.00 0.00 37.07 2.97
772 799 7.520131 GCAGAATGGATCTCATGACAAACATAG 60.520 40.741 0.00 0.00 35.73 2.23
773 800 6.261603 GCAGAATGGATCTCATGACAAACATA 59.738 38.462 0.00 0.00 35.73 2.29
774 801 5.067413 GCAGAATGGATCTCATGACAAACAT 59.933 40.000 0.00 0.00 35.73 2.71
775 802 4.397103 GCAGAATGGATCTCATGACAAACA 59.603 41.667 0.00 0.00 35.73 2.83
776 803 4.639310 AGCAGAATGGATCTCATGACAAAC 59.361 41.667 0.00 0.00 35.73 2.93
777 804 4.851843 AGCAGAATGGATCTCATGACAAA 58.148 39.130 0.00 0.00 35.73 2.83
778 805 4.498894 AGCAGAATGGATCTCATGACAA 57.501 40.909 0.00 0.00 35.73 3.18
779 806 4.498894 AAGCAGAATGGATCTCATGACA 57.501 40.909 0.00 0.00 35.73 3.58
780 807 5.589452 AGAAAAGCAGAATGGATCTCATGAC 59.411 40.000 0.00 0.00 35.73 3.06
781 808 5.752650 AGAAAAGCAGAATGGATCTCATGA 58.247 37.500 0.00 0.00 35.73 3.07
802 829 4.185394 TCACAAAGTAAAGCACGACAAGA 58.815 39.130 0.00 0.00 0.00 3.02
807 834 4.378356 GCATGATCACAAAGTAAAGCACGA 60.378 41.667 0.00 0.00 0.00 4.35
809 836 4.797471 TGCATGATCACAAAGTAAAGCAC 58.203 39.130 0.00 0.00 0.00 4.40
819 846 3.189910 GTGAGCTTCTTGCATGATCACAA 59.810 43.478 21.13 0.00 45.94 3.33
1350 1377 2.368011 GGAGCTAGGCCCTCCGTTT 61.368 63.158 10.40 0.00 39.50 3.60
1648 1678 0.865769 GTGATGAAGTTGAACGCCGT 59.134 50.000 0.00 0.00 0.00 5.68
2054 2102 6.313905 CGACCAAGTTCATAGAAAACTAGCAT 59.686 38.462 0.00 0.00 35.96 3.79
2190 2316 5.106436 TGTTACTACATTCGTCGACATCTGT 60.106 40.000 17.16 16.11 0.00 3.41
2396 2522 9.377312 CAAAAGGAAAACTCAATGGACTTAAAA 57.623 29.630 0.00 0.00 0.00 1.52
2471 2597 1.620819 AGTCCACACACTGATCCTCAC 59.379 52.381 0.00 0.00 0.00 3.51
2597 2763 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
2696 2903 4.156556 CCCAAAATATAGTGATCATGGCGG 59.843 45.833 0.00 0.00 0.00 6.13
3667 3877 1.663135 GAGCTCATTCGCAACCTCTTC 59.337 52.381 9.40 0.00 0.00 2.87
3907 4120 7.824672 AGAGAAAAATGTATGGAAAGAAGCTG 58.175 34.615 0.00 0.00 0.00 4.24
4738 5373 4.130118 ACAATGAAGACGCTCTCTGTTTT 58.870 39.130 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.