Multiple sequence alignment - TraesCS1D01G036600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G036600 chr1D 100.000 2549 0 0 1 2549 17041320 17038772 0.000000e+00 4708.0
1 TraesCS1D01G036600 chr1D 96.364 110 3 1 476 584 2649652 2649761 2.010000e-41 180.0
2 TraesCS1D01G036600 chr4D 95.233 1993 60 10 583 2549 43272765 43270782 0.000000e+00 3121.0
3 TraesCS1D01G036600 chr4D 96.330 109 4 0 476 584 12723019 12723127 2.010000e-41 180.0
4 TraesCS1D01G036600 chr4D 96.364 110 3 1 476 584 381761839 381761948 2.010000e-41 180.0
5 TraesCS1D01G036600 chr5D 95.091 1976 56 8 585 2549 275163198 275161253 0.000000e+00 3073.0
6 TraesCS1D01G036600 chr5D 92.623 366 19 4 585 942 357075968 357075603 1.050000e-143 520.0
7 TraesCS1D01G036600 chr5D 96.983 232 7 0 2317 2548 84219481 84219250 8.550000e-105 390.0
8 TraesCS1D01G036600 chr5D 96.137 233 6 1 2317 2549 357074283 357074054 6.660000e-101 377.0
9 TraesCS1D01G036600 chr5D 96.364 110 3 1 476 584 487898410 487898519 2.010000e-41 180.0
10 TraesCS1D01G036600 chr5D 97.222 36 1 0 197 232 370319463 370319498 7.610000e-06 62.1
11 TraesCS1D01G036600 chr5B 94.416 1988 81 10 584 2549 508124525 508122546 0.000000e+00 3029.0
12 TraesCS1D01G036600 chr5B 94.035 1995 85 10 580 2549 680230622 680228637 0.000000e+00 2994.0
13 TraesCS1D01G036600 chr5B 93.115 2019 74 23 584 2549 452113408 452111402 0.000000e+00 2898.0
14 TraesCS1D01G036600 chr5B 93.506 1894 89 10 682 2549 693448273 693446388 0.000000e+00 2785.0
15 TraesCS1D01G036600 chr3B 94.171 1990 80 11 588 2549 548772277 548774258 0.000000e+00 3000.0
16 TraesCS1D01G036600 chr2D 93.605 1986 84 20 580 2549 632386599 632388557 0.000000e+00 2924.0
17 TraesCS1D01G036600 chr2D 96.369 358 9 1 585 942 16065486 16065839 1.020000e-163 586.0
18 TraesCS1D01G036600 chr2D 93.750 368 18 3 574 939 435209588 435209952 4.790000e-152 547.0
19 TraesCS1D01G036600 chr2D 96.552 232 7 1 2317 2548 84782509 84782739 1.430000e-102 383.0
20 TraesCS1D01G036600 chr2B 92.972 1992 79 20 585 2549 1180725 1182682 0.000000e+00 2846.0
21 TraesCS1D01G036600 chr5A 92.992 371 18 5 575 944 689409587 689409224 3.730000e-148 534.0
22 TraesCS1D01G036600 chr5A 91.689 373 25 3 574 942 28960268 28959898 1.750000e-141 512.0
23 TraesCS1D01G036600 chr5A 96.121 232 8 1 2317 2548 28958581 28958351 6.660000e-101 377.0
24 TraesCS1D01G036600 chr5A 89.820 167 17 0 310 476 19430107 19430273 5.520000e-52 215.0
25 TraesCS1D01G036600 chr1B 93.333 360 19 2 584 942 645321436 645321791 6.250000e-146 527.0
26 TraesCS1D01G036600 chr1B 91.617 167 12 2 310 476 4887300 4887464 1.970000e-56 230.0
27 TraesCS1D01G036600 chr3D 97.414 232 5 1 2317 2547 573732879 573733110 6.610000e-106 394.0
28 TraesCS1D01G036600 chr3D 97.273 110 2 1 476 584 609508323 609508432 4.330000e-43 185.0
29 TraesCS1D01G036600 chr7D 96.996 233 6 1 2317 2548 487832470 487832238 8.550000e-105 390.0
30 TraesCS1D01G036600 chrUn 96.137 233 8 1 2317 2549 43409528 43409759 1.850000e-101 379.0
31 TraesCS1D01G036600 chrUn 89.820 167 15 1 310 476 232271170 232271006 1.990000e-51 213.0
32 TraesCS1D01G036600 chr7A 95.745 235 9 1 2313 2547 12742793 12742560 6.660000e-101 377.0
33 TraesCS1D01G036600 chr2A 91.018 167 14 1 310 476 689723327 689723492 9.180000e-55 224.0
34 TraesCS1D01G036600 chr6A 89.222 167 17 1 310 476 14041712 14041877 9.240000e-50 207.0
35 TraesCS1D01G036600 chr6A 89.222 167 13 1 310 476 48031001 48030840 1.200000e-48 204.0
36 TraesCS1D01G036600 chr6A 88.690 168 15 3 309 476 46665334 46665171 4.300000e-48 202.0
37 TraesCS1D01G036600 chr4A 88.757 169 17 1 308 476 692288294 692288128 3.320000e-49 206.0
38 TraesCS1D01G036600 chr3A 88.690 168 19 0 309 476 705623588 705623421 3.320000e-49 206.0
39 TraesCS1D01G036600 chr6D 96.364 110 3 1 476 584 23765254 23765145 2.010000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G036600 chr1D 17038772 17041320 2548 True 4708.0 4708 100.000 1 2549 1 chr1D.!!$R1 2548
1 TraesCS1D01G036600 chr4D 43270782 43272765 1983 True 3121.0 3121 95.233 583 2549 1 chr4D.!!$R1 1966
2 TraesCS1D01G036600 chr5D 275161253 275163198 1945 True 3073.0 3073 95.091 585 2549 1 chr5D.!!$R2 1964
3 TraesCS1D01G036600 chr5D 357074054 357075968 1914 True 448.5 520 94.380 585 2549 2 chr5D.!!$R3 1964
4 TraesCS1D01G036600 chr5B 508122546 508124525 1979 True 3029.0 3029 94.416 584 2549 1 chr5B.!!$R2 1965
5 TraesCS1D01G036600 chr5B 680228637 680230622 1985 True 2994.0 2994 94.035 580 2549 1 chr5B.!!$R3 1969
6 TraesCS1D01G036600 chr5B 452111402 452113408 2006 True 2898.0 2898 93.115 584 2549 1 chr5B.!!$R1 1965
7 TraesCS1D01G036600 chr5B 693446388 693448273 1885 True 2785.0 2785 93.506 682 2549 1 chr5B.!!$R4 1867
8 TraesCS1D01G036600 chr3B 548772277 548774258 1981 False 3000.0 3000 94.171 588 2549 1 chr3B.!!$F1 1961
9 TraesCS1D01G036600 chr2D 632386599 632388557 1958 False 2924.0 2924 93.605 580 2549 1 chr2D.!!$F4 1969
10 TraesCS1D01G036600 chr2B 1180725 1182682 1957 False 2846.0 2846 92.972 585 2549 1 chr2B.!!$F1 1964
11 TraesCS1D01G036600 chr5A 28958351 28960268 1917 True 444.5 512 93.905 574 2548 2 chr5A.!!$R2 1974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.035056 AAAGGGGTGCGGAGAGATTG 60.035 55.0 0.0 0.0 0.0 2.67 F
352 353 0.036306 CACAGGTTCGTAAGGCCCTT 59.964 55.0 0.0 0.0 36.0 3.95 F
367 368 0.036306 CCCTTTAGTGCCGGTTCTGT 59.964 55.0 1.9 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1164 1217 1.135721 GGTGCAATTGCCCTGATTCTC 59.864 52.381 26.94 6.56 41.18 2.87 R
1361 1414 1.207791 GCCCTCCATCTCTTCTTCCA 58.792 55.000 0.00 0.00 0.00 3.53 R
2198 2264 1.251527 AAACACCACAAACCCACGCA 61.252 50.000 0.00 0.00 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.668550 GTGGTGGACGGACAAGGC 60.669 66.667 0.00 0.00 0.00 4.35
18 19 3.948719 TGGTGGACGGACAAGGCC 61.949 66.667 0.00 0.00 40.61 5.19
21 22 2.350895 TGGACGGACAAGGCCATG 59.649 61.111 5.01 5.77 46.16 3.66
22 23 2.438434 GGACGGACAAGGCCATGG 60.438 66.667 13.45 7.63 39.73 3.66
23 24 3.134127 GACGGACAAGGCCATGGC 61.134 66.667 29.47 29.47 41.06 4.40
25 26 4.776322 CGGACAAGGCCATGGCGA 62.776 66.667 29.90 0.00 43.06 5.54
26 27 2.361104 GGACAAGGCCATGGCGAA 60.361 61.111 29.90 0.00 43.06 4.70
27 28 1.976474 GGACAAGGCCATGGCGAAA 60.976 57.895 29.90 0.00 43.06 3.46
28 29 1.508088 GACAAGGCCATGGCGAAAG 59.492 57.895 29.90 20.71 43.06 2.62
29 30 1.937546 GACAAGGCCATGGCGAAAGG 61.938 60.000 29.90 18.72 43.06 3.11
30 31 2.362889 AAGGCCATGGCGAAAGGG 60.363 61.111 29.90 0.00 43.06 3.95
31 32 3.963124 AAGGCCATGGCGAAAGGGG 62.963 63.158 29.90 0.00 43.06 4.79
32 33 4.759205 GGCCATGGCGAAAGGGGT 62.759 66.667 29.90 0.00 43.06 4.95
33 34 3.451894 GCCATGGCGAAAGGGGTG 61.452 66.667 23.48 0.00 0.00 4.61
34 35 3.451894 CCATGGCGAAAGGGGTGC 61.452 66.667 0.00 0.00 0.00 5.01
35 36 3.814268 CATGGCGAAAGGGGTGCG 61.814 66.667 0.00 0.00 0.00 5.34
39 40 4.388499 GCGAAAGGGGTGCGGAGA 62.388 66.667 0.00 0.00 0.00 3.71
40 41 2.125512 CGAAAGGGGTGCGGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
41 42 2.646175 CGAAAGGGGTGCGGAGAGA 61.646 63.158 0.00 0.00 0.00 3.10
42 43 1.908483 GAAAGGGGTGCGGAGAGAT 59.092 57.895 0.00 0.00 0.00 2.75
43 44 0.253327 GAAAGGGGTGCGGAGAGATT 59.747 55.000 0.00 0.00 0.00 2.40
44 45 0.035056 AAAGGGGTGCGGAGAGATTG 60.035 55.000 0.00 0.00 0.00 2.67
45 46 1.915078 AAGGGGTGCGGAGAGATTGG 61.915 60.000 0.00 0.00 0.00 3.16
46 47 2.367202 GGGGTGCGGAGAGATTGGA 61.367 63.158 0.00 0.00 0.00 3.53
47 48 1.144936 GGGTGCGGAGAGATTGGAG 59.855 63.158 0.00 0.00 0.00 3.86
48 49 1.522580 GGTGCGGAGAGATTGGAGC 60.523 63.158 0.00 0.00 0.00 4.70
49 50 1.219124 GTGCGGAGAGATTGGAGCA 59.781 57.895 0.00 0.00 0.00 4.26
50 51 0.391661 GTGCGGAGAGATTGGAGCAA 60.392 55.000 0.00 0.00 36.32 3.91
51 52 0.324614 TGCGGAGAGATTGGAGCAAA 59.675 50.000 0.00 0.00 0.00 3.68
52 53 1.271325 TGCGGAGAGATTGGAGCAAAA 60.271 47.619 0.00 0.00 0.00 2.44
53 54 1.399791 GCGGAGAGATTGGAGCAAAAG 59.600 52.381 0.00 0.00 0.00 2.27
54 55 2.704572 CGGAGAGATTGGAGCAAAAGT 58.295 47.619 0.00 0.00 0.00 2.66
55 56 2.417933 CGGAGAGATTGGAGCAAAAGTG 59.582 50.000 0.00 0.00 0.00 3.16
56 57 2.751806 GGAGAGATTGGAGCAAAAGTGG 59.248 50.000 0.00 0.00 0.00 4.00
57 58 3.560025 GGAGAGATTGGAGCAAAAGTGGA 60.560 47.826 0.00 0.00 0.00 4.02
58 59 3.683802 AGAGATTGGAGCAAAAGTGGAG 58.316 45.455 0.00 0.00 0.00 3.86
59 60 2.751806 GAGATTGGAGCAAAAGTGGAGG 59.248 50.000 0.00 0.00 0.00 4.30
60 61 2.376518 AGATTGGAGCAAAAGTGGAGGA 59.623 45.455 0.00 0.00 0.00 3.71
61 62 2.276732 TTGGAGCAAAAGTGGAGGAG 57.723 50.000 0.00 0.00 0.00 3.69
62 63 1.434188 TGGAGCAAAAGTGGAGGAGA 58.566 50.000 0.00 0.00 0.00 3.71
63 64 1.988107 TGGAGCAAAAGTGGAGGAGAT 59.012 47.619 0.00 0.00 0.00 2.75
64 65 2.290514 TGGAGCAAAAGTGGAGGAGATG 60.291 50.000 0.00 0.00 0.00 2.90
65 66 2.363683 GAGCAAAAGTGGAGGAGATGG 58.636 52.381 0.00 0.00 0.00 3.51
66 67 1.005215 AGCAAAAGTGGAGGAGATGGG 59.995 52.381 0.00 0.00 0.00 4.00
67 68 1.004745 GCAAAAGTGGAGGAGATGGGA 59.995 52.381 0.00 0.00 0.00 4.37
68 69 2.943199 GCAAAAGTGGAGGAGATGGGAG 60.943 54.545 0.00 0.00 0.00 4.30
69 70 1.589414 AAAGTGGAGGAGATGGGAGG 58.411 55.000 0.00 0.00 0.00 4.30
70 71 0.327000 AAGTGGAGGAGATGGGAGGG 60.327 60.000 0.00 0.00 0.00 4.30
71 72 1.768077 GTGGAGGAGATGGGAGGGG 60.768 68.421 0.00 0.00 0.00 4.79
72 73 1.946707 TGGAGGAGATGGGAGGGGA 60.947 63.158 0.00 0.00 0.00 4.81
73 74 1.152139 GGAGGAGATGGGAGGGGAG 60.152 68.421 0.00 0.00 0.00 4.30
74 75 1.841103 GAGGAGATGGGAGGGGAGC 60.841 68.421 0.00 0.00 0.00 4.70
75 76 3.237741 GGAGATGGGAGGGGAGCG 61.238 72.222 0.00 0.00 0.00 5.03
76 77 3.237741 GAGATGGGAGGGGAGCGG 61.238 72.222 0.00 0.00 0.00 5.52
77 78 3.758133 GAGATGGGAGGGGAGCGGA 62.758 68.421 0.00 0.00 0.00 5.54
78 79 3.237741 GATGGGAGGGGAGCGGAG 61.238 72.222 0.00 0.00 0.00 4.63
79 80 3.758133 GATGGGAGGGGAGCGGAGA 62.758 68.421 0.00 0.00 0.00 3.71
80 81 3.765257 ATGGGAGGGGAGCGGAGAG 62.765 68.421 0.00 0.00 0.00 3.20
88 89 3.591835 GAGCGGAGAGGGCGAGAG 61.592 72.222 0.00 0.00 35.00 3.20
91 92 2.904866 CGGAGAGGGCGAGAGGAG 60.905 72.222 0.00 0.00 0.00 3.69
92 93 2.277404 GGAGAGGGCGAGAGGAGT 59.723 66.667 0.00 0.00 0.00 3.85
93 94 2.124693 GGAGAGGGCGAGAGGAGTG 61.125 68.421 0.00 0.00 0.00 3.51
94 95 1.077357 GAGAGGGCGAGAGGAGTGA 60.077 63.158 0.00 0.00 0.00 3.41
95 96 1.379309 AGAGGGCGAGAGGAGTGAC 60.379 63.158 0.00 0.00 0.00 3.67
96 97 2.752238 AGGGCGAGAGGAGTGACG 60.752 66.667 0.00 0.00 0.00 4.35
97 98 3.827898 GGGCGAGAGGAGTGACGG 61.828 72.222 0.00 0.00 0.00 4.79
98 99 3.063084 GGCGAGAGGAGTGACGGT 61.063 66.667 0.00 0.00 0.00 4.83
99 100 2.637383 GGCGAGAGGAGTGACGGTT 61.637 63.158 0.00 0.00 0.00 4.44
100 101 1.289380 GCGAGAGGAGTGACGGTTT 59.711 57.895 0.00 0.00 0.00 3.27
101 102 1.009389 GCGAGAGGAGTGACGGTTTG 61.009 60.000 0.00 0.00 0.00 2.93
102 103 0.596577 CGAGAGGAGTGACGGTTTGA 59.403 55.000 0.00 0.00 0.00 2.69
103 104 1.666311 CGAGAGGAGTGACGGTTTGAC 60.666 57.143 0.00 0.00 0.00 3.18
104 105 1.614413 GAGAGGAGTGACGGTTTGACT 59.386 52.381 0.00 0.00 0.00 3.41
105 106 2.818432 GAGAGGAGTGACGGTTTGACTA 59.182 50.000 0.00 0.00 0.00 2.59
106 107 2.820787 AGAGGAGTGACGGTTTGACTAG 59.179 50.000 0.00 0.00 0.00 2.57
107 108 1.893801 AGGAGTGACGGTTTGACTAGG 59.106 52.381 0.00 0.00 0.00 3.02
108 109 1.067071 GGAGTGACGGTTTGACTAGGG 60.067 57.143 0.00 0.00 0.00 3.53
109 110 1.617357 GAGTGACGGTTTGACTAGGGT 59.383 52.381 0.00 0.00 0.00 4.34
110 111 2.036862 GAGTGACGGTTTGACTAGGGTT 59.963 50.000 0.00 0.00 0.00 4.11
111 112 2.036862 AGTGACGGTTTGACTAGGGTTC 59.963 50.000 0.00 0.00 0.00 3.62
112 113 1.000060 TGACGGTTTGACTAGGGTTCG 60.000 52.381 0.00 0.00 0.00 3.95
113 114 1.000171 GACGGTTTGACTAGGGTTCGT 60.000 52.381 0.00 0.00 0.00 3.85
114 115 1.000171 ACGGTTTGACTAGGGTTCGTC 60.000 52.381 0.00 0.00 0.00 4.20
115 116 1.271656 CGGTTTGACTAGGGTTCGTCT 59.728 52.381 0.00 0.00 0.00 4.18
116 117 2.685100 GGTTTGACTAGGGTTCGTCTG 58.315 52.381 0.00 0.00 0.00 3.51
117 118 2.298163 GGTTTGACTAGGGTTCGTCTGA 59.702 50.000 0.00 0.00 0.00 3.27
118 119 3.576648 GTTTGACTAGGGTTCGTCTGAG 58.423 50.000 0.00 0.00 0.00 3.35
119 120 1.174783 TGACTAGGGTTCGTCTGAGC 58.825 55.000 0.00 0.00 0.00 4.26
120 121 1.174783 GACTAGGGTTCGTCTGAGCA 58.825 55.000 0.00 0.00 0.00 4.26
121 122 1.133407 GACTAGGGTTCGTCTGAGCAG 59.867 57.143 0.00 0.00 0.00 4.24
122 123 0.457851 CTAGGGTTCGTCTGAGCAGG 59.542 60.000 0.00 0.00 0.00 4.85
123 124 0.039180 TAGGGTTCGTCTGAGCAGGA 59.961 55.000 0.00 0.00 0.00 3.86
124 125 1.216710 GGGTTCGTCTGAGCAGGAG 59.783 63.158 0.00 0.00 0.00 3.69
125 126 1.216710 GGTTCGTCTGAGCAGGAGG 59.783 63.158 0.00 0.00 0.00 4.30
126 127 1.216710 GTTCGTCTGAGCAGGAGGG 59.783 63.158 0.00 0.00 0.00 4.30
127 128 1.076727 TTCGTCTGAGCAGGAGGGA 59.923 57.895 0.00 0.00 0.00 4.20
128 129 0.967887 TTCGTCTGAGCAGGAGGGAG 60.968 60.000 0.00 0.00 0.00 4.30
129 130 1.680651 CGTCTGAGCAGGAGGGAGT 60.681 63.158 0.00 0.00 0.00 3.85
130 131 1.254284 CGTCTGAGCAGGAGGGAGTT 61.254 60.000 0.00 0.00 0.00 3.01
131 132 0.980423 GTCTGAGCAGGAGGGAGTTT 59.020 55.000 0.00 0.00 0.00 2.66
132 133 1.349357 GTCTGAGCAGGAGGGAGTTTT 59.651 52.381 0.00 0.00 0.00 2.43
133 134 1.349026 TCTGAGCAGGAGGGAGTTTTG 59.651 52.381 0.00 0.00 0.00 2.44
134 135 1.072965 CTGAGCAGGAGGGAGTTTTGT 59.927 52.381 0.00 0.00 0.00 2.83
135 136 1.202806 TGAGCAGGAGGGAGTTTTGTG 60.203 52.381 0.00 0.00 0.00 3.33
136 137 1.072331 GAGCAGGAGGGAGTTTTGTGA 59.928 52.381 0.00 0.00 0.00 3.58
137 138 1.072965 AGCAGGAGGGAGTTTTGTGAG 59.927 52.381 0.00 0.00 0.00 3.51
138 139 1.884067 GCAGGAGGGAGTTTTGTGAGG 60.884 57.143 0.00 0.00 0.00 3.86
139 140 1.699634 CAGGAGGGAGTTTTGTGAGGA 59.300 52.381 0.00 0.00 0.00 3.71
140 141 1.700186 AGGAGGGAGTTTTGTGAGGAC 59.300 52.381 0.00 0.00 0.00 3.85
141 142 1.420138 GGAGGGAGTTTTGTGAGGACA 59.580 52.381 0.00 0.00 0.00 4.02
142 143 2.158667 GGAGGGAGTTTTGTGAGGACAA 60.159 50.000 0.00 0.00 40.45 3.18
143 144 3.498661 GGAGGGAGTTTTGTGAGGACAAT 60.499 47.826 0.00 0.00 41.77 2.71
144 145 4.145052 GAGGGAGTTTTGTGAGGACAATT 58.855 43.478 0.00 0.00 41.77 2.32
145 146 3.891366 AGGGAGTTTTGTGAGGACAATTG 59.109 43.478 3.24 3.24 41.77 2.32
146 147 3.636764 GGGAGTTTTGTGAGGACAATTGT 59.363 43.478 11.78 11.78 41.77 2.71
147 148 4.499696 GGGAGTTTTGTGAGGACAATTGTG 60.500 45.833 17.58 0.00 41.77 3.33
148 149 4.499696 GGAGTTTTGTGAGGACAATTGTGG 60.500 45.833 17.58 0.00 41.77 4.17
149 150 3.384467 AGTTTTGTGAGGACAATTGTGGG 59.616 43.478 17.58 0.00 41.77 4.61
150 151 1.993956 TTGTGAGGACAATTGTGGGG 58.006 50.000 17.58 0.00 37.15 4.96
151 152 0.112218 TGTGAGGACAATTGTGGGGG 59.888 55.000 17.58 0.00 0.00 5.40
152 153 1.076549 TGAGGACAATTGTGGGGGC 59.923 57.895 17.58 0.18 0.00 5.80
153 154 1.076549 GAGGACAATTGTGGGGGCA 59.923 57.895 17.58 0.00 0.00 5.36
154 155 0.967380 GAGGACAATTGTGGGGGCAG 60.967 60.000 17.58 0.00 0.00 4.85
155 156 1.228862 GGACAATTGTGGGGGCAGT 60.229 57.895 17.58 0.00 0.00 4.40
156 157 1.535204 GGACAATTGTGGGGGCAGTG 61.535 60.000 17.58 0.00 0.00 3.66
157 158 0.827507 GACAATTGTGGGGGCAGTGT 60.828 55.000 17.58 0.00 0.00 3.55
158 159 1.114722 ACAATTGTGGGGGCAGTGTG 61.115 55.000 11.07 0.00 0.00 3.82
159 160 1.533753 AATTGTGGGGGCAGTGTGG 60.534 57.895 0.00 0.00 0.00 4.17
160 161 3.528217 ATTGTGGGGGCAGTGTGGG 62.528 63.158 0.00 0.00 0.00 4.61
168 169 3.204827 GCAGTGTGGGCCATAGCG 61.205 66.667 10.70 1.42 41.24 4.26
169 170 2.514592 CAGTGTGGGCCATAGCGG 60.515 66.667 10.70 0.00 41.24 5.52
223 224 4.035102 GGCCTCCCCATATCCGCC 62.035 72.222 0.00 0.00 0.00 6.13
224 225 4.035102 GCCTCCCCATATCCGCCC 62.035 72.222 0.00 0.00 0.00 6.13
225 226 3.330720 CCTCCCCATATCCGCCCC 61.331 72.222 0.00 0.00 0.00 5.80
226 227 2.529136 CTCCCCATATCCGCCCCA 60.529 66.667 0.00 0.00 0.00 4.96
227 228 2.529136 TCCCCATATCCGCCCCAG 60.529 66.667 0.00 0.00 0.00 4.45
228 229 2.529136 CCCCATATCCGCCCCAGA 60.529 66.667 0.00 0.00 0.00 3.86
229 230 1.925455 CCCCATATCCGCCCCAGAT 60.925 63.158 0.00 0.00 0.00 2.90
230 231 0.620410 CCCCATATCCGCCCCAGATA 60.620 60.000 0.00 0.00 0.00 1.98
231 232 1.511613 CCCATATCCGCCCCAGATAT 58.488 55.000 0.00 0.00 37.40 1.63
232 233 2.689658 CCCATATCCGCCCCAGATATA 58.310 52.381 0.00 0.00 35.25 0.86
233 234 2.634940 CCCATATCCGCCCCAGATATAG 59.365 54.545 0.00 0.00 35.25 1.31
234 235 2.634940 CCATATCCGCCCCAGATATAGG 59.365 54.545 0.00 0.00 35.25 2.57
235 236 3.309296 CATATCCGCCCCAGATATAGGT 58.691 50.000 0.00 0.00 35.25 3.08
236 237 1.867363 ATCCGCCCCAGATATAGGTC 58.133 55.000 0.00 0.00 0.00 3.85
237 238 0.485543 TCCGCCCCAGATATAGGTCA 59.514 55.000 0.00 0.00 0.00 4.02
238 239 1.078823 TCCGCCCCAGATATAGGTCAT 59.921 52.381 0.00 0.00 0.00 3.06
239 240 2.313643 TCCGCCCCAGATATAGGTCATA 59.686 50.000 0.00 0.00 0.00 2.15
240 241 3.052109 TCCGCCCCAGATATAGGTCATAT 60.052 47.826 0.00 0.00 32.19 1.78
241 242 3.070159 CCGCCCCAGATATAGGTCATATG 59.930 52.174 0.00 0.00 29.49 1.78
242 243 3.706594 CGCCCCAGATATAGGTCATATGT 59.293 47.826 1.90 0.00 29.49 2.29
243 244 4.442052 CGCCCCAGATATAGGTCATATGTG 60.442 50.000 1.90 0.00 39.50 3.21
244 245 4.716784 GCCCCAGATATAGGTCATATGTGA 59.283 45.833 1.90 0.00 41.35 3.58
245 246 5.189736 GCCCCAGATATAGGTCATATGTGAA 59.810 44.000 1.90 0.00 41.35 3.18
246 247 6.631314 GCCCCAGATATAGGTCATATGTGAAG 60.631 46.154 1.90 0.00 41.35 3.02
247 248 6.669591 CCCCAGATATAGGTCATATGTGAAGA 59.330 42.308 1.90 0.00 41.35 2.87
248 249 7.180946 CCCCAGATATAGGTCATATGTGAAGAA 59.819 40.741 1.90 0.00 41.35 2.52
249 250 8.766476 CCCAGATATAGGTCATATGTGAAGAAT 58.234 37.037 1.90 0.00 41.35 2.40
250 251 9.597170 CCAGATATAGGTCATATGTGAAGAATG 57.403 37.037 1.90 0.00 41.35 2.67
251 252 9.096160 CAGATATAGGTCATATGTGAAGAATGC 57.904 37.037 1.90 0.00 41.35 3.56
252 253 8.263640 AGATATAGGTCATATGTGAAGAATGCC 58.736 37.037 1.90 0.00 35.80 4.40
253 254 3.470709 AGGTCATATGTGAAGAATGCCG 58.529 45.455 1.90 0.00 35.80 5.69
254 255 2.549754 GGTCATATGTGAAGAATGCCGG 59.450 50.000 0.00 0.00 35.80 6.13
255 256 3.206150 GTCATATGTGAAGAATGCCGGT 58.794 45.455 1.90 0.00 35.80 5.28
256 257 3.248602 GTCATATGTGAAGAATGCCGGTC 59.751 47.826 1.90 0.00 35.80 4.79
257 258 3.118445 TCATATGTGAAGAATGCCGGTCA 60.118 43.478 1.90 1.38 0.00 4.02
258 259 1.742761 ATGTGAAGAATGCCGGTCAG 58.257 50.000 1.90 0.00 0.00 3.51
259 260 0.396435 TGTGAAGAATGCCGGTCAGT 59.604 50.000 1.90 0.00 0.00 3.41
260 261 1.202758 TGTGAAGAATGCCGGTCAGTT 60.203 47.619 1.90 0.00 0.00 3.16
261 262 1.464997 GTGAAGAATGCCGGTCAGTTC 59.535 52.381 1.90 7.27 0.00 3.01
262 263 1.071542 TGAAGAATGCCGGTCAGTTCA 59.928 47.619 1.90 9.57 0.00 3.18
263 264 2.290260 TGAAGAATGCCGGTCAGTTCAT 60.290 45.455 1.90 0.00 0.00 2.57
264 265 1.742761 AGAATGCCGGTCAGTTCATG 58.257 50.000 1.90 0.00 0.00 3.07
265 266 1.003580 AGAATGCCGGTCAGTTCATGT 59.996 47.619 1.90 0.00 0.00 3.21
266 267 1.131126 GAATGCCGGTCAGTTCATGTG 59.869 52.381 1.90 0.00 0.00 3.21
267 268 0.036732 ATGCCGGTCAGTTCATGTGT 59.963 50.000 1.90 0.00 0.00 3.72
268 269 0.179032 TGCCGGTCAGTTCATGTGTT 60.179 50.000 1.90 0.00 0.00 3.32
269 270 0.951558 GCCGGTCAGTTCATGTGTTT 59.048 50.000 1.90 0.00 0.00 2.83
270 271 1.334960 GCCGGTCAGTTCATGTGTTTG 60.335 52.381 1.90 0.00 0.00 2.93
271 272 1.266718 CCGGTCAGTTCATGTGTTTGG 59.733 52.381 0.00 0.00 0.00 3.28
272 273 1.266718 CGGTCAGTTCATGTGTTTGGG 59.733 52.381 0.00 0.00 0.00 4.12
273 274 1.000274 GGTCAGTTCATGTGTTTGGGC 60.000 52.381 0.00 0.00 0.00 5.36
274 275 1.956477 GTCAGTTCATGTGTTTGGGCT 59.044 47.619 0.00 0.00 0.00 5.19
275 276 1.955778 TCAGTTCATGTGTTTGGGCTG 59.044 47.619 0.00 0.00 0.00 4.85
276 277 1.000060 CAGTTCATGTGTTTGGGCTGG 60.000 52.381 0.00 0.00 0.00 4.85
277 278 1.133513 AGTTCATGTGTTTGGGCTGGA 60.134 47.619 0.00 0.00 0.00 3.86
278 279 1.895131 GTTCATGTGTTTGGGCTGGAT 59.105 47.619 0.00 0.00 0.00 3.41
279 280 2.299867 GTTCATGTGTTTGGGCTGGATT 59.700 45.455 0.00 0.00 0.00 3.01
280 281 2.607499 TCATGTGTTTGGGCTGGATTT 58.393 42.857 0.00 0.00 0.00 2.17
281 282 2.299582 TCATGTGTTTGGGCTGGATTTG 59.700 45.455 0.00 0.00 0.00 2.32
282 283 0.392336 TGTGTTTGGGCTGGATTTGC 59.608 50.000 0.00 0.00 0.00 3.68
291 292 2.596046 TGGATTTGCCAACCGCGT 60.596 55.556 4.92 0.00 45.87 6.01
292 293 2.196925 TGGATTTGCCAACCGCGTT 61.197 52.632 4.92 0.00 45.87 4.84
293 294 1.006688 GGATTTGCCAACCGCGTTT 60.007 52.632 4.92 0.00 42.08 3.60
294 295 0.598942 GGATTTGCCAACCGCGTTTT 60.599 50.000 4.92 0.00 42.08 2.43
295 296 1.213491 GATTTGCCAACCGCGTTTTT 58.787 45.000 4.92 0.00 42.08 1.94
296 297 1.191425 GATTTGCCAACCGCGTTTTTC 59.809 47.619 4.92 0.00 42.08 2.29
297 298 0.173708 TTTGCCAACCGCGTTTTTCT 59.826 45.000 4.92 0.00 42.08 2.52
298 299 0.173708 TTGCCAACCGCGTTTTTCTT 59.826 45.000 4.92 0.00 42.08 2.52
299 300 0.526524 TGCCAACCGCGTTTTTCTTG 60.527 50.000 4.92 0.00 42.08 3.02
300 301 1.817217 GCCAACCGCGTTTTTCTTGC 61.817 55.000 4.92 0.00 0.00 4.01
304 305 4.893241 CGCGTTTTTCTTGCGTCT 57.107 50.000 0.00 0.00 46.29 4.18
305 306 2.399704 CGCGTTTTTCTTGCGTCTG 58.600 52.632 0.00 0.00 46.29 3.51
306 307 0.042535 CGCGTTTTTCTTGCGTCTGA 60.043 50.000 0.00 0.00 46.29 3.27
307 308 1.663494 GCGTTTTTCTTGCGTCTGAG 58.337 50.000 0.00 0.00 0.00 3.35
308 309 1.003866 GCGTTTTTCTTGCGTCTGAGT 60.004 47.619 0.00 0.00 0.00 3.41
309 310 2.892613 CGTTTTTCTTGCGTCTGAGTC 58.107 47.619 0.00 0.00 0.00 3.36
310 311 2.284150 CGTTTTTCTTGCGTCTGAGTCA 59.716 45.455 0.00 0.00 0.00 3.41
311 312 3.608456 GTTTTTCTTGCGTCTGAGTCAC 58.392 45.455 0.00 0.00 0.00 3.67
312 313 2.890808 TTTCTTGCGTCTGAGTCACT 57.109 45.000 0.00 0.00 0.00 3.41
313 314 4.316205 TTTTCTTGCGTCTGAGTCACTA 57.684 40.909 0.00 0.00 0.00 2.74
314 315 3.560902 TTCTTGCGTCTGAGTCACTAG 57.439 47.619 0.00 0.00 0.00 2.57
315 316 2.505405 TCTTGCGTCTGAGTCACTAGT 58.495 47.619 0.00 0.00 0.00 2.57
316 317 2.226674 TCTTGCGTCTGAGTCACTAGTG 59.773 50.000 17.17 17.17 0.00 2.74
317 318 0.241213 TGCGTCTGAGTCACTAGTGC 59.759 55.000 18.45 12.92 0.00 4.40
318 319 0.794981 GCGTCTGAGTCACTAGTGCG 60.795 60.000 18.45 14.19 0.00 5.34
319 320 0.179187 CGTCTGAGTCACTAGTGCGG 60.179 60.000 18.45 9.50 0.00 5.69
320 321 1.166129 GTCTGAGTCACTAGTGCGGA 58.834 55.000 18.45 11.68 0.00 5.54
321 322 1.540267 GTCTGAGTCACTAGTGCGGAA 59.460 52.381 18.45 0.00 0.00 4.30
322 323 1.540267 TCTGAGTCACTAGTGCGGAAC 59.460 52.381 18.45 10.90 0.00 3.62
323 324 0.601558 TGAGTCACTAGTGCGGAACC 59.398 55.000 18.45 6.10 0.00 3.62
324 325 0.456312 GAGTCACTAGTGCGGAACCG 60.456 60.000 18.45 9.00 43.09 4.44
325 326 1.445582 GTCACTAGTGCGGAACCGG 60.446 63.158 18.45 0.00 40.19 5.28
326 327 2.125673 CACTAGTGCGGAACCGGG 60.126 66.667 10.54 0.00 40.19 5.73
327 328 4.078516 ACTAGTGCGGAACCGGGC 62.079 66.667 15.01 0.00 40.19 6.13
328 329 3.771160 CTAGTGCGGAACCGGGCT 61.771 66.667 15.01 0.00 40.19 5.19
329 330 2.362760 TAGTGCGGAACCGGGCTA 60.363 61.111 15.01 0.00 40.19 3.93
330 331 1.745320 CTAGTGCGGAACCGGGCTAT 61.745 60.000 15.01 0.00 40.19 2.97
331 332 0.467844 TAGTGCGGAACCGGGCTATA 60.468 55.000 15.01 0.00 40.19 1.31
332 333 1.300697 GTGCGGAACCGGGCTATAG 60.301 63.158 15.01 0.00 40.19 1.31
333 334 2.357154 GCGGAACCGGGCTATAGC 60.357 66.667 16.78 16.78 40.19 2.97
334 335 3.134879 CGGAACCGGGCTATAGCA 58.865 61.111 25.53 0.00 44.36 3.49
335 336 1.300697 CGGAACCGGGCTATAGCAC 60.301 63.158 25.53 21.77 44.36 4.40
336 337 1.827394 GGAACCGGGCTATAGCACA 59.173 57.895 26.09 0.00 46.93 4.57
337 338 0.249911 GGAACCGGGCTATAGCACAG 60.250 60.000 26.09 17.89 46.93 3.66
338 339 0.249911 GAACCGGGCTATAGCACAGG 60.250 60.000 26.09 26.19 46.93 4.00
339 340 0.981277 AACCGGGCTATAGCACAGGT 60.981 55.000 27.28 27.28 46.93 4.00
340 341 0.981277 ACCGGGCTATAGCACAGGTT 60.981 55.000 27.28 16.75 46.93 3.50
341 342 0.249911 CCGGGCTATAGCACAGGTTC 60.250 60.000 26.09 7.04 46.93 3.62
342 343 0.597637 CGGGCTATAGCACAGGTTCG 60.598 60.000 26.09 12.90 46.93 3.95
343 344 0.464452 GGGCTATAGCACAGGTTCGT 59.536 55.000 25.53 0.00 45.57 3.85
344 345 1.684983 GGGCTATAGCACAGGTTCGTA 59.315 52.381 25.53 0.00 45.57 3.43
345 346 2.101917 GGGCTATAGCACAGGTTCGTAA 59.898 50.000 25.53 0.00 45.57 3.18
346 347 3.381949 GGCTATAGCACAGGTTCGTAAG 58.618 50.000 25.53 0.00 44.36 2.34
347 348 3.381949 GCTATAGCACAGGTTCGTAAGG 58.618 50.000 20.01 0.00 41.59 2.69
348 349 2.311124 ATAGCACAGGTTCGTAAGGC 57.689 50.000 0.00 0.00 38.47 4.35
349 350 0.248289 TAGCACAGGTTCGTAAGGCC 59.752 55.000 0.00 0.00 38.47 5.19
350 351 2.038837 GCACAGGTTCGTAAGGCCC 61.039 63.158 0.00 0.00 38.47 5.80
351 352 1.677552 CACAGGTTCGTAAGGCCCT 59.322 57.895 0.00 0.00 38.18 5.19
352 353 0.036306 CACAGGTTCGTAAGGCCCTT 59.964 55.000 0.00 0.00 36.00 3.95
353 354 0.769247 ACAGGTTCGTAAGGCCCTTT 59.231 50.000 0.00 0.00 36.00 3.11
354 355 1.980036 ACAGGTTCGTAAGGCCCTTTA 59.020 47.619 0.00 0.00 36.00 1.85
355 356 2.027469 ACAGGTTCGTAAGGCCCTTTAG 60.027 50.000 0.00 0.00 36.00 1.85
356 357 2.027469 CAGGTTCGTAAGGCCCTTTAGT 60.027 50.000 0.00 0.00 36.00 2.24
357 358 2.027469 AGGTTCGTAAGGCCCTTTAGTG 60.027 50.000 0.00 0.00 34.80 2.74
358 359 1.736126 GTTCGTAAGGCCCTTTAGTGC 59.264 52.381 0.00 0.00 38.47 4.40
363 364 2.035155 GGCCCTTTAGTGCCGGTT 59.965 61.111 1.90 0.00 38.00 4.44
364 365 2.044555 GGCCCTTTAGTGCCGGTTC 61.045 63.158 1.90 0.00 38.00 3.62
365 366 1.002502 GCCCTTTAGTGCCGGTTCT 60.003 57.895 1.90 4.41 0.00 3.01
366 367 1.305930 GCCCTTTAGTGCCGGTTCTG 61.306 60.000 1.90 0.00 0.00 3.02
367 368 0.036306 CCCTTTAGTGCCGGTTCTGT 59.964 55.000 1.90 0.00 0.00 3.41
368 369 1.276989 CCCTTTAGTGCCGGTTCTGTA 59.723 52.381 1.90 0.00 0.00 2.74
369 370 2.289819 CCCTTTAGTGCCGGTTCTGTAA 60.290 50.000 1.90 1.06 0.00 2.41
370 371 2.740447 CCTTTAGTGCCGGTTCTGTAAC 59.260 50.000 1.90 0.00 34.66 2.50
382 383 3.992427 GGTTCTGTAACCGTCACTAAAGG 59.008 47.826 0.00 0.00 45.61 3.11
383 384 4.502087 GGTTCTGTAACCGTCACTAAAGGT 60.502 45.833 0.00 0.00 45.61 3.50
384 385 4.510038 TCTGTAACCGTCACTAAAGGTC 57.490 45.455 0.00 0.00 39.00 3.85
385 386 3.256631 TCTGTAACCGTCACTAAAGGTCC 59.743 47.826 0.00 0.00 39.00 4.46
386 387 2.299867 TGTAACCGTCACTAAAGGTCCC 59.700 50.000 0.00 0.00 39.00 4.46
387 388 0.689055 AACCGTCACTAAAGGTCCCC 59.311 55.000 0.00 0.00 39.00 4.81
388 389 1.196766 ACCGTCACTAAAGGTCCCCC 61.197 60.000 0.00 0.00 34.20 5.40
408 409 1.576577 CCCCCTTTAGTACCGGTTCT 58.423 55.000 15.04 17.06 0.00 3.01
409 410 2.750814 CCCCCTTTAGTACCGGTTCTA 58.249 52.381 15.04 15.76 0.00 2.10
410 411 2.432146 CCCCCTTTAGTACCGGTTCTAC 59.568 54.545 19.42 9.16 0.00 2.59
411 412 3.099141 CCCCTTTAGTACCGGTTCTACA 58.901 50.000 19.42 12.89 0.00 2.74
412 413 3.118992 CCCCTTTAGTACCGGTTCTACAC 60.119 52.174 19.42 8.39 0.00 2.90
413 414 3.428045 CCCTTTAGTACCGGTTCTACACG 60.428 52.174 19.42 10.89 0.00 4.49
414 415 3.440173 CCTTTAGTACCGGTTCTACACGA 59.560 47.826 19.42 3.54 0.00 4.35
415 416 4.082787 CCTTTAGTACCGGTTCTACACGAA 60.083 45.833 19.42 10.79 0.00 3.85
422 423 1.779683 GTTCTACACGAACCGCTGC 59.220 57.895 0.00 0.00 45.00 5.25
423 424 0.666577 GTTCTACACGAACCGCTGCT 60.667 55.000 0.00 0.00 45.00 4.24
424 425 0.883153 TTCTACACGAACCGCTGCTA 59.117 50.000 0.00 0.00 0.00 3.49
425 426 0.883153 TCTACACGAACCGCTGCTAA 59.117 50.000 0.00 0.00 0.00 3.09
426 427 1.270274 TCTACACGAACCGCTGCTAAA 59.730 47.619 0.00 0.00 0.00 1.85
427 428 1.654105 CTACACGAACCGCTGCTAAAG 59.346 52.381 0.00 0.00 0.00 1.85
428 429 0.949105 ACACGAACCGCTGCTAAAGG 60.949 55.000 0.00 0.00 0.00 3.11
429 430 1.375523 ACGAACCGCTGCTAAAGGG 60.376 57.895 0.00 0.00 38.56 3.95
430 431 2.750888 CGAACCGCTGCTAAAGGGC 61.751 63.158 0.00 0.00 37.52 5.19
431 432 2.361230 AACCGCTGCTAAAGGGCC 60.361 61.111 0.00 0.00 37.52 5.80
432 433 3.204467 AACCGCTGCTAAAGGGCCA 62.204 57.895 6.18 0.00 37.52 5.36
433 434 3.134127 CCGCTGCTAAAGGGCCAC 61.134 66.667 6.18 0.00 37.52 5.01
434 435 3.134127 CGCTGCTAAAGGGCCACC 61.134 66.667 6.18 0.00 31.26 4.61
435 436 2.035626 GCTGCTAAAGGGCCACCA 59.964 61.111 6.18 0.00 40.13 4.17
436 437 2.343426 GCTGCTAAAGGGCCACCAC 61.343 63.158 6.18 0.00 40.13 4.16
437 438 2.033448 TGCTAAAGGGCCACCACG 59.967 61.111 6.18 0.00 40.13 4.94
438 439 2.033602 GCTAAAGGGCCACCACGT 59.966 61.111 6.18 0.00 40.13 4.49
439 440 2.332654 GCTAAAGGGCCACCACGTG 61.333 63.158 9.08 9.08 40.13 4.49
476 477 2.675371 GCGGGGAGCCCTTTAGTT 59.325 61.111 5.38 0.00 42.67 2.24
477 478 1.001269 GCGGGGAGCCCTTTAGTTT 60.001 57.895 5.38 0.00 42.67 2.66
478 479 1.313091 GCGGGGAGCCCTTTAGTTTG 61.313 60.000 5.38 0.00 42.67 2.93
479 480 0.037734 CGGGGAGCCCTTTAGTTTGT 59.962 55.000 5.38 0.00 42.67 2.83
480 481 1.545841 GGGGAGCCCTTTAGTTTGTG 58.454 55.000 5.38 0.00 41.34 3.33
481 482 1.203013 GGGGAGCCCTTTAGTTTGTGT 60.203 52.381 5.38 0.00 41.34 3.72
482 483 2.594131 GGGAGCCCTTTAGTTTGTGTT 58.406 47.619 0.00 0.00 0.00 3.32
483 484 2.557056 GGGAGCCCTTTAGTTTGTGTTC 59.443 50.000 0.00 0.00 0.00 3.18
484 485 3.219281 GGAGCCCTTTAGTTTGTGTTCA 58.781 45.455 0.00 0.00 0.00 3.18
485 486 3.826729 GGAGCCCTTTAGTTTGTGTTCAT 59.173 43.478 0.00 0.00 0.00 2.57
486 487 4.321230 GGAGCCCTTTAGTTTGTGTTCATG 60.321 45.833 0.00 0.00 0.00 3.07
487 488 4.469657 AGCCCTTTAGTTTGTGTTCATGA 58.530 39.130 0.00 0.00 0.00 3.07
488 489 5.079643 AGCCCTTTAGTTTGTGTTCATGAT 58.920 37.500 0.00 0.00 0.00 2.45
489 490 5.539955 AGCCCTTTAGTTTGTGTTCATGATT 59.460 36.000 0.00 0.00 0.00 2.57
490 491 6.041979 AGCCCTTTAGTTTGTGTTCATGATTT 59.958 34.615 0.00 0.00 0.00 2.17
491 492 6.366061 GCCCTTTAGTTTGTGTTCATGATTTC 59.634 38.462 0.00 0.00 0.00 2.17
492 493 7.661040 CCCTTTAGTTTGTGTTCATGATTTCT 58.339 34.615 0.00 0.00 0.00 2.52
493 494 8.143835 CCCTTTAGTTTGTGTTCATGATTTCTT 58.856 33.333 0.00 0.00 0.00 2.52
494 495 9.533253 CCTTTAGTTTGTGTTCATGATTTCTTT 57.467 29.630 0.00 0.00 0.00 2.52
498 499 8.424274 AGTTTGTGTTCATGATTTCTTTTTCC 57.576 30.769 0.00 0.00 0.00 3.13
499 500 8.260114 AGTTTGTGTTCATGATTTCTTTTTCCT 58.740 29.630 0.00 0.00 0.00 3.36
500 501 8.882736 GTTTGTGTTCATGATTTCTTTTTCCTT 58.117 29.630 0.00 0.00 0.00 3.36
501 502 9.447157 TTTGTGTTCATGATTTCTTTTTCCTTT 57.553 25.926 0.00 0.00 0.00 3.11
539 540 9.405587 TCTATTTAATTCTTTTTCGTTTGCTGG 57.594 29.630 0.00 0.00 0.00 4.85
540 541 9.191995 CTATTTAATTCTTTTTCGTTTGCTGGT 57.808 29.630 0.00 0.00 0.00 4.00
542 543 9.705290 ATTTAATTCTTTTTCGTTTGCTGGTAT 57.295 25.926 0.00 0.00 0.00 2.73
543 544 9.535878 TTTAATTCTTTTTCGTTTGCTGGTATT 57.464 25.926 0.00 0.00 0.00 1.89
544 545 9.535878 TTAATTCTTTTTCGTTTGCTGGTATTT 57.464 25.926 0.00 0.00 0.00 1.40
545 546 8.432110 AATTCTTTTTCGTTTGCTGGTATTTT 57.568 26.923 0.00 0.00 0.00 1.82
546 547 9.535878 AATTCTTTTTCGTTTGCTGGTATTTTA 57.464 25.926 0.00 0.00 0.00 1.52
547 548 9.705290 ATTCTTTTTCGTTTGCTGGTATTTTAT 57.295 25.926 0.00 0.00 0.00 1.40
548 549 8.514136 TCTTTTTCGTTTGCTGGTATTTTATG 57.486 30.769 0.00 0.00 0.00 1.90
549 550 8.353684 TCTTTTTCGTTTGCTGGTATTTTATGA 58.646 29.630 0.00 0.00 0.00 2.15
550 551 9.139174 CTTTTTCGTTTGCTGGTATTTTATGAT 57.861 29.630 0.00 0.00 0.00 2.45
552 553 9.562583 TTTTCGTTTGCTGGTATTTTATGATAC 57.437 29.630 0.00 0.00 32.84 2.24
553 554 8.500753 TTCGTTTGCTGGTATTTTATGATACT 57.499 30.769 0.00 0.00 33.86 2.12
554 555 9.602568 TTCGTTTGCTGGTATTTTATGATACTA 57.397 29.630 0.00 0.00 33.86 1.82
555 556 9.037737 TCGTTTGCTGGTATTTTATGATACTAC 57.962 33.333 0.00 0.00 33.86 2.73
556 557 8.822855 CGTTTGCTGGTATTTTATGATACTACA 58.177 33.333 0.00 0.00 33.86 2.74
573 574 9.401873 TGATACTACATATTGTACACGTTATGC 57.598 33.333 14.90 0.00 0.00 3.14
574 575 9.401873 GATACTACATATTGTACACGTTATGCA 57.598 33.333 14.90 0.00 0.00 3.96
575 576 9.923143 ATACTACATATTGTACACGTTATGCAT 57.077 29.630 3.79 3.79 0.00 3.96
577 578 9.923143 ACTACATATTGTACACGTTATGCATAT 57.077 29.630 7.36 0.00 0.00 1.78
670 671 1.003696 GCTCAGTTTTGCCCCTAGTCT 59.996 52.381 0.00 0.00 0.00 3.24
899 924 1.039785 TGACCATGGCGAGAGAGAGG 61.040 60.000 13.04 0.00 0.00 3.69
1007 1059 0.747255 GCTCCGAGCTCCATGTCTTA 59.253 55.000 13.42 0.00 38.45 2.10
1079 1131 1.285950 CTGTCTTCGTCTGTCCGCA 59.714 57.895 0.00 0.00 0.00 5.69
1149 1201 0.877071 ATCGTCCGTTCTACGTGTGT 59.123 50.000 0.00 0.00 40.58 3.72
1164 1217 0.249120 TGTGTAGCGAGAATGGGGTG 59.751 55.000 0.00 0.00 0.00 4.61
1629 1682 7.118390 TGTTGGTCAAAGTTGTTTAAATGTTGG 59.882 33.333 0.00 0.00 0.00 3.77
1738 1796 1.740043 GCTCTCTGCTCTGCCTTTCTC 60.740 57.143 0.00 0.00 38.95 2.87
2198 2264 1.609794 GGGACTCGAACCCAGGACT 60.610 63.158 18.78 0.00 46.05 3.85
2223 2289 0.677288 GGTTTGTGGTGTTTAGGGCC 59.323 55.000 0.00 0.00 0.00 5.80
2508 2617 8.970691 AATTTGCATGTTAGTTCATGACTTAC 57.029 30.769 10.28 1.47 45.41 2.34
2509 2618 7.744087 TTTGCATGTTAGTTCATGACTTACT 57.256 32.000 10.28 0.00 45.41 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.668550 GCCTTGTCCGTCCACCAC 60.669 66.667 0.00 0.00 0.00 4.16
1 2 3.948719 GGCCTTGTCCGTCCACCA 61.949 66.667 0.00 0.00 0.00 4.17
2 3 3.268103 ATGGCCTTGTCCGTCCACC 62.268 63.158 3.32 0.00 0.00 4.61
3 4 2.040544 CATGGCCTTGTCCGTCCAC 61.041 63.158 10.48 0.00 0.00 4.02
4 5 2.350895 CATGGCCTTGTCCGTCCA 59.649 61.111 10.48 0.00 0.00 4.02
5 6 2.438434 CCATGGCCTTGTCCGTCC 60.438 66.667 16.81 0.00 0.00 4.79
6 7 3.134127 GCCATGGCCTTGTCCGTC 61.134 66.667 27.24 0.00 34.56 4.79
8 9 4.776322 TCGCCATGGCCTTGTCCG 62.776 66.667 30.79 14.90 37.98 4.79
9 10 1.937546 CTTTCGCCATGGCCTTGTCC 61.938 60.000 30.79 1.84 37.98 4.02
10 11 1.508088 CTTTCGCCATGGCCTTGTC 59.492 57.895 30.79 3.65 37.98 3.18
11 12 1.978617 CCTTTCGCCATGGCCTTGT 60.979 57.895 30.79 0.00 37.98 3.16
12 13 2.713967 CCCTTTCGCCATGGCCTTG 61.714 63.158 30.79 17.20 37.98 3.61
13 14 2.362889 CCCTTTCGCCATGGCCTT 60.363 61.111 30.79 0.00 37.98 4.35
14 15 4.447342 CCCCTTTCGCCATGGCCT 62.447 66.667 30.79 0.00 37.98 5.19
15 16 4.759205 ACCCCTTTCGCCATGGCC 62.759 66.667 30.79 13.37 37.98 5.36
16 17 3.451894 CACCCCTTTCGCCATGGC 61.452 66.667 27.67 27.67 37.85 4.40
17 18 3.451894 GCACCCCTTTCGCCATGG 61.452 66.667 7.63 7.63 0.00 3.66
18 19 3.814268 CGCACCCCTTTCGCCATG 61.814 66.667 0.00 0.00 0.00 3.66
22 23 4.388499 TCTCCGCACCCCTTTCGC 62.388 66.667 0.00 0.00 0.00 4.70
23 24 1.961180 ATCTCTCCGCACCCCTTTCG 61.961 60.000 0.00 0.00 0.00 3.46
24 25 0.253327 AATCTCTCCGCACCCCTTTC 59.747 55.000 0.00 0.00 0.00 2.62
25 26 0.035056 CAATCTCTCCGCACCCCTTT 60.035 55.000 0.00 0.00 0.00 3.11
26 27 1.604378 CAATCTCTCCGCACCCCTT 59.396 57.895 0.00 0.00 0.00 3.95
27 28 2.370445 CCAATCTCTCCGCACCCCT 61.370 63.158 0.00 0.00 0.00 4.79
28 29 2.190578 CCAATCTCTCCGCACCCC 59.809 66.667 0.00 0.00 0.00 4.95
29 30 1.144936 CTCCAATCTCTCCGCACCC 59.855 63.158 0.00 0.00 0.00 4.61
30 31 1.522580 GCTCCAATCTCTCCGCACC 60.523 63.158 0.00 0.00 0.00 5.01
31 32 0.391661 TTGCTCCAATCTCTCCGCAC 60.392 55.000 0.00 0.00 0.00 5.34
32 33 0.324614 TTTGCTCCAATCTCTCCGCA 59.675 50.000 0.00 0.00 0.00 5.69
33 34 1.399791 CTTTTGCTCCAATCTCTCCGC 59.600 52.381 0.00 0.00 0.00 5.54
34 35 2.417933 CACTTTTGCTCCAATCTCTCCG 59.582 50.000 0.00 0.00 0.00 4.63
35 36 2.751806 CCACTTTTGCTCCAATCTCTCC 59.248 50.000 0.00 0.00 0.00 3.71
36 37 3.679389 TCCACTTTTGCTCCAATCTCTC 58.321 45.455 0.00 0.00 0.00 3.20
37 38 3.560882 CCTCCACTTTTGCTCCAATCTCT 60.561 47.826 0.00 0.00 0.00 3.10
38 39 2.751806 CCTCCACTTTTGCTCCAATCTC 59.248 50.000 0.00 0.00 0.00 2.75
39 40 2.376518 TCCTCCACTTTTGCTCCAATCT 59.623 45.455 0.00 0.00 0.00 2.40
40 41 2.751806 CTCCTCCACTTTTGCTCCAATC 59.248 50.000 0.00 0.00 0.00 2.67
41 42 2.376518 TCTCCTCCACTTTTGCTCCAAT 59.623 45.455 0.00 0.00 0.00 3.16
42 43 1.774254 TCTCCTCCACTTTTGCTCCAA 59.226 47.619 0.00 0.00 0.00 3.53
43 44 1.434188 TCTCCTCCACTTTTGCTCCA 58.566 50.000 0.00 0.00 0.00 3.86
44 45 2.363683 CATCTCCTCCACTTTTGCTCC 58.636 52.381 0.00 0.00 0.00 4.70
45 46 2.363683 CCATCTCCTCCACTTTTGCTC 58.636 52.381 0.00 0.00 0.00 4.26
46 47 1.005215 CCCATCTCCTCCACTTTTGCT 59.995 52.381 0.00 0.00 0.00 3.91
47 48 1.004745 TCCCATCTCCTCCACTTTTGC 59.995 52.381 0.00 0.00 0.00 3.68
48 49 2.356535 CCTCCCATCTCCTCCACTTTTG 60.357 54.545 0.00 0.00 0.00 2.44
49 50 1.918957 CCTCCCATCTCCTCCACTTTT 59.081 52.381 0.00 0.00 0.00 2.27
50 51 1.589414 CCTCCCATCTCCTCCACTTT 58.411 55.000 0.00 0.00 0.00 2.66
51 52 0.327000 CCCTCCCATCTCCTCCACTT 60.327 60.000 0.00 0.00 0.00 3.16
52 53 1.316266 CCCTCCCATCTCCTCCACT 59.684 63.158 0.00 0.00 0.00 4.00
53 54 1.768077 CCCCTCCCATCTCCTCCAC 60.768 68.421 0.00 0.00 0.00 4.02
54 55 1.946707 TCCCCTCCCATCTCCTCCA 60.947 63.158 0.00 0.00 0.00 3.86
55 56 1.152139 CTCCCCTCCCATCTCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
56 57 1.841103 GCTCCCCTCCCATCTCCTC 60.841 68.421 0.00 0.00 0.00 3.71
57 58 2.288643 GCTCCCCTCCCATCTCCT 59.711 66.667 0.00 0.00 0.00 3.69
58 59 3.237741 CGCTCCCCTCCCATCTCC 61.238 72.222 0.00 0.00 0.00 3.71
59 60 3.237741 CCGCTCCCCTCCCATCTC 61.238 72.222 0.00 0.00 0.00 2.75
60 61 3.765257 CTCCGCTCCCCTCCCATCT 62.765 68.421 0.00 0.00 0.00 2.90
61 62 3.237741 CTCCGCTCCCCTCCCATC 61.238 72.222 0.00 0.00 0.00 3.51
62 63 3.765257 CTCTCCGCTCCCCTCCCAT 62.765 68.421 0.00 0.00 0.00 4.00
63 64 4.465446 CTCTCCGCTCCCCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
71 72 3.591835 CTCTCGCCCTCTCCGCTC 61.592 72.222 0.00 0.00 0.00 5.03
74 75 2.904866 CTCCTCTCGCCCTCTCCG 60.905 72.222 0.00 0.00 0.00 4.63
75 76 2.124693 CACTCCTCTCGCCCTCTCC 61.125 68.421 0.00 0.00 0.00 3.71
76 77 1.077357 TCACTCCTCTCGCCCTCTC 60.077 63.158 0.00 0.00 0.00 3.20
77 78 1.379309 GTCACTCCTCTCGCCCTCT 60.379 63.158 0.00 0.00 0.00 3.69
78 79 2.766400 CGTCACTCCTCTCGCCCTC 61.766 68.421 0.00 0.00 0.00 4.30
79 80 2.752238 CGTCACTCCTCTCGCCCT 60.752 66.667 0.00 0.00 0.00 5.19
80 81 3.827898 CCGTCACTCCTCTCGCCC 61.828 72.222 0.00 0.00 0.00 6.13
81 82 2.156051 AAACCGTCACTCCTCTCGCC 62.156 60.000 0.00 0.00 0.00 5.54
82 83 1.009389 CAAACCGTCACTCCTCTCGC 61.009 60.000 0.00 0.00 0.00 5.03
83 84 0.596577 TCAAACCGTCACTCCTCTCG 59.403 55.000 0.00 0.00 0.00 4.04
84 85 1.614413 AGTCAAACCGTCACTCCTCTC 59.386 52.381 0.00 0.00 0.00 3.20
85 86 1.705873 AGTCAAACCGTCACTCCTCT 58.294 50.000 0.00 0.00 0.00 3.69
86 87 2.094649 CCTAGTCAAACCGTCACTCCTC 60.095 54.545 0.00 0.00 0.00 3.71
87 88 1.893801 CCTAGTCAAACCGTCACTCCT 59.106 52.381 0.00 0.00 0.00 3.69
88 89 1.067071 CCCTAGTCAAACCGTCACTCC 60.067 57.143 0.00 0.00 0.00 3.85
89 90 1.617357 ACCCTAGTCAAACCGTCACTC 59.383 52.381 0.00 0.00 0.00 3.51
90 91 1.713297 ACCCTAGTCAAACCGTCACT 58.287 50.000 0.00 0.00 0.00 3.41
91 92 2.410939 GAACCCTAGTCAAACCGTCAC 58.589 52.381 0.00 0.00 0.00 3.67
92 93 1.000060 CGAACCCTAGTCAAACCGTCA 60.000 52.381 0.00 0.00 0.00 4.35
93 94 1.000171 ACGAACCCTAGTCAAACCGTC 60.000 52.381 0.00 0.00 0.00 4.79
94 95 1.000171 GACGAACCCTAGTCAAACCGT 60.000 52.381 0.00 0.00 37.34 4.83
95 96 1.271656 AGACGAACCCTAGTCAAACCG 59.728 52.381 0.00 0.00 39.67 4.44
96 97 2.298163 TCAGACGAACCCTAGTCAAACC 59.702 50.000 0.00 0.00 39.67 3.27
97 98 3.576648 CTCAGACGAACCCTAGTCAAAC 58.423 50.000 0.00 0.00 39.67 2.93
98 99 2.029290 GCTCAGACGAACCCTAGTCAAA 60.029 50.000 0.00 0.00 39.67 2.69
99 100 1.544691 GCTCAGACGAACCCTAGTCAA 59.455 52.381 0.00 0.00 39.67 3.18
100 101 1.174783 GCTCAGACGAACCCTAGTCA 58.825 55.000 0.00 0.00 39.67 3.41
101 102 1.133407 CTGCTCAGACGAACCCTAGTC 59.867 57.143 0.00 0.00 37.63 2.59
102 103 1.178276 CTGCTCAGACGAACCCTAGT 58.822 55.000 0.00 0.00 0.00 2.57
103 104 0.457851 CCTGCTCAGACGAACCCTAG 59.542 60.000 0.00 0.00 0.00 3.02
104 105 0.039180 TCCTGCTCAGACGAACCCTA 59.961 55.000 0.00 0.00 0.00 3.53
105 106 1.228894 TCCTGCTCAGACGAACCCT 60.229 57.895 0.00 0.00 0.00 4.34
106 107 1.216710 CTCCTGCTCAGACGAACCC 59.783 63.158 0.00 0.00 0.00 4.11
107 108 1.216710 CCTCCTGCTCAGACGAACC 59.783 63.158 0.00 0.00 0.00 3.62
108 109 1.216710 CCCTCCTGCTCAGACGAAC 59.783 63.158 0.00 0.00 0.00 3.95
109 110 0.967887 CTCCCTCCTGCTCAGACGAA 60.968 60.000 0.00 0.00 0.00 3.85
110 111 1.379176 CTCCCTCCTGCTCAGACGA 60.379 63.158 0.00 0.00 0.00 4.20
111 112 1.254284 AACTCCCTCCTGCTCAGACG 61.254 60.000 0.00 0.00 0.00 4.18
112 113 0.980423 AAACTCCCTCCTGCTCAGAC 59.020 55.000 0.00 0.00 0.00 3.51
113 114 1.349026 CAAAACTCCCTCCTGCTCAGA 59.651 52.381 0.00 0.00 0.00 3.27
114 115 1.072965 ACAAAACTCCCTCCTGCTCAG 59.927 52.381 0.00 0.00 0.00 3.35
115 116 1.140312 ACAAAACTCCCTCCTGCTCA 58.860 50.000 0.00 0.00 0.00 4.26
116 117 1.072331 TCACAAAACTCCCTCCTGCTC 59.928 52.381 0.00 0.00 0.00 4.26
117 118 1.072965 CTCACAAAACTCCCTCCTGCT 59.927 52.381 0.00 0.00 0.00 4.24
118 119 1.528129 CTCACAAAACTCCCTCCTGC 58.472 55.000 0.00 0.00 0.00 4.85
119 120 1.699634 TCCTCACAAAACTCCCTCCTG 59.300 52.381 0.00 0.00 0.00 3.86
120 121 1.700186 GTCCTCACAAAACTCCCTCCT 59.300 52.381 0.00 0.00 0.00 3.69
121 122 1.420138 TGTCCTCACAAAACTCCCTCC 59.580 52.381 0.00 0.00 0.00 4.30
122 123 2.930826 TGTCCTCACAAAACTCCCTC 57.069 50.000 0.00 0.00 0.00 4.30
123 124 3.884037 ATTGTCCTCACAAAACTCCCT 57.116 42.857 0.00 0.00 45.78 4.20
124 125 3.636764 ACAATTGTCCTCACAAAACTCCC 59.363 43.478 4.92 0.00 45.78 4.30
125 126 4.499696 CCACAATTGTCCTCACAAAACTCC 60.500 45.833 8.48 0.00 45.78 3.85
126 127 4.499696 CCCACAATTGTCCTCACAAAACTC 60.500 45.833 8.48 0.00 45.78 3.01
127 128 3.384467 CCCACAATTGTCCTCACAAAACT 59.616 43.478 8.48 0.00 45.78 2.66
128 129 3.492482 CCCCACAATTGTCCTCACAAAAC 60.492 47.826 8.48 0.00 45.78 2.43
129 130 2.697751 CCCCACAATTGTCCTCACAAAA 59.302 45.455 8.48 0.00 45.78 2.44
130 131 2.315176 CCCCACAATTGTCCTCACAAA 58.685 47.619 8.48 0.00 45.78 2.83
131 132 1.480312 CCCCCACAATTGTCCTCACAA 60.480 52.381 8.48 0.00 46.71 3.33
132 133 0.112218 CCCCCACAATTGTCCTCACA 59.888 55.000 8.48 0.00 0.00 3.58
133 134 1.250840 GCCCCCACAATTGTCCTCAC 61.251 60.000 8.48 0.00 0.00 3.51
134 135 1.076549 GCCCCCACAATTGTCCTCA 59.923 57.895 8.48 0.00 0.00 3.86
135 136 0.967380 CTGCCCCCACAATTGTCCTC 60.967 60.000 8.48 0.00 0.00 3.71
136 137 1.077265 CTGCCCCCACAATTGTCCT 59.923 57.895 8.48 0.00 0.00 3.85
137 138 1.228862 ACTGCCCCCACAATTGTCC 60.229 57.895 8.48 0.00 0.00 4.02
138 139 0.827507 ACACTGCCCCCACAATTGTC 60.828 55.000 8.48 0.00 0.00 3.18
139 140 1.114722 CACACTGCCCCCACAATTGT 61.115 55.000 4.92 4.92 0.00 2.71
140 141 1.667151 CACACTGCCCCCACAATTG 59.333 57.895 3.24 3.24 0.00 2.32
141 142 1.533753 CCACACTGCCCCCACAATT 60.534 57.895 0.00 0.00 0.00 2.32
142 143 2.118076 CCACACTGCCCCCACAAT 59.882 61.111 0.00 0.00 0.00 2.71
143 144 4.217210 CCCACACTGCCCCCACAA 62.217 66.667 0.00 0.00 0.00 3.33
151 152 3.204827 CGCTATGGCCCACACTGC 61.205 66.667 0.00 0.00 34.44 4.40
152 153 2.514592 CCGCTATGGCCCACACTG 60.515 66.667 0.00 0.00 34.44 3.66
205 206 4.035102 GCGGATATGGGGAGGCCC 62.035 72.222 0.00 0.00 44.51 5.80
206 207 4.035102 GGCGGATATGGGGAGGCC 62.035 72.222 0.00 0.00 0.00 5.19
207 208 4.035102 GGGCGGATATGGGGAGGC 62.035 72.222 0.00 0.00 0.00 4.70
208 209 3.330720 GGGGCGGATATGGGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
209 210 2.529136 TGGGGCGGATATGGGGAG 60.529 66.667 0.00 0.00 0.00 4.30
210 211 2.415962 ATCTGGGGCGGATATGGGGA 62.416 60.000 0.00 0.00 0.00 4.81
211 212 0.620410 TATCTGGGGCGGATATGGGG 60.620 60.000 0.00 0.00 31.33 4.96
212 213 1.511613 ATATCTGGGGCGGATATGGG 58.488 55.000 0.00 0.00 39.92 4.00
213 214 2.634940 CCTATATCTGGGGCGGATATGG 59.365 54.545 0.00 0.00 41.07 2.74
214 215 3.309296 ACCTATATCTGGGGCGGATATG 58.691 50.000 0.00 0.00 41.07 1.78
215 216 3.052109 TGACCTATATCTGGGGCGGATAT 60.052 47.826 0.00 0.00 42.78 1.63
216 217 2.313643 TGACCTATATCTGGGGCGGATA 59.686 50.000 0.00 0.00 32.33 2.59
217 218 1.078823 TGACCTATATCTGGGGCGGAT 59.921 52.381 0.00 0.00 32.33 4.18
218 219 0.485543 TGACCTATATCTGGGGCGGA 59.514 55.000 0.60 0.00 32.33 5.54
219 220 1.573108 ATGACCTATATCTGGGGCGG 58.427 55.000 0.60 0.00 32.33 6.13
220 221 3.706594 ACATATGACCTATATCTGGGGCG 59.293 47.826 10.38 0.00 32.33 6.13
221 222 4.716784 TCACATATGACCTATATCTGGGGC 59.283 45.833 10.38 0.00 29.37 5.80
222 223 6.669591 TCTTCACATATGACCTATATCTGGGG 59.330 42.308 10.38 0.00 33.38 4.96
223 224 7.724490 TCTTCACATATGACCTATATCTGGG 57.276 40.000 10.38 0.00 33.38 4.45
224 225 9.597170 CATTCTTCACATATGACCTATATCTGG 57.403 37.037 10.38 0.00 33.38 3.86
225 226 9.096160 GCATTCTTCACATATGACCTATATCTG 57.904 37.037 10.38 0.00 33.38 2.90
226 227 8.263640 GGCATTCTTCACATATGACCTATATCT 58.736 37.037 10.38 0.00 33.38 1.98
227 228 7.223582 CGGCATTCTTCACATATGACCTATATC 59.776 40.741 10.38 0.00 33.38 1.63
228 229 7.044181 CGGCATTCTTCACATATGACCTATAT 58.956 38.462 10.38 0.00 33.38 0.86
229 230 6.398095 CGGCATTCTTCACATATGACCTATA 58.602 40.000 10.38 0.00 33.38 1.31
230 231 5.240891 CGGCATTCTTCACATATGACCTAT 58.759 41.667 10.38 0.00 33.38 2.57
231 232 4.503123 CCGGCATTCTTCACATATGACCTA 60.503 45.833 10.38 0.00 33.38 3.08
232 233 3.470709 CGGCATTCTTCACATATGACCT 58.529 45.455 10.38 0.00 33.38 3.85
233 234 2.549754 CCGGCATTCTTCACATATGACC 59.450 50.000 10.38 0.00 33.38 4.02
234 235 3.206150 ACCGGCATTCTTCACATATGAC 58.794 45.455 10.38 0.00 33.38 3.06
235 236 3.118445 TGACCGGCATTCTTCACATATGA 60.118 43.478 10.38 0.00 0.00 2.15
236 237 3.205338 TGACCGGCATTCTTCACATATG 58.795 45.455 0.00 0.00 0.00 1.78
237 238 3.118261 ACTGACCGGCATTCTTCACATAT 60.118 43.478 0.00 0.00 0.00 1.78
238 239 2.236146 ACTGACCGGCATTCTTCACATA 59.764 45.455 0.00 0.00 0.00 2.29
239 240 1.003580 ACTGACCGGCATTCTTCACAT 59.996 47.619 0.00 0.00 0.00 3.21
240 241 0.396435 ACTGACCGGCATTCTTCACA 59.604 50.000 0.00 0.00 0.00 3.58
241 242 1.464997 GAACTGACCGGCATTCTTCAC 59.535 52.381 0.00 0.00 0.00 3.18
242 243 1.071542 TGAACTGACCGGCATTCTTCA 59.928 47.619 0.00 5.67 0.00 3.02
243 244 1.808411 TGAACTGACCGGCATTCTTC 58.192 50.000 0.00 3.24 0.00 2.87
244 245 2.086869 CATGAACTGACCGGCATTCTT 58.913 47.619 0.00 0.00 0.00 2.52
245 246 1.003580 ACATGAACTGACCGGCATTCT 59.996 47.619 0.00 0.00 0.00 2.40
246 247 1.131126 CACATGAACTGACCGGCATTC 59.869 52.381 0.00 0.46 0.00 2.67
247 248 1.167851 CACATGAACTGACCGGCATT 58.832 50.000 0.00 0.00 0.00 3.56
248 249 0.036732 ACACATGAACTGACCGGCAT 59.963 50.000 0.00 0.00 0.00 4.40
249 250 0.179032 AACACATGAACTGACCGGCA 60.179 50.000 0.00 0.00 0.00 5.69
250 251 0.951558 AAACACATGAACTGACCGGC 59.048 50.000 0.00 0.00 0.00 6.13
251 252 1.266718 CCAAACACATGAACTGACCGG 59.733 52.381 0.00 0.00 0.00 5.28
252 253 1.266718 CCCAAACACATGAACTGACCG 59.733 52.381 0.00 0.00 0.00 4.79
253 254 1.000274 GCCCAAACACATGAACTGACC 60.000 52.381 0.00 0.00 0.00 4.02
254 255 1.956477 AGCCCAAACACATGAACTGAC 59.044 47.619 0.00 0.00 0.00 3.51
255 256 1.955778 CAGCCCAAACACATGAACTGA 59.044 47.619 0.00 0.00 0.00 3.41
256 257 1.000060 CCAGCCCAAACACATGAACTG 60.000 52.381 0.00 0.00 0.00 3.16
257 258 1.133513 TCCAGCCCAAACACATGAACT 60.134 47.619 0.00 0.00 0.00 3.01
258 259 1.327303 TCCAGCCCAAACACATGAAC 58.673 50.000 0.00 0.00 0.00 3.18
259 260 2.307496 ATCCAGCCCAAACACATGAA 57.693 45.000 0.00 0.00 0.00 2.57
260 261 2.299582 CAAATCCAGCCCAAACACATGA 59.700 45.455 0.00 0.00 0.00 3.07
261 262 2.690786 CAAATCCAGCCCAAACACATG 58.309 47.619 0.00 0.00 0.00 3.21
262 263 1.002315 GCAAATCCAGCCCAAACACAT 59.998 47.619 0.00 0.00 0.00 3.21
263 264 0.392336 GCAAATCCAGCCCAAACACA 59.608 50.000 0.00 0.00 0.00 3.72
264 265 0.320683 GGCAAATCCAGCCCAAACAC 60.321 55.000 0.00 0.00 46.50 3.32
265 266 2.056985 GGCAAATCCAGCCCAAACA 58.943 52.632 0.00 0.00 46.50 2.83
274 275 1.739338 AAACGCGGTTGGCAAATCCA 61.739 50.000 9.51 0.00 44.85 3.41
275 276 0.598942 AAAACGCGGTTGGCAAATCC 60.599 50.000 11.66 0.00 43.84 3.01
276 277 1.191425 GAAAAACGCGGTTGGCAAATC 59.809 47.619 11.66 0.00 43.84 2.17
277 278 1.202475 AGAAAAACGCGGTTGGCAAAT 60.202 42.857 11.66 0.00 43.84 2.32
278 279 0.173708 AGAAAAACGCGGTTGGCAAA 59.826 45.000 11.66 0.00 43.84 3.68
279 280 0.173708 AAGAAAAACGCGGTTGGCAA 59.826 45.000 11.66 0.00 43.84 4.52
280 281 0.526524 CAAGAAAAACGCGGTTGGCA 60.527 50.000 11.66 0.00 43.84 4.92
281 282 1.817217 GCAAGAAAAACGCGGTTGGC 61.817 55.000 11.66 5.51 38.69 4.52
282 283 1.536462 CGCAAGAAAAACGCGGTTGG 61.536 55.000 11.66 0.00 45.08 3.77
283 284 1.836800 CGCAAGAAAAACGCGGTTG 59.163 52.632 11.66 0.00 45.08 3.77
284 285 4.295381 CGCAAGAAAAACGCGGTT 57.705 50.000 12.47 7.61 45.08 4.44
288 289 1.003866 ACTCAGACGCAAGAAAAACGC 60.004 47.619 0.00 0.00 43.62 4.84
289 290 2.284150 TGACTCAGACGCAAGAAAAACG 59.716 45.455 0.00 0.00 43.62 3.60
290 291 3.309954 AGTGACTCAGACGCAAGAAAAAC 59.690 43.478 0.00 0.00 43.62 2.43
291 292 3.531538 AGTGACTCAGACGCAAGAAAAA 58.468 40.909 0.00 0.00 43.62 1.94
292 293 3.179443 AGTGACTCAGACGCAAGAAAA 57.821 42.857 0.00 0.00 43.62 2.29
293 294 2.890808 AGTGACTCAGACGCAAGAAA 57.109 45.000 0.00 0.00 43.62 2.52
294 295 2.885266 ACTAGTGACTCAGACGCAAGAA 59.115 45.455 0.00 0.00 43.62 2.52
295 296 2.226674 CACTAGTGACTCAGACGCAAGA 59.773 50.000 18.45 0.00 43.62 3.02
297 298 1.335964 GCACTAGTGACTCAGACGCAA 60.336 52.381 27.08 0.00 0.00 4.85
298 299 0.241213 GCACTAGTGACTCAGACGCA 59.759 55.000 27.08 0.00 0.00 5.24
299 300 0.794981 CGCACTAGTGACTCAGACGC 60.795 60.000 27.08 6.52 0.00 5.19
300 301 0.179187 CCGCACTAGTGACTCAGACG 60.179 60.000 27.08 16.92 0.00 4.18
301 302 1.166129 TCCGCACTAGTGACTCAGAC 58.834 55.000 27.08 5.72 0.00 3.51
302 303 1.540267 GTTCCGCACTAGTGACTCAGA 59.460 52.381 27.08 11.20 0.00 3.27
303 304 1.402984 GGTTCCGCACTAGTGACTCAG 60.403 57.143 27.08 10.71 0.00 3.35
304 305 0.601558 GGTTCCGCACTAGTGACTCA 59.398 55.000 27.08 4.14 0.00 3.41
305 306 0.456312 CGGTTCCGCACTAGTGACTC 60.456 60.000 27.08 7.96 0.00 3.36
306 307 1.585006 CGGTTCCGCACTAGTGACT 59.415 57.895 27.08 0.00 0.00 3.41
307 308 1.445582 CCGGTTCCGCACTAGTGAC 60.446 63.158 27.08 14.78 0.00 3.67
308 309 2.642254 CCCGGTTCCGCACTAGTGA 61.642 63.158 27.08 2.48 0.00 3.41
309 310 2.125673 CCCGGTTCCGCACTAGTG 60.126 66.667 18.93 18.93 0.00 2.74
310 311 4.078516 GCCCGGTTCCGCACTAGT 62.079 66.667 0.00 0.00 0.00 2.57
311 312 1.745320 ATAGCCCGGTTCCGCACTAG 61.745 60.000 0.00 0.00 0.00 2.57
312 313 0.467844 TATAGCCCGGTTCCGCACTA 60.468 55.000 0.00 9.32 0.00 2.74
313 314 1.745320 CTATAGCCCGGTTCCGCACT 61.745 60.000 0.00 7.48 0.00 4.40
314 315 1.300697 CTATAGCCCGGTTCCGCAC 60.301 63.158 0.00 0.00 0.00 5.34
315 316 3.134879 CTATAGCCCGGTTCCGCA 58.865 61.111 0.00 0.00 0.00 5.69
316 317 2.357154 GCTATAGCCCGGTTCCGC 60.357 66.667 14.13 0.00 34.31 5.54
317 318 1.300697 GTGCTATAGCCCGGTTCCG 60.301 63.158 21.84 4.08 41.18 4.30
318 319 0.249911 CTGTGCTATAGCCCGGTTCC 60.250 60.000 21.84 2.25 41.18 3.62
319 320 0.249911 CCTGTGCTATAGCCCGGTTC 60.250 60.000 21.84 6.29 41.18 3.62
320 321 0.981277 ACCTGTGCTATAGCCCGGTT 60.981 55.000 21.84 0.70 41.18 4.44
321 322 0.981277 AACCTGTGCTATAGCCCGGT 60.981 55.000 21.84 19.94 41.18 5.28
322 323 0.249911 GAACCTGTGCTATAGCCCGG 60.250 60.000 21.84 19.35 41.18 5.73
323 324 0.597637 CGAACCTGTGCTATAGCCCG 60.598 60.000 21.84 9.74 41.18 6.13
324 325 0.464452 ACGAACCTGTGCTATAGCCC 59.536 55.000 21.84 11.45 41.18 5.19
325 326 3.381949 CTTACGAACCTGTGCTATAGCC 58.618 50.000 21.84 13.33 41.18 3.93
326 327 3.381949 CCTTACGAACCTGTGCTATAGC 58.618 50.000 18.18 18.18 42.50 2.97
327 328 3.381949 GCCTTACGAACCTGTGCTATAG 58.618 50.000 0.00 0.00 0.00 1.31
328 329 2.101917 GGCCTTACGAACCTGTGCTATA 59.898 50.000 0.00 0.00 0.00 1.31
329 330 1.134491 GGCCTTACGAACCTGTGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
330 331 0.248289 GGCCTTACGAACCTGTGCTA 59.752 55.000 0.00 0.00 0.00 3.49
331 332 1.003718 GGCCTTACGAACCTGTGCT 60.004 57.895 0.00 0.00 0.00 4.40
332 333 2.038837 GGGCCTTACGAACCTGTGC 61.039 63.158 0.84 0.00 0.00 4.57
333 334 0.036306 AAGGGCCTTACGAACCTGTG 59.964 55.000 19.37 0.00 32.66 3.66
334 335 0.769247 AAAGGGCCTTACGAACCTGT 59.231 50.000 21.25 0.00 32.66 4.00
335 336 2.027469 ACTAAAGGGCCTTACGAACCTG 60.027 50.000 21.25 6.25 32.66 4.00
336 337 2.027469 CACTAAAGGGCCTTACGAACCT 60.027 50.000 21.25 4.21 34.04 3.50
337 338 2.353323 CACTAAAGGGCCTTACGAACC 58.647 52.381 21.25 0.00 0.00 3.62
338 339 1.736126 GCACTAAAGGGCCTTACGAAC 59.264 52.381 21.25 5.99 0.00 3.95
339 340 1.339342 GGCACTAAAGGGCCTTACGAA 60.339 52.381 21.25 4.81 46.74 3.85
340 341 0.251073 GGCACTAAAGGGCCTTACGA 59.749 55.000 21.25 7.25 46.74 3.43
341 342 2.776659 GGCACTAAAGGGCCTTACG 58.223 57.895 21.25 15.66 46.74 3.18
346 347 2.035155 AACCGGCACTAAAGGGCC 59.965 61.111 13.51 13.51 46.80 5.80
347 348 1.002502 AGAACCGGCACTAAAGGGC 60.003 57.895 0.00 0.00 0.00 5.19
348 349 0.036306 ACAGAACCGGCACTAAAGGG 59.964 55.000 0.00 0.00 0.00 3.95
349 350 2.740447 GTTACAGAACCGGCACTAAAGG 59.260 50.000 0.00 0.00 0.00 3.11
350 351 2.740447 GGTTACAGAACCGGCACTAAAG 59.260 50.000 0.00 0.00 45.73 1.85
351 352 2.769893 GGTTACAGAACCGGCACTAAA 58.230 47.619 0.00 0.00 45.73 1.85
352 353 2.460757 GGTTACAGAACCGGCACTAA 57.539 50.000 0.00 0.00 45.73 2.24
361 362 4.625028 ACCTTTAGTGACGGTTACAGAAC 58.375 43.478 5.81 0.00 34.56 3.01
362 363 4.262164 GGACCTTTAGTGACGGTTACAGAA 60.262 45.833 5.81 0.00 0.00 3.02
363 364 3.256631 GGACCTTTAGTGACGGTTACAGA 59.743 47.826 5.81 0.00 0.00 3.41
364 365 3.582780 GGACCTTTAGTGACGGTTACAG 58.417 50.000 5.81 0.00 0.00 2.74
365 366 2.299867 GGGACCTTTAGTGACGGTTACA 59.700 50.000 5.81 0.00 0.00 2.41
366 367 2.964740 GGGACCTTTAGTGACGGTTAC 58.035 52.381 0.00 0.00 0.00 2.50
389 390 1.576577 AGAACCGGTACTAAAGGGGG 58.423 55.000 8.00 0.00 0.00 5.40
390 391 3.099141 TGTAGAACCGGTACTAAAGGGG 58.901 50.000 8.00 0.00 0.00 4.79
391 392 3.428045 CGTGTAGAACCGGTACTAAAGGG 60.428 52.174 8.00 0.00 0.00 3.95
392 393 3.440173 TCGTGTAGAACCGGTACTAAAGG 59.560 47.826 8.00 0.00 0.00 3.11
393 394 4.685169 TCGTGTAGAACCGGTACTAAAG 57.315 45.455 8.00 0.00 0.00 1.85
405 406 0.883153 TAGCAGCGGTTCGTGTAGAA 59.117 50.000 0.00 0.00 36.31 2.10
406 407 0.883153 TTAGCAGCGGTTCGTGTAGA 59.117 50.000 0.00 0.00 0.00 2.59
407 408 1.654105 CTTTAGCAGCGGTTCGTGTAG 59.346 52.381 0.00 0.00 0.00 2.74
408 409 1.670674 CCTTTAGCAGCGGTTCGTGTA 60.671 52.381 0.00 0.00 0.00 2.90
409 410 0.949105 CCTTTAGCAGCGGTTCGTGT 60.949 55.000 0.00 0.00 0.00 4.49
410 411 1.635663 CCCTTTAGCAGCGGTTCGTG 61.636 60.000 0.00 0.00 0.00 4.35
411 412 1.375523 CCCTTTAGCAGCGGTTCGT 60.376 57.895 0.00 0.00 0.00 3.85
412 413 2.750888 GCCCTTTAGCAGCGGTTCG 61.751 63.158 0.00 0.00 0.00 3.95
413 414 2.407428 GGCCCTTTAGCAGCGGTTC 61.407 63.158 0.00 0.00 0.00 3.62
414 415 2.361230 GGCCCTTTAGCAGCGGTT 60.361 61.111 0.00 0.00 0.00 4.44
415 416 3.646715 TGGCCCTTTAGCAGCGGT 61.647 61.111 0.00 0.00 0.00 5.68
416 417 3.134127 GTGGCCCTTTAGCAGCGG 61.134 66.667 0.00 0.00 0.00 5.52
417 418 3.134127 GGTGGCCCTTTAGCAGCG 61.134 66.667 0.00 0.00 0.00 5.18
418 419 2.035626 TGGTGGCCCTTTAGCAGC 59.964 61.111 0.00 0.00 0.00 5.25
419 420 2.040544 CGTGGTGGCCCTTTAGCAG 61.041 63.158 0.00 0.00 0.00 4.24
420 421 2.033448 CGTGGTGGCCCTTTAGCA 59.967 61.111 0.00 0.00 0.00 3.49
421 422 2.033602 ACGTGGTGGCCCTTTAGC 59.966 61.111 0.00 0.00 0.00 3.09
422 423 3.981308 CACGTGGTGGCCCTTTAG 58.019 61.111 7.95 0.00 0.00 1.85
461 462 1.203013 ACACAAACTAAAGGGCTCCCC 60.203 52.381 0.32 0.00 45.90 4.81
462 463 2.287977 ACACAAACTAAAGGGCTCCC 57.712 50.000 0.00 0.00 0.00 4.30
463 464 3.219281 TGAACACAAACTAAAGGGCTCC 58.781 45.455 0.00 0.00 0.00 4.70
464 465 4.518970 TCATGAACACAAACTAAAGGGCTC 59.481 41.667 0.00 0.00 0.00 4.70
465 466 4.469657 TCATGAACACAAACTAAAGGGCT 58.530 39.130 0.00 0.00 0.00 5.19
466 467 4.846779 TCATGAACACAAACTAAAGGGC 57.153 40.909 0.00 0.00 0.00 5.19
467 468 7.661040 AGAAATCATGAACACAAACTAAAGGG 58.339 34.615 0.00 0.00 0.00 3.95
468 469 9.533253 AAAGAAATCATGAACACAAACTAAAGG 57.467 29.630 0.00 0.00 0.00 3.11
472 473 9.528018 GGAAAAAGAAATCATGAACACAAACTA 57.472 29.630 0.00 0.00 0.00 2.24
473 474 8.260114 AGGAAAAAGAAATCATGAACACAAACT 58.740 29.630 0.00 0.00 0.00 2.66
474 475 8.424274 AGGAAAAAGAAATCATGAACACAAAC 57.576 30.769 0.00 0.00 0.00 2.93
475 476 9.447157 AAAGGAAAAAGAAATCATGAACACAAA 57.553 25.926 0.00 0.00 0.00 2.83
513 514 9.405587 CCAGCAAACGAAAAAGAATTAAATAGA 57.594 29.630 0.00 0.00 0.00 1.98
514 515 9.191995 ACCAGCAAACGAAAAAGAATTAAATAG 57.808 29.630 0.00 0.00 0.00 1.73
516 517 9.705290 ATACCAGCAAACGAAAAAGAATTAAAT 57.295 25.926 0.00 0.00 0.00 1.40
517 518 9.535878 AATACCAGCAAACGAAAAAGAATTAAA 57.464 25.926 0.00 0.00 0.00 1.52
518 519 9.535878 AAATACCAGCAAACGAAAAAGAATTAA 57.464 25.926 0.00 0.00 0.00 1.40
519 520 9.535878 AAAATACCAGCAAACGAAAAAGAATTA 57.464 25.926 0.00 0.00 0.00 1.40
520 521 8.432110 AAAATACCAGCAAACGAAAAAGAATT 57.568 26.923 0.00 0.00 0.00 2.17
521 522 9.705290 ATAAAATACCAGCAAACGAAAAAGAAT 57.295 25.926 0.00 0.00 0.00 2.40
522 523 8.973378 CATAAAATACCAGCAAACGAAAAAGAA 58.027 29.630 0.00 0.00 0.00 2.52
523 524 8.353684 TCATAAAATACCAGCAAACGAAAAAGA 58.646 29.630 0.00 0.00 0.00 2.52
524 525 8.514136 TCATAAAATACCAGCAAACGAAAAAG 57.486 30.769 0.00 0.00 0.00 2.27
526 527 9.562583 GTATCATAAAATACCAGCAAACGAAAA 57.437 29.630 0.00 0.00 0.00 2.29
527 528 8.952278 AGTATCATAAAATACCAGCAAACGAAA 58.048 29.630 0.00 0.00 33.42 3.46
528 529 8.500753 AGTATCATAAAATACCAGCAAACGAA 57.499 30.769 0.00 0.00 33.42 3.85
529 530 9.037737 GTAGTATCATAAAATACCAGCAAACGA 57.962 33.333 0.00 0.00 33.42 3.85
530 531 8.822855 TGTAGTATCATAAAATACCAGCAAACG 58.177 33.333 0.00 0.00 33.42 3.60
547 548 9.401873 GCATAACGTGTACAATATGTAGTATCA 57.598 33.333 18.41 0.00 32.84 2.15
548 549 9.401873 TGCATAACGTGTACAATATGTAGTATC 57.598 33.333 18.41 7.77 32.84 2.24
549 550 9.923143 ATGCATAACGTGTACAATATGTAGTAT 57.077 29.630 18.41 10.25 32.84 2.12
551 552 9.923143 ATATGCATAACGTGTACAATATGTAGT 57.077 29.630 11.13 9.74 32.84 2.73
578 579 9.321532 GGGCAAAAGGATAATTAACCCTTATAT 57.678 33.333 17.67 8.77 39.21 0.86
670 671 4.578898 AACGAGTCGGTGCGCACA 62.579 61.111 38.60 19.65 0.00 4.57
899 924 4.864334 CCCACCGCCATGCTCTCC 62.864 72.222 0.00 0.00 0.00 3.71
1007 1059 3.241530 TGGCACGGGAGCTTGAGT 61.242 61.111 0.00 0.00 34.17 3.41
1059 1111 1.863662 GCGGACAGACGAAGACAGGA 61.864 60.000 0.00 0.00 35.47 3.86
1149 1201 1.860641 TTCTCACCCCATTCTCGCTA 58.139 50.000 0.00 0.00 0.00 4.26
1164 1217 1.135721 GGTGCAATTGCCCTGATTCTC 59.864 52.381 26.94 6.56 41.18 2.87
1361 1414 1.207791 GCCCTCCATCTCTTCTTCCA 58.792 55.000 0.00 0.00 0.00 3.53
1447 1500 5.193679 GGGTATTGGTAGTGCTTGATCTTT 58.806 41.667 0.00 0.00 0.00 2.52
2198 2264 1.251527 AAACACCACAAACCCACGCA 61.252 50.000 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.