Multiple sequence alignment - TraesCS1D01G035500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G035500 chr1D 100.000 2023 0 0 749 2771 16387000 16384978 0.000000e+00 3736.0
1 TraesCS1D01G035500 chr1D 82.286 971 172 0 776 1746 325554334 325555304 0.000000e+00 841.0
2 TraesCS1D01G035500 chr1D 100.000 423 0 0 1 423 16387748 16387326 0.000000e+00 782.0
3 TraesCS1D01G035500 chr1D 85.185 81 8 1 1 81 16393155 16393079 2.290000e-11 80.5
4 TraesCS1D01G035500 chr1D 83.951 81 9 1 1 81 16267384 16267460 1.060000e-09 75.0
5 TraesCS1D01G035500 chr7D 98.270 2023 22 2 749 2771 229792839 229794848 0.000000e+00 3530.0
6 TraesCS1D01G035500 chr6D 97.380 2023 42 1 749 2771 183951173 183953184 0.000000e+00 3432.0
7 TraesCS1D01G035500 chr4A 96.688 2023 56 1 749 2771 43695748 43693737 0.000000e+00 3354.0
8 TraesCS1D01G035500 chr7A 95.945 1381 42 3 749 2127 20700026 20701394 0.000000e+00 2228.0
9 TraesCS1D01G035500 chr7A 96.721 732 24 0 2040 2771 20701379 20702110 0.000000e+00 1219.0
10 TraesCS1D01G035500 chr1B 90.805 696 64 0 1079 1774 398523728 398523033 0.000000e+00 931.0
11 TraesCS1D01G035500 chr1B 90.000 740 40 11 2050 2771 398393671 398392948 0.000000e+00 926.0
12 TraesCS1D01G035500 chr1B 80.758 343 30 17 1808 2126 398522941 398522611 4.610000e-58 235.0
13 TraesCS1D01G035500 chr1B 90.000 180 16 2 904 1081 398335954 398336133 5.970000e-57 231.0
14 TraesCS1D01G035500 chr1B 91.667 72 5 1 847 918 398334270 398334340 6.320000e-17 99.0
15 TraesCS1D01G035500 chr1B 84.810 79 8 2 3 81 30378969 30379043 2.960000e-10 76.8
16 TraesCS1D01G035500 chr2A 80.642 1028 181 15 749 1771 771874347 771875361 0.000000e+00 780.0
17 TraesCS1D01G035500 chr2D 79.960 988 189 8 794 1777 35331639 35330657 0.000000e+00 719.0
18 TraesCS1D01G035500 chr7B 76.432 908 204 10 779 1680 292076932 292077835 1.490000e-132 483.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G035500 chr1D 16384978 16387748 2770 True 2259.0 3736 100.0000 1 2771 2 chr1D.!!$R2 2770
1 TraesCS1D01G035500 chr1D 325554334 325555304 970 False 841.0 841 82.2860 776 1746 1 chr1D.!!$F2 970
2 TraesCS1D01G035500 chr7D 229792839 229794848 2009 False 3530.0 3530 98.2700 749 2771 1 chr7D.!!$F1 2022
3 TraesCS1D01G035500 chr6D 183951173 183953184 2011 False 3432.0 3432 97.3800 749 2771 1 chr6D.!!$F1 2022
4 TraesCS1D01G035500 chr4A 43693737 43695748 2011 True 3354.0 3354 96.6880 749 2771 1 chr4A.!!$R1 2022
5 TraesCS1D01G035500 chr7A 20700026 20702110 2084 False 1723.5 2228 96.3330 749 2771 2 chr7A.!!$F1 2022
6 TraesCS1D01G035500 chr1B 398392948 398393671 723 True 926.0 926 90.0000 2050 2771 1 chr1B.!!$R1 721
7 TraesCS1D01G035500 chr1B 398522611 398523728 1117 True 583.0 931 85.7815 1079 2126 2 chr1B.!!$R2 1047
8 TraesCS1D01G035500 chr2A 771874347 771875361 1014 False 780.0 780 80.6420 749 1771 1 chr2A.!!$F1 1022
9 TraesCS1D01G035500 chr2D 35330657 35331639 982 True 719.0 719 79.9600 794 1777 1 chr2D.!!$R1 983
10 TraesCS1D01G035500 chr7B 292076932 292077835 903 False 483.0 483 76.4320 779 1680 1 chr7B.!!$F1 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.036483 TGCTTGTCTCCTTGCGCATA 60.036 50.0 12.75 0.83 0.0 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 1921 0.033781 GGCACACATTTGGCACACAT 59.966 50.0 0.0 0.0 41.65 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.596338 TCCTCGTGCTCCGTCACA 60.596 61.111 0.00 0.00 36.80 3.58
22 23 3.538841 GTGCTCCGTCACACGAAG 58.461 61.111 0.00 0.00 46.05 3.79
25 26 3.538841 CTCCGTCACACGAAGCAC 58.461 61.111 0.00 0.00 46.05 4.40
26 27 1.007271 CTCCGTCACACGAAGCACT 60.007 57.895 0.00 0.00 46.05 4.40
27 28 0.240145 CTCCGTCACACGAAGCACTA 59.760 55.000 0.00 0.00 46.05 2.74
28 29 0.240145 TCCGTCACACGAAGCACTAG 59.760 55.000 0.00 0.00 46.05 2.57
29 30 0.732880 CCGTCACACGAAGCACTAGG 60.733 60.000 0.00 0.00 46.05 3.02
30 31 0.240145 CGTCACACGAAGCACTAGGA 59.760 55.000 0.00 0.00 46.05 2.94
31 32 1.729472 CGTCACACGAAGCACTAGGAG 60.729 57.143 0.00 0.00 46.05 3.69
32 33 0.888619 TCACACGAAGCACTAGGAGG 59.111 55.000 0.00 0.00 0.00 4.30
33 34 0.603569 CACACGAAGCACTAGGAGGT 59.396 55.000 0.00 0.00 0.00 3.85
34 35 0.889306 ACACGAAGCACTAGGAGGTC 59.111 55.000 0.00 0.00 0.00 3.85
35 36 0.888619 CACGAAGCACTAGGAGGTCA 59.111 55.000 0.00 0.00 0.00 4.02
36 37 1.135257 CACGAAGCACTAGGAGGTCAG 60.135 57.143 0.00 0.00 0.00 3.51
37 38 1.271982 ACGAAGCACTAGGAGGTCAGA 60.272 52.381 0.00 0.00 0.00 3.27
38 39 2.028130 CGAAGCACTAGGAGGTCAGAT 58.972 52.381 0.00 0.00 0.00 2.90
39 40 2.034053 CGAAGCACTAGGAGGTCAGATC 59.966 54.545 0.00 0.00 0.00 2.75
40 41 2.080654 AGCACTAGGAGGTCAGATCC 57.919 55.000 0.00 0.00 37.07 3.36
41 42 1.044611 GCACTAGGAGGTCAGATCCC 58.955 60.000 0.00 0.00 37.57 3.85
42 43 1.710816 CACTAGGAGGTCAGATCCCC 58.289 60.000 0.00 0.00 37.57 4.81
43 44 1.219213 CACTAGGAGGTCAGATCCCCT 59.781 57.143 0.00 0.00 37.57 4.79
44 45 1.219213 ACTAGGAGGTCAGATCCCCTG 59.781 57.143 0.00 0.00 44.27 4.45
51 52 3.515059 TCAGATCCCCTGACGTAGG 57.485 57.895 0.00 0.00 46.38 3.18
52 53 0.629596 TCAGATCCCCTGACGTAGGT 59.370 55.000 9.33 0.00 46.38 3.08
53 54 0.747255 CAGATCCCCTGACGTAGGTG 59.253 60.000 0.00 0.40 45.80 4.00
54 55 0.397254 AGATCCCCTGACGTAGGTGG 60.397 60.000 0.00 9.67 45.80 4.61
55 56 0.396695 GATCCCCTGACGTAGGTGGA 60.397 60.000 16.12 16.12 45.80 4.02
56 57 0.686769 ATCCCCTGACGTAGGTGGAC 60.687 60.000 16.12 0.00 44.00 4.02
57 58 1.608336 CCCCTGACGTAGGTGGACA 60.608 63.158 0.00 0.00 45.80 4.02
58 59 1.590147 CCCTGACGTAGGTGGACAC 59.410 63.158 0.00 0.00 45.80 3.67
59 60 1.211969 CCTGACGTAGGTGGACACG 59.788 63.158 0.00 0.00 42.00 4.49
65 66 2.420628 CGTAGGTGGACACGTTTACA 57.579 50.000 2.81 0.00 33.56 2.41
66 67 2.322161 CGTAGGTGGACACGTTTACAG 58.678 52.381 2.81 0.00 33.56 2.74
67 68 2.064014 GTAGGTGGACACGTTTACAGC 58.936 52.381 8.06 8.06 0.00 4.40
68 69 0.250166 AGGTGGACACGTTTACAGCC 60.250 55.000 12.35 5.15 32.14 4.85
69 70 1.232621 GGTGGACACGTTTACAGCCC 61.233 60.000 4.75 0.00 0.00 5.19
70 71 1.301087 TGGACACGTTTACAGCCCG 60.301 57.895 0.00 0.00 0.00 6.13
71 72 1.301165 GGACACGTTTACAGCCCGT 60.301 57.895 0.00 0.00 34.71 5.28
73 74 2.554272 CACGTTTACAGCCCGTGC 59.446 61.111 0.00 0.00 44.34 5.34
74 75 2.667199 ACGTTTACAGCCCGTGCC 60.667 61.111 0.00 0.00 38.69 5.01
75 76 3.784412 CGTTTACAGCCCGTGCCG 61.784 66.667 0.00 0.00 38.69 5.69
76 77 2.667199 GTTTACAGCCCGTGCCGT 60.667 61.111 0.00 0.00 38.69 5.68
77 78 2.666862 TTTACAGCCCGTGCCGTG 60.667 61.111 0.00 0.00 38.69 4.94
78 79 3.463728 TTTACAGCCCGTGCCGTGT 62.464 57.895 0.00 0.00 38.69 4.49
79 80 4.673298 TACAGCCCGTGCCGTGTG 62.673 66.667 0.00 0.00 38.69 3.82
95 96 2.359354 TGACGGCCCGGTCAAATG 60.359 61.111 8.57 0.00 43.55 2.32
96 97 2.046700 GACGGCCCGGTCAAATGA 60.047 61.111 8.57 0.00 36.91 2.57
97 98 1.673009 GACGGCCCGGTCAAATGAA 60.673 57.895 8.57 0.00 36.91 2.57
98 99 1.228306 ACGGCCCGGTCAAATGAAA 60.228 52.632 8.57 0.00 0.00 2.69
99 100 1.241315 ACGGCCCGGTCAAATGAAAG 61.241 55.000 8.57 0.00 0.00 2.62
100 101 1.215382 GGCCCGGTCAAATGAAAGC 59.785 57.895 0.00 0.00 0.00 3.51
101 102 1.250840 GGCCCGGTCAAATGAAAGCT 61.251 55.000 0.00 0.00 0.00 3.74
102 103 0.109132 GCCCGGTCAAATGAAAGCTG 60.109 55.000 0.00 0.00 0.00 4.24
103 104 0.109132 CCCGGTCAAATGAAAGCTGC 60.109 55.000 0.00 0.00 0.00 5.25
104 105 0.883833 CCGGTCAAATGAAAGCTGCT 59.116 50.000 0.00 0.00 0.00 4.24
105 106 1.270550 CCGGTCAAATGAAAGCTGCTT 59.729 47.619 9.53 9.53 0.00 3.91
106 107 2.322161 CGGTCAAATGAAAGCTGCTTG 58.678 47.619 16.73 2.81 0.00 4.01
107 108 2.287788 CGGTCAAATGAAAGCTGCTTGT 60.288 45.455 16.73 6.23 0.00 3.16
108 109 3.311966 GGTCAAATGAAAGCTGCTTGTC 58.688 45.455 16.73 14.93 0.00 3.18
109 110 3.005155 GGTCAAATGAAAGCTGCTTGTCT 59.995 43.478 16.73 0.00 0.00 3.41
110 111 4.225208 GTCAAATGAAAGCTGCTTGTCTC 58.775 43.478 16.73 10.48 0.00 3.36
111 112 3.254166 TCAAATGAAAGCTGCTTGTCTCC 59.746 43.478 16.73 4.15 0.00 3.71
112 113 2.875094 ATGAAAGCTGCTTGTCTCCT 57.125 45.000 16.73 0.00 0.00 3.69
113 114 2.645838 TGAAAGCTGCTTGTCTCCTT 57.354 45.000 16.73 0.00 0.00 3.36
114 115 2.224606 TGAAAGCTGCTTGTCTCCTTG 58.775 47.619 16.73 0.00 0.00 3.61
115 116 0.957362 AAAGCTGCTTGTCTCCTTGC 59.043 50.000 16.73 0.00 0.00 4.01
116 117 1.233285 AAGCTGCTTGTCTCCTTGCG 61.233 55.000 15.16 0.00 0.00 4.85
117 118 2.866028 CTGCTTGTCTCCTTGCGC 59.134 61.111 0.00 0.00 0.00 6.09
118 119 1.962822 CTGCTTGTCTCCTTGCGCA 60.963 57.895 5.66 5.66 0.00 6.09
119 120 1.302752 TGCTTGTCTCCTTGCGCAT 60.303 52.632 12.75 0.00 0.00 4.73
120 121 0.036483 TGCTTGTCTCCTTGCGCATA 60.036 50.000 12.75 0.83 0.00 3.14
121 122 0.375106 GCTTGTCTCCTTGCGCATAC 59.625 55.000 12.75 5.66 0.00 2.39
122 123 1.725641 CTTGTCTCCTTGCGCATACA 58.274 50.000 12.75 8.43 0.00 2.29
123 124 1.662629 CTTGTCTCCTTGCGCATACAG 59.337 52.381 12.75 5.60 0.00 2.74
124 125 0.108186 TGTCTCCTTGCGCATACAGG 60.108 55.000 18.71 18.71 0.00 4.00
125 126 0.175760 GTCTCCTTGCGCATACAGGA 59.824 55.000 24.18 24.18 0.00 3.86
126 127 0.901827 TCTCCTTGCGCATACAGGAA 59.098 50.000 25.31 15.63 0.00 3.36
127 128 1.277842 TCTCCTTGCGCATACAGGAAA 59.722 47.619 25.31 13.73 0.00 3.13
128 129 1.398390 CTCCTTGCGCATACAGGAAAC 59.602 52.381 25.31 0.00 0.00 2.78
129 130 1.164411 CCTTGCGCATACAGGAAACA 58.836 50.000 19.84 0.00 0.00 2.83
130 131 1.135689 CCTTGCGCATACAGGAAACAC 60.136 52.381 19.84 0.00 0.00 3.32
131 132 0.515127 TTGCGCATACAGGAAACACG 59.485 50.000 12.75 0.00 0.00 4.49
132 133 0.319986 TGCGCATACAGGAAACACGA 60.320 50.000 5.66 0.00 0.00 4.35
133 134 0.094730 GCGCATACAGGAAACACGAC 59.905 55.000 0.30 0.00 0.00 4.34
134 135 0.719465 CGCATACAGGAAACACGACC 59.281 55.000 0.00 0.00 0.00 4.79
135 136 1.803334 GCATACAGGAAACACGACCA 58.197 50.000 0.00 0.00 0.00 4.02
136 137 1.463444 GCATACAGGAAACACGACCAC 59.537 52.381 0.00 0.00 0.00 4.16
137 138 2.870435 GCATACAGGAAACACGACCACT 60.870 50.000 0.00 0.00 0.00 4.00
138 139 2.806608 TACAGGAAACACGACCACTC 57.193 50.000 0.00 0.00 0.00 3.51
139 140 1.120530 ACAGGAAACACGACCACTCT 58.879 50.000 0.00 0.00 0.00 3.24
140 141 1.068741 ACAGGAAACACGACCACTCTC 59.931 52.381 0.00 0.00 0.00 3.20
141 142 0.680061 AGGAAACACGACCACTCTCC 59.320 55.000 0.00 0.00 0.00 3.71
142 143 0.680061 GGAAACACGACCACTCTCCT 59.320 55.000 0.00 0.00 0.00 3.69
143 144 1.070289 GGAAACACGACCACTCTCCTT 59.930 52.381 0.00 0.00 0.00 3.36
144 145 2.484947 GGAAACACGACCACTCTCCTTT 60.485 50.000 0.00 0.00 0.00 3.11
145 146 2.240493 AACACGACCACTCTCCTTTG 57.760 50.000 0.00 0.00 0.00 2.77
146 147 1.410004 ACACGACCACTCTCCTTTGA 58.590 50.000 0.00 0.00 0.00 2.69
147 148 1.760613 ACACGACCACTCTCCTTTGAA 59.239 47.619 0.00 0.00 0.00 2.69
148 149 2.169769 ACACGACCACTCTCCTTTGAAA 59.830 45.455 0.00 0.00 0.00 2.69
149 150 3.181454 ACACGACCACTCTCCTTTGAAAT 60.181 43.478 0.00 0.00 0.00 2.17
150 151 3.815401 CACGACCACTCTCCTTTGAAATT 59.185 43.478 0.00 0.00 0.00 1.82
151 152 4.275936 CACGACCACTCTCCTTTGAAATTT 59.724 41.667 0.00 0.00 0.00 1.82
152 153 4.515567 ACGACCACTCTCCTTTGAAATTTC 59.484 41.667 11.41 11.41 0.00 2.17
153 154 4.515191 CGACCACTCTCCTTTGAAATTTCA 59.485 41.667 16.91 16.91 34.92 2.69
154 155 5.560953 CGACCACTCTCCTTTGAAATTTCAC 60.561 44.000 20.35 3.76 36.83 3.18
155 156 5.449553 ACCACTCTCCTTTGAAATTTCACT 58.550 37.500 20.35 0.00 36.83 3.41
156 157 6.601332 ACCACTCTCCTTTGAAATTTCACTA 58.399 36.000 20.35 10.61 36.83 2.74
157 158 6.486993 ACCACTCTCCTTTGAAATTTCACTAC 59.513 38.462 20.35 0.00 36.83 2.73
158 159 6.347725 CCACTCTCCTTTGAAATTTCACTACG 60.348 42.308 20.35 8.56 36.83 3.51
159 160 5.179555 ACTCTCCTTTGAAATTTCACTACGC 59.820 40.000 20.35 0.00 36.83 4.42
160 161 5.305585 TCTCCTTTGAAATTTCACTACGCT 58.694 37.500 20.35 0.00 36.83 5.07
161 162 6.460781 TCTCCTTTGAAATTTCACTACGCTA 58.539 36.000 20.35 1.32 36.83 4.26
162 163 6.367969 TCTCCTTTGAAATTTCACTACGCTAC 59.632 38.462 20.35 0.00 36.83 3.58
163 164 5.119588 TCCTTTGAAATTTCACTACGCTACG 59.880 40.000 20.35 2.27 36.83 3.51
164 165 4.914312 TTGAAATTTCACTACGCTACGG 57.086 40.909 20.35 0.00 36.83 4.02
165 166 3.916761 TGAAATTTCACTACGCTACGGT 58.083 40.909 16.91 0.00 31.01 4.83
166 167 3.922240 TGAAATTTCACTACGCTACGGTC 59.078 43.478 16.91 0.00 31.01 4.79
167 168 2.573941 ATTTCACTACGCTACGGTCC 57.426 50.000 0.00 0.00 0.00 4.46
168 169 1.246649 TTTCACTACGCTACGGTCCA 58.753 50.000 0.00 0.00 0.00 4.02
169 170 0.523072 TTCACTACGCTACGGTCCAC 59.477 55.000 0.00 0.00 0.00 4.02
170 171 0.606130 TCACTACGCTACGGTCCACA 60.606 55.000 0.00 0.00 0.00 4.17
171 172 0.455633 CACTACGCTACGGTCCACAC 60.456 60.000 0.00 0.00 0.00 3.82
172 173 1.138247 CTACGCTACGGTCCACACC 59.862 63.158 0.00 0.00 39.69 4.16
173 174 1.588824 CTACGCTACGGTCCACACCA 61.589 60.000 0.00 0.00 44.02 4.17
174 175 1.177895 TACGCTACGGTCCACACCAA 61.178 55.000 0.00 0.00 44.02 3.67
175 176 2.025418 CGCTACGGTCCACACCAAC 61.025 63.158 0.00 0.00 44.02 3.77
176 177 1.070105 GCTACGGTCCACACCAACA 59.930 57.895 0.00 0.00 44.02 3.33
177 178 0.949105 GCTACGGTCCACACCAACAG 60.949 60.000 0.00 0.00 44.02 3.16
178 179 0.949105 CTACGGTCCACACCAACAGC 60.949 60.000 0.00 0.00 44.02 4.40
179 180 1.404479 TACGGTCCACACCAACAGCT 61.404 55.000 0.00 0.00 44.02 4.24
180 181 1.961277 CGGTCCACACCAACAGCTC 60.961 63.158 0.00 0.00 44.02 4.09
181 182 1.961277 GGTCCACACCAACAGCTCG 60.961 63.158 0.00 0.00 43.17 5.03
182 183 2.280797 TCCACACCAACAGCTCGC 60.281 61.111 0.00 0.00 0.00 5.03
183 184 2.281070 CCACACCAACAGCTCGCT 60.281 61.111 0.00 0.00 0.00 4.93
184 185 2.320587 CCACACCAACAGCTCGCTC 61.321 63.158 0.00 0.00 0.00 5.03
185 186 1.301244 CACACCAACAGCTCGCTCT 60.301 57.895 0.00 0.00 0.00 4.09
186 187 1.005630 ACACCAACAGCTCGCTCTC 60.006 57.895 0.00 0.00 0.00 3.20
187 188 1.291588 CACCAACAGCTCGCTCTCT 59.708 57.895 0.00 0.00 0.00 3.10
188 189 0.320247 CACCAACAGCTCGCTCTCTT 60.320 55.000 0.00 0.00 0.00 2.85
189 190 0.394565 ACCAACAGCTCGCTCTCTTT 59.605 50.000 0.00 0.00 0.00 2.52
190 191 1.074752 CCAACAGCTCGCTCTCTTTC 58.925 55.000 0.00 0.00 0.00 2.62
191 192 1.606480 CCAACAGCTCGCTCTCTTTCA 60.606 52.381 0.00 0.00 0.00 2.69
192 193 2.344950 CAACAGCTCGCTCTCTTTCAT 58.655 47.619 0.00 0.00 0.00 2.57
193 194 2.007360 ACAGCTCGCTCTCTTTCATG 57.993 50.000 0.00 0.00 0.00 3.07
194 195 0.651551 CAGCTCGCTCTCTTTCATGC 59.348 55.000 0.00 0.00 0.00 4.06
195 196 0.248565 AGCTCGCTCTCTTTCATGCA 59.751 50.000 0.00 0.00 0.00 3.96
196 197 0.651551 GCTCGCTCTCTTTCATGCAG 59.348 55.000 0.00 0.00 0.00 4.41
197 198 0.651551 CTCGCTCTCTTTCATGCAGC 59.348 55.000 0.00 0.00 0.00 5.25
198 199 0.037046 TCGCTCTCTTTCATGCAGCA 60.037 50.000 0.00 0.00 0.00 4.41
199 200 0.374063 CGCTCTCTTTCATGCAGCAG 59.626 55.000 0.00 0.00 0.00 4.24
200 201 0.733729 GCTCTCTTTCATGCAGCAGG 59.266 55.000 0.00 0.00 0.00 4.85
201 202 1.949547 GCTCTCTTTCATGCAGCAGGT 60.950 52.381 6.99 0.00 0.00 4.00
202 203 2.008329 CTCTCTTTCATGCAGCAGGTC 58.992 52.381 6.99 0.00 0.00 3.85
203 204 1.093159 CTCTTTCATGCAGCAGGTCC 58.907 55.000 6.99 0.00 0.00 4.46
204 205 0.694771 TCTTTCATGCAGCAGGTCCT 59.305 50.000 6.99 0.00 0.00 3.85
205 206 0.809385 CTTTCATGCAGCAGGTCCTG 59.191 55.000 15.15 15.15 35.93 3.86
238 239 4.799564 TTTTTGCCACTTCAAGACTTGT 57.200 36.364 14.75 0.00 0.00 3.16
239 240 5.906113 TTTTTGCCACTTCAAGACTTGTA 57.094 34.783 14.75 4.74 0.00 2.41
240 241 5.906113 TTTTGCCACTTCAAGACTTGTAA 57.094 34.783 14.75 7.34 0.00 2.41
241 242 5.906113 TTTGCCACTTCAAGACTTGTAAA 57.094 34.783 14.75 2.44 0.00 2.01
242 243 5.906113 TTGCCACTTCAAGACTTGTAAAA 57.094 34.783 14.75 1.74 0.00 1.52
243 244 6.463995 TTGCCACTTCAAGACTTGTAAAAT 57.536 33.333 14.75 0.00 0.00 1.82
244 245 6.463995 TGCCACTTCAAGACTTGTAAAATT 57.536 33.333 14.75 0.00 0.00 1.82
245 246 6.272318 TGCCACTTCAAGACTTGTAAAATTG 58.728 36.000 14.75 6.75 0.00 2.32
246 247 5.175673 GCCACTTCAAGACTTGTAAAATTGC 59.824 40.000 14.75 7.01 0.00 3.56
247 248 6.272318 CCACTTCAAGACTTGTAAAATTGCA 58.728 36.000 14.75 0.00 0.00 4.08
248 249 6.925165 CCACTTCAAGACTTGTAAAATTGCAT 59.075 34.615 14.75 0.00 0.00 3.96
249 250 8.081633 CCACTTCAAGACTTGTAAAATTGCATA 58.918 33.333 14.75 0.00 0.00 3.14
250 251 9.121517 CACTTCAAGACTTGTAAAATTGCATAG 57.878 33.333 14.75 0.00 0.00 2.23
251 252 9.066892 ACTTCAAGACTTGTAAAATTGCATAGA 57.933 29.630 14.75 0.00 0.00 1.98
252 253 9.897744 CTTCAAGACTTGTAAAATTGCATAGAA 57.102 29.630 14.75 0.00 0.00 2.10
282 283 9.574516 AATCCATTTTACTACTCTGAACAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
283 284 8.974060 TCCATTTTACTACTCTGAACAAAGTT 57.026 30.769 0.00 0.00 0.00 2.66
284 285 8.836413 TCCATTTTACTACTCTGAACAAAGTTG 58.164 33.333 0.00 0.00 0.00 3.16
285 286 8.836413 CCATTTTACTACTCTGAACAAAGTTGA 58.164 33.333 0.00 0.00 0.00 3.18
288 289 7.962964 TTACTACTCTGAACAAAGTTGATGG 57.037 36.000 0.00 0.00 0.00 3.51
289 290 5.930135 ACTACTCTGAACAAAGTTGATGGT 58.070 37.500 0.00 0.00 0.00 3.55
290 291 6.357367 ACTACTCTGAACAAAGTTGATGGTT 58.643 36.000 0.00 0.00 0.00 3.67
291 292 5.757850 ACTCTGAACAAAGTTGATGGTTC 57.242 39.130 0.00 0.00 39.93 3.62
292 293 5.192927 ACTCTGAACAAAGTTGATGGTTCA 58.807 37.500 0.00 0.00 45.12 3.18
293 294 5.066505 ACTCTGAACAAAGTTGATGGTTCAC 59.933 40.000 0.00 0.00 43.19 3.18
294 295 4.946772 TCTGAACAAAGTTGATGGTTCACA 59.053 37.500 0.00 0.00 43.19 3.58
295 296 5.593909 TCTGAACAAAGTTGATGGTTCACAT 59.406 36.000 0.00 0.00 43.19 3.21
303 304 3.985410 ATGGTTCACATCACCCCTG 57.015 52.632 0.00 0.00 33.53 4.45
304 305 1.371467 ATGGTTCACATCACCCCTGA 58.629 50.000 0.00 0.00 33.53 3.86
305 306 1.371467 TGGTTCACATCACCCCTGAT 58.629 50.000 0.00 0.00 37.65 2.90
306 307 1.281867 TGGTTCACATCACCCCTGATC 59.718 52.381 0.00 0.00 34.65 2.92
307 308 1.561542 GGTTCACATCACCCCTGATCT 59.438 52.381 0.00 0.00 34.65 2.75
308 309 2.771943 GGTTCACATCACCCCTGATCTA 59.228 50.000 0.00 0.00 34.65 1.98
309 310 3.392616 GGTTCACATCACCCCTGATCTAT 59.607 47.826 0.00 0.00 34.65 1.98
310 311 4.141390 GGTTCACATCACCCCTGATCTATT 60.141 45.833 0.00 0.00 34.65 1.73
311 312 5.440610 GTTCACATCACCCCTGATCTATTT 58.559 41.667 0.00 0.00 34.65 1.40
312 313 5.715439 TCACATCACCCCTGATCTATTTT 57.285 39.130 0.00 0.00 34.65 1.82
313 314 5.684704 TCACATCACCCCTGATCTATTTTC 58.315 41.667 0.00 0.00 34.65 2.29
314 315 5.429762 TCACATCACCCCTGATCTATTTTCT 59.570 40.000 0.00 0.00 34.65 2.52
315 316 5.530171 CACATCACCCCTGATCTATTTTCTG 59.470 44.000 0.00 0.00 34.65 3.02
316 317 4.156455 TCACCCCTGATCTATTTTCTGC 57.844 45.455 0.00 0.00 0.00 4.26
317 318 3.117888 TCACCCCTGATCTATTTTCTGCC 60.118 47.826 0.00 0.00 0.00 4.85
318 319 2.175715 ACCCCTGATCTATTTTCTGCCC 59.824 50.000 0.00 0.00 0.00 5.36
319 320 2.489802 CCCCTGATCTATTTTCTGCCCC 60.490 54.545 0.00 0.00 0.00 5.80
320 321 2.444766 CCCTGATCTATTTTCTGCCCCT 59.555 50.000 0.00 0.00 0.00 4.79
321 322 3.117360 CCCTGATCTATTTTCTGCCCCTT 60.117 47.826 0.00 0.00 0.00 3.95
322 323 4.540715 CCTGATCTATTTTCTGCCCCTTT 58.459 43.478 0.00 0.00 0.00 3.11
323 324 4.582240 CCTGATCTATTTTCTGCCCCTTTC 59.418 45.833 0.00 0.00 0.00 2.62
324 325 5.191727 TGATCTATTTTCTGCCCCTTTCA 57.808 39.130 0.00 0.00 0.00 2.69
325 326 4.949856 TGATCTATTTTCTGCCCCTTTCAC 59.050 41.667 0.00 0.00 0.00 3.18
326 327 3.697166 TCTATTTTCTGCCCCTTTCACC 58.303 45.455 0.00 0.00 0.00 4.02
327 328 1.644509 ATTTTCTGCCCCTTTCACCC 58.355 50.000 0.00 0.00 0.00 4.61
328 329 0.471022 TTTTCTGCCCCTTTCACCCC 60.471 55.000 0.00 0.00 0.00 4.95
329 330 1.368268 TTTCTGCCCCTTTCACCCCT 61.368 55.000 0.00 0.00 0.00 4.79
330 331 0.476808 TTCTGCCCCTTTCACCCCTA 60.477 55.000 0.00 0.00 0.00 3.53
331 332 0.253630 TCTGCCCCTTTCACCCCTAT 60.254 55.000 0.00 0.00 0.00 2.57
332 333 0.183731 CTGCCCCTTTCACCCCTATC 59.816 60.000 0.00 0.00 0.00 2.08
333 334 0.551377 TGCCCCTTTCACCCCTATCA 60.551 55.000 0.00 0.00 0.00 2.15
334 335 0.629058 GCCCCTTTCACCCCTATCAA 59.371 55.000 0.00 0.00 0.00 2.57
335 336 1.006639 GCCCCTTTCACCCCTATCAAA 59.993 52.381 0.00 0.00 0.00 2.69
336 337 2.735151 CCCCTTTCACCCCTATCAAAC 58.265 52.381 0.00 0.00 0.00 2.93
337 338 2.623239 CCCCTTTCACCCCTATCAAACC 60.623 54.545 0.00 0.00 0.00 3.27
338 339 2.623239 CCCTTTCACCCCTATCAAACCC 60.623 54.545 0.00 0.00 0.00 4.11
339 340 2.042433 CCTTTCACCCCTATCAAACCCA 59.958 50.000 0.00 0.00 0.00 4.51
340 341 3.309848 CCTTTCACCCCTATCAAACCCAT 60.310 47.826 0.00 0.00 0.00 4.00
341 342 4.079443 CCTTTCACCCCTATCAAACCCATA 60.079 45.833 0.00 0.00 0.00 2.74
342 343 4.513406 TTCACCCCTATCAAACCCATAC 57.487 45.455 0.00 0.00 0.00 2.39
343 344 2.781174 TCACCCCTATCAAACCCATACC 59.219 50.000 0.00 0.00 0.00 2.73
344 345 2.512056 CACCCCTATCAAACCCATACCA 59.488 50.000 0.00 0.00 0.00 3.25
345 346 2.783510 ACCCCTATCAAACCCATACCAG 59.216 50.000 0.00 0.00 0.00 4.00
346 347 3.053077 CCCCTATCAAACCCATACCAGA 58.947 50.000 0.00 0.00 0.00 3.86
347 348 3.181443 CCCCTATCAAACCCATACCAGAC 60.181 52.174 0.00 0.00 0.00 3.51
348 349 3.458118 CCCTATCAAACCCATACCAGACA 59.542 47.826 0.00 0.00 0.00 3.41
349 350 4.080015 CCCTATCAAACCCATACCAGACAA 60.080 45.833 0.00 0.00 0.00 3.18
350 351 5.505780 CCTATCAAACCCATACCAGACAAA 58.494 41.667 0.00 0.00 0.00 2.83
351 352 5.949354 CCTATCAAACCCATACCAGACAAAA 59.051 40.000 0.00 0.00 0.00 2.44
352 353 6.435904 CCTATCAAACCCATACCAGACAAAAA 59.564 38.462 0.00 0.00 0.00 1.94
376 377 2.185004 ACCCTTGATGGTTTGTCTCG 57.815 50.000 0.00 0.00 33.91 4.04
377 378 1.697432 ACCCTTGATGGTTTGTCTCGA 59.303 47.619 0.00 0.00 33.91 4.04
378 379 2.076863 CCCTTGATGGTTTGTCTCGAC 58.923 52.381 0.00 0.00 0.00 4.20
379 380 2.076863 CCTTGATGGTTTGTCTCGACC 58.923 52.381 0.00 0.00 36.45 4.79
380 381 2.289694 CCTTGATGGTTTGTCTCGACCT 60.290 50.000 0.00 0.00 36.86 3.85
381 382 2.455674 TGATGGTTTGTCTCGACCTG 57.544 50.000 0.00 0.00 36.86 4.00
382 383 1.001974 TGATGGTTTGTCTCGACCTGG 59.998 52.381 0.00 0.00 36.86 4.45
383 384 1.275291 GATGGTTTGTCTCGACCTGGA 59.725 52.381 0.00 0.00 36.86 3.86
384 385 0.679505 TGGTTTGTCTCGACCTGGAG 59.320 55.000 0.00 0.00 36.86 3.86
385 386 0.670854 GGTTTGTCTCGACCTGGAGC 60.671 60.000 0.00 0.00 33.98 4.70
386 387 0.318762 GTTTGTCTCGACCTGGAGCT 59.681 55.000 0.00 0.00 33.98 4.09
387 388 0.318441 TTTGTCTCGACCTGGAGCTG 59.682 55.000 0.00 0.00 33.98 4.24
388 389 0.539669 TTGTCTCGACCTGGAGCTGA 60.540 55.000 0.00 0.00 33.98 4.26
389 390 1.244697 TGTCTCGACCTGGAGCTGAC 61.245 60.000 0.00 4.36 33.98 3.51
390 391 1.074951 TCTCGACCTGGAGCTGACA 59.925 57.895 0.00 0.00 33.98 3.58
391 392 0.323816 TCTCGACCTGGAGCTGACAT 60.324 55.000 0.00 0.00 33.98 3.06
392 393 0.179116 CTCGACCTGGAGCTGACATG 60.179 60.000 0.00 0.00 0.00 3.21
393 394 1.153489 CGACCTGGAGCTGACATGG 60.153 63.158 0.00 0.00 0.00 3.66
394 395 1.451028 GACCTGGAGCTGACATGGC 60.451 63.158 0.00 0.00 0.00 4.40
395 396 2.513204 CCTGGAGCTGACATGGCG 60.513 66.667 0.00 0.00 34.52 5.69
396 397 2.513204 CTGGAGCTGACATGGCGG 60.513 66.667 1.77 1.77 34.52 6.13
397 398 3.320879 CTGGAGCTGACATGGCGGT 62.321 63.158 9.70 1.59 34.52 5.68
398 399 2.821366 GGAGCTGACATGGCGGTG 60.821 66.667 9.70 0.00 34.52 4.94
399 400 2.821366 GAGCTGACATGGCGGTGG 60.821 66.667 9.70 0.00 34.52 4.61
400 401 3.315142 GAGCTGACATGGCGGTGGA 62.315 63.158 9.70 0.00 34.52 4.02
401 402 3.127533 GCTGACATGGCGGTGGAC 61.128 66.667 9.70 0.00 0.00 4.02
402 403 2.347114 CTGACATGGCGGTGGACA 59.653 61.111 0.00 0.00 34.03 4.02
403 404 1.302431 CTGACATGGCGGTGGACAA 60.302 57.895 0.00 0.00 32.52 3.18
404 405 1.300971 CTGACATGGCGGTGGACAAG 61.301 60.000 0.00 0.00 32.52 3.16
405 406 2.034066 ACATGGCGGTGGACAAGG 59.966 61.111 0.00 0.00 32.52 3.61
406 407 2.751436 CATGGCGGTGGACAAGGG 60.751 66.667 0.00 0.00 32.52 3.95
407 408 3.256960 ATGGCGGTGGACAAGGGT 61.257 61.111 0.00 0.00 32.52 4.34
408 409 3.567579 ATGGCGGTGGACAAGGGTG 62.568 63.158 0.00 0.00 32.52 4.61
411 412 3.953775 CGGTGGACAAGGGTGGCT 61.954 66.667 0.00 0.00 31.06 4.75
412 413 2.520968 GGTGGACAAGGGTGGCTT 59.479 61.111 0.00 0.00 31.06 4.35
413 414 1.152546 GGTGGACAAGGGTGGCTTT 60.153 57.895 0.00 0.00 31.06 3.51
414 415 0.759060 GGTGGACAAGGGTGGCTTTT 60.759 55.000 0.00 0.00 31.06 2.27
415 416 1.119684 GTGGACAAGGGTGGCTTTTT 58.880 50.000 0.00 0.00 31.06 1.94
416 417 2.312390 GTGGACAAGGGTGGCTTTTTA 58.688 47.619 0.00 0.00 31.06 1.52
417 418 2.035449 GTGGACAAGGGTGGCTTTTTAC 59.965 50.000 0.00 0.00 31.06 2.01
418 419 1.616865 GGACAAGGGTGGCTTTTTACC 59.383 52.381 0.00 0.00 36.21 2.85
419 420 1.268625 GACAAGGGTGGCTTTTTACCG 59.731 52.381 0.00 0.00 37.85 4.02
420 421 0.601057 CAAGGGTGGCTTTTTACCGG 59.399 55.000 0.00 0.00 37.85 5.28
421 422 1.183030 AAGGGTGGCTTTTTACCGGC 61.183 55.000 0.00 0.00 37.85 6.13
422 423 1.605451 GGGTGGCTTTTTACCGGCT 60.605 57.895 0.00 0.00 37.85 5.52
1696 1704 1.443802 GCTACCAGCTGAAGGTGAAC 58.556 55.000 17.39 0.00 45.66 3.18
1727 1735 4.696877 TCACAAGCACATATTCAAGACCAG 59.303 41.667 0.00 0.00 0.00 4.00
1848 1914 2.276732 AATCCAGTGGACTTGGTGTG 57.723 50.000 15.86 0.00 32.98 3.82
1849 1915 1.140312 ATCCAGTGGACTTGGTGTGT 58.860 50.000 15.86 0.00 32.98 3.72
1850 1916 0.180171 TCCAGTGGACTTGGTGTGTG 59.820 55.000 8.12 0.00 0.00 3.82
1851 1917 1.447317 CCAGTGGACTTGGTGTGTGC 61.447 60.000 1.68 0.00 0.00 4.57
1852 1918 1.152963 AGTGGACTTGGTGTGTGCC 60.153 57.895 0.00 0.00 0.00 5.01
1853 1919 1.453015 GTGGACTTGGTGTGTGCCA 60.453 57.895 0.00 0.00 36.62 4.92
1854 1920 1.034838 GTGGACTTGGTGTGTGCCAA 61.035 55.000 0.00 0.00 45.37 4.52
1855 1921 0.323816 TGGACTTGGTGTGTGCCAAA 60.324 50.000 0.00 0.00 46.59 3.28
1856 1922 1.039856 GGACTTGGTGTGTGCCAAAT 58.960 50.000 0.00 0.00 46.59 2.32
1857 1923 1.269726 GGACTTGGTGTGTGCCAAATG 60.270 52.381 0.00 0.00 46.59 2.32
1858 1924 1.408702 GACTTGGTGTGTGCCAAATGT 59.591 47.619 0.00 0.00 46.59 2.71
2256 2433 2.167487 CCTAGAAGTTGCTCCTGGTCTC 59.833 54.545 0.00 0.00 0.00 3.36
2269 2446 4.922206 TCCTGGTCTCTTGCACATTTTAT 58.078 39.130 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.538841 CTTCGTGTGACGGAGCAC 58.461 61.111 0.00 0.00 40.72 4.40
11 12 0.240145 TCCTAGTGCTTCGTGTGACG 59.760 55.000 0.00 0.00 44.19 4.35
12 13 1.402984 CCTCCTAGTGCTTCGTGTGAC 60.403 57.143 0.00 0.00 0.00 3.67
13 14 0.888619 CCTCCTAGTGCTTCGTGTGA 59.111 55.000 0.00 0.00 0.00 3.58
14 15 0.603569 ACCTCCTAGTGCTTCGTGTG 59.396 55.000 0.00 0.00 0.00 3.82
15 16 0.889306 GACCTCCTAGTGCTTCGTGT 59.111 55.000 0.00 0.00 0.00 4.49
17 18 1.178276 CTGACCTCCTAGTGCTTCGT 58.822 55.000 0.00 0.00 0.00 3.85
19 20 2.364002 GGATCTGACCTCCTAGTGCTTC 59.636 54.545 0.00 0.00 0.00 3.86
20 21 2.393646 GGATCTGACCTCCTAGTGCTT 58.606 52.381 0.00 0.00 0.00 3.91
21 22 1.412361 GGGATCTGACCTCCTAGTGCT 60.412 57.143 0.00 0.00 33.05 4.40
22 23 1.044611 GGGATCTGACCTCCTAGTGC 58.955 60.000 0.00 0.00 33.05 4.40
24 25 1.219213 CAGGGGATCTGACCTCCTAGT 59.781 57.143 0.00 0.00 46.18 2.57
25 26 1.501170 TCAGGGGATCTGACCTCCTAG 59.499 57.143 0.00 0.00 46.71 3.02
26 27 1.620515 TCAGGGGATCTGACCTCCTA 58.379 55.000 0.00 0.00 46.71 2.94
27 28 2.425873 TCAGGGGATCTGACCTCCT 58.574 57.895 0.00 0.00 46.71 3.69
42 43 4.861883 CGTGTCCACCTACGTCAG 57.138 61.111 0.00 0.00 35.70 3.51
46 47 2.322161 CTGTAAACGTGTCCACCTACG 58.678 52.381 0.00 0.00 45.19 3.51
47 48 2.064014 GCTGTAAACGTGTCCACCTAC 58.936 52.381 0.00 0.00 0.00 3.18
48 49 1.001181 GGCTGTAAACGTGTCCACCTA 59.999 52.381 0.00 0.00 0.00 3.08
49 50 0.250166 GGCTGTAAACGTGTCCACCT 60.250 55.000 0.00 0.00 0.00 4.00
50 51 1.232621 GGGCTGTAAACGTGTCCACC 61.233 60.000 0.00 0.00 0.00 4.61
51 52 1.562575 CGGGCTGTAAACGTGTCCAC 61.563 60.000 0.00 0.00 0.00 4.02
52 53 1.301087 CGGGCTGTAAACGTGTCCA 60.301 57.895 0.00 0.00 0.00 4.02
53 54 1.301165 ACGGGCTGTAAACGTGTCC 60.301 57.895 0.00 0.00 39.64 4.02
54 55 4.348857 ACGGGCTGTAAACGTGTC 57.651 55.556 0.00 0.00 39.64 3.67
57 58 2.667199 GGCACGGGCTGTAAACGT 60.667 61.111 10.74 0.00 42.17 3.99
75 76 4.612412 TTGACCGGGCCGTCACAC 62.612 66.667 26.32 11.20 42.37 3.82
76 77 3.185299 ATTTGACCGGGCCGTCACA 62.185 57.895 26.32 20.04 42.37 3.58
77 78 2.359478 ATTTGACCGGGCCGTCAC 60.359 61.111 26.32 15.51 42.37 3.67
78 79 2.359354 CATTTGACCGGGCCGTCA 60.359 61.111 26.32 23.57 40.98 4.35
79 80 1.238625 TTTCATTTGACCGGGCCGTC 61.239 55.000 26.32 21.30 0.00 4.79
80 81 1.228306 TTTCATTTGACCGGGCCGT 60.228 52.632 26.32 13.20 0.00 5.68
81 82 1.506262 CTTTCATTTGACCGGGCCG 59.494 57.895 21.46 21.46 0.00 6.13
82 83 1.215382 GCTTTCATTTGACCGGGCC 59.785 57.895 3.83 0.00 0.00 5.80
83 84 0.109132 CAGCTTTCATTTGACCGGGC 60.109 55.000 6.32 1.57 0.00 6.13
84 85 0.109132 GCAGCTTTCATTTGACCGGG 60.109 55.000 6.32 0.00 0.00 5.73
85 86 0.883833 AGCAGCTTTCATTTGACCGG 59.116 50.000 0.00 0.00 0.00 5.28
86 87 2.287788 ACAAGCAGCTTTCATTTGACCG 60.288 45.455 4.38 0.00 0.00 4.79
87 88 3.005155 AGACAAGCAGCTTTCATTTGACC 59.995 43.478 4.38 0.00 0.00 4.02
88 89 4.225208 GAGACAAGCAGCTTTCATTTGAC 58.775 43.478 4.38 0.00 0.00 3.18
89 90 3.254166 GGAGACAAGCAGCTTTCATTTGA 59.746 43.478 4.38 0.00 0.00 2.69
90 91 3.255149 AGGAGACAAGCAGCTTTCATTTG 59.745 43.478 4.38 0.00 0.00 2.32
91 92 3.494332 AGGAGACAAGCAGCTTTCATTT 58.506 40.909 4.38 0.00 0.00 2.32
92 93 3.151912 AGGAGACAAGCAGCTTTCATT 57.848 42.857 4.38 0.00 0.00 2.57
93 94 2.818432 CAAGGAGACAAGCAGCTTTCAT 59.182 45.455 4.38 0.00 0.00 2.57
94 95 2.224606 CAAGGAGACAAGCAGCTTTCA 58.775 47.619 4.38 0.00 0.00 2.69
95 96 1.068679 GCAAGGAGACAAGCAGCTTTC 60.069 52.381 4.38 7.04 33.25 2.62
96 97 0.957362 GCAAGGAGACAAGCAGCTTT 59.043 50.000 4.38 0.00 33.25 3.51
97 98 1.233285 CGCAAGGAGACAAGCAGCTT 61.233 55.000 0.21 0.21 33.25 3.74
98 99 1.670406 CGCAAGGAGACAAGCAGCT 60.670 57.895 0.00 0.00 33.25 4.24
99 100 2.866028 CGCAAGGAGACAAGCAGC 59.134 61.111 0.00 0.00 33.25 5.25
100 101 1.303799 ATGCGCAAGGAGACAAGCAG 61.304 55.000 17.11 0.00 45.13 4.24
101 102 0.036483 TATGCGCAAGGAGACAAGCA 60.036 50.000 17.11 0.00 45.13 3.91
102 103 2.767536 TATGCGCAAGGAGACAAGC 58.232 52.632 17.11 0.00 45.13 4.01
107 108 0.901827 TTCCTGTATGCGCAAGGAGA 59.098 50.000 24.32 15.15 45.13 3.71
108 109 1.398390 GTTTCCTGTATGCGCAAGGAG 59.602 52.381 24.32 15.47 45.13 3.69
109 110 1.271108 TGTTTCCTGTATGCGCAAGGA 60.271 47.619 22.48 22.48 46.91 3.36
110 111 1.135689 GTGTTTCCTGTATGCGCAAGG 60.136 52.381 17.11 18.09 38.28 3.61
111 112 1.464023 CGTGTTTCCTGTATGCGCAAG 60.464 52.381 17.11 7.54 43.44 4.01
112 113 0.515127 CGTGTTTCCTGTATGCGCAA 59.485 50.000 17.11 0.11 0.00 4.85
113 114 0.319986 TCGTGTTTCCTGTATGCGCA 60.320 50.000 14.96 14.96 0.00 6.09
114 115 0.094730 GTCGTGTTTCCTGTATGCGC 59.905 55.000 0.00 0.00 0.00 6.09
115 116 0.719465 GGTCGTGTTTCCTGTATGCG 59.281 55.000 0.00 0.00 0.00 4.73
116 117 1.463444 GTGGTCGTGTTTCCTGTATGC 59.537 52.381 0.00 0.00 0.00 3.14
117 118 2.993899 GAGTGGTCGTGTTTCCTGTATG 59.006 50.000 0.00 0.00 0.00 2.39
118 119 2.897969 AGAGTGGTCGTGTTTCCTGTAT 59.102 45.455 0.00 0.00 0.00 2.29
119 120 2.295349 GAGAGTGGTCGTGTTTCCTGTA 59.705 50.000 0.00 0.00 0.00 2.74
120 121 1.068741 GAGAGTGGTCGTGTTTCCTGT 59.931 52.381 0.00 0.00 0.00 4.00
121 122 1.605712 GGAGAGTGGTCGTGTTTCCTG 60.606 57.143 0.00 0.00 0.00 3.86
122 123 0.680061 GGAGAGTGGTCGTGTTTCCT 59.320 55.000 0.00 0.00 0.00 3.36
123 124 0.680061 AGGAGAGTGGTCGTGTTTCC 59.320 55.000 0.00 0.00 0.00 3.13
124 125 2.528041 AAGGAGAGTGGTCGTGTTTC 57.472 50.000 0.00 0.00 0.00 2.78
125 126 2.169769 TCAAAGGAGAGTGGTCGTGTTT 59.830 45.455 0.00 0.00 0.00 2.83
126 127 1.760613 TCAAAGGAGAGTGGTCGTGTT 59.239 47.619 0.00 0.00 0.00 3.32
127 128 1.410004 TCAAAGGAGAGTGGTCGTGT 58.590 50.000 0.00 0.00 0.00 4.49
128 129 2.526304 TTCAAAGGAGAGTGGTCGTG 57.474 50.000 0.00 0.00 0.00 4.35
129 130 3.771577 ATTTCAAAGGAGAGTGGTCGT 57.228 42.857 0.00 0.00 0.00 4.34
130 131 4.515191 TGAAATTTCAAAGGAGAGTGGTCG 59.485 41.667 18.45 0.00 33.55 4.79
131 132 5.532779 AGTGAAATTTCAAAGGAGAGTGGTC 59.467 40.000 22.07 5.58 39.21 4.02
132 133 5.449553 AGTGAAATTTCAAAGGAGAGTGGT 58.550 37.500 22.07 0.00 39.21 4.16
133 134 6.347725 CGTAGTGAAATTTCAAAGGAGAGTGG 60.348 42.308 22.07 1.19 39.21 4.00
134 135 6.593978 CGTAGTGAAATTTCAAAGGAGAGTG 58.406 40.000 22.07 2.88 39.21 3.51
135 136 5.179555 GCGTAGTGAAATTTCAAAGGAGAGT 59.820 40.000 22.07 3.99 39.21 3.24
136 137 5.409826 AGCGTAGTGAAATTTCAAAGGAGAG 59.590 40.000 22.07 11.00 39.21 3.20
137 138 5.305585 AGCGTAGTGAAATTTCAAAGGAGA 58.694 37.500 22.07 2.21 39.21 3.71
138 139 5.613358 AGCGTAGTGAAATTTCAAAGGAG 57.387 39.130 22.07 13.31 39.21 3.69
139 140 5.119588 CGTAGCGTAGTGAAATTTCAAAGGA 59.880 40.000 22.07 5.58 39.21 3.36
140 141 5.313623 CGTAGCGTAGTGAAATTTCAAAGG 58.686 41.667 22.07 17.91 39.21 3.11
141 142 5.107220 ACCGTAGCGTAGTGAAATTTCAAAG 60.107 40.000 22.07 11.26 39.21 2.77
142 143 4.751098 ACCGTAGCGTAGTGAAATTTCAAA 59.249 37.500 22.07 10.98 39.21 2.69
143 144 4.309099 ACCGTAGCGTAGTGAAATTTCAA 58.691 39.130 22.07 5.45 39.21 2.69
144 145 3.916761 ACCGTAGCGTAGTGAAATTTCA 58.083 40.909 16.91 16.91 34.20 2.69
145 146 3.305361 GGACCGTAGCGTAGTGAAATTTC 59.695 47.826 11.41 11.41 0.00 2.17
146 147 3.256558 GGACCGTAGCGTAGTGAAATTT 58.743 45.455 0.00 0.00 0.00 1.82
147 148 2.231964 TGGACCGTAGCGTAGTGAAATT 59.768 45.455 0.00 0.00 0.00 1.82
148 149 1.820519 TGGACCGTAGCGTAGTGAAAT 59.179 47.619 0.00 0.00 0.00 2.17
149 150 1.068333 GTGGACCGTAGCGTAGTGAAA 60.068 52.381 0.00 0.00 0.00 2.69
150 151 0.523072 GTGGACCGTAGCGTAGTGAA 59.477 55.000 0.00 0.00 0.00 3.18
151 152 0.606130 TGTGGACCGTAGCGTAGTGA 60.606 55.000 0.00 0.00 0.00 3.41
152 153 0.455633 GTGTGGACCGTAGCGTAGTG 60.456 60.000 0.00 0.00 0.00 2.74
153 154 1.589716 GGTGTGGACCGTAGCGTAGT 61.590 60.000 0.00 0.00 30.61 2.73
154 155 1.138247 GGTGTGGACCGTAGCGTAG 59.862 63.158 0.00 0.00 30.61 3.51
155 156 1.177895 TTGGTGTGGACCGTAGCGTA 61.178 55.000 0.00 0.00 46.62 4.42
156 157 2.500714 TTGGTGTGGACCGTAGCGT 61.501 57.895 0.00 0.00 46.62 5.07
157 158 2.025418 GTTGGTGTGGACCGTAGCG 61.025 63.158 0.00 0.00 46.62 4.26
158 159 0.949105 CTGTTGGTGTGGACCGTAGC 60.949 60.000 0.00 0.00 46.62 3.58
159 160 0.949105 GCTGTTGGTGTGGACCGTAG 60.949 60.000 0.00 0.00 46.62 3.51
160 161 1.070105 GCTGTTGGTGTGGACCGTA 59.930 57.895 0.00 0.00 46.62 4.02
161 162 2.203153 GCTGTTGGTGTGGACCGT 60.203 61.111 0.00 0.00 46.62 4.83
162 163 1.961277 GAGCTGTTGGTGTGGACCG 60.961 63.158 0.00 0.00 46.62 4.79
163 164 1.961277 CGAGCTGTTGGTGTGGACC 60.961 63.158 0.00 0.00 43.48 4.46
164 165 2.607892 GCGAGCTGTTGGTGTGGAC 61.608 63.158 0.00 0.00 0.00 4.02
165 166 2.280797 GCGAGCTGTTGGTGTGGA 60.281 61.111 0.00 0.00 0.00 4.02
166 167 2.281070 AGCGAGCTGTTGGTGTGG 60.281 61.111 0.00 0.00 0.00 4.17
167 168 1.287730 GAGAGCGAGCTGTTGGTGTG 61.288 60.000 0.84 0.00 0.00 3.82
168 169 1.005630 GAGAGCGAGCTGTTGGTGT 60.006 57.895 0.84 0.00 0.00 4.16
169 170 0.320247 AAGAGAGCGAGCTGTTGGTG 60.320 55.000 0.84 0.00 0.00 4.17
170 171 0.394565 AAAGAGAGCGAGCTGTTGGT 59.605 50.000 0.84 0.00 0.00 3.67
171 172 1.074752 GAAAGAGAGCGAGCTGTTGG 58.925 55.000 0.84 0.00 0.00 3.77
172 173 1.788258 TGAAAGAGAGCGAGCTGTTG 58.212 50.000 0.84 0.00 0.00 3.33
173 174 2.344950 CATGAAAGAGAGCGAGCTGTT 58.655 47.619 0.84 0.00 0.00 3.16
174 175 2.006056 GCATGAAAGAGAGCGAGCTGT 61.006 52.381 0.84 0.00 0.00 4.40
175 176 0.651551 GCATGAAAGAGAGCGAGCTG 59.348 55.000 0.84 0.00 0.00 4.24
176 177 0.248565 TGCATGAAAGAGAGCGAGCT 59.751 50.000 0.00 0.00 0.00 4.09
177 178 0.651551 CTGCATGAAAGAGAGCGAGC 59.348 55.000 0.00 0.00 0.00 5.03
178 179 0.651551 GCTGCATGAAAGAGAGCGAG 59.348 55.000 0.00 0.00 0.00 5.03
179 180 0.037046 TGCTGCATGAAAGAGAGCGA 60.037 50.000 0.00 0.00 32.05 4.93
180 181 0.374063 CTGCTGCATGAAAGAGAGCG 59.626 55.000 1.31 0.00 32.05 5.03
181 182 0.733729 CCTGCTGCATGAAAGAGAGC 59.266 55.000 1.31 0.00 0.00 4.09
182 183 2.008329 GACCTGCTGCATGAAAGAGAG 58.992 52.381 11.93 0.00 0.00 3.20
183 184 1.339438 GGACCTGCTGCATGAAAGAGA 60.339 52.381 11.93 0.00 0.00 3.10
184 185 1.093159 GGACCTGCTGCATGAAAGAG 58.907 55.000 11.93 0.00 0.00 2.85
185 186 0.694771 AGGACCTGCTGCATGAAAGA 59.305 50.000 11.93 0.00 0.00 2.52
186 187 0.809385 CAGGACCTGCTGCATGAAAG 59.191 55.000 8.99 0.00 0.00 2.62
187 188 2.951269 CAGGACCTGCTGCATGAAA 58.049 52.632 8.99 0.00 0.00 2.69
188 189 4.728409 CAGGACCTGCTGCATGAA 57.272 55.556 8.99 0.00 0.00 2.57
217 218 4.799564 ACAAGTCTTGAAGTGGCAAAAA 57.200 36.364 19.53 0.00 0.00 1.94
218 219 5.906113 TTACAAGTCTTGAAGTGGCAAAA 57.094 34.783 19.53 0.00 0.00 2.44
219 220 5.906113 TTTACAAGTCTTGAAGTGGCAAA 57.094 34.783 19.53 4.94 0.00 3.68
220 221 5.906113 TTTTACAAGTCTTGAAGTGGCAA 57.094 34.783 19.53 0.00 0.00 4.52
221 222 6.272318 CAATTTTACAAGTCTTGAAGTGGCA 58.728 36.000 19.53 0.00 0.00 4.92
222 223 5.175673 GCAATTTTACAAGTCTTGAAGTGGC 59.824 40.000 19.53 6.39 0.00 5.01
223 224 6.272318 TGCAATTTTACAAGTCTTGAAGTGG 58.728 36.000 19.53 0.21 0.00 4.00
224 225 7.935338 ATGCAATTTTACAAGTCTTGAAGTG 57.065 32.000 19.53 12.79 0.00 3.16
225 226 9.066892 TCTATGCAATTTTACAAGTCTTGAAGT 57.933 29.630 19.53 0.00 0.00 3.01
226 227 9.897744 TTCTATGCAATTTTACAAGTCTTGAAG 57.102 29.630 19.53 0.00 0.00 3.02
256 257 9.574516 ACTTTGTTCAGAGTAGTAAAATGGATT 57.425 29.630 0.00 0.00 0.00 3.01
257 258 9.574516 AACTTTGTTCAGAGTAGTAAAATGGAT 57.425 29.630 0.00 0.00 0.00 3.41
258 259 8.836413 CAACTTTGTTCAGAGTAGTAAAATGGA 58.164 33.333 0.00 0.00 0.00 3.41
259 260 8.836413 TCAACTTTGTTCAGAGTAGTAAAATGG 58.164 33.333 0.00 0.00 0.00 3.16
262 263 8.836413 CCATCAACTTTGTTCAGAGTAGTAAAA 58.164 33.333 0.00 0.00 0.00 1.52
263 264 7.990886 ACCATCAACTTTGTTCAGAGTAGTAAA 59.009 33.333 0.00 0.00 0.00 2.01
264 265 7.506114 ACCATCAACTTTGTTCAGAGTAGTAA 58.494 34.615 0.00 0.00 0.00 2.24
265 266 7.062749 ACCATCAACTTTGTTCAGAGTAGTA 57.937 36.000 0.00 0.00 0.00 1.82
266 267 5.930135 ACCATCAACTTTGTTCAGAGTAGT 58.070 37.500 0.00 0.00 0.00 2.73
267 268 6.483307 TGAACCATCAACTTTGTTCAGAGTAG 59.517 38.462 0.00 0.00 41.40 2.57
268 269 6.260050 GTGAACCATCAACTTTGTTCAGAGTA 59.740 38.462 4.33 0.00 45.38 2.59
269 270 5.066505 GTGAACCATCAACTTTGTTCAGAGT 59.933 40.000 4.33 0.00 45.38 3.24
270 271 5.066375 TGTGAACCATCAACTTTGTTCAGAG 59.934 40.000 4.33 0.00 45.38 3.35
271 272 4.946772 TGTGAACCATCAACTTTGTTCAGA 59.053 37.500 4.33 1.06 45.38 3.27
272 273 5.247507 TGTGAACCATCAACTTTGTTCAG 57.752 39.130 4.33 0.00 45.38 3.02
273 274 5.850557 ATGTGAACCATCAACTTTGTTCA 57.149 34.783 0.00 0.00 43.34 3.18
285 286 1.371467 TCAGGGGTGATGTGAACCAT 58.629 50.000 0.00 0.00 39.65 3.55
286 287 1.281867 GATCAGGGGTGATGTGAACCA 59.718 52.381 0.00 0.00 39.65 3.67
287 288 1.561542 AGATCAGGGGTGATGTGAACC 59.438 52.381 0.00 0.00 36.94 3.62
288 289 4.696479 ATAGATCAGGGGTGATGTGAAC 57.304 45.455 0.00 0.00 0.00 3.18
289 290 5.715439 AAATAGATCAGGGGTGATGTGAA 57.285 39.130 0.00 0.00 0.00 3.18
290 291 5.429762 AGAAAATAGATCAGGGGTGATGTGA 59.570 40.000 0.00 0.00 0.00 3.58
291 292 5.530171 CAGAAAATAGATCAGGGGTGATGTG 59.470 44.000 0.00 0.00 0.00 3.21
292 293 5.688807 CAGAAAATAGATCAGGGGTGATGT 58.311 41.667 0.00 0.00 0.00 3.06
293 294 4.518211 GCAGAAAATAGATCAGGGGTGATG 59.482 45.833 0.00 0.00 0.00 3.07
294 295 4.446889 GGCAGAAAATAGATCAGGGGTGAT 60.447 45.833 0.00 0.00 0.00 3.06
295 296 3.117888 GGCAGAAAATAGATCAGGGGTGA 60.118 47.826 0.00 0.00 0.00 4.02
296 297 3.217626 GGCAGAAAATAGATCAGGGGTG 58.782 50.000 0.00 0.00 0.00 4.61
297 298 2.175715 GGGCAGAAAATAGATCAGGGGT 59.824 50.000 0.00 0.00 0.00 4.95
298 299 2.489802 GGGGCAGAAAATAGATCAGGGG 60.490 54.545 0.00 0.00 0.00 4.79
299 300 2.444766 AGGGGCAGAAAATAGATCAGGG 59.555 50.000 0.00 0.00 0.00 4.45
300 301 3.872459 AGGGGCAGAAAATAGATCAGG 57.128 47.619 0.00 0.00 0.00 3.86
301 302 5.067023 GTGAAAGGGGCAGAAAATAGATCAG 59.933 44.000 0.00 0.00 0.00 2.90
302 303 4.949856 GTGAAAGGGGCAGAAAATAGATCA 59.050 41.667 0.00 0.00 0.00 2.92
303 304 4.339530 GGTGAAAGGGGCAGAAAATAGATC 59.660 45.833 0.00 0.00 0.00 2.75
304 305 4.281657 GGTGAAAGGGGCAGAAAATAGAT 58.718 43.478 0.00 0.00 0.00 1.98
305 306 3.563479 GGGTGAAAGGGGCAGAAAATAGA 60.563 47.826 0.00 0.00 0.00 1.98
306 307 2.760650 GGGTGAAAGGGGCAGAAAATAG 59.239 50.000 0.00 0.00 0.00 1.73
307 308 2.558800 GGGGTGAAAGGGGCAGAAAATA 60.559 50.000 0.00 0.00 0.00 1.40
308 309 1.644509 GGGTGAAAGGGGCAGAAAAT 58.355 50.000 0.00 0.00 0.00 1.82
309 310 0.471022 GGGGTGAAAGGGGCAGAAAA 60.471 55.000 0.00 0.00 0.00 2.29
310 311 1.155155 GGGGTGAAAGGGGCAGAAA 59.845 57.895 0.00 0.00 0.00 2.52
311 312 0.476808 TAGGGGTGAAAGGGGCAGAA 60.477 55.000 0.00 0.00 0.00 3.02
312 313 0.253630 ATAGGGGTGAAAGGGGCAGA 60.254 55.000 0.00 0.00 0.00 4.26
313 314 0.183731 GATAGGGGTGAAAGGGGCAG 59.816 60.000 0.00 0.00 0.00 4.85
314 315 0.551377 TGATAGGGGTGAAAGGGGCA 60.551 55.000 0.00 0.00 0.00 5.36
315 316 0.629058 TTGATAGGGGTGAAAGGGGC 59.371 55.000 0.00 0.00 0.00 5.80
316 317 2.623239 GGTTTGATAGGGGTGAAAGGGG 60.623 54.545 0.00 0.00 0.00 4.79
317 318 2.623239 GGGTTTGATAGGGGTGAAAGGG 60.623 54.545 0.00 0.00 0.00 3.95
318 319 2.042433 TGGGTTTGATAGGGGTGAAAGG 59.958 50.000 0.00 0.00 0.00 3.11
319 320 3.449746 TGGGTTTGATAGGGGTGAAAG 57.550 47.619 0.00 0.00 0.00 2.62
320 321 4.325501 GGTATGGGTTTGATAGGGGTGAAA 60.326 45.833 0.00 0.00 0.00 2.69
321 322 3.203487 GGTATGGGTTTGATAGGGGTGAA 59.797 47.826 0.00 0.00 0.00 3.18
322 323 2.781174 GGTATGGGTTTGATAGGGGTGA 59.219 50.000 0.00 0.00 0.00 4.02
323 324 2.512056 TGGTATGGGTTTGATAGGGGTG 59.488 50.000 0.00 0.00 0.00 4.61
324 325 2.783510 CTGGTATGGGTTTGATAGGGGT 59.216 50.000 0.00 0.00 0.00 4.95
325 326 3.053077 TCTGGTATGGGTTTGATAGGGG 58.947 50.000 0.00 0.00 0.00 4.79
326 327 3.458118 TGTCTGGTATGGGTTTGATAGGG 59.542 47.826 0.00 0.00 0.00 3.53
327 328 4.771114 TGTCTGGTATGGGTTTGATAGG 57.229 45.455 0.00 0.00 0.00 2.57
328 329 7.461182 TTTTTGTCTGGTATGGGTTTGATAG 57.539 36.000 0.00 0.00 0.00 2.08
357 358 1.697432 TCGAGACAAACCATCAAGGGT 59.303 47.619 0.00 0.00 45.04 4.34
358 359 2.076863 GTCGAGACAAACCATCAAGGG 58.923 52.381 0.00 0.00 43.89 3.95
359 360 2.076863 GGTCGAGACAAACCATCAAGG 58.923 52.381 5.55 0.00 45.67 3.61
360 361 2.738846 CAGGTCGAGACAAACCATCAAG 59.261 50.000 5.55 0.00 38.06 3.02
361 362 2.549992 CCAGGTCGAGACAAACCATCAA 60.550 50.000 5.55 0.00 38.06 2.57
362 363 1.001974 CCAGGTCGAGACAAACCATCA 59.998 52.381 5.55 0.00 38.06 3.07
363 364 1.275291 TCCAGGTCGAGACAAACCATC 59.725 52.381 5.55 0.00 38.06 3.51
364 365 1.276421 CTCCAGGTCGAGACAAACCAT 59.724 52.381 5.55 0.00 38.06 3.55
365 366 0.679505 CTCCAGGTCGAGACAAACCA 59.320 55.000 5.55 0.00 38.06 3.67
366 367 0.670854 GCTCCAGGTCGAGACAAACC 60.671 60.000 5.55 0.00 35.69 3.27
367 368 0.318762 AGCTCCAGGTCGAGACAAAC 59.681 55.000 5.55 0.00 30.97 2.93
368 369 0.318441 CAGCTCCAGGTCGAGACAAA 59.682 55.000 5.55 0.00 30.97 2.83
369 370 0.539669 TCAGCTCCAGGTCGAGACAA 60.540 55.000 5.55 0.00 30.97 3.18
370 371 1.074951 TCAGCTCCAGGTCGAGACA 59.925 57.895 5.55 0.00 30.97 3.41
371 372 1.244697 TGTCAGCTCCAGGTCGAGAC 61.245 60.000 0.00 0.00 30.97 3.36
372 373 0.323816 ATGTCAGCTCCAGGTCGAGA 60.324 55.000 0.00 0.00 30.97 4.04
373 374 0.179116 CATGTCAGCTCCAGGTCGAG 60.179 60.000 0.00 0.00 0.00 4.04
374 375 1.607801 CCATGTCAGCTCCAGGTCGA 61.608 60.000 0.00 0.00 0.00 4.20
375 376 1.153489 CCATGTCAGCTCCAGGTCG 60.153 63.158 0.00 0.00 0.00 4.79
376 377 1.451028 GCCATGTCAGCTCCAGGTC 60.451 63.158 0.00 0.00 0.00 3.85
377 378 2.673523 GCCATGTCAGCTCCAGGT 59.326 61.111 0.00 0.00 0.00 4.00
378 379 2.513204 CGCCATGTCAGCTCCAGG 60.513 66.667 0.00 0.00 0.00 4.45
379 380 2.513204 CCGCCATGTCAGCTCCAG 60.513 66.667 0.00 0.00 0.00 3.86
380 381 3.321648 ACCGCCATGTCAGCTCCA 61.322 61.111 0.00 0.00 0.00 3.86
381 382 2.821366 CACCGCCATGTCAGCTCC 60.821 66.667 0.00 0.00 0.00 4.70
382 383 2.821366 CCACCGCCATGTCAGCTC 60.821 66.667 0.00 0.00 0.00 4.09
383 384 3.321648 TCCACCGCCATGTCAGCT 61.322 61.111 0.00 0.00 0.00 4.24
384 385 3.127533 GTCCACCGCCATGTCAGC 61.128 66.667 0.00 0.00 0.00 4.26
385 386 1.300971 CTTGTCCACCGCCATGTCAG 61.301 60.000 0.00 0.00 0.00 3.51
386 387 1.302431 CTTGTCCACCGCCATGTCA 60.302 57.895 0.00 0.00 0.00 3.58
387 388 2.040544 CCTTGTCCACCGCCATGTC 61.041 63.158 0.00 0.00 0.00 3.06
388 389 2.034066 CCTTGTCCACCGCCATGT 59.966 61.111 0.00 0.00 0.00 3.21
389 390 2.751436 CCCTTGTCCACCGCCATG 60.751 66.667 0.00 0.00 0.00 3.66
390 391 3.256960 ACCCTTGTCCACCGCCAT 61.257 61.111 0.00 0.00 0.00 4.40
391 392 4.263572 CACCCTTGTCCACCGCCA 62.264 66.667 0.00 0.00 0.00 5.69
394 395 2.976494 AAAGCCACCCTTGTCCACCG 62.976 60.000 0.00 0.00 33.01 4.94
395 396 0.759060 AAAAGCCACCCTTGTCCACC 60.759 55.000 0.00 0.00 33.01 4.61
396 397 1.119684 AAAAAGCCACCCTTGTCCAC 58.880 50.000 0.00 0.00 33.01 4.02
397 398 2.312390 GTAAAAAGCCACCCTTGTCCA 58.688 47.619 0.00 0.00 33.01 4.02
398 399 1.616865 GGTAAAAAGCCACCCTTGTCC 59.383 52.381 0.00 0.00 33.01 4.02
399 400 1.268625 CGGTAAAAAGCCACCCTTGTC 59.731 52.381 0.00 0.00 33.01 3.18
400 401 1.324383 CGGTAAAAAGCCACCCTTGT 58.676 50.000 0.00 0.00 33.01 3.16
401 402 0.601057 CCGGTAAAAAGCCACCCTTG 59.399 55.000 0.00 0.00 33.01 3.61
402 403 1.183030 GCCGGTAAAAAGCCACCCTT 61.183 55.000 1.90 0.00 34.51 3.95
403 404 1.605451 GCCGGTAAAAAGCCACCCT 60.605 57.895 1.90 0.00 0.00 4.34
404 405 1.605451 AGCCGGTAAAAAGCCACCC 60.605 57.895 1.90 0.00 0.00 4.61
405 406 4.090723 AGCCGGTAAAAAGCCACC 57.909 55.556 1.90 0.00 0.00 4.61
807 808 1.597797 CGGTGGTGGAGGTAACGCTA 61.598 60.000 0.00 0.00 46.39 4.26
1049 1050 2.184020 CTCCTCGCCATCACCAACCA 62.184 60.000 0.00 0.00 0.00 3.67
1208 1211 4.211374 ACTTGAACTTCATCGACGAAAAGG 59.789 41.667 20.73 8.67 0.00 3.11
1209 1212 5.133264 CACTTGAACTTCATCGACGAAAAG 58.867 41.667 17.15 17.15 0.00 2.27
1480 1488 4.036518 AGAGTTGGCTCAGGTATCTCAAT 58.963 43.478 0.00 0.00 44.00 2.57
1696 1704 1.888215 ATGTGCTTGTGACTGAGGTG 58.112 50.000 0.00 0.00 0.00 4.00
1706 1714 4.012374 CCTGGTCTTGAATATGTGCTTGT 58.988 43.478 0.00 0.00 0.00 3.16
1727 1735 2.057922 TCCCATCTATCTTTCCCAGCC 58.942 52.381 0.00 0.00 0.00 4.85
1850 1916 1.532007 CACATTTGGCACACATTTGGC 59.468 47.619 0.00 0.00 39.29 4.52
1851 1917 2.544686 CACACATTTGGCACACATTTGG 59.455 45.455 0.00 0.00 39.29 3.28
1852 1918 2.032722 GCACACATTTGGCACACATTTG 60.033 45.455 0.00 0.00 39.29 2.32
1853 1919 2.211806 GCACACATTTGGCACACATTT 58.788 42.857 0.00 0.00 39.29 2.32
1854 1920 1.540797 GGCACACATTTGGCACACATT 60.541 47.619 0.00 0.00 41.65 2.71
1855 1921 0.033781 GGCACACATTTGGCACACAT 59.966 50.000 0.00 0.00 41.65 3.21
1856 1922 1.325476 TGGCACACATTTGGCACACA 61.325 50.000 0.00 0.00 46.39 3.72
1857 1923 0.598158 CTGGCACACATTTGGCACAC 60.598 55.000 0.00 0.00 46.39 3.82
1858 1924 0.754587 TCTGGCACACATTTGGCACA 60.755 50.000 0.00 0.00 46.39 4.57
1988 2062 7.170320 CAGCTAAATTCAATTGCTTCTGTGTTT 59.830 33.333 0.00 0.00 0.00 2.83
2256 2433 6.875926 GCACCTAAAGATAAAATGTGCAAG 57.124 37.500 6.83 0.00 45.08 4.01
2269 2446 4.947388 AGTCAACAAAACTGCACCTAAAGA 59.053 37.500 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.