Multiple sequence alignment - TraesCS1D01G036900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G036900 chr1D 100.000 2900 0 0 1 2900 17238668 17235769 0.000000e+00 5356.0
1 TraesCS1D01G036900 chr1D 85.528 1997 166 74 159 2071 17247165 17249122 0.000000e+00 1973.0
2 TraesCS1D01G036900 chr1D 88.235 170 13 4 2589 2757 84712222 84712059 2.280000e-46 196.0
3 TraesCS1D01G036900 chr1B 89.807 1658 111 32 781 2424 25114169 25112556 0.000000e+00 2073.0
4 TraesCS1D01G036900 chr1B 82.008 478 42 17 107 558 25115562 25115103 1.640000e-97 366.0
5 TraesCS1D01G036900 chr1B 91.373 255 14 3 269 519 25114530 25114280 2.770000e-90 342.0
6 TraesCS1D01G036900 chr1B 89.759 166 10 2 2590 2754 595460120 595460279 3.790000e-49 206.0
7 TraesCS1D01G036900 chr1B 95.238 126 6 0 107 232 25114663 25114538 1.760000e-47 200.0
8 TraesCS1D01G036900 chr1B 100.000 43 0 0 576 618 25114270 25114228 2.400000e-11 80.5
9 TraesCS1D01G036900 chr1A 88.081 1636 110 39 804 2411 19063539 19061961 0.000000e+00 1862.0
10 TraesCS1D01G036900 chr1A 85.798 514 29 13 144 633 19085301 19084808 3.340000e-139 505.0
11 TraesCS1D01G036900 chr1A 86.686 353 16 7 205 547 19064175 19063844 2.120000e-96 363.0
12 TraesCS1D01G036900 chr1A 90.335 269 19 3 129 397 19550668 19550929 2.140000e-91 346.0
13 TraesCS1D01G036900 chr1A 81.592 402 52 15 135 533 19064767 19065149 2.170000e-81 313.0
14 TraesCS1D01G036900 chr1A 82.687 335 33 15 1694 2014 19134262 19134585 1.020000e-69 274.0
15 TraesCS1D01G036900 chr1A 88.000 175 14 2 2589 2762 11628171 11628339 1.760000e-47 200.0
16 TraesCS1D01G036900 chr1A 88.793 116 8 4 784 896 19065397 19065510 1.400000e-28 137.0
17 TraesCS1D01G036900 chr3A 78.830 359 56 13 1587 1944 639714604 639714943 1.050000e-54 224.0
18 TraesCS1D01G036900 chr5A 89.349 169 11 5 2590 2757 505768810 505768648 3.790000e-49 206.0
19 TraesCS1D01G036900 chr5A 75.579 475 83 19 1475 1944 124943525 124943971 1.360000e-48 204.0
20 TraesCS1D01G036900 chr5A 84.138 145 19 2 1218 1362 524016354 524016494 1.400000e-28 137.0
21 TraesCS1D01G036900 chr5D 88.136 177 14 2 2583 2758 382083759 382083929 1.360000e-48 204.0
22 TraesCS1D01G036900 chr5D 88.235 170 13 2 2589 2757 449673216 449673053 2.280000e-46 196.0
23 TraesCS1D01G036900 chr2A 86.082 194 19 4 2576 2768 275929410 275929224 4.900000e-48 202.0
24 TraesCS1D01G036900 chr2A 83.562 73 12 0 2242 2314 1513866 1513794 5.190000e-08 69.4
25 TraesCS1D01G036900 chr7D 87.571 177 14 3 2590 2764 525721128 525720958 6.340000e-47 198.0
26 TraesCS1D01G036900 chr6D 88.024 167 17 3 2590 2754 396874161 396874326 8.200000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G036900 chr1D 17235769 17238668 2899 True 5356.0 5356 100.0000 1 2900 1 chr1D.!!$R1 2899
1 TraesCS1D01G036900 chr1D 17247165 17249122 1957 False 1973.0 1973 85.5280 159 2071 1 chr1D.!!$F1 1912
2 TraesCS1D01G036900 chr1B 25112556 25115562 3006 True 612.3 2073 91.6852 107 2424 5 chr1B.!!$R1 2317
3 TraesCS1D01G036900 chr1A 19061961 19064175 2214 True 1112.5 1862 87.3835 205 2411 2 chr1A.!!$R2 2206
4 TraesCS1D01G036900 chr1A 19064767 19065510 743 False 225.0 313 85.1925 135 896 2 chr1A.!!$F4 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 1542 0.747255 GAGATGACCCAGCTCGCTTA 59.253 55.0 0.0 0.0 37.16 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2536 3716 0.029035 AACGGCTAGCGATCGTACTG 59.971 55.0 17.81 10.93 36.01 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.871096 TTTTGGGGTTATGCTCGTCT 57.129 45.000 0.00 0.00 0.00 4.18
43 44 2.871096 TTTGGGGTTATGCTCGTCTT 57.129 45.000 0.00 0.00 0.00 3.01
44 45 3.985019 TTTGGGGTTATGCTCGTCTTA 57.015 42.857 0.00 0.00 0.00 2.10
45 46 3.985019 TTGGGGTTATGCTCGTCTTAA 57.015 42.857 0.00 0.00 0.00 1.85
46 47 3.536956 TGGGGTTATGCTCGTCTTAAG 57.463 47.619 0.00 0.00 0.00 1.85
47 48 2.210961 GGGGTTATGCTCGTCTTAAGC 58.789 52.381 0.00 0.00 40.26 3.09
48 49 2.210961 GGGTTATGCTCGTCTTAAGCC 58.789 52.381 0.00 13.66 42.12 4.35
49 50 2.158943 GGGTTATGCTCGTCTTAAGCCT 60.159 50.000 17.83 2.95 43.77 4.58
50 51 3.069158 GGGTTATGCTCGTCTTAAGCCTA 59.931 47.826 17.83 2.21 43.77 3.93
51 52 4.442472 GGGTTATGCTCGTCTTAAGCCTAA 60.442 45.833 17.83 6.79 43.77 2.69
52 53 4.745620 GGTTATGCTCGTCTTAAGCCTAAG 59.254 45.833 0.00 0.00 39.05 2.18
53 54 2.295253 TGCTCGTCTTAAGCCTAAGC 57.705 50.000 0.00 5.00 39.05 3.09
78 79 5.836024 TTTTAGAGGGTCATGTGGTTACT 57.164 39.130 0.00 0.00 0.00 2.24
79 80 4.819105 TTAGAGGGTCATGTGGTTACTG 57.181 45.455 0.00 0.00 0.00 2.74
80 81 2.621070 AGAGGGTCATGTGGTTACTGT 58.379 47.619 0.00 0.00 0.00 3.55
81 82 2.303022 AGAGGGTCATGTGGTTACTGTG 59.697 50.000 0.00 0.00 0.00 3.66
82 83 2.038557 GAGGGTCATGTGGTTACTGTGT 59.961 50.000 0.00 0.00 0.00 3.72
83 84 2.441750 AGGGTCATGTGGTTACTGTGTT 59.558 45.455 0.00 0.00 0.00 3.32
84 85 3.117663 AGGGTCATGTGGTTACTGTGTTT 60.118 43.478 0.00 0.00 0.00 2.83
85 86 3.634910 GGGTCATGTGGTTACTGTGTTTT 59.365 43.478 0.00 0.00 0.00 2.43
86 87 4.098807 GGGTCATGTGGTTACTGTGTTTTT 59.901 41.667 0.00 0.00 0.00 1.94
105 106 4.644103 TTTTTAGCGGCTACTACTCGAT 57.356 40.909 9.68 0.00 0.00 3.59
111 112 3.041492 GCGGCTACTACTCGATTTACAC 58.959 50.000 0.00 0.00 0.00 2.90
117 118 6.810182 GGCTACTACTCGATTTACACAAGAAA 59.190 38.462 0.00 0.00 0.00 2.52
119 120 8.533153 GCTACTACTCGATTTACACAAGAAATC 58.467 37.037 0.00 0.00 39.10 2.17
154 155 4.759183 GCAAATAGGGAGCTTAGATCCAAG 59.241 45.833 18.73 0.00 38.70 3.61
198 199 3.008157 TGTCCTATTCGGGCAACTTAACA 59.992 43.478 0.00 0.00 46.53 2.41
202 203 6.316890 GTCCTATTCGGGCAACTTAACATTAA 59.683 38.462 0.00 0.00 37.34 1.40
229 230 6.780457 ATCCATGAACAGAAAATTGGGTAG 57.220 37.500 0.00 0.00 0.00 3.18
230 231 5.640147 TCCATGAACAGAAAATTGGGTAGT 58.360 37.500 0.00 0.00 0.00 2.73
231 232 6.785076 TCCATGAACAGAAAATTGGGTAGTA 58.215 36.000 0.00 0.00 0.00 1.82
421 446 1.672356 CACCGGCCTTCTCCAACAG 60.672 63.158 0.00 0.00 0.00 3.16
438 464 4.935808 CCAACAGTAACTTAGTCCATGGAC 59.064 45.833 33.72 33.72 44.86 4.02
510 1412 1.194218 GGGTTAAGCACATGGCCAAT 58.806 50.000 10.96 0.00 46.50 3.16
529 1431 7.233757 TGGCCAATATAACTTAGTTTTGTTGGT 59.766 33.333 28.93 1.23 42.60 3.67
547 1449 3.990369 TGGTGGTATGACCTAGCTAAGT 58.010 45.455 0.00 0.00 39.58 2.24
548 1450 3.958798 TGGTGGTATGACCTAGCTAAGTC 59.041 47.826 14.51 14.51 39.58 3.01
549 1451 3.004524 GGTGGTATGACCTAGCTAAGTCG 59.995 52.174 15.96 0.00 39.58 4.18
568 1470 5.134978 GTCGTGTACGGCTAATTTTAAGG 57.865 43.478 1.22 0.00 41.36 2.69
627 1542 0.747255 GAGATGACCCAGCTCGCTTA 59.253 55.000 0.00 0.00 37.16 3.09
628 1543 0.749649 AGATGACCCAGCTCGCTTAG 59.250 55.000 0.00 0.00 0.00 2.18
648 1581 1.793258 CTAGCTGATCCATCTTGCGG 58.207 55.000 0.00 0.00 34.19 5.69
657 1590 1.277842 TCCATCTTGCGGCTAGAACAA 59.722 47.619 17.50 3.98 0.00 2.83
664 1597 2.346803 TGCGGCTAGAACAATTCACTC 58.653 47.619 0.00 0.00 0.00 3.51
693 1626 8.547894 TCGATTTCCGAGTGATTAATTAACATG 58.452 33.333 0.00 0.00 43.23 3.21
701 1634 7.747799 CGAGTGATTAATTAACATGCATGGATC 59.252 37.037 29.41 18.39 0.00 3.36
710 1643 5.428496 AACATGCATGGATCAATCGTAAG 57.572 39.130 29.41 0.42 0.00 2.34
758 1723 3.944015 CAGGCTTAATTAGTTGAGCAGCT 59.056 43.478 15.15 0.00 45.79 4.24
761 1726 6.261826 CAGGCTTAATTAGTTGAGCAGCTAAT 59.738 38.462 15.15 12.09 45.79 1.73
763 1728 7.993183 AGGCTTAATTAGTTGAGCAGCTAATTA 59.007 33.333 23.70 23.70 46.10 1.40
778 1862 6.327934 CAGCTAATTAACACCACGTACTACT 58.672 40.000 0.00 0.00 0.00 2.57
791 1875 2.557924 CGTACTACTGTACCACCCAACA 59.442 50.000 0.00 0.00 44.48 3.33
792 1876 3.005684 CGTACTACTGTACCACCCAACAA 59.994 47.826 0.00 0.00 44.48 2.83
793 1877 3.764237 ACTACTGTACCACCCAACAAG 57.236 47.619 0.00 0.00 0.00 3.16
997 2159 2.795470 GCCCGCTCTATAAGAAACGAAG 59.205 50.000 0.00 0.00 0.00 3.79
999 2161 3.491104 CCCGCTCTATAAGAAACGAAGCT 60.491 47.826 0.00 0.00 0.00 3.74
1026 2188 5.619757 GCATGCAAACAAATCACTAGTAGCA 60.620 40.000 14.21 0.00 33.20 3.49
1027 2189 5.611796 TGCAAACAAATCACTAGTAGCAG 57.388 39.130 0.00 0.00 0.00 4.24
1028 2190 4.083324 TGCAAACAAATCACTAGTAGCAGC 60.083 41.667 0.00 0.00 0.00 5.25
1029 2191 4.154918 GCAAACAAATCACTAGTAGCAGCT 59.845 41.667 0.00 0.00 0.00 4.24
1030 2192 5.351465 GCAAACAAATCACTAGTAGCAGCTA 59.649 40.000 0.00 0.00 0.00 3.32
1031 2193 6.037610 GCAAACAAATCACTAGTAGCAGCTAT 59.962 38.462 5.14 0.00 0.00 2.97
1114 2282 2.182791 CGTCTCCGCTGCTCATGT 59.817 61.111 0.00 0.00 0.00 3.21
1677 2845 3.501458 GACCATCTACGGGCTCGGC 62.501 68.421 12.42 0.00 41.39 5.54
1830 2998 1.281287 GTGTACCCCTTCTTCTTCCCC 59.719 57.143 0.00 0.00 0.00 4.81
1917 3085 2.108168 TGATGGGTGGAGTACAGCTAC 58.892 52.381 4.19 0.00 46.60 3.58
1918 3086 1.067212 GATGGGTGGAGTACAGCTACG 59.933 57.143 4.19 0.00 46.60 3.51
1919 3087 0.251474 TGGGTGGAGTACAGCTACGT 60.251 55.000 4.19 0.00 46.60 3.57
1920 3088 1.004628 TGGGTGGAGTACAGCTACGTA 59.995 52.381 4.19 0.00 46.60 3.57
1940 3108 5.747951 GTAGTCAACTACGGTGCTAGTAT 57.252 43.478 4.66 0.00 39.36 2.12
1942 3110 4.525024 AGTCAACTACGGTGCTAGTATCT 58.475 43.478 0.00 0.00 0.00 1.98
1943 3111 5.678583 AGTCAACTACGGTGCTAGTATCTA 58.321 41.667 0.00 0.00 0.00 1.98
1944 3112 5.526846 AGTCAACTACGGTGCTAGTATCTAC 59.473 44.000 0.00 0.00 0.00 2.59
1945 3113 5.526846 GTCAACTACGGTGCTAGTATCTACT 59.473 44.000 0.00 0.00 40.24 2.57
1946 3114 5.526479 TCAACTACGGTGCTAGTATCTACTG 59.474 44.000 0.06 0.00 37.10 2.74
1947 3115 5.033589 ACTACGGTGCTAGTATCTACTGT 57.966 43.478 0.06 0.00 37.10 3.55
1948 3116 6.166984 ACTACGGTGCTAGTATCTACTGTA 57.833 41.667 0.06 0.00 37.10 2.74
1949 3117 5.988561 ACTACGGTGCTAGTATCTACTGTAC 59.011 44.000 0.06 0.00 37.10 2.90
1950 3118 3.806521 ACGGTGCTAGTATCTACTGTACG 59.193 47.826 0.06 0.00 37.10 3.67
1951 3119 3.806521 CGGTGCTAGTATCTACTGTACGT 59.193 47.826 0.00 0.00 37.10 3.57
2037 3206 2.402564 AGCTAGCCTAGAATCCAAGCA 58.597 47.619 12.13 0.00 0.00 3.91
2043 3212 1.839994 CCTAGAATCCAAGCAGGGTCA 59.160 52.381 0.00 0.00 38.24 4.02
2052 3225 6.625532 ATCCAAGCAGGGTCAAAATAATTT 57.374 33.333 0.00 0.00 38.24 1.82
2080 3253 8.631695 CGTTAAGTGCAAAATAATAAGCGAAAA 58.368 29.630 0.00 0.00 0.00 2.29
2089 3262 9.353999 CAAAATAATAAGCGAAAAACTAGCCTT 57.646 29.630 0.00 0.00 0.00 4.35
2095 3268 3.003378 AGCGAAAAACTAGCCTTGTGTTC 59.997 43.478 0.00 0.00 0.00 3.18
2096 3269 3.852205 GCGAAAAACTAGCCTTGTGTTCC 60.852 47.826 0.00 0.00 0.00 3.62
2098 3271 4.319549 CGAAAAACTAGCCTTGTGTTCCTC 60.320 45.833 0.00 0.00 0.00 3.71
2099 3272 2.457366 AACTAGCCTTGTGTTCCTCG 57.543 50.000 0.00 0.00 0.00 4.63
2100 3273 0.037232 ACTAGCCTTGTGTTCCTCGC 60.037 55.000 0.00 0.00 0.00 5.03
2139 3315 4.846779 AATACATTTCGTGCAACAACCT 57.153 36.364 0.00 0.00 35.74 3.50
2140 3316 5.950758 AATACATTTCGTGCAACAACCTA 57.049 34.783 0.00 0.00 35.74 3.08
2143 3319 3.190535 ACATTTCGTGCAACAACCTATCC 59.809 43.478 0.00 0.00 35.74 2.59
2144 3320 2.851263 TTCGTGCAACAACCTATCCT 57.149 45.000 0.00 0.00 35.74 3.24
2145 3321 2.851263 TCGTGCAACAACCTATCCTT 57.149 45.000 0.00 0.00 35.74 3.36
2146 3322 2.422597 TCGTGCAACAACCTATCCTTG 58.577 47.619 0.00 0.00 35.74 3.61
2180 3356 4.759516 ATTTGCAAAACTACTACCCACG 57.240 40.909 17.19 0.00 0.00 4.94
2215 3393 1.977854 TCATACTGCCTGTGGTGACTT 59.022 47.619 0.00 0.00 0.00 3.01
2216 3394 2.028112 TCATACTGCCTGTGGTGACTTC 60.028 50.000 0.00 0.00 0.00 3.01
2217 3395 0.317160 TACTGCCTGTGGTGACTTCG 59.683 55.000 0.00 0.00 0.00 3.79
2218 3396 1.069765 CTGCCTGTGGTGACTTCGT 59.930 57.895 0.00 0.00 0.00 3.85
2219 3397 0.946221 CTGCCTGTGGTGACTTCGTC 60.946 60.000 0.00 0.00 0.00 4.20
2220 3398 1.069090 GCCTGTGGTGACTTCGTCA 59.931 57.895 0.00 0.00 40.50 4.35
2221 3399 0.531974 GCCTGTGGTGACTTCGTCAA 60.532 55.000 0.00 0.00 44.49 3.18
2226 3404 4.494484 CTGTGGTGACTTCGTCAATCATA 58.506 43.478 0.00 0.00 44.49 2.15
2231 3409 6.092122 GTGGTGACTTCGTCAATCATAAATCA 59.908 38.462 0.00 0.00 44.49 2.57
2232 3410 6.823182 TGGTGACTTCGTCAATCATAAATCAT 59.177 34.615 0.00 0.00 44.49 2.45
2235 3413 9.855361 GTGACTTCGTCAATCATAAATCATAAG 57.145 33.333 0.00 0.00 44.49 1.73
2239 3417 9.539139 CTTCGTCAATCATAAATCATAAGATGC 57.461 33.333 0.00 0.00 33.90 3.91
2248 3426 3.988976 ATCATAAGATGCTATGCCGGT 57.011 42.857 1.90 0.00 31.91 5.28
2250 3428 4.882842 TCATAAGATGCTATGCCGGTTA 57.117 40.909 1.90 0.00 30.61 2.85
2259 3437 2.859032 GCTATGCCGGTTAAGTCTCTCG 60.859 54.545 1.90 0.00 0.00 4.04
2260 3438 1.471119 ATGCCGGTTAAGTCTCTCGA 58.529 50.000 1.90 0.00 0.00 4.04
2261 3439 1.250328 TGCCGGTTAAGTCTCTCGAA 58.750 50.000 1.90 0.00 0.00 3.71
2263 3441 1.469423 GCCGGTTAAGTCTCTCGAAGG 60.469 57.143 1.90 0.00 0.00 3.46
2264 3442 1.817447 CCGGTTAAGTCTCTCGAAGGT 59.183 52.381 0.00 0.00 0.00 3.50
2265 3443 2.415625 CCGGTTAAGTCTCTCGAAGGTG 60.416 54.545 0.00 0.00 0.00 4.00
2266 3444 2.608268 GGTTAAGTCTCTCGAAGGTGC 58.392 52.381 0.00 0.00 0.00 5.01
2267 3445 2.029290 GGTTAAGTCTCTCGAAGGTGCA 60.029 50.000 0.00 0.00 0.00 4.57
2279 3459 2.093658 CGAAGGTGCACATAAGGGTAGT 60.094 50.000 20.43 0.00 0.00 2.73
2304 3484 4.213596 TGCGTGCATGCATTTATAGAAG 57.786 40.909 29.30 7.98 40.62 2.85
2305 3485 3.627123 TGCGTGCATGCATTTATAGAAGT 59.373 39.130 29.30 0.00 40.62 3.01
2306 3486 4.214437 GCGTGCATGCATTTATAGAAGTC 58.786 43.478 25.64 5.01 34.15 3.01
2328 3508 5.062683 GTCAGTGTATGCTTGTGTATGTGAG 59.937 44.000 0.00 0.00 0.00 3.51
2331 3511 2.385013 ATGCTTGTGTATGTGAGCGA 57.615 45.000 0.00 0.00 37.94 4.93
2332 3512 2.162319 TGCTTGTGTATGTGAGCGAA 57.838 45.000 0.00 0.00 37.94 4.70
2340 3520 5.344884 TGTGTATGTGAGCGAATTCGATTA 58.655 37.500 31.01 19.43 43.02 1.75
2345 3525 8.508875 TGTATGTGAGCGAATTCGATTATACTA 58.491 33.333 31.01 18.33 43.02 1.82
2349 3529 7.326063 TGTGAGCGAATTCGATTATACTATGTG 59.674 37.037 31.01 0.00 43.02 3.21
2404 3584 8.715191 AAAACAGTTCATTGCAATTTTGAGTA 57.285 26.923 9.83 0.00 0.00 2.59
2424 3604 1.915141 ATCAACCACCTTGCTCCTTG 58.085 50.000 0.00 0.00 0.00 3.61
2425 3605 0.823356 TCAACCACCTTGCTCCTTGC 60.823 55.000 0.00 0.00 43.25 4.01
2438 3618 4.494350 GCTCCTTGCATATGTGTTATGG 57.506 45.455 4.29 1.73 42.31 2.74
2439 3619 3.304928 GCTCCTTGCATATGTGTTATGGC 60.305 47.826 4.29 0.00 42.31 4.40
2440 3620 4.139786 CTCCTTGCATATGTGTTATGGCT 58.860 43.478 4.29 0.00 38.53 4.75
2441 3621 5.303259 TCCTTGCATATGTGTTATGGCTA 57.697 39.130 4.29 0.00 38.53 3.93
2442 3622 5.308014 TCCTTGCATATGTGTTATGGCTAG 58.692 41.667 4.29 0.00 38.53 3.42
2443 3623 5.065914 CCTTGCATATGTGTTATGGCTAGT 58.934 41.667 4.29 0.00 38.53 2.57
2444 3624 5.532406 CCTTGCATATGTGTTATGGCTAGTT 59.468 40.000 4.29 0.00 38.53 2.24
2445 3625 6.039717 CCTTGCATATGTGTTATGGCTAGTTT 59.960 38.462 4.29 0.00 38.53 2.66
2446 3626 7.403312 TTGCATATGTGTTATGGCTAGTTTT 57.597 32.000 4.29 0.00 38.53 2.43
2447 3627 7.403312 TGCATATGTGTTATGGCTAGTTTTT 57.597 32.000 4.29 0.00 38.53 1.94
2468 3648 7.972832 TTTTTCTTAAATCTCAGCCGACTAA 57.027 32.000 0.00 0.00 0.00 2.24
2469 3649 7.972832 TTTTCTTAAATCTCAGCCGACTAAA 57.027 32.000 0.00 0.00 0.00 1.85
2470 3650 6.963049 TTCTTAAATCTCAGCCGACTAAAC 57.037 37.500 0.00 0.00 0.00 2.01
2471 3651 6.282199 TCTTAAATCTCAGCCGACTAAACT 57.718 37.500 0.00 0.00 0.00 2.66
2472 3652 6.698380 TCTTAAATCTCAGCCGACTAAACTT 58.302 36.000 0.00 0.00 0.00 2.66
2473 3653 7.159372 TCTTAAATCTCAGCCGACTAAACTTT 58.841 34.615 0.00 0.00 0.00 2.66
2474 3654 8.308931 TCTTAAATCTCAGCCGACTAAACTTTA 58.691 33.333 0.00 0.00 0.00 1.85
2475 3655 8.836268 TTAAATCTCAGCCGACTAAACTTTAA 57.164 30.769 0.00 0.00 0.00 1.52
2476 3656 6.723131 AATCTCAGCCGACTAAACTTTAAC 57.277 37.500 0.00 0.00 0.00 2.01
2477 3657 5.204409 TCTCAGCCGACTAAACTTTAACA 57.796 39.130 0.00 0.00 0.00 2.41
2478 3658 5.603596 TCTCAGCCGACTAAACTTTAACAA 58.396 37.500 0.00 0.00 0.00 2.83
2479 3659 6.228258 TCTCAGCCGACTAAACTTTAACAAT 58.772 36.000 0.00 0.00 0.00 2.71
2480 3660 6.147164 TCTCAGCCGACTAAACTTTAACAATG 59.853 38.462 0.00 0.00 0.00 2.82
2481 3661 5.761234 TCAGCCGACTAAACTTTAACAATGT 59.239 36.000 0.00 0.00 0.00 2.71
2482 3662 6.073440 TCAGCCGACTAAACTTTAACAATGTC 60.073 38.462 0.00 0.00 0.00 3.06
2483 3663 5.761234 AGCCGACTAAACTTTAACAATGTCA 59.239 36.000 0.00 0.00 0.00 3.58
2484 3664 6.430000 AGCCGACTAAACTTTAACAATGTCAT 59.570 34.615 0.00 0.00 0.00 3.06
2485 3665 6.741358 GCCGACTAAACTTTAACAATGTCATC 59.259 38.462 0.00 0.00 0.00 2.92
2486 3666 7.360946 GCCGACTAAACTTTAACAATGTCATCT 60.361 37.037 0.00 0.00 0.00 2.90
2487 3667 8.169268 CCGACTAAACTTTAACAATGTCATCTC 58.831 37.037 0.00 0.00 0.00 2.75
2488 3668 8.926710 CGACTAAACTTTAACAATGTCATCTCT 58.073 33.333 0.00 0.00 0.00 3.10
2493 3673 9.846248 AAACTTTAACAATGTCATCTCTATTGC 57.154 29.630 0.00 0.00 35.71 3.56
2494 3674 8.565896 ACTTTAACAATGTCATCTCTATTGCA 57.434 30.769 0.00 0.00 35.71 4.08
2495 3675 9.182214 ACTTTAACAATGTCATCTCTATTGCAT 57.818 29.630 0.00 0.00 35.71 3.96
2496 3676 9.661187 CTTTAACAATGTCATCTCTATTGCATC 57.339 33.333 0.00 0.00 35.71 3.91
2497 3677 8.969260 TTAACAATGTCATCTCTATTGCATCT 57.031 30.769 0.00 0.00 35.71 2.90
2499 3679 8.969260 AACAATGTCATCTCTATTGCATCTAA 57.031 30.769 0.00 0.00 35.71 2.10
2500 3680 8.375608 ACAATGTCATCTCTATTGCATCTAAC 57.624 34.615 0.00 0.00 35.71 2.34
2501 3681 7.443575 ACAATGTCATCTCTATTGCATCTAACC 59.556 37.037 0.00 0.00 35.71 2.85
2502 3682 6.737720 TGTCATCTCTATTGCATCTAACCT 57.262 37.500 0.00 0.00 0.00 3.50
2503 3683 7.839680 TGTCATCTCTATTGCATCTAACCTA 57.160 36.000 0.00 0.00 0.00 3.08
2504 3684 8.250143 TGTCATCTCTATTGCATCTAACCTAA 57.750 34.615 0.00 0.00 0.00 2.69
2505 3685 8.363390 TGTCATCTCTATTGCATCTAACCTAAG 58.637 37.037 0.00 0.00 0.00 2.18
2506 3686 8.364142 GTCATCTCTATTGCATCTAACCTAAGT 58.636 37.037 0.00 0.00 0.00 2.24
2507 3687 9.588096 TCATCTCTATTGCATCTAACCTAAGTA 57.412 33.333 0.00 0.00 0.00 2.24
2512 3692 9.817809 TCTATTGCATCTAACCTAAGTAAAGTG 57.182 33.333 0.00 0.00 0.00 3.16
2513 3693 9.601217 CTATTGCATCTAACCTAAGTAAAGTGT 57.399 33.333 0.00 0.00 0.00 3.55
2514 3694 7.667043 TTGCATCTAACCTAAGTAAAGTGTG 57.333 36.000 0.00 0.00 0.00 3.82
2515 3695 6.999950 TGCATCTAACCTAAGTAAAGTGTGA 58.000 36.000 0.00 0.00 0.00 3.58
2516 3696 7.097192 TGCATCTAACCTAAGTAAAGTGTGAG 58.903 38.462 0.00 0.00 0.00 3.51
2517 3697 7.097834 GCATCTAACCTAAGTAAAGTGTGAGT 58.902 38.462 0.00 0.00 0.00 3.41
2518 3698 7.063544 GCATCTAACCTAAGTAAAGTGTGAGTG 59.936 40.741 0.00 0.00 0.00 3.51
2519 3699 6.989659 TCTAACCTAAGTAAAGTGTGAGTGG 58.010 40.000 0.00 0.00 0.00 4.00
2520 3700 5.625568 AACCTAAGTAAAGTGTGAGTGGT 57.374 39.130 0.00 0.00 0.00 4.16
2521 3701 5.211174 ACCTAAGTAAAGTGTGAGTGGTC 57.789 43.478 0.00 0.00 0.00 4.02
2522 3702 4.235360 CCTAAGTAAAGTGTGAGTGGTCG 58.765 47.826 0.00 0.00 0.00 4.79
2523 3703 2.814280 AGTAAAGTGTGAGTGGTCGG 57.186 50.000 0.00 0.00 0.00 4.79
2524 3704 2.037144 AGTAAAGTGTGAGTGGTCGGT 58.963 47.619 0.00 0.00 0.00 4.69
2525 3705 2.132762 GTAAAGTGTGAGTGGTCGGTG 58.867 52.381 0.00 0.00 0.00 4.94
2526 3706 0.828022 AAAGTGTGAGTGGTCGGTGA 59.172 50.000 0.00 0.00 0.00 4.02
2527 3707 0.389391 AAGTGTGAGTGGTCGGTGAG 59.611 55.000 0.00 0.00 0.00 3.51
2528 3708 1.006102 GTGTGAGTGGTCGGTGAGG 60.006 63.158 0.00 0.00 0.00 3.86
2529 3709 1.152631 TGTGAGTGGTCGGTGAGGA 60.153 57.895 0.00 0.00 0.00 3.71
2530 3710 1.179174 TGTGAGTGGTCGGTGAGGAG 61.179 60.000 0.00 0.00 0.00 3.69
2531 3711 0.894184 GTGAGTGGTCGGTGAGGAGA 60.894 60.000 0.00 0.00 0.00 3.71
2532 3712 0.178973 TGAGTGGTCGGTGAGGAGAA 60.179 55.000 0.00 0.00 0.00 2.87
2533 3713 0.528470 GAGTGGTCGGTGAGGAGAAG 59.472 60.000 0.00 0.00 0.00 2.85
2534 3714 0.178958 AGTGGTCGGTGAGGAGAAGT 60.179 55.000 0.00 0.00 0.00 3.01
2535 3715 0.680061 GTGGTCGGTGAGGAGAAGTT 59.320 55.000 0.00 0.00 0.00 2.66
2536 3716 0.966920 TGGTCGGTGAGGAGAAGTTC 59.033 55.000 0.00 0.00 0.00 3.01
2537 3717 0.966920 GGTCGGTGAGGAGAAGTTCA 59.033 55.000 5.50 0.00 0.00 3.18
2538 3718 1.067495 GGTCGGTGAGGAGAAGTTCAG 60.067 57.143 5.50 0.00 0.00 3.02
2539 3719 1.614413 GTCGGTGAGGAGAAGTTCAGT 59.386 52.381 5.50 0.00 0.00 3.41
2540 3720 2.818432 GTCGGTGAGGAGAAGTTCAGTA 59.182 50.000 5.50 0.00 0.00 2.74
2541 3721 2.818432 TCGGTGAGGAGAAGTTCAGTAC 59.182 50.000 5.50 0.00 0.00 2.73
2542 3722 2.414293 CGGTGAGGAGAAGTTCAGTACG 60.414 54.545 5.50 0.00 0.00 3.67
2543 3723 2.818432 GGTGAGGAGAAGTTCAGTACGA 59.182 50.000 5.50 0.00 0.00 3.43
2544 3724 3.444388 GGTGAGGAGAAGTTCAGTACGAT 59.556 47.826 5.50 0.00 0.00 3.73
2545 3725 4.439016 GGTGAGGAGAAGTTCAGTACGATC 60.439 50.000 5.50 0.00 0.00 3.69
2546 3726 3.374367 TGAGGAGAAGTTCAGTACGATCG 59.626 47.826 14.88 14.88 0.00 3.69
2547 3727 2.097791 AGGAGAAGTTCAGTACGATCGC 59.902 50.000 16.60 0.00 0.00 4.58
2548 3728 2.097791 GGAGAAGTTCAGTACGATCGCT 59.902 50.000 16.60 1.60 0.00 4.93
2549 3729 3.311871 GGAGAAGTTCAGTACGATCGCTA 59.688 47.826 16.60 4.14 0.00 4.26
2550 3730 4.520078 GAGAAGTTCAGTACGATCGCTAG 58.480 47.826 16.60 2.92 0.00 3.42
2551 3731 2.759538 AGTTCAGTACGATCGCTAGC 57.240 50.000 16.60 4.06 0.00 3.42
2552 3732 1.334243 AGTTCAGTACGATCGCTAGCC 59.666 52.381 16.60 0.00 0.00 3.93
2553 3733 0.306840 TTCAGTACGATCGCTAGCCG 59.693 55.000 16.60 9.78 38.61 5.52
2554 3734 0.812811 TCAGTACGATCGCTAGCCGT 60.813 55.000 16.60 19.03 39.94 5.68
2555 3735 0.029035 CAGTACGATCGCTAGCCGTT 59.971 55.000 20.00 6.37 37.69 4.44
2556 3736 1.262417 CAGTACGATCGCTAGCCGTTA 59.738 52.381 20.00 6.48 37.69 3.18
2557 3737 1.530293 AGTACGATCGCTAGCCGTTAG 59.470 52.381 20.00 8.80 37.69 2.34
2558 3738 1.528586 GTACGATCGCTAGCCGTTAGA 59.471 52.381 20.00 7.22 37.69 2.10
2559 3739 1.236628 ACGATCGCTAGCCGTTAGAT 58.763 50.000 16.60 5.40 38.35 1.98
2560 3740 1.197264 ACGATCGCTAGCCGTTAGATC 59.803 52.381 16.60 13.43 38.35 2.75
2561 3741 1.466024 CGATCGCTAGCCGTTAGATCC 60.466 57.143 18.25 6.50 35.56 3.36
2562 3742 1.540267 GATCGCTAGCCGTTAGATCCA 59.460 52.381 9.66 0.00 38.35 3.41
2563 3743 1.617322 TCGCTAGCCGTTAGATCCAT 58.383 50.000 9.66 0.00 38.35 3.41
2564 3744 1.961394 TCGCTAGCCGTTAGATCCATT 59.039 47.619 9.66 0.00 38.35 3.16
2565 3745 2.364324 TCGCTAGCCGTTAGATCCATTT 59.636 45.455 9.66 0.00 38.35 2.32
2566 3746 3.131396 CGCTAGCCGTTAGATCCATTTT 58.869 45.455 9.66 0.00 0.00 1.82
2567 3747 3.059597 CGCTAGCCGTTAGATCCATTTTG 60.060 47.826 9.66 0.00 0.00 2.44
2568 3748 3.877508 GCTAGCCGTTAGATCCATTTTGT 59.122 43.478 2.29 0.00 0.00 2.83
2569 3749 4.335594 GCTAGCCGTTAGATCCATTTTGTT 59.664 41.667 2.29 0.00 0.00 2.83
2570 3750 5.163652 GCTAGCCGTTAGATCCATTTTGTTT 60.164 40.000 2.29 0.00 0.00 2.83
2571 3751 5.722021 AGCCGTTAGATCCATTTTGTTTT 57.278 34.783 0.00 0.00 0.00 2.43
2572 3752 5.469479 AGCCGTTAGATCCATTTTGTTTTG 58.531 37.500 0.00 0.00 0.00 2.44
2573 3753 5.242838 AGCCGTTAGATCCATTTTGTTTTGA 59.757 36.000 0.00 0.00 0.00 2.69
2574 3754 5.572896 GCCGTTAGATCCATTTTGTTTTGAG 59.427 40.000 0.00 0.00 0.00 3.02
2575 3755 6.092748 CCGTTAGATCCATTTTGTTTTGAGG 58.907 40.000 0.00 0.00 0.00 3.86
2576 3756 6.294508 CCGTTAGATCCATTTTGTTTTGAGGT 60.295 38.462 0.00 0.00 0.00 3.85
2577 3757 7.145323 CGTTAGATCCATTTTGTTTTGAGGTT 58.855 34.615 0.00 0.00 0.00 3.50
2578 3758 7.326063 CGTTAGATCCATTTTGTTTTGAGGTTC 59.674 37.037 0.00 0.00 0.00 3.62
2579 3759 6.983906 AGATCCATTTTGTTTTGAGGTTCT 57.016 33.333 0.00 0.00 0.00 3.01
2580 3760 6.986250 AGATCCATTTTGTTTTGAGGTTCTC 58.014 36.000 0.00 0.00 0.00 2.87
2581 3761 6.550854 AGATCCATTTTGTTTTGAGGTTCTCA 59.449 34.615 0.00 0.00 38.87 3.27
2582 3762 6.729690 TCCATTTTGTTTTGAGGTTCTCAT 57.270 33.333 0.00 0.00 40.39 2.90
2583 3763 6.514947 TCCATTTTGTTTTGAGGTTCTCATG 58.485 36.000 0.00 0.00 40.39 3.07
2584 3764 5.697633 CCATTTTGTTTTGAGGTTCTCATGG 59.302 40.000 0.00 0.00 40.39 3.66
2585 3765 6.462768 CCATTTTGTTTTGAGGTTCTCATGGA 60.463 38.462 0.00 0.00 40.39 3.41
2586 3766 6.729690 TTTTGTTTTGAGGTTCTCATGGAT 57.270 33.333 0.00 0.00 40.39 3.41
2587 3767 5.710513 TTGTTTTGAGGTTCTCATGGATG 57.289 39.130 0.00 0.00 40.39 3.51
2588 3768 3.507233 TGTTTTGAGGTTCTCATGGATGC 59.493 43.478 0.00 0.00 40.39 3.91
2589 3769 3.726557 TTTGAGGTTCTCATGGATGCT 57.273 42.857 0.00 0.00 40.39 3.79
2590 3770 4.842531 TTTGAGGTTCTCATGGATGCTA 57.157 40.909 0.00 0.00 40.39 3.49
2591 3771 3.827008 TGAGGTTCTCATGGATGCTAC 57.173 47.619 0.00 0.00 35.39 3.58
2592 3772 3.378512 TGAGGTTCTCATGGATGCTACT 58.621 45.455 0.00 0.00 35.39 2.57
2593 3773 3.386078 TGAGGTTCTCATGGATGCTACTC 59.614 47.826 0.00 0.00 35.39 2.59
2594 3774 2.703007 AGGTTCTCATGGATGCTACTCC 59.297 50.000 0.00 0.00 35.74 3.85
2595 3775 2.224402 GGTTCTCATGGATGCTACTCCC 60.224 54.545 0.00 0.00 34.12 4.30
2596 3776 2.703007 GTTCTCATGGATGCTACTCCCT 59.297 50.000 0.00 0.00 34.12 4.20
2597 3777 3.051940 TCTCATGGATGCTACTCCCTT 57.948 47.619 0.00 0.00 34.12 3.95
2598 3778 2.968574 TCTCATGGATGCTACTCCCTTC 59.031 50.000 0.00 0.00 34.12 3.46
2599 3779 1.688735 TCATGGATGCTACTCCCTTCG 59.311 52.381 0.00 0.00 34.12 3.79
2600 3780 1.414181 CATGGATGCTACTCCCTTCGT 59.586 52.381 0.00 0.00 34.12 3.85
2601 3781 1.568504 TGGATGCTACTCCCTTCGTT 58.431 50.000 0.00 0.00 34.12 3.85
2602 3782 1.480954 TGGATGCTACTCCCTTCGTTC 59.519 52.381 0.00 0.00 34.12 3.95
2603 3783 1.202545 GGATGCTACTCCCTTCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
2604 3784 0.831307 ATGCTACTCCCTTCGTTCCC 59.169 55.000 0.00 0.00 0.00 3.97
2605 3785 0.543410 TGCTACTCCCTTCGTTCCCA 60.543 55.000 0.00 0.00 0.00 4.37
2606 3786 0.611714 GCTACTCCCTTCGTTCCCAA 59.388 55.000 0.00 0.00 0.00 4.12
2607 3787 1.002773 GCTACTCCCTTCGTTCCCAAA 59.997 52.381 0.00 0.00 0.00 3.28
2608 3788 2.355818 GCTACTCCCTTCGTTCCCAAAT 60.356 50.000 0.00 0.00 0.00 2.32
2609 3789 3.118519 GCTACTCCCTTCGTTCCCAAATA 60.119 47.826 0.00 0.00 0.00 1.40
2610 3790 4.444449 GCTACTCCCTTCGTTCCCAAATAT 60.444 45.833 0.00 0.00 0.00 1.28
2611 3791 5.221581 GCTACTCCCTTCGTTCCCAAATATA 60.222 44.000 0.00 0.00 0.00 0.86
2612 3792 5.703730 ACTCCCTTCGTTCCCAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
2613 3793 5.681639 ACTCCCTTCGTTCCCAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
2614 3794 5.191124 ACTCCCTTCGTTCCCAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
2615 3795 5.677567 TCCCTTCGTTCCCAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
2616 3796 5.427481 TCCCTTCGTTCCCAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
2617 3797 6.069847 TCCCTTCGTTCCCAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
2618 3798 6.602009 CCCTTCGTTCCCAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
2619 3799 7.122204 CCCTTCGTTCCCAAATATAAGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
2620 3800 8.520351 CCTTCGTTCCCAAATATAAGTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
2623 3803 9.947433 TCGTTCCCAAATATAAGTCTTTTTAGA 57.053 29.630 0.00 0.00 0.00 2.10
2636 3816 7.939784 AGTCTTTTTAGAGGTTTCAACAAGT 57.060 32.000 0.00 0.00 0.00 3.16
2637 3817 9.457436 AAGTCTTTTTAGAGGTTTCAACAAGTA 57.543 29.630 0.00 0.00 0.00 2.24
2638 3818 9.457436 AGTCTTTTTAGAGGTTTCAACAAGTAA 57.543 29.630 0.00 0.00 0.00 2.24
2639 3819 9.499585 GTCTTTTTAGAGGTTTCAACAAGTAAC 57.500 33.333 0.00 0.00 0.00 2.50
2640 3820 9.457436 TCTTTTTAGAGGTTTCAACAAGTAACT 57.543 29.630 0.00 0.00 0.00 2.24
2643 3823 9.669887 TTTTAGAGGTTTCAACAAGTAACTACA 57.330 29.630 0.00 0.00 0.00 2.74
2644 3824 9.841295 TTTAGAGGTTTCAACAAGTAACTACAT 57.159 29.630 0.00 0.00 0.00 2.29
2646 3826 8.828688 AGAGGTTTCAACAAGTAACTACATAC 57.171 34.615 0.00 0.00 0.00 2.39
2647 3827 7.597743 AGAGGTTTCAACAAGTAACTACATACG 59.402 37.037 0.00 0.00 0.00 3.06
2648 3828 6.647895 AGGTTTCAACAAGTAACTACATACGG 59.352 38.462 0.00 0.00 0.00 4.02
2649 3829 6.646240 GGTTTCAACAAGTAACTACATACGGA 59.354 38.462 0.00 0.00 0.00 4.69
2650 3830 7.148689 GGTTTCAACAAGTAACTACATACGGAG 60.149 40.741 0.00 0.00 0.00 4.63
2651 3831 5.404946 TCAACAAGTAACTACATACGGAGC 58.595 41.667 0.00 0.00 0.00 4.70
2652 3832 5.047872 TCAACAAGTAACTACATACGGAGCA 60.048 40.000 0.00 0.00 0.00 4.26
2653 3833 5.395682 ACAAGTAACTACATACGGAGCAA 57.604 39.130 0.00 0.00 0.00 3.91
2654 3834 5.786311 ACAAGTAACTACATACGGAGCAAA 58.214 37.500 0.00 0.00 0.00 3.68
2655 3835 6.225318 ACAAGTAACTACATACGGAGCAAAA 58.775 36.000 0.00 0.00 0.00 2.44
2656 3836 6.877322 ACAAGTAACTACATACGGAGCAAAAT 59.123 34.615 0.00 0.00 0.00 1.82
2657 3837 6.903883 AGTAACTACATACGGAGCAAAATG 57.096 37.500 0.00 0.00 0.00 2.32
2658 3838 6.636705 AGTAACTACATACGGAGCAAAATGA 58.363 36.000 0.00 0.00 0.00 2.57
2659 3839 7.101054 AGTAACTACATACGGAGCAAAATGAA 58.899 34.615 0.00 0.00 0.00 2.57
2660 3840 7.769044 AGTAACTACATACGGAGCAAAATGAAT 59.231 33.333 0.00 0.00 0.00 2.57
2661 3841 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2662 3842 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2663 3843 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2664 3844 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2665 3845 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2666 3846 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2667 3847 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2668 3848 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2669 3849 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2670 3850 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
2671 3851 6.403527 CGGAGCAAAATGAATGAATCTACACA 60.404 38.462 0.00 0.00 0.00 3.72
2672 3852 6.749118 GGAGCAAAATGAATGAATCTACACAC 59.251 38.462 0.00 0.00 0.00 3.82
2673 3853 7.218228 AGCAAAATGAATGAATCTACACACA 57.782 32.000 0.00 0.00 0.00 3.72
2674 3854 7.660112 AGCAAAATGAATGAATCTACACACAA 58.340 30.769 0.00 0.00 0.00 3.33
2675 3855 8.143193 AGCAAAATGAATGAATCTACACACAAA 58.857 29.630 0.00 0.00 0.00 2.83
2676 3856 8.763356 GCAAAATGAATGAATCTACACACAAAA 58.237 29.630 0.00 0.00 0.00 2.44
2708 3888 9.392259 TCTATATACTCCTACATCCGTATGTTG 57.608 37.037 0.00 0.00 44.07 3.33
2709 3889 9.175312 CTATATACTCCTACATCCGTATGTTGT 57.825 37.037 0.00 0.00 44.07 3.32
2711 3891 5.769484 ACTCCTACATCCGTATGTTGTAG 57.231 43.478 0.00 12.27 44.07 2.74
2712 3892 5.198965 ACTCCTACATCCGTATGTTGTAGT 58.801 41.667 0.00 0.00 44.07 2.73
2713 3893 5.298777 ACTCCTACATCCGTATGTTGTAGTC 59.701 44.000 0.00 0.00 44.07 2.59
2714 3894 4.581824 TCCTACATCCGTATGTTGTAGTCC 59.418 45.833 0.00 0.00 44.07 3.85
2715 3895 4.340097 CCTACATCCGTATGTTGTAGTCCA 59.660 45.833 0.00 0.00 44.07 4.02
2716 3896 5.010719 CCTACATCCGTATGTTGTAGTCCAT 59.989 44.000 0.00 0.00 44.07 3.41
2717 3897 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
2718 3898 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
2719 3899 6.880484 ACATCCGTATGTTGTAGTCCATTTA 58.120 36.000 0.00 0.00 44.07 1.40
2720 3900 7.332557 ACATCCGTATGTTGTAGTCCATTTAA 58.667 34.615 0.00 0.00 44.07 1.52
2721 3901 7.825270 ACATCCGTATGTTGTAGTCCATTTAAA 59.175 33.333 0.00 0.00 44.07 1.52
2722 3902 8.836413 CATCCGTATGTTGTAGTCCATTTAAAT 58.164 33.333 0.00 0.00 0.00 1.40
2723 3903 8.428186 TCCGTATGTTGTAGTCCATTTAAATC 57.572 34.615 0.00 0.00 0.00 2.17
2724 3904 8.262227 TCCGTATGTTGTAGTCCATTTAAATCT 58.738 33.333 0.00 0.00 0.00 2.40
2725 3905 8.889717 CCGTATGTTGTAGTCCATTTAAATCTT 58.110 33.333 0.00 0.00 0.00 2.40
2753 3933 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2754 3934 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
2755 3935 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
2756 3936 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
2757 3937 6.522946 ACTTATATTTAGGAACGGAGGAAGC 58.477 40.000 0.00 0.00 0.00 3.86
2758 3938 6.099269 ACTTATATTTAGGAACGGAGGAAGCA 59.901 38.462 0.00 0.00 0.00 3.91
2759 3939 2.762535 TTTAGGAACGGAGGAAGCAG 57.237 50.000 0.00 0.00 0.00 4.24
2760 3940 1.640917 TTAGGAACGGAGGAAGCAGT 58.359 50.000 0.00 0.00 0.00 4.40
2761 3941 1.640917 TAGGAACGGAGGAAGCAGTT 58.359 50.000 0.00 0.00 0.00 3.16
2762 3942 0.765510 AGGAACGGAGGAAGCAGTTT 59.234 50.000 0.00 0.00 0.00 2.66
2763 3943 1.143073 AGGAACGGAGGAAGCAGTTTT 59.857 47.619 0.00 0.00 0.00 2.43
2764 3944 1.954382 GGAACGGAGGAAGCAGTTTTT 59.046 47.619 0.00 0.00 0.00 1.94
2784 3964 0.732571 TTTTCCGAGAATCCGCATGC 59.267 50.000 7.91 7.91 0.00 4.06
2785 3965 0.392327 TTTCCGAGAATCCGCATGCA 60.392 50.000 19.57 0.00 0.00 3.96
2786 3966 0.811219 TTCCGAGAATCCGCATGCAG 60.811 55.000 19.57 6.53 0.00 4.41
2787 3967 2.249535 CCGAGAATCCGCATGCAGG 61.250 63.158 19.57 19.08 0.00 4.85
2788 3968 2.249535 CGAGAATCCGCATGCAGGG 61.250 63.158 19.57 12.04 0.00 4.45
2789 3969 1.153086 GAGAATCCGCATGCAGGGT 60.153 57.895 19.57 13.36 0.00 4.34
2790 3970 0.106708 GAGAATCCGCATGCAGGGTA 59.893 55.000 19.57 5.54 0.00 3.69
2791 3971 0.107456 AGAATCCGCATGCAGGGTAG 59.893 55.000 19.57 0.00 0.00 3.18
2792 3972 0.179045 GAATCCGCATGCAGGGTAGT 60.179 55.000 19.57 4.37 0.00 2.73
2793 3973 0.179045 AATCCGCATGCAGGGTAGTC 60.179 55.000 19.57 0.00 0.00 2.59
2794 3974 2.369257 ATCCGCATGCAGGGTAGTCG 62.369 60.000 19.57 0.00 0.00 4.18
2795 3975 2.586079 CGCATGCAGGGTAGTCGG 60.586 66.667 19.57 0.00 0.00 4.79
2796 3976 2.203070 GCATGCAGGGTAGTCGGG 60.203 66.667 14.21 0.00 0.00 5.14
2797 3977 2.505982 CATGCAGGGTAGTCGGGG 59.494 66.667 0.00 0.00 0.00 5.73
2798 3978 2.768344 ATGCAGGGTAGTCGGGGG 60.768 66.667 0.00 0.00 0.00 5.40
2817 3997 3.129502 CCTCGCACCCAGCATGTG 61.130 66.667 0.00 0.00 46.13 3.21
2825 4005 2.681064 CCAGCATGTGGGTTGGGG 60.681 66.667 6.46 0.00 43.63 4.96
2826 4006 3.384532 CAGCATGTGGGTTGGGGC 61.385 66.667 0.00 0.00 0.00 5.80
2827 4007 4.702274 AGCATGTGGGTTGGGGCC 62.702 66.667 0.00 0.00 0.00 5.80
2887 4067 2.892025 CCAATAGGGCAGCAAAGCT 58.108 52.632 0.00 0.00 40.77 3.74
2888 4068 2.057137 CCAATAGGGCAGCAAAGCTA 57.943 50.000 0.00 0.00 36.40 3.32
2889 4069 1.952296 CCAATAGGGCAGCAAAGCTAG 59.048 52.381 0.00 0.00 36.40 3.42
2890 4070 1.336125 CAATAGGGCAGCAAAGCTAGC 59.664 52.381 6.62 6.62 36.40 3.42
2891 4071 0.179006 ATAGGGCAGCAAAGCTAGCC 60.179 55.000 12.13 18.05 45.24 3.93
2892 4072 1.274703 TAGGGCAGCAAAGCTAGCCT 61.275 55.000 22.35 0.00 45.26 4.58
2893 4073 1.224592 GGGCAGCAAAGCTAGCCTA 59.775 57.895 22.35 0.00 45.26 3.93
2894 4074 1.098129 GGGCAGCAAAGCTAGCCTAC 61.098 60.000 22.35 0.00 45.26 3.18
2895 4075 0.392998 GGCAGCAAAGCTAGCCTACA 60.393 55.000 12.13 0.00 43.83 2.74
2896 4076 0.729690 GCAGCAAAGCTAGCCTACAC 59.270 55.000 12.13 0.00 36.40 2.90
2897 4077 1.373570 CAGCAAAGCTAGCCTACACC 58.626 55.000 12.13 0.00 36.40 4.16
2898 4078 0.253327 AGCAAAGCTAGCCTACACCC 59.747 55.000 12.13 0.00 36.99 4.61
2899 4079 0.035439 GCAAAGCTAGCCTACACCCA 60.035 55.000 12.13 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.149005 AGACGAGCATAACCCCAAAAA 57.851 42.857 0.00 0.00 0.00 1.94
23 24 2.871096 AGACGAGCATAACCCCAAAA 57.129 45.000 0.00 0.00 0.00 2.44
24 25 2.871096 AAGACGAGCATAACCCCAAA 57.129 45.000 0.00 0.00 0.00 3.28
25 26 3.869065 CTTAAGACGAGCATAACCCCAA 58.131 45.455 0.00 0.00 0.00 4.12
26 27 2.419574 GCTTAAGACGAGCATAACCCCA 60.420 50.000 6.67 0.00 39.89 4.96
27 28 2.210961 GCTTAAGACGAGCATAACCCC 58.789 52.381 6.67 0.00 39.89 4.95
28 29 2.158943 AGGCTTAAGACGAGCATAACCC 60.159 50.000 6.67 0.00 41.89 4.11
29 30 3.180891 AGGCTTAAGACGAGCATAACC 57.819 47.619 6.67 0.00 41.89 2.85
30 31 4.209495 GCTTAGGCTTAAGACGAGCATAAC 59.791 45.833 25.62 4.84 40.27 1.89
31 32 4.369182 GCTTAGGCTTAAGACGAGCATAA 58.631 43.478 25.62 11.19 42.12 1.90
32 33 3.978687 GCTTAGGCTTAAGACGAGCATA 58.021 45.455 25.62 4.56 41.89 3.14
33 34 2.827652 GCTTAGGCTTAAGACGAGCAT 58.172 47.619 25.62 5.47 41.89 3.79
34 35 2.295253 GCTTAGGCTTAAGACGAGCA 57.705 50.000 25.62 3.47 41.89 4.26
55 56 6.001460 CAGTAACCACATGACCCTCTAAAAA 58.999 40.000 0.00 0.00 0.00 1.94
56 57 5.072600 ACAGTAACCACATGACCCTCTAAAA 59.927 40.000 0.00 0.00 0.00 1.52
57 58 4.595781 ACAGTAACCACATGACCCTCTAAA 59.404 41.667 0.00 0.00 0.00 1.85
58 59 4.020573 CACAGTAACCACATGACCCTCTAA 60.021 45.833 0.00 0.00 0.00 2.10
59 60 3.513912 CACAGTAACCACATGACCCTCTA 59.486 47.826 0.00 0.00 0.00 2.43
60 61 2.303022 CACAGTAACCACATGACCCTCT 59.697 50.000 0.00 0.00 0.00 3.69
61 62 2.038557 ACACAGTAACCACATGACCCTC 59.961 50.000 0.00 0.00 0.00 4.30
62 63 2.054799 ACACAGTAACCACATGACCCT 58.945 47.619 0.00 0.00 0.00 4.34
63 64 2.561478 ACACAGTAACCACATGACCC 57.439 50.000 0.00 0.00 0.00 4.46
64 65 4.911514 AAAACACAGTAACCACATGACC 57.088 40.909 0.00 0.00 0.00 4.02
84 85 4.644103 ATCGAGTAGTAGCCGCTAAAAA 57.356 40.909 0.46 0.00 0.00 1.94
85 86 4.644103 AATCGAGTAGTAGCCGCTAAAA 57.356 40.909 0.46 0.00 0.00 1.52
86 87 4.644103 AAATCGAGTAGTAGCCGCTAAA 57.356 40.909 0.46 0.00 0.00 1.85
87 88 4.576053 TGTAAATCGAGTAGTAGCCGCTAA 59.424 41.667 0.46 0.00 0.00 3.09
88 89 4.024556 GTGTAAATCGAGTAGTAGCCGCTA 60.025 45.833 0.00 0.00 0.00 4.26
89 90 2.947652 TGTAAATCGAGTAGTAGCCGCT 59.052 45.455 0.00 0.00 0.00 5.52
90 91 3.041492 GTGTAAATCGAGTAGTAGCCGC 58.959 50.000 0.00 0.00 0.00 6.53
91 92 4.282950 TGTGTAAATCGAGTAGTAGCCG 57.717 45.455 0.00 0.00 0.00 5.52
92 93 5.888105 TCTTGTGTAAATCGAGTAGTAGCC 58.112 41.667 0.00 0.00 0.00 3.93
93 94 7.807687 TTTCTTGTGTAAATCGAGTAGTAGC 57.192 36.000 0.00 0.00 0.00 3.58
94 95 9.790389 AGATTTCTTGTGTAAATCGAGTAGTAG 57.210 33.333 0.00 0.00 44.44 2.57
117 118 8.253810 GCTCCCTATTTGCTTTCTTTTTAAGAT 58.746 33.333 0.00 0.00 37.38 2.40
119 120 7.606349 AGCTCCCTATTTGCTTTCTTTTTAAG 58.394 34.615 0.00 0.00 32.61 1.85
121 122 7.539034 AAGCTCCCTATTTGCTTTCTTTTTA 57.461 32.000 0.00 0.00 43.47 1.52
126 127 5.700402 TCTAAGCTCCCTATTTGCTTTCT 57.300 39.130 4.79 0.00 43.47 2.52
195 196 9.829507 TTTTCTGTTCATGGATTTGTTAATGTT 57.170 25.926 0.00 0.00 0.00 2.71
202 203 6.183361 ACCCAATTTTCTGTTCATGGATTTGT 60.183 34.615 0.00 0.00 0.00 2.83
292 293 1.133823 CCATTCAACGGGGATCCATCA 60.134 52.381 15.23 0.00 0.00 3.07
296 297 1.102978 CAACCATTCAACGGGGATCC 58.897 55.000 1.92 1.92 0.00 3.36
297 298 1.743394 GACAACCATTCAACGGGGATC 59.257 52.381 0.00 0.00 0.00 3.36
298 299 1.354368 AGACAACCATTCAACGGGGAT 59.646 47.619 0.00 0.00 0.00 3.85
299 300 0.768622 AGACAACCATTCAACGGGGA 59.231 50.000 0.00 0.00 0.00 4.81
403 426 1.672356 CTGTTGGAGAAGGCCGGTG 60.672 63.158 1.90 0.00 0.00 4.94
447 473 4.243007 AGCCATTGTTTAGCAGTGAAAC 57.757 40.909 0.00 0.00 37.02 2.78
529 1431 3.630769 CACGACTTAGCTAGGTCATACCA 59.369 47.826 29.00 0.00 41.95 3.25
547 1449 4.081752 TCCCTTAAAATTAGCCGTACACGA 60.082 41.667 2.76 0.00 43.02 4.35
548 1450 4.183101 TCCCTTAAAATTAGCCGTACACG 58.817 43.478 0.00 0.00 39.44 4.49
549 1451 6.053650 AGATCCCTTAAAATTAGCCGTACAC 58.946 40.000 0.00 0.00 0.00 2.90
559 1461 7.848128 TCGAACTCACTAGATCCCTTAAAATT 58.152 34.615 0.00 0.00 0.00 1.82
561 1463 6.845758 TCGAACTCACTAGATCCCTTAAAA 57.154 37.500 0.00 0.00 0.00 1.52
568 1470 5.103290 GACTGATCGAACTCACTAGATCC 57.897 47.826 0.00 0.00 38.85 3.36
627 1542 1.270199 CGCAAGATGGATCAGCTAGCT 60.270 52.381 12.68 12.68 43.02 3.32
628 1543 1.146637 CGCAAGATGGATCAGCTAGC 58.853 55.000 6.62 6.62 43.02 3.42
629 1544 1.793258 CCGCAAGATGGATCAGCTAG 58.207 55.000 0.00 0.00 43.02 3.42
630 1545 0.250038 GCCGCAAGATGGATCAGCTA 60.250 55.000 0.00 0.00 43.02 3.32
634 1549 1.413118 TCTAGCCGCAAGATGGATCA 58.587 50.000 0.00 0.00 43.02 2.92
635 1550 2.139118 GTTCTAGCCGCAAGATGGATC 58.861 52.381 0.00 0.00 43.02 3.36
636 1551 1.486310 TGTTCTAGCCGCAAGATGGAT 59.514 47.619 0.00 0.00 43.02 3.41
637 1552 0.901827 TGTTCTAGCCGCAAGATGGA 59.098 50.000 0.00 0.00 43.02 3.41
638 1553 1.737838 TTGTTCTAGCCGCAAGATGG 58.262 50.000 0.00 0.00 43.02 3.51
639 1554 3.374988 TGAATTGTTCTAGCCGCAAGATG 59.625 43.478 0.00 0.00 43.02 2.90
640 1555 3.375299 GTGAATTGTTCTAGCCGCAAGAT 59.625 43.478 0.00 0.00 43.02 2.40
641 1556 2.742053 GTGAATTGTTCTAGCCGCAAGA 59.258 45.455 0.00 0.00 43.02 3.02
648 1581 4.433615 TCGATGGAGTGAATTGTTCTAGC 58.566 43.478 0.00 0.00 0.00 3.42
657 1590 3.819564 TCGGAAATCGATGGAGTGAAT 57.180 42.857 0.00 0.00 43.74 2.57
679 1612 9.917129 GATTGATCCATGCATGTTAATTAATCA 57.083 29.630 26.08 19.35 0.00 2.57
693 1626 3.313526 ACTTGCTTACGATTGATCCATGC 59.686 43.478 0.00 0.00 0.00 4.06
701 1634 3.677601 CATGCTCACTTGCTTACGATTG 58.322 45.455 0.00 0.00 0.00 2.67
731 1696 4.265073 CTCAACTAATTAAGCCTGCCACT 58.735 43.478 0.00 0.00 0.00 4.00
738 1703 6.625873 ATTAGCTGCTCAACTAATTAAGCC 57.374 37.500 4.91 0.00 35.98 4.35
778 1862 5.570205 TTATTCTCTTGTTGGGTGGTACA 57.430 39.130 0.00 0.00 0.00 2.90
791 1875 8.672329 TCCATGGATGTGGATTATTATTCTCTT 58.328 33.333 11.44 0.00 43.20 2.85
792 1876 8.223378 TCCATGGATGTGGATTATTATTCTCT 57.777 34.615 11.44 0.00 43.20 3.10
997 2159 4.178540 AGTGATTTGTTTGCATGCATAGC 58.821 39.130 23.37 14.74 0.00 2.97
999 2161 6.513806 ACTAGTGATTTGTTTGCATGCATA 57.486 33.333 23.37 14.80 0.00 3.14
1028 2190 2.420722 GTGGCTCGTAGGCTAGCTATAG 59.579 54.545 15.72 6.70 41.96 1.31
1029 2191 2.224695 TGTGGCTCGTAGGCTAGCTATA 60.225 50.000 15.72 5.39 41.96 1.31
1030 2192 1.249407 GTGGCTCGTAGGCTAGCTAT 58.751 55.000 15.72 6.45 41.96 2.97
1031 2193 0.106868 TGTGGCTCGTAGGCTAGCTA 60.107 55.000 15.72 2.18 41.96 3.32
1410 2578 3.136123 TAGAAGACCCGGCCGTCG 61.136 66.667 26.12 16.35 37.85 5.12
1560 2728 4.796231 GCGACGCGGGACATGAGT 62.796 66.667 12.47 0.00 0.00 3.41
1767 2935 3.071837 TAGATGACGCGGCACCCA 61.072 61.111 21.63 0.00 0.00 4.51
1779 2947 0.945099 CCATGCAGCTGCTGTAGATG 59.055 55.000 36.61 28.84 45.52 2.90
1861 3029 0.109086 ATCTTGTCGCACTGTCCGAG 60.109 55.000 0.00 0.00 35.11 4.63
1918 3086 5.526846 AGATACTAGCACCGTAGTTGACTAC 59.473 44.000 10.55 10.55 44.00 2.73
1919 3087 5.678583 AGATACTAGCACCGTAGTTGACTA 58.321 41.667 0.00 0.00 34.91 2.59
1920 3088 4.525024 AGATACTAGCACCGTAGTTGACT 58.475 43.478 0.00 0.00 34.91 3.41
1942 3110 4.118410 GAGCTAGAGTGCTACGTACAGTA 58.882 47.826 0.00 0.00 44.17 2.74
1943 3111 2.937799 GAGCTAGAGTGCTACGTACAGT 59.062 50.000 0.00 0.00 44.17 3.55
1944 3112 2.033577 CGAGCTAGAGTGCTACGTACAG 60.034 54.545 0.00 0.00 44.17 2.74
1945 3113 1.931841 CGAGCTAGAGTGCTACGTACA 59.068 52.381 0.00 0.00 44.17 2.90
1946 3114 1.932511 ACGAGCTAGAGTGCTACGTAC 59.067 52.381 0.00 0.00 44.17 3.67
1947 3115 2.306341 ACGAGCTAGAGTGCTACGTA 57.694 50.000 0.00 0.00 44.17 3.57
1948 3116 1.130749 CAACGAGCTAGAGTGCTACGT 59.869 52.381 0.00 0.00 44.17 3.57
1949 3117 1.130749 ACAACGAGCTAGAGTGCTACG 59.869 52.381 0.00 0.00 44.17 3.51
1950 3118 2.520979 CACAACGAGCTAGAGTGCTAC 58.479 52.381 0.00 0.00 44.17 3.58
1951 3119 2.921634 CACAACGAGCTAGAGTGCTA 57.078 50.000 0.00 0.00 44.17 3.49
2037 3206 7.597369 GCACTTAACGAAAATTATTTTGACCCT 59.403 33.333 7.72 0.00 34.54 4.34
2052 3225 7.519843 TCGCTTATTATTTTGCACTTAACGAA 58.480 30.769 0.00 0.00 0.00 3.85
2080 3253 1.608283 GCGAGGAACACAAGGCTAGTT 60.608 52.381 0.00 0.00 0.00 2.24
2082 3255 0.037326 TGCGAGGAACACAAGGCTAG 60.037 55.000 0.00 0.00 0.00 3.42
2099 3272 4.799419 ATTTTCACAAGCAAACATGTGC 57.201 36.364 0.00 0.00 43.52 4.57
2100 3273 6.825284 TGTATTTTCACAAGCAAACATGTG 57.175 33.333 0.00 0.00 44.84 3.21
2122 3298 3.440173 AGGATAGGTTGTTGCACGAAATG 59.560 43.478 0.00 0.00 0.00 2.32
2134 3310 7.645058 ATGGAAATTACACAAGGATAGGTTG 57.355 36.000 0.00 0.00 0.00 3.77
2135 3311 9.936329 AATATGGAAATTACACAAGGATAGGTT 57.064 29.630 0.00 0.00 0.00 3.50
2136 3312 9.936329 AAATATGGAAATTACACAAGGATAGGT 57.064 29.630 0.00 0.00 0.00 3.08
2139 3315 9.194972 TGCAAATATGGAAATTACACAAGGATA 57.805 29.630 0.00 0.00 0.00 2.59
2140 3316 8.076910 TGCAAATATGGAAATTACACAAGGAT 57.923 30.769 0.00 0.00 0.00 3.24
2143 3319 9.810231 GTTTTGCAAATATGGAAATTACACAAG 57.190 29.630 13.65 0.00 44.81 3.16
2144 3320 9.553064 AGTTTTGCAAATATGGAAATTACACAA 57.447 25.926 13.65 0.00 44.81 3.33
2200 3377 1.069765 ACGAAGTCACCACAGGCAG 59.930 57.895 0.00 0.00 29.74 4.85
2215 3393 8.837788 AGCATCTTATGATTTATGATTGACGA 57.162 30.769 0.00 0.00 0.00 4.20
2219 3397 9.731819 GGCATAGCATCTTATGATTTATGATTG 57.268 33.333 16.45 0.00 33.70 2.67
2220 3398 8.618677 CGGCATAGCATCTTATGATTTATGATT 58.381 33.333 16.45 0.00 33.70 2.57
2221 3399 7.228108 CCGGCATAGCATCTTATGATTTATGAT 59.772 37.037 16.45 0.00 33.70 2.45
2226 3404 4.655963 ACCGGCATAGCATCTTATGATTT 58.344 39.130 0.00 0.00 33.75 2.17
2231 3409 5.012148 AGACTTAACCGGCATAGCATCTTAT 59.988 40.000 0.00 0.00 0.00 1.73
2232 3410 4.344102 AGACTTAACCGGCATAGCATCTTA 59.656 41.667 0.00 0.00 0.00 2.10
2235 3413 3.060602 GAGACTTAACCGGCATAGCATC 58.939 50.000 0.00 0.00 0.00 3.91
2238 3416 2.745102 GAGAGACTTAACCGGCATAGC 58.255 52.381 0.00 0.00 0.00 2.97
2239 3417 2.617308 TCGAGAGACTTAACCGGCATAG 59.383 50.000 0.00 0.00 33.31 2.23
2248 3426 2.626266 TGTGCACCTTCGAGAGACTTAA 59.374 45.455 15.69 0.00 41.84 1.85
2250 3428 1.040646 TGTGCACCTTCGAGAGACTT 58.959 50.000 15.69 0.00 41.84 3.01
2259 3437 3.270877 CACTACCCTTATGTGCACCTTC 58.729 50.000 15.69 0.00 0.00 3.46
2260 3438 2.642807 ACACTACCCTTATGTGCACCTT 59.357 45.455 15.69 4.36 35.33 3.50
2261 3439 2.027192 CACACTACCCTTATGTGCACCT 60.027 50.000 15.69 7.20 37.52 4.00
2263 3441 2.742053 CACACACTACCCTTATGTGCAC 59.258 50.000 10.75 10.75 46.19 4.57
2264 3442 3.052455 CACACACTACCCTTATGTGCA 57.948 47.619 3.60 0.00 46.19 4.57
2267 3445 1.621814 ACGCACACACTACCCTTATGT 59.378 47.619 0.00 0.00 0.00 2.29
2279 3459 0.595095 TAAATGCATGCACGCACACA 59.405 45.000 25.37 0.00 46.56 3.72
2285 3465 5.007039 ACTGACTTCTATAAATGCATGCACG 59.993 40.000 25.37 7.51 0.00 5.34
2303 3483 4.931601 CACATACACAAGCATACACTGACT 59.068 41.667 0.00 0.00 0.00 3.41
2304 3484 4.929211 TCACATACACAAGCATACACTGAC 59.071 41.667 0.00 0.00 0.00 3.51
2305 3485 5.146010 TCACATACACAAGCATACACTGA 57.854 39.130 0.00 0.00 0.00 3.41
2306 3486 4.201753 GCTCACATACACAAGCATACACTG 60.202 45.833 0.00 0.00 34.86 3.66
2328 3508 6.389622 TGCACATAGTATAATCGAATTCGC 57.610 37.500 22.90 7.83 39.60 4.70
2367 3547 9.636965 GCAATGAACTGTTTTCAAAAGAATTAC 57.363 29.630 0.00 0.00 31.55 1.89
2377 3557 7.333921 ACTCAAAATTGCAATGAACTGTTTTCA 59.666 29.630 13.82 0.00 0.00 2.69
2378 3558 7.687445 ACTCAAAATTGCAATGAACTGTTTTC 58.313 30.769 13.82 0.00 0.00 2.29
2379 3559 7.614124 ACTCAAAATTGCAATGAACTGTTTT 57.386 28.000 13.82 5.79 0.00 2.43
2381 3561 8.891671 ATTACTCAAAATTGCAATGAACTGTT 57.108 26.923 13.82 0.00 0.00 3.16
2382 3562 8.143193 TGATTACTCAAAATTGCAATGAACTGT 58.857 29.630 13.82 11.90 0.00 3.55
2388 3568 7.360269 GGTGGTTGATTACTCAAAATTGCAATG 60.360 37.037 13.82 1.94 42.85 2.82
2404 3584 2.242043 CAAGGAGCAAGGTGGTTGATT 58.758 47.619 0.00 0.00 38.60 2.57
2444 3624 7.972832 TTAGTCGGCTGAGATTTAAGAAAAA 57.027 32.000 0.00 0.00 0.00 1.94
2445 3625 7.660208 AGTTTAGTCGGCTGAGATTTAAGAAAA 59.340 33.333 0.00 0.00 0.00 2.29
2446 3626 7.159372 AGTTTAGTCGGCTGAGATTTAAGAAA 58.841 34.615 0.00 0.00 0.00 2.52
2447 3627 6.698380 AGTTTAGTCGGCTGAGATTTAAGAA 58.302 36.000 0.00 0.00 0.00 2.52
2448 3628 6.282199 AGTTTAGTCGGCTGAGATTTAAGA 57.718 37.500 0.00 0.00 0.00 2.10
2449 3629 6.969828 AAGTTTAGTCGGCTGAGATTTAAG 57.030 37.500 0.00 0.00 0.00 1.85
2450 3630 8.715088 GTTAAAGTTTAGTCGGCTGAGATTTAA 58.285 33.333 0.00 4.62 0.00 1.52
2451 3631 7.874016 TGTTAAAGTTTAGTCGGCTGAGATTTA 59.126 33.333 0.00 0.00 0.00 1.40
2452 3632 6.708949 TGTTAAAGTTTAGTCGGCTGAGATTT 59.291 34.615 0.00 0.00 0.00 2.17
2453 3633 6.228258 TGTTAAAGTTTAGTCGGCTGAGATT 58.772 36.000 0.00 0.00 0.00 2.40
2454 3634 5.790593 TGTTAAAGTTTAGTCGGCTGAGAT 58.209 37.500 0.00 0.00 0.00 2.75
2455 3635 5.204409 TGTTAAAGTTTAGTCGGCTGAGA 57.796 39.130 0.00 0.00 0.00 3.27
2456 3636 5.917541 TTGTTAAAGTTTAGTCGGCTGAG 57.082 39.130 0.00 0.00 0.00 3.35
2457 3637 5.761234 ACATTGTTAAAGTTTAGTCGGCTGA 59.239 36.000 0.00 0.00 0.00 4.26
2458 3638 5.997385 ACATTGTTAAAGTTTAGTCGGCTG 58.003 37.500 0.00 0.00 0.00 4.85
2459 3639 5.761234 TGACATTGTTAAAGTTTAGTCGGCT 59.239 36.000 0.00 0.00 0.00 5.52
2460 3640 5.992729 TGACATTGTTAAAGTTTAGTCGGC 58.007 37.500 0.00 0.00 0.00 5.54
2461 3641 8.029642 AGATGACATTGTTAAAGTTTAGTCGG 57.970 34.615 0.00 0.00 0.00 4.79
2462 3642 8.926710 AGAGATGACATTGTTAAAGTTTAGTCG 58.073 33.333 0.00 0.00 0.00 4.18
2467 3647 9.846248 GCAATAGAGATGACATTGTTAAAGTTT 57.154 29.630 0.00 0.00 33.22 2.66
2468 3648 9.013229 TGCAATAGAGATGACATTGTTAAAGTT 57.987 29.630 0.00 0.00 33.22 2.66
2469 3649 8.565896 TGCAATAGAGATGACATTGTTAAAGT 57.434 30.769 0.00 0.00 33.22 2.66
2470 3650 9.661187 GATGCAATAGAGATGACATTGTTAAAG 57.339 33.333 0.00 0.00 33.22 1.85
2471 3651 9.399797 AGATGCAATAGAGATGACATTGTTAAA 57.600 29.630 0.00 0.00 33.22 1.52
2472 3652 8.969260 AGATGCAATAGAGATGACATTGTTAA 57.031 30.769 0.00 0.00 33.22 2.01
2474 3654 8.834465 GTTAGATGCAATAGAGATGACATTGTT 58.166 33.333 0.00 0.00 33.22 2.83
2475 3655 7.443575 GGTTAGATGCAATAGAGATGACATTGT 59.556 37.037 0.00 0.00 33.22 2.71
2476 3656 7.660617 AGGTTAGATGCAATAGAGATGACATTG 59.339 37.037 0.00 0.00 33.69 2.82
2477 3657 7.743749 AGGTTAGATGCAATAGAGATGACATT 58.256 34.615 0.00 0.00 0.00 2.71
2478 3658 7.313740 AGGTTAGATGCAATAGAGATGACAT 57.686 36.000 0.00 0.00 0.00 3.06
2479 3659 6.737720 AGGTTAGATGCAATAGAGATGACA 57.262 37.500 0.00 0.00 0.00 3.58
2480 3660 8.364142 ACTTAGGTTAGATGCAATAGAGATGAC 58.636 37.037 0.00 0.00 0.00 3.06
2481 3661 8.484214 ACTTAGGTTAGATGCAATAGAGATGA 57.516 34.615 0.00 0.00 0.00 2.92
2486 3666 9.817809 CACTTTACTTAGGTTAGATGCAATAGA 57.182 33.333 0.00 0.00 0.00 1.98
2487 3667 9.601217 ACACTTTACTTAGGTTAGATGCAATAG 57.399 33.333 0.00 0.00 0.00 1.73
2488 3668 9.378551 CACACTTTACTTAGGTTAGATGCAATA 57.621 33.333 0.00 0.00 0.00 1.90
2489 3669 8.100791 TCACACTTTACTTAGGTTAGATGCAAT 58.899 33.333 0.00 0.00 0.00 3.56
2490 3670 7.446769 TCACACTTTACTTAGGTTAGATGCAA 58.553 34.615 0.00 0.00 0.00 4.08
2491 3671 6.999950 TCACACTTTACTTAGGTTAGATGCA 58.000 36.000 0.00 0.00 0.00 3.96
2492 3672 7.063544 CACTCACACTTTACTTAGGTTAGATGC 59.936 40.741 0.00 0.00 0.00 3.91
2493 3673 7.545965 CCACTCACACTTTACTTAGGTTAGATG 59.454 40.741 0.00 0.00 0.00 2.90
2494 3674 7.234988 ACCACTCACACTTTACTTAGGTTAGAT 59.765 37.037 0.00 0.00 0.00 1.98
2495 3675 6.552350 ACCACTCACACTTTACTTAGGTTAGA 59.448 38.462 0.00 0.00 0.00 2.10
2496 3676 6.756221 ACCACTCACACTTTACTTAGGTTAG 58.244 40.000 0.00 0.00 0.00 2.34
2497 3677 6.515531 CGACCACTCACACTTTACTTAGGTTA 60.516 42.308 0.00 0.00 0.00 2.85
2498 3678 5.608449 GACCACTCACACTTTACTTAGGTT 58.392 41.667 0.00 0.00 0.00 3.50
2499 3679 4.261909 CGACCACTCACACTTTACTTAGGT 60.262 45.833 0.00 0.00 0.00 3.08
2500 3680 4.235360 CGACCACTCACACTTTACTTAGG 58.765 47.826 0.00 0.00 0.00 2.69
2501 3681 4.235360 CCGACCACTCACACTTTACTTAG 58.765 47.826 0.00 0.00 0.00 2.18
2502 3682 3.638160 ACCGACCACTCACACTTTACTTA 59.362 43.478 0.00 0.00 0.00 2.24
2503 3683 2.433239 ACCGACCACTCACACTTTACTT 59.567 45.455 0.00 0.00 0.00 2.24
2504 3684 2.037144 ACCGACCACTCACACTTTACT 58.963 47.619 0.00 0.00 0.00 2.24
2505 3685 2.132762 CACCGACCACTCACACTTTAC 58.867 52.381 0.00 0.00 0.00 2.01
2506 3686 2.033372 TCACCGACCACTCACACTTTA 58.967 47.619 0.00 0.00 0.00 1.85
2507 3687 0.828022 TCACCGACCACTCACACTTT 59.172 50.000 0.00 0.00 0.00 2.66
2508 3688 0.389391 CTCACCGACCACTCACACTT 59.611 55.000 0.00 0.00 0.00 3.16
2509 3689 1.464376 CCTCACCGACCACTCACACT 61.464 60.000 0.00 0.00 0.00 3.55
2510 3690 1.006102 CCTCACCGACCACTCACAC 60.006 63.158 0.00 0.00 0.00 3.82
2511 3691 1.152631 TCCTCACCGACCACTCACA 60.153 57.895 0.00 0.00 0.00 3.58
2512 3692 0.894184 TCTCCTCACCGACCACTCAC 60.894 60.000 0.00 0.00 0.00 3.51
2513 3693 0.178973 TTCTCCTCACCGACCACTCA 60.179 55.000 0.00 0.00 0.00 3.41
2514 3694 0.528470 CTTCTCCTCACCGACCACTC 59.472 60.000 0.00 0.00 0.00 3.51
2515 3695 0.178958 ACTTCTCCTCACCGACCACT 60.179 55.000 0.00 0.00 0.00 4.00
2516 3696 0.680061 AACTTCTCCTCACCGACCAC 59.320 55.000 0.00 0.00 0.00 4.16
2517 3697 0.966920 GAACTTCTCCTCACCGACCA 59.033 55.000 0.00 0.00 0.00 4.02
2518 3698 0.966920 TGAACTTCTCCTCACCGACC 59.033 55.000 0.00 0.00 0.00 4.79
2519 3699 1.614413 ACTGAACTTCTCCTCACCGAC 59.386 52.381 0.00 0.00 0.00 4.79
2520 3700 1.996798 ACTGAACTTCTCCTCACCGA 58.003 50.000 0.00 0.00 0.00 4.69
2521 3701 2.414293 CGTACTGAACTTCTCCTCACCG 60.414 54.545 0.00 0.00 0.00 4.94
2522 3702 2.818432 TCGTACTGAACTTCTCCTCACC 59.182 50.000 0.00 0.00 0.00 4.02
2523 3703 4.664188 GATCGTACTGAACTTCTCCTCAC 58.336 47.826 0.00 0.00 0.00 3.51
2524 3704 3.374367 CGATCGTACTGAACTTCTCCTCA 59.626 47.826 7.03 0.00 0.00 3.86
2525 3705 3.789459 GCGATCGTACTGAACTTCTCCTC 60.789 52.174 17.81 0.00 0.00 3.71
2526 3706 2.097791 GCGATCGTACTGAACTTCTCCT 59.902 50.000 17.81 0.00 0.00 3.69
2527 3707 2.097791 AGCGATCGTACTGAACTTCTCC 59.902 50.000 17.81 0.00 0.00 3.71
2528 3708 3.408288 AGCGATCGTACTGAACTTCTC 57.592 47.619 17.81 0.00 0.00 2.87
2529 3709 3.242804 GCTAGCGATCGTACTGAACTTCT 60.243 47.826 17.81 3.45 0.00 2.85
2530 3710 3.037324 GCTAGCGATCGTACTGAACTTC 58.963 50.000 17.81 0.00 0.00 3.01
2531 3711 2.223525 GGCTAGCGATCGTACTGAACTT 60.224 50.000 17.81 0.00 0.00 2.66
2532 3712 1.334243 GGCTAGCGATCGTACTGAACT 59.666 52.381 17.81 5.70 0.00 3.01
2533 3713 1.756367 GGCTAGCGATCGTACTGAAC 58.244 55.000 17.81 0.00 0.00 3.18
2534 3714 0.306840 CGGCTAGCGATCGTACTGAA 59.693 55.000 17.81 0.00 0.00 3.02
2535 3715 0.812811 ACGGCTAGCGATCGTACTGA 60.813 55.000 17.81 0.00 35.23 3.41
2536 3716 0.029035 AACGGCTAGCGATCGTACTG 59.971 55.000 17.81 10.93 36.01 2.74
2537 3717 1.530293 CTAACGGCTAGCGATCGTACT 59.470 52.381 17.81 8.73 36.01 2.73
2538 3718 1.528586 TCTAACGGCTAGCGATCGTAC 59.471 52.381 17.81 0.13 36.01 3.67
2539 3719 1.869774 TCTAACGGCTAGCGATCGTA 58.130 50.000 17.81 7.07 36.01 3.43
2540 3720 1.197264 GATCTAACGGCTAGCGATCGT 59.803 52.381 17.81 10.20 38.89 3.73
2541 3721 1.466024 GGATCTAACGGCTAGCGATCG 60.466 57.143 11.69 11.69 33.15 3.69
2542 3722 1.540267 TGGATCTAACGGCTAGCGATC 59.460 52.381 16.74 16.74 0.00 3.69
2543 3723 1.617322 TGGATCTAACGGCTAGCGAT 58.383 50.000 9.00 5.15 0.00 4.58
2544 3724 1.617322 ATGGATCTAACGGCTAGCGA 58.383 50.000 9.00 0.00 0.00 4.93
2545 3725 2.440539 AATGGATCTAACGGCTAGCG 57.559 50.000 9.00 6.83 0.00 4.26
2546 3726 3.877508 ACAAAATGGATCTAACGGCTAGC 59.122 43.478 6.04 6.04 0.00 3.42
2547 3727 6.436843 AAACAAAATGGATCTAACGGCTAG 57.563 37.500 0.00 0.00 0.00 3.42
2548 3728 6.431543 TCAAAACAAAATGGATCTAACGGCTA 59.568 34.615 0.00 0.00 0.00 3.93
2549 3729 5.242838 TCAAAACAAAATGGATCTAACGGCT 59.757 36.000 0.00 0.00 0.00 5.52
2550 3730 5.465935 TCAAAACAAAATGGATCTAACGGC 58.534 37.500 0.00 0.00 0.00 5.68
2551 3731 6.092748 CCTCAAAACAAAATGGATCTAACGG 58.907 40.000 0.00 0.00 0.00 4.44
2552 3732 6.677913 ACCTCAAAACAAAATGGATCTAACG 58.322 36.000 0.00 0.00 0.00 3.18
2553 3733 8.360390 AGAACCTCAAAACAAAATGGATCTAAC 58.640 33.333 0.00 0.00 0.00 2.34
2554 3734 8.477419 AGAACCTCAAAACAAAATGGATCTAA 57.523 30.769 0.00 0.00 0.00 2.10
2555 3735 7.723616 TGAGAACCTCAAAACAAAATGGATCTA 59.276 33.333 0.00 0.00 37.57 1.98
2556 3736 6.550854 TGAGAACCTCAAAACAAAATGGATCT 59.449 34.615 0.00 0.00 37.57 2.75
2557 3737 6.748132 TGAGAACCTCAAAACAAAATGGATC 58.252 36.000 0.00 0.00 37.57 3.36
2558 3738 6.729690 TGAGAACCTCAAAACAAAATGGAT 57.270 33.333 0.00 0.00 37.57 3.41
2559 3739 6.462768 CCATGAGAACCTCAAAACAAAATGGA 60.463 38.462 0.00 0.00 44.04 3.41
2560 3740 5.697633 CCATGAGAACCTCAAAACAAAATGG 59.302 40.000 0.00 0.00 44.04 3.16
2561 3741 6.514947 TCCATGAGAACCTCAAAACAAAATG 58.485 36.000 0.00 0.00 44.04 2.32
2562 3742 6.729690 TCCATGAGAACCTCAAAACAAAAT 57.270 33.333 0.00 0.00 44.04 1.82
2563 3743 6.514947 CATCCATGAGAACCTCAAAACAAAA 58.485 36.000 0.00 0.00 44.04 2.44
2564 3744 5.509501 GCATCCATGAGAACCTCAAAACAAA 60.510 40.000 0.00 0.00 44.04 2.83
2565 3745 4.022068 GCATCCATGAGAACCTCAAAACAA 60.022 41.667 0.00 0.00 44.04 2.83
2566 3746 3.507233 GCATCCATGAGAACCTCAAAACA 59.493 43.478 0.00 0.00 44.04 2.83
2567 3747 3.760684 AGCATCCATGAGAACCTCAAAAC 59.239 43.478 0.00 0.00 44.04 2.43
2568 3748 4.038271 AGCATCCATGAGAACCTCAAAA 57.962 40.909 0.00 0.00 44.04 2.44
2569 3749 3.726557 AGCATCCATGAGAACCTCAAA 57.273 42.857 0.00 0.00 44.04 2.69
2570 3750 3.776969 AGTAGCATCCATGAGAACCTCAA 59.223 43.478 0.00 0.00 44.04 3.02
2571 3751 3.378512 AGTAGCATCCATGAGAACCTCA 58.621 45.455 0.00 0.00 44.99 3.86
2572 3752 3.244044 GGAGTAGCATCCATGAGAACCTC 60.244 52.174 0.00 0.00 39.34 3.85
2573 3753 2.703007 GGAGTAGCATCCATGAGAACCT 59.297 50.000 0.00 0.00 39.34 3.50
2574 3754 2.224402 GGGAGTAGCATCCATGAGAACC 60.224 54.545 0.00 0.00 41.52 3.62
2575 3755 2.703007 AGGGAGTAGCATCCATGAGAAC 59.297 50.000 0.00 0.00 41.52 3.01
2576 3756 3.051940 AGGGAGTAGCATCCATGAGAA 57.948 47.619 0.00 0.00 41.52 2.87
2577 3757 2.783379 AGGGAGTAGCATCCATGAGA 57.217 50.000 0.00 0.00 41.52 3.27
2578 3758 2.288702 CGAAGGGAGTAGCATCCATGAG 60.289 54.545 0.00 0.00 41.52 2.90
2579 3759 1.688735 CGAAGGGAGTAGCATCCATGA 59.311 52.381 0.00 0.00 41.52 3.07
2580 3760 1.414181 ACGAAGGGAGTAGCATCCATG 59.586 52.381 5.17 0.00 41.52 3.66
2581 3761 1.794714 ACGAAGGGAGTAGCATCCAT 58.205 50.000 5.17 0.00 41.52 3.41
2582 3762 1.480954 GAACGAAGGGAGTAGCATCCA 59.519 52.381 5.17 0.00 41.52 3.41
2583 3763 1.202545 GGAACGAAGGGAGTAGCATCC 60.203 57.143 0.00 0.00 38.76 3.51
2584 3764 1.202545 GGGAACGAAGGGAGTAGCATC 60.203 57.143 0.00 0.00 0.00 3.91
2585 3765 0.831307 GGGAACGAAGGGAGTAGCAT 59.169 55.000 0.00 0.00 0.00 3.79
2586 3766 0.543410 TGGGAACGAAGGGAGTAGCA 60.543 55.000 0.00 0.00 0.00 3.49
2587 3767 0.611714 TTGGGAACGAAGGGAGTAGC 59.388 55.000 0.00 0.00 0.00 3.58
2588 3768 3.629142 ATTTGGGAACGAAGGGAGTAG 57.371 47.619 0.00 0.00 37.08 2.57
2589 3769 6.384886 ACTTATATTTGGGAACGAAGGGAGTA 59.615 38.462 0.00 0.00 37.08 2.59
2590 3770 5.191124 ACTTATATTTGGGAACGAAGGGAGT 59.809 40.000 0.00 0.00 37.08 3.85
2591 3771 5.681639 ACTTATATTTGGGAACGAAGGGAG 58.318 41.667 0.00 0.00 37.08 4.30
2592 3772 5.427481 AGACTTATATTTGGGAACGAAGGGA 59.573 40.000 0.00 0.00 37.08 4.20
2593 3773 5.681639 AGACTTATATTTGGGAACGAAGGG 58.318 41.667 0.00 0.00 37.08 3.95
2594 3774 7.625828 AAAGACTTATATTTGGGAACGAAGG 57.374 36.000 0.00 0.00 37.08 3.46
2597 3777 9.947433 TCTAAAAAGACTTATATTTGGGAACGA 57.053 29.630 0.00 0.00 0.00 3.85
2610 3790 9.457436 ACTTGTTGAAACCTCTAAAAAGACTTA 57.543 29.630 0.00 0.00 0.00 2.24
2611 3791 8.349568 ACTTGTTGAAACCTCTAAAAAGACTT 57.650 30.769 0.00 0.00 0.00 3.01
2612 3792 7.939784 ACTTGTTGAAACCTCTAAAAAGACT 57.060 32.000 0.00 0.00 0.00 3.24
2613 3793 9.499585 GTTACTTGTTGAAACCTCTAAAAAGAC 57.500 33.333 0.00 0.00 0.00 3.01
2614 3794 9.457436 AGTTACTTGTTGAAACCTCTAAAAAGA 57.543 29.630 0.00 0.00 0.00 2.52
2617 3797 9.669887 TGTAGTTACTTGTTGAAACCTCTAAAA 57.330 29.630 0.00 0.00 0.00 1.52
2618 3798 9.841295 ATGTAGTTACTTGTTGAAACCTCTAAA 57.159 29.630 0.00 0.00 0.00 1.85
2620 3800 9.918630 GTATGTAGTTACTTGTTGAAACCTCTA 57.081 33.333 0.00 0.00 0.00 2.43
2621 3801 7.597743 CGTATGTAGTTACTTGTTGAAACCTCT 59.402 37.037 0.00 0.00 0.00 3.69
2622 3802 7.148689 CCGTATGTAGTTACTTGTTGAAACCTC 60.149 40.741 0.00 0.00 0.00 3.85
2623 3803 6.647895 CCGTATGTAGTTACTTGTTGAAACCT 59.352 38.462 0.00 0.00 0.00 3.50
2624 3804 6.646240 TCCGTATGTAGTTACTTGTTGAAACC 59.354 38.462 0.00 0.00 0.00 3.27
2625 3805 7.620806 GCTCCGTATGTAGTTACTTGTTGAAAC 60.621 40.741 0.00 0.00 0.00 2.78
2626 3806 6.366877 GCTCCGTATGTAGTTACTTGTTGAAA 59.633 38.462 0.00 0.00 0.00 2.69
2627 3807 5.865552 GCTCCGTATGTAGTTACTTGTTGAA 59.134 40.000 0.00 0.00 0.00 2.69
2628 3808 5.047872 TGCTCCGTATGTAGTTACTTGTTGA 60.048 40.000 0.00 0.00 0.00 3.18
2629 3809 5.165676 TGCTCCGTATGTAGTTACTTGTTG 58.834 41.667 0.00 0.00 0.00 3.33
2630 3810 5.395682 TGCTCCGTATGTAGTTACTTGTT 57.604 39.130 0.00 0.00 0.00 2.83
2631 3811 5.395682 TTGCTCCGTATGTAGTTACTTGT 57.604 39.130 0.00 0.00 0.00 3.16
2632 3812 6.715344 TTTTGCTCCGTATGTAGTTACTTG 57.285 37.500 0.00 0.00 0.00 3.16
2633 3813 7.101054 TCATTTTGCTCCGTATGTAGTTACTT 58.899 34.615 0.00 0.00 0.00 2.24
2634 3814 6.636705 TCATTTTGCTCCGTATGTAGTTACT 58.363 36.000 0.00 0.00 0.00 2.24
2635 3815 6.897259 TCATTTTGCTCCGTATGTAGTTAC 57.103 37.500 0.00 0.00 0.00 2.50
2636 3816 7.766738 TCATTCATTTTGCTCCGTATGTAGTTA 59.233 33.333 0.00 0.00 0.00 2.24
2637 3817 6.597672 TCATTCATTTTGCTCCGTATGTAGTT 59.402 34.615 0.00 0.00 0.00 2.24
2638 3818 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2639 3819 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2640 3820 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2641 3821 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2642 3822 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2643 3823 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2644 3824 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2645 3825 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2646 3826 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2647 3827 6.749118 GTGTGTAGATTCATTCATTTTGCTCC 59.251 38.462 0.00 0.00 0.00 4.70
2648 3828 7.307694 TGTGTGTAGATTCATTCATTTTGCTC 58.692 34.615 0.00 0.00 0.00 4.26
2649 3829 7.218228 TGTGTGTAGATTCATTCATTTTGCT 57.782 32.000 0.00 0.00 0.00 3.91
2650 3830 7.872163 TTGTGTGTAGATTCATTCATTTTGC 57.128 32.000 0.00 0.00 0.00 3.68
2682 3862 9.392259 CAACATACGGATGTAGGAGTATATAGA 57.608 37.037 15.10 0.00 45.93 1.98
2683 3863 9.175312 ACAACATACGGATGTAGGAGTATATAG 57.825 37.037 15.10 0.00 45.93 1.31
2685 3865 9.175312 CTACAACATACGGATGTAGGAGTATAT 57.825 37.037 15.10 0.00 45.93 0.86
2686 3866 8.159447 ACTACAACATACGGATGTAGGAGTATA 58.841 37.037 15.10 0.00 45.93 1.47
2687 3867 7.002879 ACTACAACATACGGATGTAGGAGTAT 58.997 38.462 15.10 0.00 45.93 2.12
2688 3868 6.359804 ACTACAACATACGGATGTAGGAGTA 58.640 40.000 15.10 13.13 45.93 2.59
2689 3869 5.198965 ACTACAACATACGGATGTAGGAGT 58.801 41.667 15.10 13.84 45.93 3.85
2690 3870 5.278364 GGACTACAACATACGGATGTAGGAG 60.278 48.000 15.10 13.20 45.93 3.69
2691 3871 4.581824 GGACTACAACATACGGATGTAGGA 59.418 45.833 15.10 0.81 45.93 2.94
2692 3872 4.340097 TGGACTACAACATACGGATGTAGG 59.660 45.833 15.10 12.10 45.93 3.18
2693 3873 5.509716 TGGACTACAACATACGGATGTAG 57.490 43.478 15.10 10.64 45.93 2.74
2694 3874 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
2696 3876 7.780008 TTAAATGGACTACAACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
2697 3877 8.974060 ATTTAAATGGACTACAACATACGGAT 57.026 30.769 0.00 0.00 0.00 4.18
2698 3878 8.262227 AGATTTAAATGGACTACAACATACGGA 58.738 33.333 5.17 0.00 0.00 4.69
2699 3879 8.433421 AGATTTAAATGGACTACAACATACGG 57.567 34.615 5.17 0.00 0.00 4.02
2727 3907 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2728 3908 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
2729 3909 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
2730 3910 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
2731 3911 7.471679 GCTTCCTCCGTTCCTAAATATAAGTCT 60.472 40.741 0.00 0.00 0.00 3.24
2732 3912 6.645827 GCTTCCTCCGTTCCTAAATATAAGTC 59.354 42.308 0.00 0.00 0.00 3.01
2733 3913 6.099269 TGCTTCCTCCGTTCCTAAATATAAGT 59.901 38.462 0.00 0.00 0.00 2.24
2734 3914 6.522054 TGCTTCCTCCGTTCCTAAATATAAG 58.478 40.000 0.00 0.00 0.00 1.73
2735 3915 6.099269 ACTGCTTCCTCCGTTCCTAAATATAA 59.901 38.462 0.00 0.00 0.00 0.98
2736 3916 5.601313 ACTGCTTCCTCCGTTCCTAAATATA 59.399 40.000 0.00 0.00 0.00 0.86
2737 3917 4.409247 ACTGCTTCCTCCGTTCCTAAATAT 59.591 41.667 0.00 0.00 0.00 1.28
2738 3918 3.773119 ACTGCTTCCTCCGTTCCTAAATA 59.227 43.478 0.00 0.00 0.00 1.40
2739 3919 2.572104 ACTGCTTCCTCCGTTCCTAAAT 59.428 45.455 0.00 0.00 0.00 1.40
2740 3920 1.975680 ACTGCTTCCTCCGTTCCTAAA 59.024 47.619 0.00 0.00 0.00 1.85
2741 3921 1.640917 ACTGCTTCCTCCGTTCCTAA 58.359 50.000 0.00 0.00 0.00 2.69
2742 3922 1.640917 AACTGCTTCCTCCGTTCCTA 58.359 50.000 0.00 0.00 0.00 2.94
2743 3923 0.765510 AAACTGCTTCCTCCGTTCCT 59.234 50.000 0.00 0.00 0.00 3.36
2744 3924 1.605753 AAAACTGCTTCCTCCGTTCC 58.394 50.000 0.00 0.00 0.00 3.62
2764 3944 1.132262 GCATGCGGATTCTCGGAAAAA 59.868 47.619 0.00 0.00 33.58 1.94
2765 3945 0.732571 GCATGCGGATTCTCGGAAAA 59.267 50.000 0.00 0.00 33.58 2.29
2766 3946 0.392327 TGCATGCGGATTCTCGGAAA 60.392 50.000 14.09 0.00 33.58 3.13
2767 3947 0.811219 CTGCATGCGGATTCTCGGAA 60.811 55.000 22.55 0.00 33.58 4.30
2768 3948 1.227350 CTGCATGCGGATTCTCGGA 60.227 57.895 22.55 0.00 34.52 4.55
2769 3949 2.249535 CCTGCATGCGGATTCTCGG 61.250 63.158 28.32 5.15 0.00 4.63
2770 3950 2.249535 CCCTGCATGCGGATTCTCG 61.250 63.158 28.32 9.59 0.00 4.04
2771 3951 0.106708 TACCCTGCATGCGGATTCTC 59.893 55.000 28.32 0.00 0.00 2.87
2772 3952 0.107456 CTACCCTGCATGCGGATTCT 59.893 55.000 28.32 9.01 0.00 2.40
2773 3953 0.179045 ACTACCCTGCATGCGGATTC 60.179 55.000 28.32 0.00 0.00 2.52
2774 3954 0.179045 GACTACCCTGCATGCGGATT 60.179 55.000 28.32 15.74 0.00 3.01
2775 3955 1.447643 GACTACCCTGCATGCGGAT 59.552 57.895 28.32 17.22 0.00 4.18
2776 3956 2.900273 GACTACCCTGCATGCGGA 59.100 61.111 28.32 7.18 0.00 5.54
2777 3957 2.586079 CGACTACCCTGCATGCGG 60.586 66.667 20.13 20.13 0.00 5.69
2778 3958 2.586079 CCGACTACCCTGCATGCG 60.586 66.667 14.09 7.87 0.00 4.73
2779 3959 2.203070 CCCGACTACCCTGCATGC 60.203 66.667 11.82 11.82 0.00 4.06
2780 3960 2.505982 CCCCGACTACCCTGCATG 59.494 66.667 0.00 0.00 0.00 4.06
2781 3961 2.768344 CCCCCGACTACCCTGCAT 60.768 66.667 0.00 0.00 0.00 3.96
2800 3980 3.129502 CACATGCTGGGTGCGAGG 61.130 66.667 0.00 0.00 46.63 4.63
2801 3981 3.129502 CCACATGCTGGGTGCGAG 61.130 66.667 6.46 0.00 46.63 5.03
2808 3988 2.681064 CCCCAACCCACATGCTGG 60.681 66.667 7.20 7.20 40.26 4.85
2809 3989 3.384532 GCCCCAACCCACATGCTG 61.385 66.667 0.00 0.00 0.00 4.41
2810 3990 4.702274 GGCCCCAACCCACATGCT 62.702 66.667 0.00 0.00 0.00 3.79
2869 4049 1.952296 CTAGCTTTGCTGCCCTATTGG 59.048 52.381 0.00 0.00 40.10 3.16
2870 4050 1.336125 GCTAGCTTTGCTGCCCTATTG 59.664 52.381 7.70 0.00 40.10 1.90
2871 4051 1.685148 GCTAGCTTTGCTGCCCTATT 58.315 50.000 7.70 0.00 40.10 1.73
2872 4052 0.179006 GGCTAGCTTTGCTGCCCTAT 60.179 55.000 15.72 0.00 42.54 2.57
2873 4053 1.224592 GGCTAGCTTTGCTGCCCTA 59.775 57.895 15.72 0.00 42.54 3.53
2874 4054 1.274703 TAGGCTAGCTTTGCTGCCCT 61.275 55.000 15.72 17.48 46.25 5.19
2875 4055 1.098129 GTAGGCTAGCTTTGCTGCCC 61.098 60.000 15.72 12.86 46.25 5.36
2876 4056 0.392998 TGTAGGCTAGCTTTGCTGCC 60.393 55.000 15.72 18.36 45.82 4.85
2877 4057 0.729690 GTGTAGGCTAGCTTTGCTGC 59.270 55.000 15.72 7.25 40.10 5.25
2878 4058 1.373570 GGTGTAGGCTAGCTTTGCTG 58.626 55.000 15.72 0.00 40.10 4.41
2879 4059 0.253327 GGGTGTAGGCTAGCTTTGCT 59.747 55.000 15.72 5.54 43.41 3.91
2880 4060 0.035439 TGGGTGTAGGCTAGCTTTGC 60.035 55.000 15.72 7.73 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.