Multiple sequence alignment - TraesCS1D01G035800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G035800 chr1D 100.000 4701 0 0 1 4701 16609499 16614199 0.000000e+00 8682.0
1 TraesCS1D01G035800 chr1D 72.516 1983 415 91 1655 3584 112470284 112468379 1.500000e-144 523.0
2 TraesCS1D01G035800 chr1D 74.618 524 115 14 2660 3177 455773940 455773429 1.020000e-51 215.0
3 TraesCS1D01G035800 chr1D 87.500 128 10 5 354 479 3476940 3476817 4.900000e-30 143.0
4 TraesCS1D01G035800 chr1D 86.508 126 11 5 358 480 291071188 291071066 2.950000e-27 134.0
5 TraesCS1D01G035800 chr1D 98.529 68 1 0 4095 4162 16790553 16790620 2.300000e-23 121.0
6 TraesCS1D01G035800 chr1B 94.155 2549 125 18 1214 3745 30544392 30546933 0.000000e+00 3860.0
7 TraesCS1D01G035800 chr1B 91.800 500 26 7 735 1221 30543473 30543970 0.000000e+00 682.0
8 TraesCS1D01G035800 chr1B 96.448 366 12 1 4337 4701 142873109 142873474 1.870000e-168 603.0
9 TraesCS1D01G035800 chr1B 72.461 1979 421 91 1655 3584 172008964 172007061 5.390000e-144 521.0
10 TraesCS1D01G035800 chr1B 71.429 1652 352 85 1571 3177 626153370 626154946 4.540000e-85 326.0
11 TraesCS1D01G035800 chr1B 92.273 220 14 2 117 333 30543025 30543244 4.570000e-80 309.0
12 TraesCS1D01G035800 chr1B 85.586 222 12 6 114 333 30525478 30525681 1.020000e-51 215.0
13 TraesCS1D01G035800 chr1B 90.323 124 7 4 358 479 31060281 31060161 1.750000e-34 158.0
14 TraesCS1D01G035800 chr1B 87.500 120 14 1 1 120 30542988 30543106 2.280000e-28 137.0
15 TraesCS1D01G035800 chr1B 93.976 83 5 0 498 580 30543316 30543398 4.940000e-25 126.0
16 TraesCS1D01G035800 chr1A 91.905 2409 160 18 1490 3885 17008893 17011279 0.000000e+00 3336.0
17 TraesCS1D01G035800 chr1A 91.705 868 51 6 358 1221 17007578 17008428 0.000000e+00 1184.0
18 TraesCS1D01G035800 chr1A 87.304 575 35 14 4163 4701 589155137 589155709 1.440000e-174 623.0
19 TraesCS1D01G035800 chr1A 96.154 364 12 2 1 363 17007106 17007468 1.130000e-165 593.0
20 TraesCS1D01G035800 chr1A 72.636 1988 406 95 1655 3584 119711442 119709535 8.960000e-147 531.0
21 TraesCS1D01G035800 chr1A 96.250 240 9 0 1214 1453 17008655 17008894 1.230000e-105 394.0
22 TraesCS1D01G035800 chr1A 75.676 518 106 17 2667 3177 549359065 549358561 1.690000e-59 241.0
23 TraesCS1D01G035800 chr1A 88.827 179 19 1 1046 1224 17072813 17072636 7.920000e-53 219.0
24 TraesCS1D01G035800 chr1A 89.683 126 8 4 358 481 1743373 1743495 6.300000e-34 156.0
25 TraesCS1D01G035800 chr1A 90.164 122 7 4 358 477 572886508 572886390 2.270000e-33 154.0
26 TraesCS1D01G035800 chr1A 88.889 126 9 4 358 481 362859131 362859009 2.930000e-32 150.0
27 TraesCS1D01G035800 chr1A 77.154 267 49 6 3661 3925 17011273 17011529 1.360000e-30 145.0
28 TraesCS1D01G035800 chr1A 98.529 68 1 0 4095 4162 54081710 54081643 2.300000e-23 121.0
29 TraesCS1D01G035800 chr1A 98.529 68 1 0 4095 4162 323181790 323181857 2.300000e-23 121.0
30 TraesCS1D01G035800 chr7D 88.090 2544 248 28 1227 3748 625599298 625596788 0.000000e+00 2968.0
31 TraesCS1D01G035800 chr7D 86.664 2572 257 50 1222 3745 625603858 625606391 0.000000e+00 2771.0
32 TraesCS1D01G035800 chr7D 91.071 560 26 14 4162 4701 29186520 29187075 0.000000e+00 736.0
33 TraesCS1D01G035800 chr7D 95.913 367 13 2 4337 4701 622131332 622131698 1.130000e-165 593.0
34 TraesCS1D01G035800 chr7D 86.702 564 34 18 4165 4701 523387272 523386723 5.240000e-164 588.0
35 TraesCS1D01G035800 chr7D 93.767 369 19 3 4337 4701 28270811 28270443 6.880000e-153 551.0
36 TraesCS1D01G035800 chr7D 85.145 276 26 9 858 1131 625600130 625599868 7.750000e-68 268.0
37 TraesCS1D01G035800 chr7D 85.859 198 22 5 73 266 625602159 625602354 6.170000e-49 206.0
38 TraesCS1D01G035800 chr7D 91.129 124 6 4 358 479 34314409 34314289 3.760000e-36 163.0
39 TraesCS1D01G035800 chr7D 88.608 79 9 0 1 79 625602682 625602760 3.870000e-16 97.1
40 TraesCS1D01G035800 chr7D 95.455 44 2 0 38 81 625600298 625600255 2.350000e-08 71.3
41 TraesCS1D01G035800 chr7D 91.837 49 0 1 529 573 625600298 625600250 1.090000e-06 65.8
42 TraesCS1D01G035800 chr7D 100.000 31 0 0 98 128 625600437 625600407 1.830000e-04 58.4
43 TraesCS1D01G035800 chr7B 87.393 2570 260 29 1220 3748 725519948 725517402 0.000000e+00 2892.0
44 TraesCS1D01G035800 chr7B 86.810 2517 253 51 1222 3701 725524468 725526942 0.000000e+00 2736.0
45 TraesCS1D01G035800 chr7B 85.350 314 36 8 854 1163 725520652 725520345 2.730000e-82 316.0
46 TraesCS1D01G035800 chr7B 84.932 219 21 8 53 265 725521803 725522015 1.330000e-50 211.0
47 TraesCS1D01G035800 chr7B 82.308 260 23 12 856 1115 725522748 725522984 2.220000e-48 204.0
48 TraesCS1D01G035800 chr7B 90.244 82 8 0 1 82 725522342 725522423 1.790000e-19 108.0
49 TraesCS1D01G035800 chr7B 92.857 42 3 0 38 79 725520818 725520777 1.410000e-05 62.1
50 TraesCS1D01G035800 chr7B 100.000 31 0 0 98 128 725520957 725520927 1.830000e-04 58.4
51 TraesCS1D01G035800 chr7A 87.150 2568 253 48 1222 3745 721172803 721175337 0.000000e+00 2843.0
52 TraesCS1D01G035800 chr7A 89.050 1516 139 13 1221 2724 721165414 721163914 0.000000e+00 1855.0
53 TraesCS1D01G035800 chr7A 86.781 991 100 21 2773 3748 721163914 721162940 0.000000e+00 1075.0
54 TraesCS1D01G035800 chr7A 73.347 1981 410 92 1245 3177 549528499 549530409 3.990000e-175 625.0
55 TraesCS1D01G035800 chr7A 83.601 311 40 9 854 1161 721166174 721165872 9.960000e-72 281.0
56 TraesCS1D01G035800 chr7A 88.128 219 24 2 97 314 721171532 721171749 4.670000e-65 259.0
57 TraesCS1D01G035800 chr7A 91.463 82 7 0 1 82 721167940 721168021 3.840000e-21 113.0
58 TraesCS1D01G035800 chr7A 100.000 29 0 0 38 66 721166321 721166293 2.000000e-03 54.7
59 TraesCS1D01G035800 chrUn 73.981 1987 401 87 1239 3176 156674884 156676803 0.000000e+00 699.0
60 TraesCS1D01G035800 chrUn 94.865 370 14 4 4337 4701 132172449 132172080 1.470000e-159 573.0
61 TraesCS1D01G035800 chrUn 89.606 279 17 10 4197 4469 68247128 68247400 1.250000e-90 344.0
62 TraesCS1D01G035800 chrUn 88.976 127 9 4 358 482 357761334 357761211 8.150000e-33 152.0
63 TraesCS1D01G035800 chrUn 88.095 126 12 3 358 482 439386200 439386077 3.790000e-31 147.0
64 TraesCS1D01G035800 chrUn 88.189 127 10 4 358 482 469989681 469989558 3.790000e-31 147.0
65 TraesCS1D01G035800 chrUn 87.402 127 10 5 358 482 433705747 433705625 1.760000e-29 141.0
66 TraesCS1D01G035800 chrUn 88.333 120 9 3 359 476 67363683 67363567 6.340000e-29 139.0
67 TraesCS1D01G035800 chrUn 83.495 103 12 4 358 458 85401213 85401312 1.800000e-14 91.6
68 TraesCS1D01G035800 chrUn 83.495 103 12 4 358 458 242415912 242415813 1.800000e-14 91.6
69 TraesCS1D01G035800 chr4B 73.845 1969 381 96 1268 3178 660353091 660354983 0.000000e+00 660.0
70 TraesCS1D01G035800 chr4B 89.600 125 8 4 358 480 565484065 565483944 2.270000e-33 154.0
71 TraesCS1D01G035800 chr4B 88.372 129 10 4 358 484 649244213 649244338 2.930000e-32 150.0
72 TraesCS1D01G035800 chr4B 88.889 126 7 6 358 480 523648940 523649061 1.050000e-31 148.0
73 TraesCS1D01G035800 chr4B 88.710 124 9 4 359 480 625860938 625861058 3.790000e-31 147.0
74 TraesCS1D01G035800 chr4B 98.529 68 1 0 4095 4162 109316668 109316601 2.300000e-23 121.0
75 TraesCS1D01G035800 chr3D 95.913 367 12 3 4337 4701 13843460 13843825 4.050000e-165 592.0
76 TraesCS1D01G035800 chr3D 91.167 317 15 10 4162 4469 611675867 611676179 7.280000e-113 418.0
77 TraesCS1D01G035800 chr3D 89.516 124 8 4 358 479 345245842 345245722 8.150000e-33 152.0
78 TraesCS1D01G035800 chr4A 94.865 370 14 4 4337 4701 563240085 563240454 1.470000e-159 573.0
79 TraesCS1D01G035800 chr4A 84.615 494 35 20 4202 4670 730453177 730452700 1.990000e-123 453.0
80 TraesCS1D01G035800 chr4A 84.361 454 34 19 4203 4635 730533071 730532634 1.220000e-110 411.0
81 TraesCS1D01G035800 chr4A 90.400 125 7 4 358 480 448377389 448377268 4.870000e-35 159.0
82 TraesCS1D01G035800 chr4A 89.600 125 8 3 358 480 3108220 3108099 2.270000e-33 154.0
83 TraesCS1D01G035800 chr2D 95.068 365 17 1 4337 4701 39146755 39146392 1.470000e-159 573.0
84 TraesCS1D01G035800 chr2D 94.118 357 16 2 4337 4689 99587783 99587428 5.350000e-149 538.0
85 TraesCS1D01G035800 chr2D 89.711 311 26 6 4163 4469 533996025 533996333 4.410000e-105 392.0
86 TraesCS1D01G035800 chr2D 88.710 310 27 7 4163 4467 311704663 311704969 5.750000e-99 372.0
87 TraesCS1D01G035800 chr3B 90.031 321 23 7 4158 4469 558092654 558092974 1.570000e-109 407.0
88 TraesCS1D01G035800 chr6D 94.667 225 6 3 4161 4379 5964388 5964164 1.250000e-90 344.0
89 TraesCS1D01G035800 chr6D 89.516 124 8 4 358 479 190463710 190463590 8.150000e-33 152.0
90 TraesCS1D01G035800 chr6D 88.800 125 9 4 358 480 28357085 28356964 1.050000e-31 148.0
91 TraesCS1D01G035800 chr6D 86.400 125 12 4 358 477 122931870 122931994 1.060000e-26 132.0
92 TraesCS1D01G035800 chr5D 85.028 354 36 8 2042 2388 299063673 299064016 1.250000e-90 344.0
93 TraesCS1D01G035800 chr5D 88.693 283 16 10 4197 4469 505000853 505001129 9.750000e-87 331.0
94 TraesCS1D01G035800 chr5D 98.529 68 1 0 4095 4162 534086281 534086214 2.300000e-23 121.0
95 TraesCS1D01G035800 chr5B 85.890 163 21 2 4099 4259 595615715 595615553 6.250000e-39 172.0
96 TraesCS1D01G035800 chr2B 90.400 125 7 4 358 480 382156774 382156895 4.870000e-35 159.0
97 TraesCS1D01G035800 chr6A 90.164 122 10 2 358 477 616097852 616097973 1.750000e-34 158.0
98 TraesCS1D01G035800 chr6A 98.529 68 1 0 4095 4162 36395133 36395066 2.300000e-23 121.0
99 TraesCS1D01G035800 chr6A 98.529 68 1 0 4095 4162 48644966 48644899 2.300000e-23 121.0
100 TraesCS1D01G035800 chr6B 89.600 125 8 4 358 480 85569145 85569024 2.270000e-33 154.0
101 TraesCS1D01G035800 chr6B 98.529 68 1 0 4095 4162 544695818 544695885 2.300000e-23 121.0
102 TraesCS1D01G035800 chr4D 85.246 122 13 4 358 477 52773474 52773356 2.300000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G035800 chr1D 16609499 16614199 4700 False 8682.000000 8682 100.000000 1 4701 1 chr1D.!!$F1 4700
1 TraesCS1D01G035800 chr1D 112468379 112470284 1905 True 523.000000 523 72.516000 1655 3584 1 chr1D.!!$R2 1929
2 TraesCS1D01G035800 chr1D 455773429 455773940 511 True 215.000000 215 74.618000 2660 3177 1 chr1D.!!$R4 517
3 TraesCS1D01G035800 chr1B 30542988 30546933 3945 False 1022.800000 3860 91.940800 1 3745 5 chr1B.!!$F4 3744
4 TraesCS1D01G035800 chr1B 172007061 172008964 1903 True 521.000000 521 72.461000 1655 3584 1 chr1B.!!$R2 1929
5 TraesCS1D01G035800 chr1B 626153370 626154946 1576 False 326.000000 326 71.429000 1571 3177 1 chr1B.!!$F3 1606
6 TraesCS1D01G035800 chr1A 17007106 17011529 4423 False 1130.400000 3336 90.633600 1 3925 5 chr1A.!!$F4 3924
7 TraesCS1D01G035800 chr1A 589155137 589155709 572 False 623.000000 623 87.304000 4163 4701 1 chr1A.!!$F3 538
8 TraesCS1D01G035800 chr1A 119709535 119711442 1907 True 531.000000 531 72.636000 1655 3584 1 chr1A.!!$R3 1929
9 TraesCS1D01G035800 chr1A 549358561 549359065 504 True 241.000000 241 75.676000 2667 3177 1 chr1A.!!$R5 510
10 TraesCS1D01G035800 chr7D 625602159 625606391 4232 False 1024.700000 2771 87.043667 1 3745 3 chr7D.!!$F3 3744
11 TraesCS1D01G035800 chr7D 29186520 29187075 555 False 736.000000 736 91.071000 4162 4701 1 chr7D.!!$F1 539
12 TraesCS1D01G035800 chr7D 625596788 625600437 3649 True 686.300000 2968 92.105400 38 3748 5 chr7D.!!$R4 3710
13 TraesCS1D01G035800 chr7D 523386723 523387272 549 True 588.000000 588 86.702000 4165 4701 1 chr7D.!!$R3 536
14 TraesCS1D01G035800 chr7B 725517402 725520957 3555 True 832.125000 2892 91.400000 38 3748 4 chr7B.!!$R1 3710
15 TraesCS1D01G035800 chr7B 725521803 725526942 5139 False 814.750000 2736 86.073500 1 3701 4 chr7B.!!$F1 3700
16 TraesCS1D01G035800 chr7A 721167940 721175337 7397 False 1071.666667 2843 88.913667 1 3745 3 chr7A.!!$F2 3744
17 TraesCS1D01G035800 chr7A 721162940 721166321 3381 True 816.425000 1855 89.858000 38 3748 4 chr7A.!!$R1 3710
18 TraesCS1D01G035800 chr7A 549528499 549530409 1910 False 625.000000 625 73.347000 1245 3177 1 chr7A.!!$F1 1932
19 TraesCS1D01G035800 chrUn 156674884 156676803 1919 False 699.000000 699 73.981000 1239 3176 1 chrUn.!!$F3 1937
20 TraesCS1D01G035800 chr4B 660353091 660354983 1892 False 660.000000 660 73.845000 1268 3178 1 chr4B.!!$F4 1910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 4562 0.460311 CTACCACGACTAGCCCTTGG 59.540 60.000 6.68 6.68 0.00 3.61 F
780 4694 1.201343 GTTCCTCGACGCTGCTTATC 58.799 55.000 0.00 0.00 0.00 1.75 F
956 5167 2.919602 ACCACCACATCCTCCACTATTT 59.080 45.455 0.00 0.00 0.00 1.40 F
2447 8429 2.999648 AGCAGCGCTGGAGGAAGA 61.000 61.111 36.47 0.00 37.57 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 8178 0.820871 GAGGAAGCTGACGATCTGGT 59.179 55.000 0.0 0.00 0.00 4.00 R
2470 8452 4.057428 GCTGCGAGGTCGACCAGT 62.057 66.667 35.0 17.11 43.02 4.00 R
3064 9052 3.718210 CTGGTACTCGCCGCCCTTC 62.718 68.421 0.0 0.00 0.00 3.46 R
4035 10317 0.036164 ACAGGACGTGGCTTGCATAA 59.964 50.000 0.0 0.00 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 214 3.694566 CCTATAAACAGTTCTGGCCAACC 59.305 47.826 7.01 0.00 0.00 3.77
104 223 3.976701 CTGGCCAACCGGGTGCTAG 62.977 68.421 16.13 13.33 38.86 3.42
108 227 1.984817 CCAACCGGGTGCTAGGTAA 59.015 57.895 16.13 0.00 40.37 2.85
117 236 3.315191 CGGGTGCTAGGTAATTTGAATGG 59.685 47.826 0.00 0.00 0.00 3.16
203 437 4.708177 AGGTGATTTGAATAGGATCCACG 58.292 43.478 15.82 0.00 0.00 4.94
268 3003 2.853003 GTCGATGAACTTTAGCCTCGAC 59.147 50.000 7.08 7.08 45.22 4.20
337 4046 1.270907 CCGGCTATAAGGGCATCTCT 58.729 55.000 0.00 0.00 0.00 3.10
348 4057 2.644798 AGGGCATCTCTAACAGGTTGTT 59.355 45.455 0.00 0.00 43.88 2.83
363 4072 5.105917 ACAGGTTGTTTGTTAGTCTTGTTGG 60.106 40.000 0.00 0.00 0.00 3.77
365 4074 5.479027 AGGTTGTTTGTTAGTCTTGTTGGTT 59.521 36.000 0.00 0.00 0.00 3.67
420 4246 8.085909 CACATTTATTACATGCCACATCATCAT 58.914 33.333 0.00 0.00 0.00 2.45
426 4252 7.585579 TTACATGCCACATCATCATTATGTT 57.414 32.000 0.00 0.00 35.39 2.71
430 4256 8.476447 ACATGCCACATCATCATTATGTTTTAA 58.524 29.630 0.00 0.00 35.39 1.52
449 4275 7.064728 TGTTTTAAGTGGCAAATTTACCAACAC 59.935 33.333 11.84 6.72 37.79 3.32
460 4286 8.466798 GCAAATTTACCAACACCTATCTTACAT 58.533 33.333 0.00 0.00 0.00 2.29
467 4293 6.013725 ACCAACACCTATCTTACATCTGTTGA 60.014 38.462 8.77 0.00 39.45 3.18
481 4307 4.640771 TCTGTTGAAGATGCCCTAAGTT 57.359 40.909 0.00 0.00 0.00 2.66
494 4320 3.006859 GCCCTAAGTTCACTGCCAATTTT 59.993 43.478 0.00 0.00 0.00 1.82
495 4321 4.503123 GCCCTAAGTTCACTGCCAATTTTT 60.503 41.667 0.00 0.00 0.00 1.94
588 4482 4.584638 ATCACTACTTGGCCAATTGGTA 57.415 40.909 25.19 17.51 37.57 3.25
589 4483 3.681593 TCACTACTTGGCCAATTGGTAC 58.318 45.455 25.19 18.33 37.57 3.34
668 4562 0.460311 CTACCACGACTAGCCCTTGG 59.540 60.000 6.68 6.68 0.00 3.61
777 4691 2.048127 GGTTCCTCGACGCTGCTT 60.048 61.111 0.00 0.00 0.00 3.91
780 4694 1.201343 GTTCCTCGACGCTGCTTATC 58.799 55.000 0.00 0.00 0.00 1.75
791 4707 4.934515 ACGCTGCTTATCTAAAGTACCTC 58.065 43.478 0.00 0.00 0.00 3.85
805 4721 6.405872 AAAGTACCTCCTAGTCCTCTAGTT 57.594 41.667 0.00 0.00 41.31 2.24
812 4728 7.597327 ACCTCCTAGTCCTCTAGTTGATTAAT 58.403 38.462 0.00 0.00 41.31 1.40
956 5167 2.919602 ACCACCACATCCTCCACTATTT 59.080 45.455 0.00 0.00 0.00 1.40
967 5178 3.458189 CTCCACTATTTCCCTTAGCGTG 58.542 50.000 0.00 0.00 0.00 5.34
1126 5339 8.201464 TCGGCAATGTATGTCTTCTTAATCTTA 58.799 33.333 0.00 0.00 0.00 2.10
1217 5436 4.674101 GCATCATGTTAAGCCGTTTAGCAA 60.674 41.667 0.00 0.00 36.29 3.91
2447 8429 2.999648 AGCAGCGCTGGAGGAAGA 61.000 61.111 36.47 0.00 37.57 2.87
3065 9053 4.344865 GGGAGGCAAGCAACCCGA 62.345 66.667 9.33 0.00 32.73 5.14
3091 9079 2.184579 GAGTACCAGCCTCCGCAC 59.815 66.667 0.00 0.00 37.52 5.34
3197 9189 8.303780 AGGTACTACACTACTTAATTTCTCCC 57.696 38.462 0.00 0.00 36.02 4.30
3198 9190 7.897565 AGGTACTACACTACTTAATTTCTCCCA 59.102 37.037 0.00 0.00 36.02 4.37
3199 9191 7.978414 GGTACTACACTACTTAATTTCTCCCAC 59.022 40.741 0.00 0.00 0.00 4.61
3200 9192 6.944096 ACTACACTACTTAATTTCTCCCACC 58.056 40.000 0.00 0.00 0.00 4.61
3201 9193 5.175388 ACACTACTTAATTTCTCCCACCC 57.825 43.478 0.00 0.00 0.00 4.61
3202 9194 4.850386 ACACTACTTAATTTCTCCCACCCT 59.150 41.667 0.00 0.00 0.00 4.34
3203 9195 5.312443 ACACTACTTAATTTCTCCCACCCTT 59.688 40.000 0.00 0.00 0.00 3.95
3215 9218 7.715267 TTCTCCCACCCTTTCCATTAATATA 57.285 36.000 0.00 0.00 0.00 0.86
3240 9250 2.954316 TGCATTGCATTGCTTCTTCAG 58.046 42.857 28.14 0.00 43.18 3.02
3255 9300 4.527509 TCTTCAGCTTCTCTTCATCGTT 57.472 40.909 0.00 0.00 0.00 3.85
3454 9499 2.507102 CTCGGCAAGACGCACGAT 60.507 61.111 0.00 0.00 45.17 3.73
3586 9637 2.772691 GCTCACCTACCCCGTCTCG 61.773 68.421 0.00 0.00 0.00 4.04
3603 9654 2.349755 GGTAGACAAGGCCGGCAA 59.650 61.111 30.85 0.41 0.00 4.52
3604 9655 1.077716 GGTAGACAAGGCCGGCAAT 60.078 57.895 30.85 14.02 0.00 3.56
3614 9665 3.197790 CCGGCAATGTCTCAGCGG 61.198 66.667 0.00 0.00 0.00 5.52
3646 9697 4.916041 TGAATTCTTCCCTGACACAGAT 57.084 40.909 7.05 0.00 32.44 2.90
3713 9982 1.098050 CACATAGCTCCAGGTTTGCC 58.902 55.000 0.00 0.00 0.00 4.52
3748 10030 2.952310 GTTGATTAATCCTGGCACCTCC 59.048 50.000 12.90 0.00 0.00 4.30
3750 10032 0.474184 ATTAATCCTGGCACCTCCGG 59.526 55.000 0.00 0.00 41.11 5.14
3755 10037 2.115266 CTGGCACCTCCGGGTTTT 59.885 61.111 0.00 0.00 44.73 2.43
3756 10038 1.530655 CTGGCACCTCCGGGTTTTT 60.531 57.895 0.00 0.00 44.73 1.94
3778 10060 1.680668 TTTTTGCGCATCGTGTTAGC 58.319 45.000 12.75 0.00 0.00 3.09
3827 10109 8.825667 TTTGCCTACAAATATTGTCCTTTTTC 57.174 30.769 0.00 0.00 44.12 2.29
3828 10110 7.775053 TGCCTACAAATATTGTCCTTTTTCT 57.225 32.000 0.00 0.00 44.12 2.52
3829 10111 8.189119 TGCCTACAAATATTGTCCTTTTTCTT 57.811 30.769 0.00 0.00 44.12 2.52
3830 10112 8.087750 TGCCTACAAATATTGTCCTTTTTCTTG 58.912 33.333 0.00 0.00 44.12 3.02
3831 10113 8.088365 GCCTACAAATATTGTCCTTTTTCTTGT 58.912 33.333 0.00 0.00 44.12 3.16
3832 10114 9.981114 CCTACAAATATTGTCCTTTTTCTTGTT 57.019 29.630 0.00 0.00 44.12 2.83
3840 10122 6.385649 TGTCCTTTTTCTTGTTATGTGTCC 57.614 37.500 0.00 0.00 0.00 4.02
3841 10123 5.008217 TGTCCTTTTTCTTGTTATGTGTCCG 59.992 40.000 0.00 0.00 0.00 4.79
3842 10124 4.023536 TCCTTTTTCTTGTTATGTGTCCGC 60.024 41.667 0.00 0.00 0.00 5.54
3843 10125 4.023193 CCTTTTTCTTGTTATGTGTCCGCT 60.023 41.667 0.00 0.00 0.00 5.52
3844 10126 4.742438 TTTTCTTGTTATGTGTCCGCTC 57.258 40.909 0.00 0.00 0.00 5.03
3845 10127 3.394674 TTCTTGTTATGTGTCCGCTCA 57.605 42.857 0.00 0.00 0.00 4.26
3846 10128 3.610040 TCTTGTTATGTGTCCGCTCAT 57.390 42.857 0.00 0.00 33.88 2.90
3847 10129 3.937814 TCTTGTTATGTGTCCGCTCATT 58.062 40.909 0.00 0.00 32.01 2.57
3848 10130 4.323417 TCTTGTTATGTGTCCGCTCATTT 58.677 39.130 0.00 0.00 32.01 2.32
3849 10131 4.759693 TCTTGTTATGTGTCCGCTCATTTT 59.240 37.500 0.00 0.00 32.01 1.82
3850 10132 4.678509 TGTTATGTGTCCGCTCATTTTC 57.321 40.909 0.00 0.00 32.01 2.29
3851 10133 4.323417 TGTTATGTGTCCGCTCATTTTCT 58.677 39.130 0.00 0.00 32.01 2.52
3852 10134 4.391830 TGTTATGTGTCCGCTCATTTTCTC 59.608 41.667 0.00 0.00 32.01 2.87
3853 10135 2.839486 TGTGTCCGCTCATTTTCTCT 57.161 45.000 0.00 0.00 0.00 3.10
3854 10136 3.953712 TGTGTCCGCTCATTTTCTCTA 57.046 42.857 0.00 0.00 0.00 2.43
3855 10137 4.265904 TGTGTCCGCTCATTTTCTCTAA 57.734 40.909 0.00 0.00 0.00 2.10
3856 10138 4.245660 TGTGTCCGCTCATTTTCTCTAAG 58.754 43.478 0.00 0.00 0.00 2.18
3857 10139 4.021456 TGTGTCCGCTCATTTTCTCTAAGA 60.021 41.667 0.00 0.00 0.00 2.10
3858 10140 5.112686 GTGTCCGCTCATTTTCTCTAAGAT 58.887 41.667 0.00 0.00 0.00 2.40
3859 10141 5.006165 GTGTCCGCTCATTTTCTCTAAGATG 59.994 44.000 0.00 0.00 0.00 2.90
3860 10142 4.025313 GTCCGCTCATTTTCTCTAAGATGC 60.025 45.833 0.00 0.00 0.00 3.91
3861 10143 4.125703 CCGCTCATTTTCTCTAAGATGCT 58.874 43.478 0.00 0.00 0.00 3.79
3862 10144 4.574013 CCGCTCATTTTCTCTAAGATGCTT 59.426 41.667 0.00 0.00 0.00 3.91
3863 10145 5.755375 CCGCTCATTTTCTCTAAGATGCTTA 59.245 40.000 0.00 0.00 0.00 3.09
3864 10146 6.426328 CCGCTCATTTTCTCTAAGATGCTTAT 59.574 38.462 0.00 0.00 0.00 1.73
3865 10147 7.600375 CCGCTCATTTTCTCTAAGATGCTTATA 59.400 37.037 0.00 0.00 0.00 0.98
3866 10148 9.149225 CGCTCATTTTCTCTAAGATGCTTATAT 57.851 33.333 0.00 0.00 0.00 0.86
3880 10162 9.547753 AAGATGCTTATATAAGTAAGGTGTGTG 57.452 33.333 20.89 0.00 35.75 3.82
3881 10163 8.705594 AGATGCTTATATAAGTAAGGTGTGTGT 58.294 33.333 20.89 1.63 35.75 3.72
3882 10164 8.662781 ATGCTTATATAAGTAAGGTGTGTGTG 57.337 34.615 20.89 0.00 35.75 3.82
3883 10165 6.537301 TGCTTATATAAGTAAGGTGTGTGTGC 59.463 38.462 20.89 5.70 35.75 4.57
3884 10166 6.537301 GCTTATATAAGTAAGGTGTGTGTGCA 59.463 38.462 20.89 0.00 35.75 4.57
3885 10167 7.226720 GCTTATATAAGTAAGGTGTGTGTGCAT 59.773 37.037 20.89 0.00 35.75 3.96
3886 10168 9.109393 CTTATATAAGTAAGGTGTGTGTGCATT 57.891 33.333 13.48 0.00 0.00 3.56
3887 10169 7.938140 ATATAAGTAAGGTGTGTGTGCATTT 57.062 32.000 0.00 0.00 0.00 2.32
3889 10171 5.432885 AAGTAAGGTGTGTGTGCATTTAC 57.567 39.130 0.00 0.00 0.00 2.01
3890 10172 4.456535 AGTAAGGTGTGTGTGCATTTACA 58.543 39.130 0.00 0.00 0.00 2.41
3891 10173 5.070001 AGTAAGGTGTGTGTGCATTTACAT 58.930 37.500 0.00 0.00 32.43 2.29
3892 10174 3.921119 AGGTGTGTGTGCATTTACATG 57.079 42.857 0.00 0.00 32.43 3.21
3893 10175 3.485394 AGGTGTGTGTGCATTTACATGA 58.515 40.909 0.00 0.00 32.43 3.07
3894 10176 3.503363 AGGTGTGTGTGCATTTACATGAG 59.497 43.478 0.00 0.00 32.43 2.90
3895 10177 3.253188 GGTGTGTGTGCATTTACATGAGT 59.747 43.478 0.00 0.00 32.43 3.41
3896 10178 4.221342 GTGTGTGTGCATTTACATGAGTG 58.779 43.478 0.00 0.00 32.43 3.51
3897 10179 4.024133 GTGTGTGTGCATTTACATGAGTGA 60.024 41.667 0.00 0.00 32.43 3.41
3898 10180 4.578105 TGTGTGTGCATTTACATGAGTGAA 59.422 37.500 0.00 0.00 32.43 3.18
3899 10181 5.241285 TGTGTGTGCATTTACATGAGTGAAT 59.759 36.000 0.00 0.00 34.62 2.57
3900 10182 6.151691 GTGTGTGCATTTACATGAGTGAATT 58.848 36.000 0.00 0.00 32.25 2.17
3901 10183 6.306356 GTGTGTGCATTTACATGAGTGAATTC 59.694 38.462 0.00 0.00 32.25 2.17
3902 10184 6.016443 TGTGTGCATTTACATGAGTGAATTCA 60.016 34.615 3.38 3.38 32.25 2.57
3903 10185 7.031372 GTGTGCATTTACATGAGTGAATTCAT 58.969 34.615 12.12 0.66 38.30 2.57
3913 10195 6.735130 CATGAGTGAATTCATGTGCATATGT 58.265 36.000 21.13 4.14 45.95 2.29
3914 10196 6.367686 TGAGTGAATTCATGTGCATATGTC 57.632 37.500 21.13 13.04 0.00 3.06
3915 10197 6.117488 TGAGTGAATTCATGTGCATATGTCT 58.883 36.000 21.13 8.63 0.00 3.41
3916 10198 6.037830 TGAGTGAATTCATGTGCATATGTCTG 59.962 38.462 21.13 0.00 0.00 3.51
3917 10199 6.117488 AGTGAATTCATGTGCATATGTCTGA 58.883 36.000 21.13 1.93 0.00 3.27
3918 10200 6.260271 AGTGAATTCATGTGCATATGTCTGAG 59.740 38.462 21.13 0.00 0.00 3.35
3919 10201 5.008316 TGAATTCATGTGCATATGTCTGAGC 59.992 40.000 21.13 9.23 0.00 4.26
3920 10202 2.476821 TCATGTGCATATGTCTGAGCG 58.523 47.619 21.13 0.00 0.00 5.03
3921 10203 2.159057 TCATGTGCATATGTCTGAGCGT 60.159 45.455 21.13 0.00 0.00 5.07
3922 10204 1.926561 TGTGCATATGTCTGAGCGTC 58.073 50.000 4.29 0.00 0.00 5.19
3923 10205 1.478105 TGTGCATATGTCTGAGCGTCT 59.522 47.619 4.29 0.00 0.00 4.18
3924 10206 2.687935 TGTGCATATGTCTGAGCGTCTA 59.312 45.455 4.29 0.00 0.00 2.59
3925 10207 3.046390 GTGCATATGTCTGAGCGTCTAC 58.954 50.000 4.29 0.00 0.00 2.59
3926 10208 2.287009 TGCATATGTCTGAGCGTCTACG 60.287 50.000 4.29 0.00 43.27 3.51
3927 10209 2.287069 GCATATGTCTGAGCGTCTACGT 60.287 50.000 4.29 0.00 42.22 3.57
3928 10210 3.059120 GCATATGTCTGAGCGTCTACGTA 60.059 47.826 4.29 0.00 42.22 3.57
3929 10211 4.378563 GCATATGTCTGAGCGTCTACGTAT 60.379 45.833 4.29 0.00 42.22 3.06
3930 10212 3.610786 ATGTCTGAGCGTCTACGTATG 57.389 47.619 4.24 0.00 42.22 2.39
3931 10213 2.353323 TGTCTGAGCGTCTACGTATGT 58.647 47.619 4.24 0.00 42.22 2.29
3932 10214 3.524541 TGTCTGAGCGTCTACGTATGTA 58.475 45.455 4.24 0.00 42.22 2.29
3933 10215 3.308053 TGTCTGAGCGTCTACGTATGTAC 59.692 47.826 4.24 0.00 42.22 2.90
3934 10216 3.555139 GTCTGAGCGTCTACGTATGTACT 59.445 47.826 4.24 0.00 42.22 2.73
3935 10217 3.554731 TCTGAGCGTCTACGTATGTACTG 59.445 47.826 4.24 0.00 42.22 2.74
3936 10218 3.264947 TGAGCGTCTACGTATGTACTGT 58.735 45.455 4.24 0.00 42.22 3.55
3937 10219 3.063045 TGAGCGTCTACGTATGTACTGTG 59.937 47.826 4.24 0.00 42.22 3.66
3938 10220 3.005554 AGCGTCTACGTATGTACTGTGT 58.994 45.455 4.24 0.00 42.22 3.72
3939 10221 3.438087 AGCGTCTACGTATGTACTGTGTT 59.562 43.478 4.24 0.00 42.22 3.32
3940 10222 4.631377 AGCGTCTACGTATGTACTGTGTTA 59.369 41.667 4.24 0.00 42.22 2.41
3941 10223 5.122239 AGCGTCTACGTATGTACTGTGTTAA 59.878 40.000 4.24 0.00 42.22 2.01
3942 10224 5.794945 GCGTCTACGTATGTACTGTGTTAAA 59.205 40.000 4.24 0.00 42.22 1.52
3943 10225 6.305399 GCGTCTACGTATGTACTGTGTTAAAA 59.695 38.462 4.24 0.00 42.22 1.52
3944 10226 7.148983 GCGTCTACGTATGTACTGTGTTAAAAA 60.149 37.037 4.24 0.00 42.22 1.94
4022 10304 8.803201 ATTTTCTGTTAGCTTGTTCTTTTAGC 57.197 30.769 0.00 0.00 35.16 3.09
4023 10305 5.591643 TCTGTTAGCTTGTTCTTTTAGCG 57.408 39.130 0.00 0.00 39.82 4.26
4024 10306 5.054477 TCTGTTAGCTTGTTCTTTTAGCGT 58.946 37.500 0.00 0.00 39.82 5.07
4025 10307 5.050363 TCTGTTAGCTTGTTCTTTTAGCGTG 60.050 40.000 0.00 0.00 39.82 5.34
4026 10308 4.812091 TGTTAGCTTGTTCTTTTAGCGTGA 59.188 37.500 0.00 0.00 39.82 4.35
4027 10309 5.050363 TGTTAGCTTGTTCTTTTAGCGTGAG 60.050 40.000 0.00 0.00 39.82 3.51
4040 10322 3.806257 CGTGAGCCGTGATTTATGC 57.194 52.632 0.00 0.00 0.00 3.14
4041 10323 1.006086 CGTGAGCCGTGATTTATGCA 58.994 50.000 0.00 0.00 0.00 3.96
4042 10324 1.396648 CGTGAGCCGTGATTTATGCAA 59.603 47.619 0.00 0.00 0.00 4.08
4043 10325 2.537529 CGTGAGCCGTGATTTATGCAAG 60.538 50.000 0.00 0.00 0.00 4.01
4044 10326 1.401552 TGAGCCGTGATTTATGCAAGC 59.598 47.619 0.00 0.00 0.00 4.01
4045 10327 0.740737 AGCCGTGATTTATGCAAGCC 59.259 50.000 0.00 0.00 0.00 4.35
4046 10328 0.455410 GCCGTGATTTATGCAAGCCA 59.545 50.000 0.00 0.00 0.00 4.75
4047 10329 1.798813 GCCGTGATTTATGCAAGCCAC 60.799 52.381 0.00 0.00 0.00 5.01
4048 10330 1.531677 CCGTGATTTATGCAAGCCACG 60.532 52.381 17.48 17.48 44.54 4.94
4049 10331 1.130373 CGTGATTTATGCAAGCCACGT 59.870 47.619 16.69 0.00 41.38 4.49
4050 10332 2.785679 GTGATTTATGCAAGCCACGTC 58.214 47.619 0.00 0.00 0.00 4.34
4051 10333 1.742831 TGATTTATGCAAGCCACGTCC 59.257 47.619 0.00 0.00 0.00 4.79
4052 10334 2.017049 GATTTATGCAAGCCACGTCCT 58.983 47.619 0.00 0.00 0.00 3.85
4053 10335 1.164411 TTTATGCAAGCCACGTCCTG 58.836 50.000 0.00 0.00 0.00 3.86
4054 10336 0.036164 TTATGCAAGCCACGTCCTGT 59.964 50.000 0.00 0.00 0.00 4.00
4055 10337 0.899019 TATGCAAGCCACGTCCTGTA 59.101 50.000 0.00 0.00 0.00 2.74
4056 10338 0.673644 ATGCAAGCCACGTCCTGTAC 60.674 55.000 0.00 0.00 0.00 2.90
4057 10339 2.033194 GCAAGCCACGTCCTGTACC 61.033 63.158 0.00 0.00 0.00 3.34
4058 10340 1.671742 CAAGCCACGTCCTGTACCT 59.328 57.895 0.00 0.00 0.00 3.08
4059 10341 0.389948 CAAGCCACGTCCTGTACCTC 60.390 60.000 0.00 0.00 0.00 3.85
4060 10342 1.874345 AAGCCACGTCCTGTACCTCG 61.874 60.000 0.00 0.00 0.00 4.63
4061 10343 2.338015 GCCACGTCCTGTACCTCGA 61.338 63.158 0.00 0.00 0.00 4.04
4062 10344 1.801332 CCACGTCCTGTACCTCGAG 59.199 63.158 5.13 5.13 0.00 4.04
4063 10345 1.136984 CACGTCCTGTACCTCGAGC 59.863 63.158 6.99 0.00 0.00 5.03
4064 10346 1.303074 ACGTCCTGTACCTCGAGCA 60.303 57.895 6.99 0.00 0.00 4.26
4065 10347 1.306642 ACGTCCTGTACCTCGAGCAG 61.307 60.000 6.99 9.20 0.00 4.24
4066 10348 1.306642 CGTCCTGTACCTCGAGCAGT 61.307 60.000 6.99 2.95 0.00 4.40
4067 10349 0.171455 GTCCTGTACCTCGAGCAGTG 59.829 60.000 6.99 4.16 0.00 3.66
4068 10350 1.153745 CCTGTACCTCGAGCAGTGC 60.154 63.158 7.13 7.13 0.00 4.40
4069 10351 1.599606 CCTGTACCTCGAGCAGTGCT 61.600 60.000 19.86 19.86 43.88 4.40
4070 10352 0.457509 CTGTACCTCGAGCAGTGCTG 60.458 60.000 25.35 14.90 39.88 4.41
4082 10364 4.033894 GTGCTGCTCACACGTTCT 57.966 55.556 0.00 0.00 44.98 3.01
4083 10365 3.195041 GTGCTGCTCACACGTTCTA 57.805 52.632 0.00 0.00 44.98 2.10
4084 10366 1.497991 GTGCTGCTCACACGTTCTAA 58.502 50.000 0.00 0.00 44.98 2.10
4085 10367 1.457303 GTGCTGCTCACACGTTCTAAG 59.543 52.381 0.00 0.00 44.98 2.18
4086 10368 1.068588 TGCTGCTCACACGTTCTAAGT 59.931 47.619 0.00 0.00 0.00 2.24
4087 10369 1.721926 GCTGCTCACACGTTCTAAGTC 59.278 52.381 0.00 0.00 0.00 3.01
4088 10370 2.329379 CTGCTCACACGTTCTAAGTCC 58.671 52.381 0.00 0.00 0.00 3.85
4089 10371 1.335597 TGCTCACACGTTCTAAGTCCG 60.336 52.381 0.00 0.00 0.00 4.79
4090 10372 1.068748 GCTCACACGTTCTAAGTCCGA 60.069 52.381 0.00 0.00 0.00 4.55
4091 10373 2.852748 CTCACACGTTCTAAGTCCGAG 58.147 52.381 0.00 0.00 0.00 4.63
4092 10374 1.538512 TCACACGTTCTAAGTCCGAGG 59.461 52.381 0.00 0.00 0.00 4.63
4093 10375 0.886563 ACACGTTCTAAGTCCGAGGG 59.113 55.000 0.00 0.00 0.00 4.30
4094 10376 1.171308 CACGTTCTAAGTCCGAGGGA 58.829 55.000 0.00 0.00 0.00 4.20
4105 10387 2.178521 CGAGGGACGGTGACTTCG 59.821 66.667 0.00 0.00 38.46 3.79
4106 10388 2.623915 CGAGGGACGGTGACTTCGT 61.624 63.158 5.99 0.00 44.03 3.85
4107 10389 1.300971 CGAGGGACGGTGACTTCGTA 61.301 60.000 5.99 0.00 41.22 3.43
4108 10390 0.883833 GAGGGACGGTGACTTCGTAA 59.116 55.000 0.00 0.00 41.22 3.18
4109 10391 1.270550 GAGGGACGGTGACTTCGTAAA 59.729 52.381 0.00 0.00 41.22 2.01
4110 10392 1.897802 AGGGACGGTGACTTCGTAAAT 59.102 47.619 0.00 0.00 41.22 1.40
4111 10393 2.094338 AGGGACGGTGACTTCGTAAATC 60.094 50.000 0.00 0.00 41.22 2.17
4112 10394 2.094338 GGGACGGTGACTTCGTAAATCT 60.094 50.000 0.00 0.00 41.22 2.40
4113 10395 3.177487 GGACGGTGACTTCGTAAATCTC 58.823 50.000 0.00 0.00 41.22 2.75
4114 10396 3.366679 GGACGGTGACTTCGTAAATCTCA 60.367 47.826 0.00 0.00 41.22 3.27
4115 10397 4.232221 GACGGTGACTTCGTAAATCTCAA 58.768 43.478 0.00 0.00 41.22 3.02
4116 10398 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
4117 10399 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
4118 10400 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
4119 10401 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
4120 10402 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
4121 10403 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
4122 10404 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
4125 10407 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
4128 10410 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
4132 10414 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
4153 10435 3.129462 CAGTCTCTCGAAGGTGCTCATAA 59.871 47.826 0.00 0.00 0.00 1.90
4154 10436 3.380004 AGTCTCTCGAAGGTGCTCATAAG 59.620 47.826 0.00 0.00 0.00 1.73
4155 10437 2.690497 TCTCTCGAAGGTGCTCATAAGG 59.310 50.000 0.00 0.00 0.00 2.69
4178 10461 2.917205 AGGGCACTAGTAGAAAAGGGT 58.083 47.619 3.59 0.00 0.00 4.34
4217 10500 1.906333 GCCCATTTGTCCCGGTTGT 60.906 57.895 0.00 0.00 0.00 3.32
4288 10571 3.143728 GTTCTTACACCAACCGGAACAT 58.856 45.455 9.46 0.00 34.88 2.71
4353 10652 1.884075 TTAGGCATCCACGCGTCAGT 61.884 55.000 9.86 0.00 0.00 3.41
4447 10781 6.601332 AGCTAGCTAATAGAGAGAAGTGTCT 58.399 40.000 17.69 0.00 32.78 3.41
4597 10935 4.138290 GAGAAGTGATATCGACCTCTCCA 58.862 47.826 15.77 0.00 0.00 3.86
4621 10959 1.002366 CGAGAGATTGGGCGAACAAG 58.998 55.000 0.00 0.00 33.23 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 205 3.976701 CTAGCACCCGGTTGGCCAG 62.977 68.421 5.11 0.00 37.83 4.85
95 214 3.315191 CCATTCAAATTACCTAGCACCCG 59.685 47.826 0.00 0.00 0.00 5.28
117 236 0.171903 CCACTTGCATGGCTAGTTGC 59.828 55.000 4.44 7.30 41.25 4.17
129 248 1.308069 ATCCATCGTGTGCCACTTGC 61.308 55.000 0.00 0.00 41.77 4.01
203 437 1.817099 CAAGGATCGAGGTGCAGCC 60.817 63.158 13.29 4.65 37.58 4.85
268 3003 0.179137 TGCACGCGTAGATTGAGAGG 60.179 55.000 13.44 0.00 0.00 3.69
337 4046 7.362229 CCAACAAGACTAACAAACAACCTGTTA 60.362 37.037 0.00 0.00 40.14 2.41
386 4211 6.889177 TGGCATGTAATAAATGTGGAGAAGAA 59.111 34.615 0.00 0.00 0.00 2.52
393 4219 6.146601 TGATGTGGCATGTAATAAATGTGG 57.853 37.500 0.00 0.00 0.00 4.17
420 4246 9.832445 TTGGTAAATTTGCCACTTAAAACATAA 57.168 25.926 25.49 5.75 42.80 1.90
426 4252 6.049790 GGTGTTGGTAAATTTGCCACTTAAA 58.950 36.000 25.49 9.74 42.80 1.52
430 4256 3.304829 AGGTGTTGGTAAATTTGCCACT 58.695 40.909 25.49 16.80 42.80 4.00
460 4286 4.041567 TGAACTTAGGGCATCTTCAACAGA 59.958 41.667 0.00 0.00 35.33 3.41
467 4293 2.619074 GGCAGTGAACTTAGGGCATCTT 60.619 50.000 0.00 0.00 0.00 2.40
479 4305 6.601741 TCAAATGAAAAATTGGCAGTGAAC 57.398 33.333 0.00 0.00 0.00 3.18
481 4307 7.603404 CCTATTCAAATGAAAAATTGGCAGTGA 59.397 33.333 0.00 0.00 37.61 3.41
516 4410 3.198068 GCTAGTTGCCTCAATCGATTCA 58.802 45.455 7.92 0.00 35.15 2.57
588 4482 5.079643 AGCTGTGGTTCCTATTCAAATTGT 58.920 37.500 0.00 0.00 0.00 2.71
589 4483 5.649782 AGCTGTGGTTCCTATTCAAATTG 57.350 39.130 0.00 0.00 0.00 2.32
644 4538 1.133976 GGGCTAGTCGTGGTAGGTCTA 60.134 57.143 0.00 0.00 0.00 2.59
668 4562 9.110617 GTTGTTTCTTCTATAAAACTAAACCGC 57.889 33.333 0.00 0.00 36.54 5.68
777 4691 7.951157 AGAGGACTAGGAGGTACTTTAGATA 57.049 40.000 0.00 0.00 41.55 1.98
956 5167 1.509463 CAGTACGCACGCTAAGGGA 59.491 57.895 0.00 0.00 0.00 4.20
967 5178 0.179081 GTCCTTGGATCCCAGTACGC 60.179 60.000 9.90 0.00 33.81 4.42
995 5206 3.424300 GCAGATGCGCCATTGCTA 58.576 55.556 16.70 0.00 33.88 3.49
1141 5354 6.787085 ATAGATAGCACGCTATTTCAAACC 57.213 37.500 12.62 0.00 39.15 3.27
1188 5407 1.133668 GGCTTAACATGATGCCCCTCT 60.134 52.381 0.00 0.00 39.49 3.69
1217 5436 5.970023 GCACAATCTACGTACGAGAATTAGT 59.030 40.000 24.41 13.26 0.00 2.24
2008 7972 4.803426 GCCGTCTGCTCGTCCCTG 62.803 72.222 0.00 0.00 36.87 4.45
2196 8178 0.820871 GAGGAAGCTGACGATCTGGT 59.179 55.000 0.00 0.00 0.00 4.00
2470 8452 4.057428 GCTGCGAGGTCGACCAGT 62.057 66.667 35.00 17.11 43.02 4.00
3064 9052 3.718210 CTGGTACTCGCCGCCCTTC 62.718 68.421 0.00 0.00 0.00 3.46
3065 9053 3.771160 CTGGTACTCGCCGCCCTT 61.771 66.667 0.00 0.00 0.00 3.95
3097 9085 2.125961 ATAGTCCGTCCCGTCCTGC 61.126 63.158 0.00 0.00 0.00 4.85
3179 9171 4.850386 AGGGTGGGAGAAATTAAGTAGTGT 59.150 41.667 0.00 0.00 0.00 3.55
3190 9182 4.750833 TTAATGGAAAGGGTGGGAGAAA 57.249 40.909 0.00 0.00 0.00 2.52
3191 9183 4.965283 ATTAATGGAAAGGGTGGGAGAA 57.035 40.909 0.00 0.00 0.00 2.87
3192 9184 7.698912 CATATATTAATGGAAAGGGTGGGAGA 58.301 38.462 0.00 0.00 0.00 3.71
3194 9186 6.046643 AGCATATATTAATGGAAAGGGTGGGA 59.953 38.462 0.00 0.00 0.00 4.37
3196 9188 7.605449 CAAGCATATATTAATGGAAAGGGTGG 58.395 38.462 0.00 0.00 0.00 4.61
3197 9189 7.092716 GCAAGCATATATTAATGGAAAGGGTG 58.907 38.462 0.00 0.00 0.00 4.61
3198 9190 6.782000 TGCAAGCATATATTAATGGAAAGGGT 59.218 34.615 0.00 0.00 0.00 4.34
3199 9191 7.230849 TGCAAGCATATATTAATGGAAAGGG 57.769 36.000 0.00 0.00 0.00 3.95
3200 9192 9.146984 CAATGCAAGCATATATTAATGGAAAGG 57.853 33.333 8.12 0.00 35.31 3.11
3201 9193 8.653338 GCAATGCAAGCATATATTAATGGAAAG 58.347 33.333 8.12 0.00 35.31 2.62
3202 9194 8.148999 TGCAATGCAAGCATATATTAATGGAAA 58.851 29.630 5.01 0.00 37.02 3.13
3203 9195 7.668492 TGCAATGCAAGCATATATTAATGGAA 58.332 30.769 5.01 0.00 37.02 3.53
3240 9250 3.997021 TGAAGGAAACGATGAAGAGAAGC 59.003 43.478 0.00 0.00 0.00 3.86
3250 9260 3.679980 CGTCATCAACTGAAGGAAACGAT 59.320 43.478 0.00 0.00 35.07 3.73
3255 9300 4.279922 TGTACTCGTCATCAACTGAAGGAA 59.720 41.667 0.00 0.00 35.07 3.36
3472 9517 1.079543 CTGCACGCACTCTAGGCTT 60.080 57.895 0.00 0.00 0.00 4.35
3586 9637 1.077716 ATTGCCGGCCTTGTCTACC 60.078 57.895 26.77 0.00 0.00 3.18
3603 9654 2.573869 CCGTGACCGCTGAGACAT 59.426 61.111 0.00 0.00 0.00 3.06
3604 9655 3.680786 CCCGTGACCGCTGAGACA 61.681 66.667 0.00 0.00 0.00 3.41
3646 9697 4.600576 TCACCAAGCACGCGAGCA 62.601 61.111 29.45 5.55 36.85 4.26
3713 9982 5.856126 TTAATCAACACAAACTAGGAGCG 57.144 39.130 0.00 0.00 0.00 5.03
3764 10046 1.772182 AGATAGCTAACACGATGCGC 58.228 50.000 0.00 0.00 0.00 6.09
3802 10084 8.646900 AGAAAAAGGACAATATTTGTAGGCAAA 58.353 29.630 0.00 0.00 45.52 3.68
3803 10085 8.189119 AGAAAAAGGACAATATTTGTAGGCAA 57.811 30.769 0.00 0.00 45.52 4.52
3804 10086 7.775053 AGAAAAAGGACAATATTTGTAGGCA 57.225 32.000 0.00 0.00 45.52 4.75
3805 10087 8.088365 ACAAGAAAAAGGACAATATTTGTAGGC 58.912 33.333 0.00 0.00 45.52 3.93
3806 10088 9.981114 AACAAGAAAAAGGACAATATTTGTAGG 57.019 29.630 0.00 0.00 45.52 3.18
3814 10096 8.573035 GGACACATAACAAGAAAAAGGACAATA 58.427 33.333 0.00 0.00 0.00 1.90
3815 10097 7.433680 GGACACATAACAAGAAAAAGGACAAT 58.566 34.615 0.00 0.00 0.00 2.71
3816 10098 6.459024 CGGACACATAACAAGAAAAAGGACAA 60.459 38.462 0.00 0.00 0.00 3.18
3817 10099 5.008217 CGGACACATAACAAGAAAAAGGACA 59.992 40.000 0.00 0.00 0.00 4.02
3818 10100 5.449304 CGGACACATAACAAGAAAAAGGAC 58.551 41.667 0.00 0.00 0.00 3.85
3819 10101 4.023536 GCGGACACATAACAAGAAAAAGGA 60.024 41.667 0.00 0.00 0.00 3.36
3820 10102 4.023193 AGCGGACACATAACAAGAAAAAGG 60.023 41.667 0.00 0.00 0.00 3.11
3821 10103 5.108385 AGCGGACACATAACAAGAAAAAG 57.892 39.130 0.00 0.00 0.00 2.27
3822 10104 4.576873 TGAGCGGACACATAACAAGAAAAA 59.423 37.500 0.00 0.00 0.00 1.94
3823 10105 4.130857 TGAGCGGACACATAACAAGAAAA 58.869 39.130 0.00 0.00 0.00 2.29
3824 10106 3.734463 TGAGCGGACACATAACAAGAAA 58.266 40.909 0.00 0.00 0.00 2.52
3825 10107 3.394674 TGAGCGGACACATAACAAGAA 57.605 42.857 0.00 0.00 0.00 2.52
3826 10108 3.610040 ATGAGCGGACACATAACAAGA 57.390 42.857 0.00 0.00 0.00 3.02
3827 10109 4.685169 AAATGAGCGGACACATAACAAG 57.315 40.909 0.00 0.00 0.00 3.16
3828 10110 4.759693 AGAAAATGAGCGGACACATAACAA 59.240 37.500 0.00 0.00 0.00 2.83
3829 10111 4.323417 AGAAAATGAGCGGACACATAACA 58.677 39.130 0.00 0.00 0.00 2.41
3830 10112 4.631813 AGAGAAAATGAGCGGACACATAAC 59.368 41.667 0.00 0.00 0.00 1.89
3831 10113 4.832248 AGAGAAAATGAGCGGACACATAA 58.168 39.130 0.00 0.00 0.00 1.90
3832 10114 4.471904 AGAGAAAATGAGCGGACACATA 57.528 40.909 0.00 0.00 0.00 2.29
3833 10115 3.340814 AGAGAAAATGAGCGGACACAT 57.659 42.857 0.00 0.00 0.00 3.21
3834 10116 2.839486 AGAGAAAATGAGCGGACACA 57.161 45.000 0.00 0.00 0.00 3.72
3835 10117 4.495422 TCTTAGAGAAAATGAGCGGACAC 58.505 43.478 0.00 0.00 0.00 3.67
3836 10118 4.801330 TCTTAGAGAAAATGAGCGGACA 57.199 40.909 0.00 0.00 0.00 4.02
3837 10119 4.025313 GCATCTTAGAGAAAATGAGCGGAC 60.025 45.833 0.00 0.00 0.00 4.79
3838 10120 4.122776 GCATCTTAGAGAAAATGAGCGGA 58.877 43.478 0.00 0.00 0.00 5.54
3839 10121 4.125703 AGCATCTTAGAGAAAATGAGCGG 58.874 43.478 0.00 0.00 0.00 5.52
3840 10122 5.731599 AAGCATCTTAGAGAAAATGAGCG 57.268 39.130 0.00 0.00 0.00 5.03
3854 10136 9.547753 CACACACCTTACTTATATAAGCATCTT 57.452 33.333 20.24 5.30 36.79 2.40
3855 10137 8.705594 ACACACACCTTACTTATATAAGCATCT 58.294 33.333 20.24 5.64 36.79 2.90
3856 10138 8.765219 CACACACACCTTACTTATATAAGCATC 58.235 37.037 20.24 0.00 36.79 3.91
3857 10139 7.226720 GCACACACACCTTACTTATATAAGCAT 59.773 37.037 20.24 6.62 36.79 3.79
3858 10140 6.537301 GCACACACACCTTACTTATATAAGCA 59.463 38.462 20.24 6.84 36.79 3.91
3859 10141 6.537301 TGCACACACACCTTACTTATATAAGC 59.463 38.462 20.24 4.86 36.79 3.09
3860 10142 8.662781 ATGCACACACACCTTACTTATATAAG 57.337 34.615 18.99 18.99 39.18 1.73
3861 10143 9.456147 AAATGCACACACACCTTACTTATATAA 57.544 29.630 0.00 0.00 0.00 0.98
3863 10145 7.938140 AAATGCACACACACCTTACTTATAT 57.062 32.000 0.00 0.00 0.00 0.86
3864 10146 7.878644 TGTAAATGCACACACACCTTACTTATA 59.121 33.333 0.00 0.00 0.00 0.98
3865 10147 6.712998 TGTAAATGCACACACACCTTACTTAT 59.287 34.615 0.00 0.00 0.00 1.73
3866 10148 6.056236 TGTAAATGCACACACACCTTACTTA 58.944 36.000 0.00 0.00 0.00 2.24
3867 10149 4.884744 TGTAAATGCACACACACCTTACTT 59.115 37.500 0.00 0.00 0.00 2.24
3868 10150 4.456535 TGTAAATGCACACACACCTTACT 58.543 39.130 0.00 0.00 0.00 2.24
3869 10151 4.822036 TGTAAATGCACACACACCTTAC 57.178 40.909 0.00 0.00 0.00 2.34
3870 10152 5.066593 TCATGTAAATGCACACACACCTTA 58.933 37.500 0.00 0.00 0.00 2.69
3871 10153 3.888323 TCATGTAAATGCACACACACCTT 59.112 39.130 0.00 0.00 0.00 3.50
3872 10154 3.485394 TCATGTAAATGCACACACACCT 58.515 40.909 0.00 0.00 0.00 4.00
3873 10155 3.253188 ACTCATGTAAATGCACACACACC 59.747 43.478 0.00 0.00 0.00 4.16
3874 10156 4.024133 TCACTCATGTAAATGCACACACAC 60.024 41.667 0.00 0.00 0.00 3.82
3875 10157 4.133078 TCACTCATGTAAATGCACACACA 58.867 39.130 0.00 0.00 0.00 3.72
3876 10158 4.747540 TCACTCATGTAAATGCACACAC 57.252 40.909 0.00 0.00 0.00 3.82
3877 10159 5.963176 ATTCACTCATGTAAATGCACACA 57.037 34.783 0.00 0.00 0.00 3.72
3878 10160 6.380995 TGAATTCACTCATGTAAATGCACAC 58.619 36.000 3.38 0.00 0.00 3.82
3879 10161 6.572167 TGAATTCACTCATGTAAATGCACA 57.428 33.333 3.38 0.00 0.00 4.57
3880 10162 7.445900 CATGAATTCACTCATGTAAATGCAC 57.554 36.000 11.07 0.00 45.12 4.57
3890 10172 6.771267 AGACATATGCACATGAATTCACTCAT 59.229 34.615 12.92 13.07 36.45 2.90
3891 10173 6.037830 CAGACATATGCACATGAATTCACTCA 59.962 38.462 12.92 6.74 0.00 3.41
3892 10174 6.259387 TCAGACATATGCACATGAATTCACTC 59.741 38.462 12.92 0.00 0.00 3.51
3893 10175 6.117488 TCAGACATATGCACATGAATTCACT 58.883 36.000 12.92 0.00 0.00 3.41
3894 10176 6.367686 TCAGACATATGCACATGAATTCAC 57.632 37.500 12.92 0.00 0.00 3.18
3895 10177 5.008316 GCTCAGACATATGCACATGAATTCA 59.992 40.000 12.92 11.26 0.00 2.57
3896 10178 5.450171 GCTCAGACATATGCACATGAATTC 58.550 41.667 12.92 0.00 0.00 2.17
3897 10179 4.024302 CGCTCAGACATATGCACATGAATT 60.024 41.667 12.92 0.00 0.00 2.17
3898 10180 3.497262 CGCTCAGACATATGCACATGAAT 59.503 43.478 12.92 0.00 0.00 2.57
3899 10181 2.867975 CGCTCAGACATATGCACATGAA 59.132 45.455 12.92 0.00 0.00 2.57
3900 10182 2.159057 ACGCTCAGACATATGCACATGA 60.159 45.455 12.92 1.45 0.00 3.07
3901 10183 2.207590 ACGCTCAGACATATGCACATG 58.792 47.619 2.71 2.71 0.00 3.21
3902 10184 2.102084 AGACGCTCAGACATATGCACAT 59.898 45.455 1.58 0.00 0.00 3.21
3903 10185 1.478105 AGACGCTCAGACATATGCACA 59.522 47.619 1.58 0.00 0.00 4.57
3904 10186 2.215907 AGACGCTCAGACATATGCAC 57.784 50.000 1.58 0.00 0.00 4.57
3905 10187 2.287009 CGTAGACGCTCAGACATATGCA 60.287 50.000 1.58 0.00 0.00 3.96
3906 10188 2.287069 ACGTAGACGCTCAGACATATGC 60.287 50.000 1.58 0.00 44.43 3.14
3907 10189 3.610786 ACGTAGACGCTCAGACATATG 57.389 47.619 0.00 0.00 44.43 1.78
3908 10190 4.755629 ACATACGTAGACGCTCAGACATAT 59.244 41.667 0.08 0.00 44.43 1.78
3909 10191 4.124970 ACATACGTAGACGCTCAGACATA 58.875 43.478 0.08 0.00 44.43 2.29
3910 10192 2.943690 ACATACGTAGACGCTCAGACAT 59.056 45.455 0.08 0.00 44.43 3.06
3911 10193 2.353323 ACATACGTAGACGCTCAGACA 58.647 47.619 0.08 0.00 44.43 3.41
3912 10194 3.555139 AGTACATACGTAGACGCTCAGAC 59.445 47.826 0.08 0.00 44.43 3.51
3913 10195 3.554731 CAGTACATACGTAGACGCTCAGA 59.445 47.826 0.08 0.00 44.43 3.27
3914 10196 3.309138 ACAGTACATACGTAGACGCTCAG 59.691 47.826 0.08 0.00 44.43 3.35
3915 10197 3.063045 CACAGTACATACGTAGACGCTCA 59.937 47.826 0.08 0.00 44.43 4.26
3916 10198 3.063180 ACACAGTACATACGTAGACGCTC 59.937 47.826 0.08 0.00 44.43 5.03
3917 10199 3.005554 ACACAGTACATACGTAGACGCT 58.994 45.455 0.08 0.00 44.43 5.07
3918 10200 3.395858 ACACAGTACATACGTAGACGC 57.604 47.619 0.08 0.00 44.43 5.19
3919 10201 7.780253 TTTTAACACAGTACATACGTAGACG 57.220 36.000 0.08 0.00 46.33 4.18
4002 10284 5.050363 TCACGCTAAAAGAACAAGCTAACAG 60.050 40.000 0.00 0.00 34.03 3.16
4004 10286 5.338614 TCACGCTAAAAGAACAAGCTAAC 57.661 39.130 0.00 0.00 34.03 2.34
4005 10287 4.084013 GCTCACGCTAAAAGAACAAGCTAA 60.084 41.667 0.00 0.00 34.03 3.09
4007 10289 2.224314 GCTCACGCTAAAAGAACAAGCT 59.776 45.455 0.00 0.00 34.03 3.74
4008 10290 2.575363 GCTCACGCTAAAAGAACAAGC 58.425 47.619 0.00 0.00 0.00 4.01
4009 10291 2.411547 CGGCTCACGCTAAAAGAACAAG 60.412 50.000 0.00 0.00 36.09 3.16
4010 10292 1.529438 CGGCTCACGCTAAAAGAACAA 59.471 47.619 0.00 0.00 36.09 2.83
4011 10293 1.144969 CGGCTCACGCTAAAAGAACA 58.855 50.000 0.00 0.00 36.09 3.18
4012 10294 3.949313 CGGCTCACGCTAAAAGAAC 57.051 52.632 0.00 0.00 36.09 3.01
4023 10305 2.792542 GCTTGCATAAATCACGGCTCAC 60.793 50.000 0.00 0.00 0.00 3.51
4024 10306 1.401552 GCTTGCATAAATCACGGCTCA 59.598 47.619 0.00 0.00 0.00 4.26
4025 10307 1.268743 GGCTTGCATAAATCACGGCTC 60.269 52.381 0.00 0.00 0.00 4.70
4026 10308 0.740737 GGCTTGCATAAATCACGGCT 59.259 50.000 0.00 0.00 0.00 5.52
4027 10309 0.455410 TGGCTTGCATAAATCACGGC 59.545 50.000 0.00 0.00 0.00 5.68
4028 10310 1.531677 CGTGGCTTGCATAAATCACGG 60.532 52.381 15.70 3.75 39.54 4.94
4029 10311 1.130373 ACGTGGCTTGCATAAATCACG 59.870 47.619 19.38 19.38 44.18 4.35
4030 10312 2.477863 GGACGTGGCTTGCATAAATCAC 60.478 50.000 0.00 0.00 0.00 3.06
4031 10313 1.742831 GGACGTGGCTTGCATAAATCA 59.257 47.619 0.00 0.00 0.00 2.57
4032 10314 2.017049 AGGACGTGGCTTGCATAAATC 58.983 47.619 0.00 0.00 0.00 2.17
4033 10315 1.745087 CAGGACGTGGCTTGCATAAAT 59.255 47.619 0.00 0.00 0.00 1.40
4034 10316 1.164411 CAGGACGTGGCTTGCATAAA 58.836 50.000 0.00 0.00 0.00 1.40
4035 10317 0.036164 ACAGGACGTGGCTTGCATAA 59.964 50.000 0.00 0.00 0.00 1.90
4036 10318 0.899019 TACAGGACGTGGCTTGCATA 59.101 50.000 0.00 0.00 0.00 3.14
4037 10319 0.673644 GTACAGGACGTGGCTTGCAT 60.674 55.000 0.00 0.00 0.00 3.96
4038 10320 1.301401 GTACAGGACGTGGCTTGCA 60.301 57.895 0.00 0.00 0.00 4.08
4039 10321 2.033194 GGTACAGGACGTGGCTTGC 61.033 63.158 0.00 0.00 0.00 4.01
4040 10322 0.389948 GAGGTACAGGACGTGGCTTG 60.390 60.000 0.00 0.00 0.00 4.01
4041 10323 1.874345 CGAGGTACAGGACGTGGCTT 61.874 60.000 0.00 0.00 0.00 4.35
4042 10324 2.341101 CGAGGTACAGGACGTGGCT 61.341 63.158 0.00 0.00 0.00 4.75
4043 10325 2.181021 CGAGGTACAGGACGTGGC 59.819 66.667 0.00 0.00 0.00 5.01
4044 10326 1.801332 CTCGAGGTACAGGACGTGG 59.199 63.158 3.91 0.00 0.00 4.94
4045 10327 1.136984 GCTCGAGGTACAGGACGTG 59.863 63.158 15.58 0.00 0.00 4.49
4046 10328 1.303074 TGCTCGAGGTACAGGACGT 60.303 57.895 15.58 0.00 0.00 4.34
4047 10329 1.306642 ACTGCTCGAGGTACAGGACG 61.307 60.000 15.58 0.00 35.70 4.79
4048 10330 0.171455 CACTGCTCGAGGTACAGGAC 59.829 60.000 15.58 0.00 35.70 3.85
4049 10331 1.595993 GCACTGCTCGAGGTACAGGA 61.596 60.000 15.58 0.00 35.70 3.86
4050 10332 1.153745 GCACTGCTCGAGGTACAGG 60.154 63.158 15.58 8.25 35.70 4.00
4051 10333 0.457509 CAGCACTGCTCGAGGTACAG 60.458 60.000 15.58 15.04 36.40 2.74
4052 10334 1.586541 CAGCACTGCTCGAGGTACA 59.413 57.895 15.58 2.61 36.40 2.90
4053 10335 4.485554 CAGCACTGCTCGAGGTAC 57.514 61.111 15.58 0.00 36.40 3.34
4066 10348 1.068588 ACTTAGAACGTGTGAGCAGCA 59.931 47.619 0.00 0.00 0.00 4.41
4067 10349 1.721926 GACTTAGAACGTGTGAGCAGC 59.278 52.381 0.00 0.00 0.00 5.25
4068 10350 2.329379 GGACTTAGAACGTGTGAGCAG 58.671 52.381 0.00 0.00 0.00 4.24
4069 10351 1.335597 CGGACTTAGAACGTGTGAGCA 60.336 52.381 0.00 0.00 0.00 4.26
4070 10352 1.068748 TCGGACTTAGAACGTGTGAGC 60.069 52.381 0.00 0.00 0.00 4.26
4071 10353 2.414293 CCTCGGACTTAGAACGTGTGAG 60.414 54.545 0.00 0.00 0.00 3.51
4072 10354 1.538512 CCTCGGACTTAGAACGTGTGA 59.461 52.381 0.00 0.00 0.00 3.58
4073 10355 1.402456 CCCTCGGACTTAGAACGTGTG 60.402 57.143 0.00 0.00 0.00 3.82
4074 10356 0.886563 CCCTCGGACTTAGAACGTGT 59.113 55.000 0.00 0.00 0.00 4.49
4075 10357 1.171308 TCCCTCGGACTTAGAACGTG 58.829 55.000 0.00 0.00 0.00 4.49
4076 10358 3.658398 TCCCTCGGACTTAGAACGT 57.342 52.632 0.00 0.00 0.00 3.99
4088 10370 1.300971 TACGAAGTCACCGTCCCTCG 61.301 60.000 0.00 0.00 43.93 4.63
4089 10371 0.883833 TTACGAAGTCACCGTCCCTC 59.116 55.000 0.00 0.00 43.93 4.30
4090 10372 1.331214 TTTACGAAGTCACCGTCCCT 58.669 50.000 0.00 0.00 43.93 4.20
4091 10373 2.094338 AGATTTACGAAGTCACCGTCCC 60.094 50.000 0.00 0.00 43.93 4.46
4092 10374 3.177487 GAGATTTACGAAGTCACCGTCC 58.823 50.000 0.00 0.00 43.93 4.79
4093 10375 3.829948 TGAGATTTACGAAGTCACCGTC 58.170 45.455 0.00 0.00 43.93 4.79
4094 10376 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
4095 10377 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
4096 10378 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
4097 10379 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
4098 10380 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
4099 10381 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
4100 10382 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
4101 10383 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
4102 10384 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
4103 10385 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
4104 10386 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
4105 10387 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
4106 10388 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
4107 10389 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
4108 10390 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
4109 10391 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
4110 10392 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
4111 10393 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
4112 10394 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
4113 10395 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
4114 10396 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
4115 10397 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
4116 10398 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
4117 10399 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
4118 10400 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
4119 10401 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
4120 10402 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
4121 10403 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
4122 10404 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
4125 10407 1.431440 CTTCGAGAGACTGAGCCGG 59.569 63.158 0.00 0.00 41.84 6.13
4128 10410 0.457681 GCACCTTCGAGAGACTGAGC 60.458 60.000 0.00 0.00 41.84 4.26
4132 10414 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
4153 10435 3.771071 TTTCTACTAGTGCCCTACCCT 57.229 47.619 5.39 0.00 0.00 4.34
4154 10436 3.134262 CCTTTTCTACTAGTGCCCTACCC 59.866 52.174 5.39 0.00 0.00 3.69
4155 10437 3.134262 CCCTTTTCTACTAGTGCCCTACC 59.866 52.174 5.39 0.00 0.00 3.18
4178 10461 2.613474 CCTTACGAACCGGGACAAATGA 60.613 50.000 6.32 0.00 0.00 2.57
4217 10500 0.474273 ACCCTTTAGTCCCGGTTCCA 60.474 55.000 0.00 0.00 0.00 3.53
4284 10567 0.107214 CACGTGGAGGCCCATATGTT 60.107 55.000 7.95 0.00 45.68 2.71
4288 10571 3.792736 GCCACGTGGAGGCCCATA 61.793 66.667 38.30 0.00 46.50 2.74
4338 10622 2.517450 GCTACTGACGCGTGGATGC 61.517 63.158 20.70 10.91 0.00 3.91
4386 10686 1.203376 CCCCCAAAACCCCTAAACCAT 60.203 52.381 0.00 0.00 0.00 3.55
4447 10781 2.832129 ACCAAGCACGGAGATAAGAGAA 59.168 45.455 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.