Multiple sequence alignment - TraesCS1D01G036800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G036800 chr1D 100.000 2522 0 0 1 2522 17194966 17192445 0.000000e+00 4658
1 TraesCS1D01G036800 chr1B 87.958 2101 136 43 284 2300 24989791 24987724 0.000000e+00 2370
2 TraesCS1D01G036800 chr1A 92.436 1560 65 16 1 1531 18488022 18486487 0.000000e+00 2178
3 TraesCS1D01G036800 chr1A 85.714 1071 93 29 1491 2522 18486472 18485423 0.000000e+00 1075
4 TraesCS1D01G036800 chr5B 87.805 574 59 9 1001 1570 612015077 612014511 0.000000e+00 662
5 TraesCS1D01G036800 chr3D 85.185 594 84 2 1001 1594 438604264 438603675 7.720000e-170 606
6 TraesCS1D01G036800 chr5D 86.727 550 61 8 1024 1570 495373539 495372999 3.590000e-168 601
7 TraesCS1D01G036800 chr5A 83.079 656 74 16 943 1594 619476694 619476072 1.690000e-156 562


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G036800 chr1D 17192445 17194966 2521 True 4658.0 4658 100.000 1 2522 1 chr1D.!!$R1 2521
1 TraesCS1D01G036800 chr1B 24987724 24989791 2067 True 2370.0 2370 87.958 284 2300 1 chr1B.!!$R1 2016
2 TraesCS1D01G036800 chr1A 18485423 18488022 2599 True 1626.5 2178 89.075 1 2522 2 chr1A.!!$R1 2521
3 TraesCS1D01G036800 chr5B 612014511 612015077 566 True 662.0 662 87.805 1001 1570 1 chr5B.!!$R1 569
4 TraesCS1D01G036800 chr3D 438603675 438604264 589 True 606.0 606 85.185 1001 1594 1 chr3D.!!$R1 593
5 TraesCS1D01G036800 chr5D 495372999 495373539 540 True 601.0 601 86.727 1024 1570 1 chr5D.!!$R1 546
6 TraesCS1D01G036800 chr5A 619476072 619476694 622 True 562.0 562 83.079 943 1594 1 chr5A.!!$R1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 345 0.035056 CCCCGAAAAGGCTCAGATGT 60.035 55.0 0.0 0.0 39.21 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2148 0.107831 TCCGCACAAAGCCTACAGTT 59.892 50.0 0.0 0.0 41.38 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 177 1.203287 GCTTCAGTTTCCCCATCTTGC 59.797 52.381 0.00 0.00 0.00 4.01
184 185 2.905415 TCCCCATCTTGCAGTTGATT 57.095 45.000 0.00 0.00 0.00 2.57
187 188 2.165030 CCCCATCTTGCAGTTGATTCAC 59.835 50.000 0.00 0.00 0.00 3.18
218 219 0.605319 AAGCGCCGGAGATGAACAAA 60.605 50.000 10.31 0.00 0.00 2.83
222 223 2.276201 CGCCGGAGATGAACAAATGTA 58.724 47.619 5.05 0.00 0.00 2.29
247 248 4.437930 GCTGCTAGTTTTGTAATCCTGCAG 60.438 45.833 6.78 6.78 45.38 4.41
264 265 2.622942 TGCAGTTTTTAGTTCAGGCTGG 59.377 45.455 15.73 0.00 0.00 4.85
277 278 0.995675 AGGCTGGGATTAGTGGCCAT 60.996 55.000 9.72 0.00 44.60 4.40
344 345 0.035056 CCCCGAAAAGGCTCAGATGT 60.035 55.000 0.00 0.00 39.21 3.06
353 354 0.615331 GGCTCAGATGTCCTTCACCA 59.385 55.000 0.00 0.00 0.00 4.17
462 472 4.601084 CCTCTAGGACTCAAGTGACCTTA 58.399 47.826 0.00 0.00 37.39 2.69
469 479 7.554959 AGGACTCAAGTGACCTTATTTCTAA 57.445 36.000 0.00 0.00 0.00 2.10
499 527 0.108898 CGAGCAGTTCTCTGTCCAGG 60.109 60.000 0.00 0.00 43.05 4.45
570 598 2.642154 TCACGTGGTATGGGTTTGTT 57.358 45.000 17.00 0.00 0.00 2.83
655 693 4.741676 GCTTAACGCTTAGCTAAATCCGTA 59.258 41.667 19.99 9.87 35.14 4.02
678 716 4.637977 AGGCTCTCTTTACTTTGCTTATGC 59.362 41.667 0.00 0.00 40.20 3.14
711 749 7.103641 GTGTTTGATAAAGTCCCTCTGTGATA 58.896 38.462 0.00 0.00 0.00 2.15
715 753 5.598830 TGATAAAGTCCCTCTGTGATAGACC 59.401 44.000 0.00 0.00 0.00 3.85
840 878 2.987413 TACCATTTGCAGCAACTTCG 57.013 45.000 7.54 0.00 0.00 3.79
852 890 1.064060 GCAACTTCGCTGTGTTCTGTT 59.936 47.619 0.00 0.00 0.00 3.16
911 950 7.440523 TGTTGGAGAGAGAAAAATAGAAAGC 57.559 36.000 0.00 0.00 0.00 3.51
936 979 1.066573 ACACGCTATGCTCTTCTTGCT 60.067 47.619 0.00 0.00 0.00 3.91
1062 1105 8.012957 ACGTGAGGTATGATCTTAAAGAGATT 57.987 34.615 0.00 0.00 45.17 2.40
1610 1733 3.082548 TCAGAAGTCGGGTAGAACAGAG 58.917 50.000 0.00 0.00 0.00 3.35
1612 1735 3.697045 CAGAAGTCGGGTAGAACAGAGAT 59.303 47.826 0.00 0.00 0.00 2.75
1619 1742 2.362397 GGGTAGAACAGAGATCGATGCA 59.638 50.000 0.54 0.00 0.00 3.96
1637 1760 5.237127 CGATGCACTGCTCATTTCCTAAATA 59.763 40.000 1.98 0.00 0.00 1.40
1638 1761 6.238456 CGATGCACTGCTCATTTCCTAAATAA 60.238 38.462 1.98 0.00 0.00 1.40
1662 1785 5.358298 AAAAATCTTCGTGAGTAGGTTGC 57.642 39.130 0.00 0.00 31.86 4.17
1663 1786 3.963428 AATCTTCGTGAGTAGGTTGCT 57.037 42.857 0.00 0.00 30.18 3.91
1667 1790 1.324383 TCGTGAGTAGGTTGCTGACA 58.676 50.000 0.00 0.00 0.00 3.58
1686 1809 4.406649 TGACATTGTCCATCTGCTGATCTA 59.593 41.667 14.05 0.00 0.00 1.98
1687 1810 5.071384 TGACATTGTCCATCTGCTGATCTAT 59.929 40.000 14.05 0.00 0.00 1.98
1697 1820 7.038516 TCCATCTGCTGATCTATGTTATGTGAT 60.039 37.037 2.65 0.00 0.00 3.06
1765 1888 2.159179 TCCCTTCTCCATCGACATCA 57.841 50.000 0.00 0.00 0.00 3.07
1771 1894 4.877823 CCTTCTCCATCGACATCAAAATCA 59.122 41.667 0.00 0.00 0.00 2.57
1784 1907 3.343617 TCAAAATCAACGCCTTCTAGGG 58.656 45.455 0.00 0.00 35.37 3.53
1808 1931 1.337703 TGTGCTTGCCTTGTTTGCTAG 59.662 47.619 0.00 0.00 35.17 3.42
1824 1950 3.550820 TGCTAGAACAGAAACAAAGGCA 58.449 40.909 0.00 0.00 0.00 4.75
1842 1968 4.154942 AGGCACATCCTGTCATTTTCTTT 58.845 39.130 0.00 0.00 45.54 2.52
1847 1973 6.570957 GCACATCCTGTCATTTTCTTTGATGA 60.571 38.462 0.00 0.00 34.11 2.92
1877 2003 4.812476 TGCGCCCTTGATCGTCGG 62.812 66.667 4.18 0.00 0.00 4.79
1879 2005 2.125673 CGCCCTTGATCGTCGGTT 60.126 61.111 0.00 0.00 0.00 4.44
1946 2076 1.269448 ACTGTTGCCGGCTTATTTGTG 59.731 47.619 29.70 11.60 0.00 3.33
1957 2087 4.669197 CGGCTTATTTGTGTGTCTGCTTAC 60.669 45.833 0.00 0.00 0.00 2.34
1966 2096 4.058124 GTGTGTCTGCTTACTTGTGATGA 58.942 43.478 0.00 0.00 0.00 2.92
1993 2124 5.414360 GTCTCTGATCTTGTTCATGTGCTA 58.586 41.667 0.00 0.00 0.00 3.49
2002 2133 2.162681 GTTCATGTGCTACTGGCCTTT 58.837 47.619 3.32 0.00 40.92 3.11
2013 2144 4.323257 GCTACTGGCCTTTAGTTAGGTGAA 60.323 45.833 3.32 0.00 37.63 3.18
2014 2145 4.287766 ACTGGCCTTTAGTTAGGTGAAG 57.712 45.455 3.32 0.00 37.63 3.02
2017 2148 3.649023 TGGCCTTTAGTTAGGTGAAGTGA 59.351 43.478 3.32 0.00 37.63 3.41
2022 2153 6.289064 CCTTTAGTTAGGTGAAGTGAACTGT 58.711 40.000 0.00 0.00 34.15 3.55
2034 2165 1.069906 GTGAACTGTAGGCTTTGTGCG 60.070 52.381 0.00 0.00 44.05 5.34
2050 2195 0.037734 TGCGGAGTACAGAGGTCTGA 59.962 55.000 13.99 0.00 46.59 3.27
2070 2215 9.256228 GGTCTGACATACCATATCCTCTAATTA 57.744 37.037 10.38 0.00 36.96 1.40
2158 2329 3.335579 GTCGCCATATAGTCCCCAAATC 58.664 50.000 0.00 0.00 0.00 2.17
2162 2333 5.104941 TCGCCATATAGTCCCCAAATCTATG 60.105 44.000 0.00 0.00 0.00 2.23
2169 2340 3.142174 GTCCCCAAATCTATGTAGCAGC 58.858 50.000 0.00 0.00 0.00 5.25
2173 2344 3.562973 CCCAAATCTATGTAGCAGCACAG 59.437 47.826 0.00 0.00 0.00 3.66
2213 2384 3.435671 GCTTAGTCGTGGTTGCTGTAAAT 59.564 43.478 0.00 0.00 0.00 1.40
2226 2397 4.751060 TGCTGTAAATGGTAGGTCTAACG 58.249 43.478 0.00 0.00 0.00 3.18
2268 2439 3.109592 AAACGACAAGCCACCGGGA 62.110 57.895 6.32 0.00 35.59 5.14
2269 2440 3.530910 AACGACAAGCCACCGGGAG 62.531 63.158 6.32 0.00 35.59 4.30
2302 2473 1.005037 CTGTACCTCAACCGCAGCA 60.005 57.895 0.00 0.00 0.00 4.41
2341 2512 2.749441 GTCCTTGCAGCAGGAGGC 60.749 66.667 7.42 0.00 44.11 4.70
2351 2522 1.077429 GCAGGAGGCCTAGGGTTTG 60.077 63.158 4.42 0.00 36.11 2.93
2354 2525 0.921256 AGGAGGCCTAGGGTTTGCAT 60.921 55.000 4.42 0.00 28.47 3.96
2357 2528 2.179427 GAGGCCTAGGGTTTGCATTTT 58.821 47.619 4.42 0.00 0.00 1.82
2364 2535 5.569428 GCCTAGGGTTTGCATTTTGAATCTT 60.569 40.000 11.72 0.00 0.00 2.40
2365 2536 5.870978 CCTAGGGTTTGCATTTTGAATCTTG 59.129 40.000 0.00 0.00 0.00 3.02
2366 2537 5.549742 AGGGTTTGCATTTTGAATCTTGA 57.450 34.783 0.00 0.00 0.00 3.02
2367 2538 5.927819 AGGGTTTGCATTTTGAATCTTGAA 58.072 33.333 0.00 0.00 0.00 2.69
2368 2539 5.993441 AGGGTTTGCATTTTGAATCTTGAAG 59.007 36.000 0.00 0.00 0.00 3.02
2428 2601 2.880879 CGTGGCGGTCACATCTCG 60.881 66.667 13.79 0.00 46.36 4.04
2431 2604 1.080093 TGGCGGTCACATCTCGAAC 60.080 57.895 0.00 0.00 0.00 3.95
2433 2606 1.215647 GCGGTCACATCTCGAACCT 59.784 57.895 0.57 0.00 0.00 3.50
2486 2660 3.000727 GTCGAGTGTGATTAACCCAAGG 58.999 50.000 0.00 0.00 0.00 3.61
2494 2668 4.021544 TGTGATTAACCCAAGGAATTGTGC 60.022 41.667 0.00 0.00 0.00 4.57
2499 2673 3.182887 ACCCAAGGAATTGTGCCATTA 57.817 42.857 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 177 2.740981 GACAGAGCCAGTGAATCAACTG 59.259 50.000 0.00 0.00 45.93 3.16
184 185 0.528017 CGCTTAGACAGAGCCAGTGA 59.472 55.000 0.00 0.00 36.81 3.41
187 188 4.100981 GCGCTTAGACAGAGCCAG 57.899 61.111 0.00 0.00 42.30 4.85
205 206 4.787563 GCAGCATACATTTGTTCATCTCCG 60.788 45.833 0.00 0.00 0.00 4.63
218 219 7.012704 CAGGATTACAAAACTAGCAGCATACAT 59.987 37.037 0.00 0.00 0.00 2.29
222 223 4.096984 GCAGGATTACAAAACTAGCAGCAT 59.903 41.667 0.00 0.00 0.00 3.79
247 248 5.710567 ACTAATCCCAGCCTGAACTAAAAAC 59.289 40.000 0.00 0.00 0.00 2.43
264 265 1.148273 TCCGCATGGCCACTAATCC 59.852 57.895 8.16 0.00 34.14 3.01
277 278 2.680352 GGGAGAGGACTGTCCGCA 60.680 66.667 28.38 0.00 43.39 5.69
286 287 2.224159 GGGTGCAAGTGGGAGAGGA 61.224 63.158 0.00 0.00 0.00 3.71
344 345 0.615331 GGAGCAGTGATGGTGAAGGA 59.385 55.000 0.00 0.00 0.00 3.36
353 354 0.636101 AGGAGGAGAGGAGCAGTGAT 59.364 55.000 0.00 0.00 0.00 3.06
431 432 3.138798 TCCTAGAGGCACCGTCGC 61.139 66.667 0.00 0.00 34.44 5.19
462 472 4.081087 TGCTCGGGAAGTAAGCTTAGAAAT 60.081 41.667 6.38 0.00 36.96 2.17
469 479 0.977395 AACTGCTCGGGAAGTAAGCT 59.023 50.000 0.00 0.00 36.96 3.74
499 527 2.966050 CTGGAAGTGTAGGCTCAGTTC 58.034 52.381 18.38 18.38 43.18 3.01
547 575 4.850680 ACAAACCCATACCACGTGAATAT 58.149 39.130 19.30 11.61 0.00 1.28
570 598 6.296803 TGGACGCTCTCTTATACAGAAGATA 58.703 40.000 0.00 0.00 34.95 1.98
655 693 4.637977 GCATAAGCAAAGTAAAGAGAGCCT 59.362 41.667 0.00 0.00 41.58 4.58
678 716 4.321230 GGACTTTATCAAACACCTTGCCTG 60.321 45.833 0.00 0.00 34.76 4.85
840 878 7.702348 AGAAAAGACAATAAAACAGAACACAGC 59.298 33.333 0.00 0.00 0.00 4.40
898 936 6.379386 AGCGTGTTAAGGCTTTCTATTTTTC 58.621 36.000 4.45 0.00 45.01 2.29
905 944 2.678336 GCATAGCGTGTTAAGGCTTTCT 59.322 45.455 4.45 0.00 45.01 2.52
911 950 3.786635 AGAAGAGCATAGCGTGTTAAGG 58.213 45.455 0.00 0.00 0.00 2.69
936 979 4.006989 ACGATTAATTAACCTGCACAGCA 58.993 39.130 0.00 0.00 36.92 4.41
1062 1105 0.254178 GCAGAGAAGATGGGAAGGCA 59.746 55.000 0.00 0.00 0.00 4.75
1556 1679 1.583054 AAACGAGAAGCTGCGAGTTT 58.417 45.000 12.83 12.83 0.00 2.66
1610 1733 2.032204 GGAAATGAGCAGTGCATCGATC 60.032 50.000 19.20 9.57 0.00 3.69
1612 1735 1.065926 AGGAAATGAGCAGTGCATCGA 60.066 47.619 19.20 0.00 0.00 3.59
1643 1766 3.258372 TCAGCAACCTACTCACGAAGATT 59.742 43.478 0.00 0.00 0.00 2.40
1660 1783 1.003928 AGCAGATGGACAATGTCAGCA 59.996 47.619 15.86 5.27 33.68 4.41
1661 1784 1.400846 CAGCAGATGGACAATGTCAGC 59.599 52.381 15.86 10.16 33.68 4.26
1662 1785 2.981898 TCAGCAGATGGACAATGTCAG 58.018 47.619 15.86 0.74 33.68 3.51
1663 1786 3.199289 AGATCAGCAGATGGACAATGTCA 59.801 43.478 15.86 1.97 33.72 3.58
1667 1790 5.563876 ACATAGATCAGCAGATGGACAAT 57.436 39.130 0.00 0.00 33.72 2.71
1697 1820 5.183331 AGAACAATCTTCGTAGCAGTGTAGA 59.817 40.000 0.00 0.00 29.15 2.59
1725 1848 0.249868 TGACTGCAACCGAGACAAGG 60.250 55.000 0.00 0.00 0.00 3.61
1765 1888 2.092323 GCCCTAGAAGGCGTTGATTTT 58.908 47.619 0.00 0.00 44.57 1.82
1784 1907 0.179103 AAACAAGGCAAGCACACAGC 60.179 50.000 0.00 0.00 46.19 4.40
1808 1931 3.642705 GGATGTGCCTTTGTTTCTGTTC 58.357 45.455 0.00 0.00 0.00 3.18
1842 1968 1.808343 GCACATTGCAGAGTGTCATCA 59.192 47.619 18.16 0.00 44.26 3.07
1847 1973 2.620112 GGCGCACATTGCAGAGTGT 61.620 57.895 10.83 8.60 45.36 3.55
1848 1974 2.177531 GGCGCACATTGCAGAGTG 59.822 61.111 10.83 14.24 45.36 3.51
1877 2003 4.024302 GCTTGTCACCCTACAAAGTACAAC 60.024 45.833 0.00 0.00 38.81 3.32
1879 2005 3.134985 TGCTTGTCACCCTACAAAGTACA 59.865 43.478 0.00 0.00 38.81 2.90
1946 2076 4.093998 CCATCATCACAAGTAAGCAGACAC 59.906 45.833 0.00 0.00 0.00 3.67
1957 2087 3.900966 TCAGAGACCCATCATCACAAG 57.099 47.619 0.00 0.00 0.00 3.16
1966 2096 4.226846 ACATGAACAAGATCAGAGACCCAT 59.773 41.667 0.00 0.00 31.76 4.00
1993 2124 3.651423 ACTTCACCTAACTAAAGGCCAGT 59.349 43.478 5.01 0.00 40.62 4.00
2002 2133 5.047519 GCCTACAGTTCACTTCACCTAACTA 60.048 44.000 0.00 0.00 31.20 2.24
2013 2144 2.222027 GCACAAAGCCTACAGTTCACT 58.778 47.619 0.00 0.00 37.23 3.41
2014 2145 1.069906 CGCACAAAGCCTACAGTTCAC 60.070 52.381 0.00 0.00 41.38 3.18
2017 2148 0.107831 TCCGCACAAAGCCTACAGTT 59.892 50.000 0.00 0.00 41.38 3.16
2022 2153 0.970640 TGTACTCCGCACAAAGCCTA 59.029 50.000 0.00 0.00 41.38 3.93
2034 2165 3.633065 GGTATGTCAGACCTCTGTACTCC 59.367 52.174 9.49 0.00 44.12 3.85
2094 2239 3.579534 TGTGCTTGGTACCCTACAAAA 57.420 42.857 10.07 0.00 0.00 2.44
2158 2329 4.115516 CAGTAACCTGTGCTGCTACATAG 58.884 47.826 0.00 1.85 33.80 2.23
2162 2333 2.743636 TCAGTAACCTGTGCTGCTAC 57.256 50.000 0.00 0.00 39.82 3.58
2169 2340 1.808411 ACGCCAATCAGTAACCTGTG 58.192 50.000 0.00 0.00 39.82 3.66
2173 2344 1.134491 AGCCTACGCCAATCAGTAACC 60.134 52.381 0.00 0.00 34.57 2.85
2185 2356 0.108945 AACCACGACTAAGCCTACGC 60.109 55.000 0.00 0.00 0.00 4.42
2186 2357 1.625616 CAACCACGACTAAGCCTACG 58.374 55.000 0.00 0.00 0.00 3.51
2213 2384 1.376543 CGAGCTCGTTAGACCTACCA 58.623 55.000 27.79 0.00 34.11 3.25
2226 2397 1.805134 GCACTGCAGAGACGAGCTC 60.805 63.158 23.35 2.73 44.29 4.09
2268 2439 0.461339 ACAGTTTCGACACGTTGCCT 60.461 50.000 0.00 0.00 0.00 4.75
2269 2440 1.071041 GTACAGTTTCGACACGTTGCC 60.071 52.381 4.93 0.00 0.00 4.52
2315 2486 0.668401 GCTGCAAGGACAAATGGCAC 60.668 55.000 0.00 0.00 0.00 5.01
2316 2487 1.114119 TGCTGCAAGGACAAATGGCA 61.114 50.000 0.00 0.00 0.00 4.92
2341 2512 5.665916 AGATTCAAAATGCAAACCCTAGG 57.334 39.130 0.06 0.06 0.00 3.02
2351 2522 7.894376 TTCCAATCTTCAAGATTCAAAATGC 57.106 32.000 9.87 0.00 42.67 3.56
2366 2537 9.672673 CCCGTCATCTATATTATTTCCAATCTT 57.327 33.333 0.00 0.00 0.00 2.40
2367 2538 8.826765 ACCCGTCATCTATATTATTTCCAATCT 58.173 33.333 0.00 0.00 0.00 2.40
2368 2539 8.883731 CACCCGTCATCTATATTATTTCCAATC 58.116 37.037 0.00 0.00 0.00 2.67
2386 2559 1.944024 GAAATGACACAACACCCGTCA 59.056 47.619 0.00 0.00 43.35 4.35
2428 2601 1.608154 GCCCTAGGGGTTCAGGTTC 59.392 63.158 29.57 5.19 46.51 3.62
2431 2604 2.042930 AGGCCCTAGGGGTTCAGG 59.957 66.667 29.57 1.96 46.51 3.86
2433 2606 2.365105 CGAGGCCCTAGGGGTTCA 60.365 66.667 29.57 0.00 46.51 3.18
2449 2622 2.989824 ACACTCCCCCTCACGTCG 60.990 66.667 0.00 0.00 0.00 5.12
2451 2624 2.989824 CGACACTCCCCCTCACGT 60.990 66.667 0.00 0.00 0.00 4.49
2494 2668 5.964958 AAACCATCGCAATCCTATAATGG 57.035 39.130 0.00 0.00 39.62 3.16
2499 2673 3.312421 CGACAAAACCATCGCAATCCTAT 59.688 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.