Multiple sequence alignment - TraesCS1D01G035400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G035400 chr1D 100.000 5023 0 0 1 5023 16381533 16386555 0.000000e+00 9276
1 TraesCS1D01G035400 chr1D 83.363 553 92 0 4471 5023 325555304 325554752 3.470000e-141 512
2 TraesCS1D01G035400 chr7D 98.434 4663 58 4 363 5023 229797933 229793284 0.000000e+00 8192
3 TraesCS1D01G035400 chr7D 95.109 184 6 3 359 541 229792445 229792626 2.290000e-73 287
4 TraesCS1D01G035400 chr4A 96.049 4682 138 15 365 5023 43690646 43695303 0.000000e+00 7577
5 TraesCS1D01G035400 chr4A 95.455 198 5 4 365 561 43695956 43695762 3.780000e-81 313
6 TraesCS1D01G035400 chr1B 91.441 3844 250 40 363 4167 398389868 398393671 0.000000e+00 5203
7 TraesCS1D01G035400 chr1B 91.910 581 47 0 4443 5023 398523033 398523613 0.000000e+00 813
8 TraesCS1D01G035400 chr1B 89.671 213 8 3 32 230 30396604 30396816 4.990000e-65 259
9 TraesCS1D01G035400 chr1B 80.758 343 30 17 4091 4409 398522611 398522941 8.410000e-58 235
10 TraesCS1D01G035400 chr7A 96.358 2581 70 10 363 2934 20705154 20702589 0.000000e+00 4224
11 TraesCS1D01G035400 chr7A 95.513 936 28 3 4090 5023 20701394 20700471 0.000000e+00 1483
12 TraesCS1D01G035400 chr7A 94.500 200 11 0 362 561 20699813 20700012 4.880000e-80 309
13 TraesCS1D01G035400 chr6D 96.482 2530 65 10 363 2869 183955778 183953250 0.000000e+00 4157
14 TraesCS1D01G035400 chr6D 97.328 1647 33 1 3377 5023 183953253 183951618 0.000000e+00 2787
15 TraesCS1D01G035400 chr6D 96.552 203 5 2 360 561 183950958 183951159 8.060000e-88 335
16 TraesCS1D01G035400 chr5D 84.571 2087 316 6 1582 3665 26955735 26957818 0.000000e+00 2065
17 TraesCS1D01G035400 chr2D 84.188 2087 324 6 1582 3665 260862979 260865062 0.000000e+00 2021
18 TraesCS1D01G035400 chr2D 84.130 2092 324 7 1582 3668 613423879 613421791 0.000000e+00 2017
19 TraesCS1D01G035400 chr2D 84.027 2091 325 9 1582 3668 451489833 451487748 0.000000e+00 2002
20 TraesCS1D01G035400 chr2D 80.382 576 106 6 4440 5012 35330657 35331228 9.990000e-117 431
21 TraesCS1D01G035400 chr2A 81.583 581 100 7 4446 5023 771875361 771874785 1.640000e-129 473
22 TraesCS1D01G035400 chr1A 94.421 233 7 2 1 227 16931900 16931668 2.220000e-93 353
23 TraesCS1D01G035400 chr7B 76.939 490 108 5 4537 5023 292077835 292077348 1.780000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G035400 chr1D 16381533 16386555 5022 False 9276.0 9276 100.0000 1 5023 1 chr1D.!!$F1 5022
1 TraesCS1D01G035400 chr1D 325554752 325555304 552 True 512.0 512 83.3630 4471 5023 1 chr1D.!!$R1 552
2 TraesCS1D01G035400 chr7D 229793284 229797933 4649 True 8192.0 8192 98.4340 363 5023 1 chr7D.!!$R1 4660
3 TraesCS1D01G035400 chr4A 43690646 43695303 4657 False 7577.0 7577 96.0490 365 5023 1 chr4A.!!$F1 4658
4 TraesCS1D01G035400 chr1B 398389868 398393671 3803 False 5203.0 5203 91.4410 363 4167 1 chr1B.!!$F2 3804
5 TraesCS1D01G035400 chr1B 398522611 398523613 1002 False 524.0 813 86.3340 4091 5023 2 chr1B.!!$F3 932
6 TraesCS1D01G035400 chr7A 20700471 20705154 4683 True 2853.5 4224 95.9355 363 5023 2 chr7A.!!$R1 4660
7 TraesCS1D01G035400 chr6D 183951618 183955778 4160 True 3472.0 4157 96.9050 363 5023 2 chr6D.!!$R1 4660
8 TraesCS1D01G035400 chr5D 26955735 26957818 2083 False 2065.0 2065 84.5710 1582 3665 1 chr5D.!!$F1 2083
9 TraesCS1D01G035400 chr2D 260862979 260865062 2083 False 2021.0 2021 84.1880 1582 3665 1 chr2D.!!$F2 2083
10 TraesCS1D01G035400 chr2D 613421791 613423879 2088 True 2017.0 2017 84.1300 1582 3668 1 chr2D.!!$R2 2086
11 TraesCS1D01G035400 chr2D 451487748 451489833 2085 True 2002.0 2002 84.0270 1582 3668 1 chr2D.!!$R1 2086
12 TraesCS1D01G035400 chr2D 35330657 35331228 571 False 431.0 431 80.3820 4440 5012 1 chr2D.!!$F1 572
13 TraesCS1D01G035400 chr2A 771874785 771875361 576 True 473.0 473 81.5830 4446 5023 1 chr2A.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.178767 TCCTTGGATCGCCATGACTG 59.821 55.0 0.00 0.00 45.46 3.51 F
305 306 0.457035 CGGCCAATGCTTGCTGTAAT 59.543 50.0 2.24 0.00 37.74 1.89 F
333 334 0.665835 TGTCCGTGTTGCAAATCACC 59.334 50.0 12.96 2.46 0.00 4.02 F
1909 1969 0.680618 TGTCTTTTGCCTTGGCATGG 59.319 50.0 15.58 14.76 0.00 3.66 F
2373 2434 0.464554 GGAGCAATCCAGGTAGCACC 60.465 60.0 0.00 3.16 38.99 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1438 1488 0.042431 AGGTCCTCCTCATGCTCTGT 59.958 55.000 0.00 0.0 40.58 3.41 R
1449 1499 3.006752 CAGAGCAATCATCTAGGTCCTCC 59.993 52.174 0.00 0.0 0.00 4.30 R
2216 2276 3.864789 ACATCTCCAACCTGACAGTTT 57.135 42.857 0.93 0.0 0.00 2.66 R
3307 3370 2.639347 TGTCATCAGGACCACATTGAGT 59.361 45.455 0.00 0.0 46.38 3.41 R
4350 4526 0.179089 GTGTGCCAAATGTGTGCCAA 60.179 50.000 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.298619 AGAGATCTGATCTGACTGTGGG 58.701 50.000 24.04 0.00 40.38 4.61
22 23 3.053019 AGAGATCTGATCTGACTGTGGGA 60.053 47.826 24.04 0.00 40.38 4.37
23 24 3.298619 AGATCTGATCTGACTGTGGGAG 58.701 50.000 18.93 0.00 38.44 4.30
24 25 1.189752 TCTGATCTGACTGTGGGAGC 58.810 55.000 0.00 0.00 0.00 4.70
25 26 1.193323 CTGATCTGACTGTGGGAGCT 58.807 55.000 0.00 0.00 0.00 4.09
26 27 0.900421 TGATCTGACTGTGGGAGCTG 59.100 55.000 0.00 0.00 0.00 4.24
27 28 0.461693 GATCTGACTGTGGGAGCTGC 60.462 60.000 0.00 0.00 0.00 5.25
28 29 1.908340 ATCTGACTGTGGGAGCTGCC 61.908 60.000 18.95 18.95 0.00 4.85
29 30 2.848679 TGACTGTGGGAGCTGCCA 60.849 61.111 24.87 24.87 38.95 4.92
30 31 2.194388 CTGACTGTGGGAGCTGCCAT 62.194 60.000 30.98 15.04 38.95 4.40
31 32 1.001641 GACTGTGGGAGCTGCCATT 60.002 57.895 30.98 17.49 38.95 3.16
32 33 1.303888 ACTGTGGGAGCTGCCATTG 60.304 57.895 30.98 25.41 38.95 2.82
33 34 2.677524 TGTGGGAGCTGCCATTGC 60.678 61.111 30.98 17.94 38.95 3.56
34 35 2.362120 GTGGGAGCTGCCATTGCT 60.362 61.111 30.98 0.00 44.24 3.91
35 36 2.361992 TGGGAGCTGCCATTGCTG 60.362 61.111 24.87 0.00 41.30 4.41
41 42 2.970639 CTGCCATTGCTGCTGCTT 59.029 55.556 17.00 1.52 40.48 3.91
42 43 1.153823 CTGCCATTGCTGCTGCTTC 60.154 57.895 17.00 2.32 40.48 3.86
43 44 1.873270 CTGCCATTGCTGCTGCTTCA 61.873 55.000 17.00 6.42 40.48 3.02
44 45 1.445582 GCCATTGCTGCTGCTTCAC 60.446 57.895 17.00 0.00 40.48 3.18
45 46 1.961378 CCATTGCTGCTGCTTCACA 59.039 52.632 17.00 0.00 40.48 3.58
46 47 3.990034 GCCATTGCTGCTGCTTCACAG 62.990 57.143 17.00 2.37 41.29 3.66
58 59 5.670149 CTGCTTCACAGTCCAATGATATC 57.330 43.478 0.00 0.00 41.86 1.63
59 60 5.363562 TGCTTCACAGTCCAATGATATCT 57.636 39.130 3.98 0.00 0.00 1.98
60 61 5.121105 TGCTTCACAGTCCAATGATATCTG 58.879 41.667 3.98 0.00 0.00 2.90
61 62 5.104817 TGCTTCACAGTCCAATGATATCTGA 60.105 40.000 3.98 0.00 0.00 3.27
62 63 5.819379 GCTTCACAGTCCAATGATATCTGAA 59.181 40.000 3.98 1.73 0.00 3.02
63 64 6.485984 GCTTCACAGTCCAATGATATCTGAAT 59.514 38.462 3.98 0.00 0.00 2.57
64 65 7.307870 GCTTCACAGTCCAATGATATCTGAATC 60.308 40.741 3.98 0.00 0.00 2.52
65 66 7.370905 TCACAGTCCAATGATATCTGAATCT 57.629 36.000 3.98 0.00 0.00 2.40
66 67 7.215085 TCACAGTCCAATGATATCTGAATCTG 58.785 38.462 3.98 8.15 0.00 2.90
67 68 6.427242 CACAGTCCAATGATATCTGAATCTGG 59.573 42.308 3.98 2.35 0.00 3.86
68 69 5.411977 CAGTCCAATGATATCTGAATCTGGC 59.588 44.000 3.98 0.09 0.00 4.85
69 70 4.699257 GTCCAATGATATCTGAATCTGGCC 59.301 45.833 3.98 0.00 0.00 5.36
70 71 4.600547 TCCAATGATATCTGAATCTGGCCT 59.399 41.667 3.32 0.00 0.00 5.19
71 72 4.700692 CCAATGATATCTGAATCTGGCCTG 59.299 45.833 3.32 2.92 0.00 4.85
72 73 3.413846 TGATATCTGAATCTGGCCTGC 57.586 47.619 3.32 0.00 0.00 4.85
73 74 2.039480 TGATATCTGAATCTGGCCTGCC 59.961 50.000 3.32 0.00 0.00 4.85
74 75 0.394192 TATCTGAATCTGGCCTGCCG 59.606 55.000 3.32 0.00 39.42 5.69
75 76 2.955022 ATCTGAATCTGGCCTGCCGC 62.955 60.000 3.32 0.00 39.42 6.53
99 100 4.564116 GCCATGGCATGTGAGCGC 62.564 66.667 32.08 16.78 41.49 5.92
100 101 2.827190 CCATGGCATGTGAGCGCT 60.827 61.111 24.80 11.27 34.64 5.92
101 102 2.407616 CATGGCATGTGAGCGCTG 59.592 61.111 18.48 0.53 34.64 5.18
102 103 2.045634 ATGGCATGTGAGCGCTGT 60.046 55.556 18.48 0.00 34.64 4.40
103 104 2.110967 ATGGCATGTGAGCGCTGTC 61.111 57.895 18.48 8.23 34.64 3.51
104 105 3.503363 GGCATGTGAGCGCTGTCC 61.503 66.667 18.48 0.00 34.64 4.02
105 106 3.503363 GCATGTGAGCGCTGTCCC 61.503 66.667 18.48 0.00 0.00 4.46
106 107 2.821366 CATGTGAGCGCTGTCCCC 60.821 66.667 18.48 0.00 0.00 4.81
107 108 4.101448 ATGTGAGCGCTGTCCCCC 62.101 66.667 18.48 0.00 0.00 5.40
111 112 4.767255 GAGCGCTGTCCCCCACTG 62.767 72.222 18.48 0.00 0.00 3.66
114 115 4.394712 CGCTGTCCCCCACTGTCC 62.395 72.222 0.00 0.00 0.00 4.02
115 116 2.930562 GCTGTCCCCCACTGTCCT 60.931 66.667 0.00 0.00 0.00 3.85
116 117 3.072476 CTGTCCCCCACTGTCCTG 58.928 66.667 0.00 0.00 0.00 3.86
117 118 1.843376 CTGTCCCCCACTGTCCTGT 60.843 63.158 0.00 0.00 0.00 4.00
118 119 2.116983 CTGTCCCCCACTGTCCTGTG 62.117 65.000 0.00 0.00 37.66 3.66
119 120 3.249189 TCCCCCACTGTCCTGTGC 61.249 66.667 0.00 0.00 36.68 4.57
120 121 4.704833 CCCCCACTGTCCTGTGCG 62.705 72.222 0.00 0.00 36.68 5.34
121 122 3.941188 CCCCACTGTCCTGTGCGT 61.941 66.667 0.00 0.00 36.68 5.24
122 123 2.111043 CCCACTGTCCTGTGCGTT 59.889 61.111 0.00 0.00 36.68 4.84
123 124 2.253758 CCCACTGTCCTGTGCGTTG 61.254 63.158 0.00 0.00 36.68 4.10
124 125 2.253758 CCACTGTCCTGTGCGTTGG 61.254 63.158 0.00 0.00 36.68 3.77
125 126 1.227527 CACTGTCCTGTGCGTTGGA 60.228 57.895 0.00 0.00 0.00 3.53
126 127 0.603707 CACTGTCCTGTGCGTTGGAT 60.604 55.000 0.00 0.00 34.58 3.41
127 128 0.320771 ACTGTCCTGTGCGTTGGATC 60.321 55.000 0.00 0.00 34.58 3.36
128 129 0.320683 CTGTCCTGTGCGTTGGATCA 60.321 55.000 0.00 0.00 34.58 2.92
129 130 0.602638 TGTCCTGTGCGTTGGATCAC 60.603 55.000 0.00 0.00 34.58 3.06
130 131 1.374125 TCCTGTGCGTTGGATCACG 60.374 57.895 1.41 1.41 43.36 4.35
131 132 2.390599 CCTGTGCGTTGGATCACGG 61.391 63.158 7.59 0.00 40.69 4.94
132 133 3.027170 CTGTGCGTTGGATCACGGC 62.027 63.158 7.59 0.00 40.69 5.68
133 134 3.799755 GTGCGTTGGATCACGGCC 61.800 66.667 7.59 0.00 40.69 6.13
134 135 4.321966 TGCGTTGGATCACGGCCA 62.322 61.111 2.24 0.00 40.69 5.36
135 136 2.824041 GCGTTGGATCACGGCCAT 60.824 61.111 2.24 0.00 40.69 4.40
136 137 2.406616 GCGTTGGATCACGGCCATT 61.407 57.895 2.24 0.00 40.69 3.16
137 138 1.933115 GCGTTGGATCACGGCCATTT 61.933 55.000 2.24 0.00 40.69 2.32
138 139 0.525761 CGTTGGATCACGGCCATTTT 59.474 50.000 2.24 0.00 36.47 1.82
139 140 1.067915 CGTTGGATCACGGCCATTTTT 60.068 47.619 2.24 0.00 36.47 1.94
140 141 2.336667 GTTGGATCACGGCCATTTTTG 58.663 47.619 2.24 0.00 34.90 2.44
141 142 0.894141 TGGATCACGGCCATTTTTGG 59.106 50.000 2.24 0.00 0.00 3.28
158 159 2.976099 GGCCCTTAATGCCTGTTGT 58.024 52.632 8.52 0.00 45.70 3.32
159 160 1.266178 GGCCCTTAATGCCTGTTGTT 58.734 50.000 8.52 0.00 45.70 2.83
160 161 1.623311 GGCCCTTAATGCCTGTTGTTT 59.377 47.619 8.52 0.00 45.70 2.83
161 162 2.829120 GGCCCTTAATGCCTGTTGTTTA 59.171 45.455 8.52 0.00 45.70 2.01
162 163 3.259625 GGCCCTTAATGCCTGTTGTTTAA 59.740 43.478 8.52 0.00 45.70 1.52
163 164 4.081142 GGCCCTTAATGCCTGTTGTTTAAT 60.081 41.667 8.52 0.00 45.70 1.40
164 165 4.869861 GCCCTTAATGCCTGTTGTTTAATG 59.130 41.667 0.00 0.00 0.00 1.90
165 166 5.418676 CCCTTAATGCCTGTTGTTTAATGG 58.581 41.667 0.00 0.00 0.00 3.16
166 167 4.869861 CCTTAATGCCTGTTGTTTAATGGC 59.130 41.667 0.00 0.00 43.49 4.40
169 170 1.713597 GCCTGTTGTTTAATGGCAGC 58.286 50.000 0.00 0.00 42.79 5.25
170 171 1.981254 CCTGTTGTTTAATGGCAGCG 58.019 50.000 0.00 0.00 0.00 5.18
171 172 1.339711 CTGTTGTTTAATGGCAGCGC 58.660 50.000 0.00 0.00 0.00 5.92
172 173 0.386605 TGTTGTTTAATGGCAGCGCG 60.387 50.000 0.00 0.00 0.00 6.86
173 174 1.070471 GTTGTTTAATGGCAGCGCGG 61.070 55.000 8.83 2.11 0.00 6.46
174 175 2.579518 GTTTAATGGCAGCGCGGC 60.580 61.111 24.90 24.90 41.67 6.53
175 176 4.172772 TTTAATGGCAGCGCGGCG 62.173 61.111 25.72 19.62 45.16 6.46
194 195 2.928396 CAGGGTGGTCCGGTCCTT 60.928 66.667 18.85 3.23 41.52 3.36
195 196 2.928396 AGGGTGGTCCGGTCCTTG 60.928 66.667 18.85 0.00 41.52 3.61
196 197 4.029809 GGGTGGTCCGGTCCTTGG 62.030 72.222 18.85 0.00 33.83 3.61
197 198 2.926242 GGTGGTCCGGTCCTTGGA 60.926 66.667 18.85 0.00 0.00 3.53
198 199 2.298661 GGTGGTCCGGTCCTTGGAT 61.299 63.158 18.85 0.00 37.93 3.41
199 200 1.221021 GTGGTCCGGTCCTTGGATC 59.779 63.158 18.85 0.00 37.93 3.36
200 201 2.355986 TGGTCCGGTCCTTGGATCG 61.356 63.158 18.85 14.76 39.62 3.69
201 202 2.202892 GTCCGGTCCTTGGATCGC 60.203 66.667 16.12 0.85 37.93 4.58
202 203 3.467226 TCCGGTCCTTGGATCGCC 61.467 66.667 16.12 1.09 0.00 5.54
203 204 3.781307 CCGGTCCTTGGATCGCCA 61.781 66.667 16.12 0.00 44.17 5.69
204 205 2.505982 CGGTCCTTGGATCGCCAT 59.494 61.111 9.49 0.00 45.46 4.40
205 206 1.889105 CGGTCCTTGGATCGCCATG 60.889 63.158 9.49 0.00 45.46 3.66
206 207 1.526887 GGTCCTTGGATCGCCATGA 59.473 57.895 0.00 0.00 45.46 3.07
207 208 0.815615 GGTCCTTGGATCGCCATGAC 60.816 60.000 0.00 0.00 45.46 3.06
208 209 0.179000 GTCCTTGGATCGCCATGACT 59.821 55.000 0.00 0.00 45.46 3.41
209 210 0.178767 TCCTTGGATCGCCATGACTG 59.821 55.000 0.00 0.00 45.46 3.51
210 211 0.178767 CCTTGGATCGCCATGACTGA 59.821 55.000 0.00 0.00 45.46 3.41
211 212 1.293924 CTTGGATCGCCATGACTGAC 58.706 55.000 0.00 0.00 45.46 3.51
212 213 0.904649 TTGGATCGCCATGACTGACT 59.095 50.000 0.00 0.00 45.46 3.41
213 214 0.904649 TGGATCGCCATGACTGACTT 59.095 50.000 0.00 0.00 39.92 3.01
214 215 1.278985 TGGATCGCCATGACTGACTTT 59.721 47.619 0.00 0.00 39.92 2.66
215 216 1.667724 GGATCGCCATGACTGACTTTG 59.332 52.381 0.00 0.00 0.00 2.77
216 217 1.667724 GATCGCCATGACTGACTTTGG 59.332 52.381 0.00 0.00 0.00 3.28
217 218 0.955428 TCGCCATGACTGACTTTGGC 60.955 55.000 12.04 12.04 38.91 4.52
218 219 0.957395 CGCCATGACTGACTTTGGCT 60.957 55.000 16.93 0.00 40.02 4.75
219 220 0.524862 GCCATGACTGACTTTGGCTG 59.475 55.000 13.83 0.00 39.18 4.85
220 221 0.524862 CCATGACTGACTTTGGCTGC 59.475 55.000 0.00 0.00 0.00 5.25
221 222 1.531423 CATGACTGACTTTGGCTGCT 58.469 50.000 0.00 0.00 0.00 4.24
222 223 1.199327 CATGACTGACTTTGGCTGCTG 59.801 52.381 0.00 0.00 0.00 4.41
223 224 1.168407 TGACTGACTTTGGCTGCTGC 61.168 55.000 7.10 7.10 38.76 5.25
224 225 0.888285 GACTGACTTTGGCTGCTGCT 60.888 55.000 15.64 0.00 39.59 4.24
225 226 1.170919 ACTGACTTTGGCTGCTGCTG 61.171 55.000 15.64 0.77 39.59 4.41
226 227 2.257676 GACTTTGGCTGCTGCTGC 59.742 61.111 21.42 21.42 39.59 5.25
227 228 2.203451 ACTTTGGCTGCTGCTGCT 60.203 55.556 26.79 7.80 40.48 4.24
228 229 2.258591 CTTTGGCTGCTGCTGCTG 59.741 61.111 26.79 16.73 40.48 4.41
234 235 2.582978 CTGCTGCTGCTGCCTAGA 59.417 61.111 25.44 8.76 40.48 2.43
235 236 1.146485 CTGCTGCTGCTGCCTAGAT 59.854 57.895 25.44 0.00 40.48 1.98
236 237 1.153229 TGCTGCTGCTGCCTAGATG 60.153 57.895 25.44 0.00 40.48 2.90
237 238 1.145598 GCTGCTGCTGCCTAGATGA 59.854 57.895 19.30 0.00 38.71 2.92
238 239 0.881159 GCTGCTGCTGCCTAGATGAG 60.881 60.000 19.30 2.92 38.71 2.90
239 240 0.464870 CTGCTGCTGCCTAGATGAGT 59.535 55.000 13.47 0.00 38.71 3.41
240 241 1.685517 CTGCTGCTGCCTAGATGAGTA 59.314 52.381 13.47 0.00 38.71 2.59
241 242 1.685517 TGCTGCTGCCTAGATGAGTAG 59.314 52.381 13.47 0.00 38.71 2.57
242 243 1.959985 GCTGCTGCCTAGATGAGTAGA 59.040 52.381 3.85 0.00 0.00 2.59
243 244 2.562298 GCTGCTGCCTAGATGAGTAGAT 59.438 50.000 3.85 0.00 0.00 1.98
244 245 3.614630 GCTGCTGCCTAGATGAGTAGATG 60.615 52.174 3.85 0.00 0.00 2.90
245 246 3.825585 CTGCTGCCTAGATGAGTAGATGA 59.174 47.826 0.00 0.00 0.00 2.92
246 247 3.571828 TGCTGCCTAGATGAGTAGATGAC 59.428 47.826 0.00 0.00 0.00 3.06
247 248 3.571828 GCTGCCTAGATGAGTAGATGACA 59.428 47.826 0.00 0.00 0.00 3.58
248 249 4.220382 GCTGCCTAGATGAGTAGATGACAT 59.780 45.833 0.00 0.00 0.00 3.06
249 250 5.279406 GCTGCCTAGATGAGTAGATGACATT 60.279 44.000 0.00 0.00 0.00 2.71
250 251 6.094193 TGCCTAGATGAGTAGATGACATTG 57.906 41.667 0.00 0.00 0.00 2.82
251 252 5.600069 TGCCTAGATGAGTAGATGACATTGT 59.400 40.000 0.00 0.00 0.00 2.71
252 253 6.777580 TGCCTAGATGAGTAGATGACATTGTA 59.222 38.462 0.00 0.00 0.00 2.41
253 254 7.040132 TGCCTAGATGAGTAGATGACATTGTAG 60.040 40.741 0.00 0.00 0.00 2.74
254 255 7.175816 GCCTAGATGAGTAGATGACATTGTAGA 59.824 40.741 0.00 0.00 0.00 2.59
255 256 9.241919 CCTAGATGAGTAGATGACATTGTAGAT 57.758 37.037 0.00 0.00 0.00 1.98
257 258 7.894708 AGATGAGTAGATGACATTGTAGATGG 58.105 38.462 0.00 0.00 0.00 3.51
258 259 7.508636 AGATGAGTAGATGACATTGTAGATGGT 59.491 37.037 0.00 0.00 0.00 3.55
259 260 6.809869 TGAGTAGATGACATTGTAGATGGTG 58.190 40.000 0.00 0.00 0.00 4.17
260 261 5.605534 AGTAGATGACATTGTAGATGGTGC 58.394 41.667 0.00 0.00 0.00 5.01
261 262 4.767578 AGATGACATTGTAGATGGTGCT 57.232 40.909 0.00 0.00 0.00 4.40
262 263 5.876651 AGATGACATTGTAGATGGTGCTA 57.123 39.130 0.00 0.00 0.00 3.49
263 264 5.605534 AGATGACATTGTAGATGGTGCTAC 58.394 41.667 0.00 0.00 40.85 3.58
264 265 5.365025 AGATGACATTGTAGATGGTGCTACT 59.635 40.000 0.00 0.00 41.01 2.57
265 266 5.011090 TGACATTGTAGATGGTGCTACTC 57.989 43.478 0.00 0.00 41.01 2.59
266 267 4.141937 TGACATTGTAGATGGTGCTACTCC 60.142 45.833 0.00 0.00 41.01 3.85
267 268 3.134804 ACATTGTAGATGGTGCTACTCCC 59.865 47.826 0.00 0.00 41.01 4.30
268 269 2.543037 TGTAGATGGTGCTACTCCCA 57.457 50.000 0.00 0.00 41.01 4.37
269 270 2.108168 TGTAGATGGTGCTACTCCCAC 58.892 52.381 0.00 0.00 41.01 4.61
270 271 2.292257 TGTAGATGGTGCTACTCCCACT 60.292 50.000 0.00 0.00 41.01 4.00
271 272 1.958288 AGATGGTGCTACTCCCACTT 58.042 50.000 0.00 0.00 32.49 3.16
272 273 1.556911 AGATGGTGCTACTCCCACTTG 59.443 52.381 0.00 0.00 32.49 3.16
273 274 1.555075 GATGGTGCTACTCCCACTTGA 59.445 52.381 0.00 0.00 32.49 3.02
274 275 1.656587 TGGTGCTACTCCCACTTGAT 58.343 50.000 0.00 0.00 33.78 2.57
275 276 1.555075 TGGTGCTACTCCCACTTGATC 59.445 52.381 0.00 0.00 33.78 2.92
276 277 1.834263 GGTGCTACTCCCACTTGATCT 59.166 52.381 0.00 0.00 33.78 2.75
277 278 2.419297 GGTGCTACTCCCACTTGATCTG 60.419 54.545 0.00 0.00 33.78 2.90
278 279 2.234908 GTGCTACTCCCACTTGATCTGT 59.765 50.000 0.00 0.00 0.00 3.41
279 280 2.497675 TGCTACTCCCACTTGATCTGTC 59.502 50.000 0.00 0.00 0.00 3.51
280 281 2.497675 GCTACTCCCACTTGATCTGTCA 59.502 50.000 0.00 0.00 0.00 3.58
281 282 3.677424 GCTACTCCCACTTGATCTGTCAC 60.677 52.174 0.00 0.00 33.11 3.67
282 283 2.614259 ACTCCCACTTGATCTGTCACT 58.386 47.619 0.00 0.00 33.11 3.41
283 284 2.564947 ACTCCCACTTGATCTGTCACTC 59.435 50.000 0.00 0.00 33.11 3.51
284 285 2.830923 CTCCCACTTGATCTGTCACTCT 59.169 50.000 0.00 0.00 33.11 3.24
285 286 2.828520 TCCCACTTGATCTGTCACTCTC 59.171 50.000 0.00 0.00 33.11 3.20
286 287 2.093764 CCCACTTGATCTGTCACTCTCC 60.094 54.545 0.00 0.00 33.11 3.71
287 288 2.416566 CCACTTGATCTGTCACTCTCCG 60.417 54.545 0.00 0.00 33.11 4.63
288 289 1.821753 ACTTGATCTGTCACTCTCCGG 59.178 52.381 0.00 0.00 33.11 5.14
289 290 0.532573 TTGATCTGTCACTCTCCGGC 59.467 55.000 0.00 0.00 33.11 6.13
290 291 1.323271 TGATCTGTCACTCTCCGGCC 61.323 60.000 0.00 0.00 0.00 6.13
291 292 1.305297 ATCTGTCACTCTCCGGCCA 60.305 57.895 2.24 0.00 0.00 5.36
292 293 0.904865 ATCTGTCACTCTCCGGCCAA 60.905 55.000 2.24 0.00 0.00 4.52
293 294 0.904865 TCTGTCACTCTCCGGCCAAT 60.905 55.000 2.24 0.00 0.00 3.16
294 295 0.742281 CTGTCACTCTCCGGCCAATG 60.742 60.000 2.24 0.00 0.00 2.82
295 296 2.109126 GTCACTCTCCGGCCAATGC 61.109 63.158 2.24 0.00 0.00 3.56
296 297 2.270205 CACTCTCCGGCCAATGCT 59.730 61.111 2.24 0.00 37.74 3.79
297 298 1.377725 CACTCTCCGGCCAATGCTT 60.378 57.895 2.24 0.00 37.74 3.91
298 299 1.377725 ACTCTCCGGCCAATGCTTG 60.378 57.895 2.24 0.00 37.74 4.01
299 300 2.751436 TCTCCGGCCAATGCTTGC 60.751 61.111 2.24 0.00 37.74 4.01
300 301 2.753043 CTCCGGCCAATGCTTGCT 60.753 61.111 2.24 0.00 37.74 3.91
301 302 3.060020 CTCCGGCCAATGCTTGCTG 62.060 63.158 2.24 0.00 37.74 4.41
302 303 3.376078 CCGGCCAATGCTTGCTGT 61.376 61.111 2.24 0.00 37.74 4.40
303 304 2.045708 CCGGCCAATGCTTGCTGTA 61.046 57.895 2.24 0.00 37.74 2.74
304 305 1.594194 CCGGCCAATGCTTGCTGTAA 61.594 55.000 2.24 0.00 37.74 2.41
305 306 0.457035 CGGCCAATGCTTGCTGTAAT 59.543 50.000 2.24 0.00 37.74 1.89
306 307 1.799917 CGGCCAATGCTTGCTGTAATG 60.800 52.381 2.24 0.00 37.74 1.90
307 308 1.205417 GGCCAATGCTTGCTGTAATGT 59.795 47.619 0.00 0.00 37.74 2.71
308 309 2.354003 GGCCAATGCTTGCTGTAATGTT 60.354 45.455 0.00 0.00 37.74 2.71
309 310 3.328505 GCCAATGCTTGCTGTAATGTTT 58.671 40.909 0.00 0.00 33.53 2.83
310 311 3.368843 GCCAATGCTTGCTGTAATGTTTC 59.631 43.478 0.00 0.00 33.53 2.78
311 312 3.928375 CCAATGCTTGCTGTAATGTTTCC 59.072 43.478 0.00 0.00 0.00 3.13
312 313 4.322198 CCAATGCTTGCTGTAATGTTTCCT 60.322 41.667 0.00 0.00 0.00 3.36
313 314 5.232463 CAATGCTTGCTGTAATGTTTCCTT 58.768 37.500 0.00 0.00 0.00 3.36
314 315 4.935352 TGCTTGCTGTAATGTTTCCTTT 57.065 36.364 0.00 0.00 0.00 3.11
315 316 4.619973 TGCTTGCTGTAATGTTTCCTTTG 58.380 39.130 0.00 0.00 0.00 2.77
316 317 4.099266 TGCTTGCTGTAATGTTTCCTTTGT 59.901 37.500 0.00 0.00 0.00 2.83
317 318 4.681483 GCTTGCTGTAATGTTTCCTTTGTC 59.319 41.667 0.00 0.00 0.00 3.18
318 319 4.846779 TGCTGTAATGTTTCCTTTGTCC 57.153 40.909 0.00 0.00 0.00 4.02
319 320 3.252215 TGCTGTAATGTTTCCTTTGTCCG 59.748 43.478 0.00 0.00 0.00 4.79
320 321 3.252458 GCTGTAATGTTTCCTTTGTCCGT 59.748 43.478 0.00 0.00 0.00 4.69
321 322 4.783242 CTGTAATGTTTCCTTTGTCCGTG 58.217 43.478 0.00 0.00 0.00 4.94
322 323 4.200874 TGTAATGTTTCCTTTGTCCGTGT 58.799 39.130 0.00 0.00 0.00 4.49
323 324 4.641094 TGTAATGTTTCCTTTGTCCGTGTT 59.359 37.500 0.00 0.00 0.00 3.32
324 325 3.708563 ATGTTTCCTTTGTCCGTGTTG 57.291 42.857 0.00 0.00 0.00 3.33
325 326 1.133407 TGTTTCCTTTGTCCGTGTTGC 59.867 47.619 0.00 0.00 0.00 4.17
326 327 1.133407 GTTTCCTTTGTCCGTGTTGCA 59.867 47.619 0.00 0.00 0.00 4.08
327 328 1.464734 TTCCTTTGTCCGTGTTGCAA 58.535 45.000 0.00 0.00 0.00 4.08
328 329 1.464734 TCCTTTGTCCGTGTTGCAAA 58.535 45.000 0.00 0.00 0.00 3.68
329 330 2.028130 TCCTTTGTCCGTGTTGCAAAT 58.972 42.857 0.00 0.00 0.00 2.32
330 331 2.034053 TCCTTTGTCCGTGTTGCAAATC 59.966 45.455 0.00 0.00 0.00 2.17
331 332 2.223688 CCTTTGTCCGTGTTGCAAATCA 60.224 45.455 0.00 0.00 0.00 2.57
332 333 2.483583 TTGTCCGTGTTGCAAATCAC 57.516 45.000 0.00 5.32 0.00 3.06
333 334 0.665835 TGTCCGTGTTGCAAATCACC 59.334 50.000 12.96 2.46 0.00 4.02
334 335 0.665835 GTCCGTGTTGCAAATCACCA 59.334 50.000 12.96 0.00 0.00 4.17
335 336 1.269448 GTCCGTGTTGCAAATCACCAT 59.731 47.619 12.96 0.00 0.00 3.55
336 337 1.539388 TCCGTGTTGCAAATCACCATC 59.461 47.619 12.96 0.00 0.00 3.51
337 338 1.541147 CCGTGTTGCAAATCACCATCT 59.459 47.619 12.96 0.00 0.00 2.90
338 339 2.746904 CCGTGTTGCAAATCACCATCTA 59.253 45.455 12.96 0.00 0.00 1.98
339 340 3.190327 CCGTGTTGCAAATCACCATCTAA 59.810 43.478 12.96 0.00 0.00 2.10
340 341 4.320861 CCGTGTTGCAAATCACCATCTAAA 60.321 41.667 12.96 0.00 0.00 1.85
341 342 5.401550 CGTGTTGCAAATCACCATCTAAAT 58.598 37.500 12.96 0.00 0.00 1.40
342 343 5.512788 CGTGTTGCAAATCACCATCTAAATC 59.487 40.000 12.96 0.00 0.00 2.17
343 344 6.389091 GTGTTGCAAATCACCATCTAAATCA 58.611 36.000 0.00 0.00 0.00 2.57
344 345 7.037438 GTGTTGCAAATCACCATCTAAATCAT 58.963 34.615 0.00 0.00 0.00 2.45
345 346 7.221452 GTGTTGCAAATCACCATCTAAATCATC 59.779 37.037 0.00 0.00 0.00 2.92
346 347 7.093858 TGTTGCAAATCACCATCTAAATCATCA 60.094 33.333 0.00 0.00 0.00 3.07
347 348 6.798482 TGCAAATCACCATCTAAATCATCAC 58.202 36.000 0.00 0.00 0.00 3.06
348 349 6.604396 TGCAAATCACCATCTAAATCATCACT 59.396 34.615 0.00 0.00 0.00 3.41
349 350 6.916387 GCAAATCACCATCTAAATCATCACTG 59.084 38.462 0.00 0.00 0.00 3.66
350 351 7.423199 CAAATCACCATCTAAATCATCACTGG 58.577 38.462 0.00 0.00 0.00 4.00
351 352 5.955961 TCACCATCTAAATCATCACTGGA 57.044 39.130 0.00 0.00 0.00 3.86
352 353 6.312141 TCACCATCTAAATCATCACTGGAA 57.688 37.500 0.00 0.00 0.00 3.53
353 354 6.903516 TCACCATCTAAATCATCACTGGAAT 58.096 36.000 0.00 0.00 0.00 3.01
354 355 8.033178 TCACCATCTAAATCATCACTGGAATA 57.967 34.615 0.00 0.00 0.00 1.75
355 356 8.663167 TCACCATCTAAATCATCACTGGAATAT 58.337 33.333 0.00 0.00 0.00 1.28
356 357 8.727910 CACCATCTAAATCATCACTGGAATATG 58.272 37.037 0.00 0.00 0.00 1.78
357 358 7.392673 ACCATCTAAATCATCACTGGAATATGC 59.607 37.037 0.00 0.00 0.00 3.14
358 359 7.392393 CCATCTAAATCATCACTGGAATATGCA 59.608 37.037 0.00 0.00 0.00 3.96
359 360 8.789762 CATCTAAATCATCACTGGAATATGCAA 58.210 33.333 0.00 0.00 0.00 4.08
360 361 8.929260 TCTAAATCATCACTGGAATATGCAAT 57.071 30.769 0.00 0.00 0.00 3.56
361 362 9.358406 TCTAAATCATCACTGGAATATGCAATT 57.642 29.630 0.00 0.00 0.00 2.32
409 410 2.357637 ACAAAGTTGGTGGTTCACATCG 59.642 45.455 0.38 0.00 35.86 3.84
410 411 2.616376 CAAAGTTGGTGGTTCACATCGA 59.384 45.455 0.00 0.00 35.86 3.59
1088 1136 2.335316 TGCTCTTACGTTGGTGGTTT 57.665 45.000 0.00 0.00 0.00 3.27
1165 1215 5.746307 GCAGATTGCAGACATAAAGATGA 57.254 39.130 0.00 0.00 44.26 2.92
1449 1499 1.941294 GATTGGCAGACAGAGCATGAG 59.059 52.381 0.00 0.00 0.00 2.90
1909 1969 0.680618 TGTCTTTTGCCTTGGCATGG 59.319 50.000 15.58 14.76 0.00 3.66
1910 1970 0.681175 GTCTTTTGCCTTGGCATGGT 59.319 50.000 19.40 0.00 0.00 3.55
2216 2276 8.060689 TGGATGGAAAATCAAATCTATCAAGGA 58.939 33.333 0.00 0.00 35.83 3.36
2373 2434 0.464554 GGAGCAATCCAGGTAGCACC 60.465 60.000 0.00 3.16 38.99 5.01
2539 2602 2.945668 GGAGAACTGTTGTGTGCTCTTT 59.054 45.455 0.00 0.00 41.30 2.52
2725 2788 1.846007 TGCTGTGTCCAAGGTTGTTT 58.154 45.000 0.00 0.00 0.00 2.83
3064 3127 5.165961 AGCAATTAGAGCAAAGGTCACTA 57.834 39.130 0.00 0.00 31.89 2.74
3065 3128 5.560724 AGCAATTAGAGCAAAGGTCACTAA 58.439 37.500 0.00 0.00 31.89 2.24
3443 3506 0.394565 GTGTCTGACAGACCAAGGCT 59.605 55.000 28.47 0.00 44.44 4.58
3946 4011 4.947388 AGTCAACAAAACTGCACCTAAAGA 59.053 37.500 0.00 0.00 0.00 2.52
3959 4024 6.875926 GCACCTAAAGATAAAATGTGCAAG 57.124 37.500 6.83 0.00 45.08 4.01
4227 4395 7.170320 CAGCTAAATTCAATTGCTTCTGTGTTT 59.830 33.333 0.00 0.00 0.00 2.83
4348 4524 3.415457 TTACACATCATCTGGCACACA 57.585 42.857 0.00 0.00 0.00 3.72
4349 4525 2.502142 ACACATCATCTGGCACACAT 57.498 45.000 0.00 0.00 0.00 3.21
4350 4526 2.799017 ACACATCATCTGGCACACATT 58.201 42.857 0.00 0.00 0.00 2.71
4351 4527 3.159472 ACACATCATCTGGCACACATTT 58.841 40.909 0.00 0.00 0.00 2.32
4352 4528 3.057104 ACACATCATCTGGCACACATTTG 60.057 43.478 0.00 0.00 0.00 2.32
4353 4529 2.494471 ACATCATCTGGCACACATTTGG 59.506 45.455 0.00 0.00 0.00 3.28
4354 4530 0.889994 TCATCTGGCACACATTTGGC 59.110 50.000 0.00 0.00 42.37 4.52
4356 4532 0.604578 ATCTGGCACACATTTGGCAC 59.395 50.000 0.00 0.00 46.39 5.01
4357 4533 0.754587 TCTGGCACACATTTGGCACA 60.755 50.000 0.00 0.00 46.39 4.57
4358 4534 0.598158 CTGGCACACATTTGGCACAC 60.598 55.000 0.00 0.00 46.39 3.82
4488 4722 2.057922 TCCCATCTATCTTTCCCAGCC 58.942 52.381 0.00 0.00 0.00 4.85
4509 4743 4.012374 CCTGGTCTTGAATATGTGCTTGT 58.988 43.478 0.00 0.00 0.00 3.16
4519 4753 1.888215 ATGTGCTTGTGACTGAGGTG 58.112 50.000 0.00 0.00 0.00 4.00
4735 4969 4.036518 AGAGTTGGCTCAGGTATCTCAAT 58.963 43.478 0.00 0.00 44.00 2.57
5007 5244 4.211374 ACTTGAACTTCATCGACGAAAAGG 59.789 41.667 20.73 8.67 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.053019 TCCCACAGTCAGATCAGATCTCT 60.053 47.826 10.25 2.95 37.58 3.10
1 2 3.295093 TCCCACAGTCAGATCAGATCTC 58.705 50.000 10.25 0.46 37.58 2.75
2 3 3.298619 CTCCCACAGTCAGATCAGATCT 58.701 50.000 7.15 7.15 41.15 2.75
3 4 2.224018 GCTCCCACAGTCAGATCAGATC 60.224 54.545 1.64 1.64 0.00 2.75
4 5 1.761784 GCTCCCACAGTCAGATCAGAT 59.238 52.381 0.00 0.00 0.00 2.90
5 6 1.189752 GCTCCCACAGTCAGATCAGA 58.810 55.000 0.00 0.00 0.00 3.27
6 7 1.134759 CAGCTCCCACAGTCAGATCAG 60.135 57.143 0.00 0.00 0.00 2.90
7 8 0.900421 CAGCTCCCACAGTCAGATCA 59.100 55.000 0.00 0.00 0.00 2.92
8 9 0.461693 GCAGCTCCCACAGTCAGATC 60.462 60.000 0.00 0.00 0.00 2.75
9 10 1.601171 GCAGCTCCCACAGTCAGAT 59.399 57.895 0.00 0.00 0.00 2.90
10 11 2.587247 GGCAGCTCCCACAGTCAGA 61.587 63.158 0.00 0.00 0.00 3.27
11 12 2.046507 GGCAGCTCCCACAGTCAG 60.047 66.667 0.00 0.00 0.00 3.51
12 13 1.782201 AATGGCAGCTCCCACAGTCA 61.782 55.000 0.00 0.00 37.79 3.41
13 14 1.001641 AATGGCAGCTCCCACAGTC 60.002 57.895 0.00 0.00 37.79 3.51
14 15 1.303888 CAATGGCAGCTCCCACAGT 60.304 57.895 0.00 0.00 37.79 3.55
15 16 2.707849 GCAATGGCAGCTCCCACAG 61.708 63.158 0.00 0.00 37.79 3.66
16 17 2.677524 GCAATGGCAGCTCCCACA 60.678 61.111 0.00 0.00 37.79 4.17
17 18 2.362120 AGCAATGGCAGCTCCCAC 60.362 61.111 0.00 0.00 44.61 4.61
18 19 2.361992 CAGCAATGGCAGCTCCCA 60.362 61.111 0.00 0.00 44.61 4.37
24 25 1.153823 GAAGCAGCAGCAATGGCAG 60.154 57.895 3.17 0.00 45.49 4.85
25 26 1.904378 TGAAGCAGCAGCAATGGCA 60.904 52.632 3.17 0.00 45.49 4.92
26 27 1.445582 GTGAAGCAGCAGCAATGGC 60.446 57.895 3.17 0.00 45.49 4.40
27 28 0.109272 CTGTGAAGCAGCAGCAATGG 60.109 55.000 3.17 0.00 45.49 3.16
28 29 3.401577 CTGTGAAGCAGCAGCAATG 57.598 52.632 3.17 0.00 45.49 2.82
37 38 5.104817 TCAGATATCATTGGACTGTGAAGCA 60.105 40.000 5.32 0.00 0.00 3.91
38 39 5.363101 TCAGATATCATTGGACTGTGAAGC 58.637 41.667 5.32 0.00 0.00 3.86
39 40 7.932491 AGATTCAGATATCATTGGACTGTGAAG 59.068 37.037 5.32 0.00 30.16 3.02
40 41 7.713942 CAGATTCAGATATCATTGGACTGTGAA 59.286 37.037 5.32 3.36 30.77 3.18
41 42 7.215085 CAGATTCAGATATCATTGGACTGTGA 58.785 38.462 5.32 0.00 0.00 3.58
42 43 6.427242 CCAGATTCAGATATCATTGGACTGTG 59.573 42.308 5.32 1.06 0.00 3.66
43 44 6.531923 CCAGATTCAGATATCATTGGACTGT 58.468 40.000 5.32 0.00 0.00 3.55
44 45 5.411977 GCCAGATTCAGATATCATTGGACTG 59.588 44.000 5.32 7.07 0.00 3.51
45 46 5.514484 GGCCAGATTCAGATATCATTGGACT 60.514 44.000 5.32 0.00 29.46 3.85
46 47 4.699257 GGCCAGATTCAGATATCATTGGAC 59.301 45.833 5.32 1.86 0.00 4.02
47 48 4.600547 AGGCCAGATTCAGATATCATTGGA 59.399 41.667 5.01 0.00 0.00 3.53
48 49 4.700692 CAGGCCAGATTCAGATATCATTGG 59.299 45.833 5.01 4.50 0.00 3.16
49 50 4.156190 GCAGGCCAGATTCAGATATCATTG 59.844 45.833 5.01 0.00 0.00 2.82
50 51 4.333690 GCAGGCCAGATTCAGATATCATT 58.666 43.478 5.01 0.00 0.00 2.57
51 52 3.308259 GGCAGGCCAGATTCAGATATCAT 60.308 47.826 5.01 0.00 35.81 2.45
52 53 2.039480 GGCAGGCCAGATTCAGATATCA 59.961 50.000 5.01 0.00 35.81 2.15
53 54 2.709213 GGCAGGCCAGATTCAGATATC 58.291 52.381 5.01 0.00 35.81 1.63
54 55 1.002888 CGGCAGGCCAGATTCAGATAT 59.997 52.381 5.01 0.00 35.37 1.63
55 56 0.394192 CGGCAGGCCAGATTCAGATA 59.606 55.000 5.01 0.00 35.37 1.98
56 57 1.147824 CGGCAGGCCAGATTCAGAT 59.852 57.895 5.01 0.00 35.37 2.90
57 58 2.586245 CGGCAGGCCAGATTCAGA 59.414 61.111 5.01 0.00 35.37 3.27
58 59 3.207669 GCGGCAGGCCAGATTCAG 61.208 66.667 5.01 0.00 35.37 3.02
82 83 4.564116 GCGCTCACATGCCATGGC 62.564 66.667 30.54 30.54 42.35 4.40
83 84 2.827190 AGCGCTCACATGCCATGG 60.827 61.111 2.64 7.63 33.60 3.66
84 85 2.319011 GACAGCGCTCACATGCCATG 62.319 60.000 7.13 2.40 0.00 3.66
85 86 2.045634 ACAGCGCTCACATGCCAT 60.046 55.556 7.13 0.00 0.00 4.40
86 87 2.743538 GACAGCGCTCACATGCCA 60.744 61.111 7.13 0.00 0.00 4.92
87 88 3.503363 GGACAGCGCTCACATGCC 61.503 66.667 7.13 0.00 0.00 4.40
88 89 3.503363 GGGACAGCGCTCACATGC 61.503 66.667 7.13 0.00 0.00 4.06
89 90 2.821366 GGGGACAGCGCTCACATG 60.821 66.667 7.13 0.00 0.00 3.21
90 91 4.101448 GGGGGACAGCGCTCACAT 62.101 66.667 7.13 0.00 0.00 3.21
94 95 4.767255 CAGTGGGGGACAGCGCTC 62.767 72.222 7.13 0.00 0.00 5.03
97 98 4.394712 GGACAGTGGGGGACAGCG 62.395 72.222 0.00 0.00 0.00 5.18
98 99 2.930562 AGGACAGTGGGGGACAGC 60.931 66.667 0.00 0.00 0.00 4.40
99 100 1.843376 ACAGGACAGTGGGGGACAG 60.843 63.158 0.00 0.00 0.00 3.51
100 101 2.146724 CACAGGACAGTGGGGGACA 61.147 63.158 0.00 0.00 35.88 4.02
101 102 2.750350 CACAGGACAGTGGGGGAC 59.250 66.667 0.00 0.00 35.88 4.46
102 103 3.249189 GCACAGGACAGTGGGGGA 61.249 66.667 0.00 0.00 39.87 4.81
103 104 4.704833 CGCACAGGACAGTGGGGG 62.705 72.222 4.37 0.00 45.47 5.40
106 107 2.253758 CCAACGCACAGGACAGTGG 61.254 63.158 0.00 0.00 39.87 4.00
107 108 0.603707 ATCCAACGCACAGGACAGTG 60.604 55.000 0.00 0.00 42.37 3.66
108 109 0.320771 GATCCAACGCACAGGACAGT 60.321 55.000 0.00 0.00 36.60 3.55
109 110 0.320683 TGATCCAACGCACAGGACAG 60.321 55.000 0.00 0.00 36.60 3.51
110 111 0.602638 GTGATCCAACGCACAGGACA 60.603 55.000 0.00 0.00 36.60 4.02
111 112 1.626654 CGTGATCCAACGCACAGGAC 61.627 60.000 0.00 0.00 36.60 3.85
112 113 1.374125 CGTGATCCAACGCACAGGA 60.374 57.895 0.00 0.00 36.65 3.86
113 114 2.390599 CCGTGATCCAACGCACAGG 61.391 63.158 0.23 0.00 42.23 4.00
114 115 3.027170 GCCGTGATCCAACGCACAG 62.027 63.158 0.23 0.00 42.23 3.66
115 116 3.047280 GCCGTGATCCAACGCACA 61.047 61.111 0.23 0.00 42.23 4.57
116 117 3.799755 GGCCGTGATCCAACGCAC 61.800 66.667 0.23 0.00 42.23 5.34
117 118 3.620419 ATGGCCGTGATCCAACGCA 62.620 57.895 0.00 0.00 42.23 5.24
118 119 1.933115 AAATGGCCGTGATCCAACGC 61.933 55.000 0.00 0.00 42.23 4.84
119 120 0.525761 AAAATGGCCGTGATCCAACG 59.474 50.000 0.00 0.00 43.20 4.10
120 121 2.336667 CAAAAATGGCCGTGATCCAAC 58.663 47.619 0.00 0.00 37.13 3.77
121 122 1.274728 CCAAAAATGGCCGTGATCCAA 59.725 47.619 0.00 0.00 37.13 3.53
122 123 0.894141 CCAAAAATGGCCGTGATCCA 59.106 50.000 0.00 0.00 38.09 3.41
123 124 3.739077 CCAAAAATGGCCGTGATCC 57.261 52.632 0.00 0.00 0.00 3.36
141 142 4.529109 TTAAACAACAGGCATTAAGGGC 57.471 40.909 5.41 5.41 0.00 5.19
142 143 5.418676 CCATTAAACAACAGGCATTAAGGG 58.581 41.667 0.00 0.00 34.23 3.95
143 144 4.869861 GCCATTAAACAACAGGCATTAAGG 59.130 41.667 0.00 0.00 44.59 2.69
150 151 1.713597 GCTGCCATTAAACAACAGGC 58.286 50.000 0.00 0.00 45.41 4.85
151 152 1.981254 CGCTGCCATTAAACAACAGG 58.019 50.000 0.00 0.00 0.00 4.00
152 153 1.339711 GCGCTGCCATTAAACAACAG 58.660 50.000 0.00 0.00 0.00 3.16
153 154 0.386605 CGCGCTGCCATTAAACAACA 60.387 50.000 5.56 0.00 0.00 3.33
154 155 1.070471 CCGCGCTGCCATTAAACAAC 61.070 55.000 5.56 0.00 0.00 3.32
155 156 1.211449 CCGCGCTGCCATTAAACAA 59.789 52.632 5.56 0.00 0.00 2.83
156 157 2.874019 CCGCGCTGCCATTAAACA 59.126 55.556 5.56 0.00 0.00 2.83
157 158 2.579518 GCCGCGCTGCCATTAAAC 60.580 61.111 13.36 0.00 0.00 2.01
158 159 4.172772 CGCCGCGCTGCCATTAAA 62.173 61.111 18.47 0.00 0.00 1.52
177 178 2.928396 AAGGACCGGACCACCCTG 60.928 66.667 24.99 0.00 0.00 4.45
178 179 2.928396 CAAGGACCGGACCACCCT 60.928 66.667 24.99 11.36 0.00 4.34
179 180 4.029809 CCAAGGACCGGACCACCC 62.030 72.222 24.99 9.29 0.00 4.61
180 181 2.253403 GATCCAAGGACCGGACCACC 62.253 65.000 24.99 13.66 34.69 4.61
181 182 1.221021 GATCCAAGGACCGGACCAC 59.779 63.158 24.99 3.57 34.69 4.16
182 183 2.355986 CGATCCAAGGACCGGACCA 61.356 63.158 24.99 4.33 34.69 4.02
183 184 2.499685 CGATCCAAGGACCGGACC 59.500 66.667 15.76 15.76 34.69 4.46
184 185 2.202892 GCGATCCAAGGACCGGAC 60.203 66.667 9.46 0.00 34.69 4.79
185 186 3.467226 GGCGATCCAAGGACCGGA 61.467 66.667 9.46 0.00 36.84 5.14
186 187 3.781307 TGGCGATCCAAGGACCGG 61.781 66.667 4.82 0.00 39.99 5.28
195 196 1.667724 CAAAGTCAGTCATGGCGATCC 59.332 52.381 0.00 0.00 35.66 3.36
196 197 1.667724 CCAAAGTCAGTCATGGCGATC 59.332 52.381 0.00 0.00 35.66 3.69
197 198 1.742761 CCAAAGTCAGTCATGGCGAT 58.257 50.000 0.00 0.00 35.66 4.58
198 199 3.231734 CCAAAGTCAGTCATGGCGA 57.768 52.632 0.00 0.00 35.66 5.54
201 202 0.524862 GCAGCCAAAGTCAGTCATGG 59.475 55.000 0.00 0.00 36.00 3.66
202 203 1.199327 CAGCAGCCAAAGTCAGTCATG 59.801 52.381 0.00 0.00 0.00 3.07
203 204 1.531423 CAGCAGCCAAAGTCAGTCAT 58.469 50.000 0.00 0.00 0.00 3.06
204 205 1.168407 GCAGCAGCCAAAGTCAGTCA 61.168 55.000 0.00 0.00 33.58 3.41
205 206 0.888285 AGCAGCAGCCAAAGTCAGTC 60.888 55.000 0.00 0.00 43.56 3.51
206 207 1.150081 AGCAGCAGCCAAAGTCAGT 59.850 52.632 0.00 0.00 43.56 3.41
207 208 1.579932 CAGCAGCAGCCAAAGTCAG 59.420 57.895 0.00 0.00 43.56 3.51
208 209 2.558286 GCAGCAGCAGCCAAAGTCA 61.558 57.895 0.00 0.00 43.56 3.41
209 210 2.257676 GCAGCAGCAGCCAAAGTC 59.742 61.111 0.00 0.00 43.56 3.01
210 211 2.203451 AGCAGCAGCAGCCAAAGT 60.203 55.556 6.10 0.00 45.49 2.66
211 212 2.258591 CAGCAGCAGCAGCCAAAG 59.741 61.111 6.10 0.00 45.49 2.77
212 213 3.986006 GCAGCAGCAGCAGCCAAA 61.986 61.111 7.26 0.00 46.35 3.28
217 218 1.146485 ATCTAGGCAGCAGCAGCAG 59.854 57.895 12.41 1.37 45.49 4.24
218 219 1.153229 CATCTAGGCAGCAGCAGCA 60.153 57.895 12.41 0.00 45.49 4.41
219 220 0.881159 CTCATCTAGGCAGCAGCAGC 60.881 60.000 2.65 0.00 44.61 5.25
220 221 0.464870 ACTCATCTAGGCAGCAGCAG 59.535 55.000 2.65 0.00 44.61 4.24
221 222 1.685517 CTACTCATCTAGGCAGCAGCA 59.314 52.381 2.65 0.00 44.61 4.41
222 223 1.959985 TCTACTCATCTAGGCAGCAGC 59.040 52.381 0.00 0.00 41.10 5.25
223 224 3.825585 TCATCTACTCATCTAGGCAGCAG 59.174 47.826 0.00 0.00 0.00 4.24
224 225 3.571828 GTCATCTACTCATCTAGGCAGCA 59.428 47.826 0.00 0.00 0.00 4.41
225 226 3.571828 TGTCATCTACTCATCTAGGCAGC 59.428 47.826 0.00 0.00 0.00 5.25
226 227 5.981088 ATGTCATCTACTCATCTAGGCAG 57.019 43.478 0.00 0.00 0.00 4.85
227 228 5.600069 ACAATGTCATCTACTCATCTAGGCA 59.400 40.000 0.00 0.00 0.00 4.75
228 229 6.095432 ACAATGTCATCTACTCATCTAGGC 57.905 41.667 0.00 0.00 0.00 3.93
229 230 8.628630 TCTACAATGTCATCTACTCATCTAGG 57.371 38.462 0.00 0.00 0.00 3.02
231 232 9.018582 CCATCTACAATGTCATCTACTCATCTA 57.981 37.037 0.00 0.00 0.00 1.98
232 233 7.508636 ACCATCTACAATGTCATCTACTCATCT 59.491 37.037 0.00 0.00 0.00 2.90
233 234 7.598118 CACCATCTACAATGTCATCTACTCATC 59.402 40.741 0.00 0.00 0.00 2.92
234 235 7.440198 CACCATCTACAATGTCATCTACTCAT 58.560 38.462 0.00 0.00 0.00 2.90
235 236 6.683861 GCACCATCTACAATGTCATCTACTCA 60.684 42.308 0.00 0.00 0.00 3.41
236 237 5.694006 GCACCATCTACAATGTCATCTACTC 59.306 44.000 0.00 0.00 0.00 2.59
237 238 5.365025 AGCACCATCTACAATGTCATCTACT 59.635 40.000 0.00 0.00 0.00 2.57
238 239 5.605534 AGCACCATCTACAATGTCATCTAC 58.394 41.667 0.00 0.00 0.00 2.59
239 240 5.876651 AGCACCATCTACAATGTCATCTA 57.123 39.130 0.00 0.00 0.00 1.98
240 241 4.767578 AGCACCATCTACAATGTCATCT 57.232 40.909 0.00 0.00 0.00 2.90
241 242 5.605534 AGTAGCACCATCTACAATGTCATC 58.394 41.667 0.00 0.00 40.95 2.92
242 243 5.453903 GGAGTAGCACCATCTACAATGTCAT 60.454 44.000 0.00 0.00 40.95 3.06
243 244 4.141937 GGAGTAGCACCATCTACAATGTCA 60.142 45.833 0.00 0.00 40.95 3.58
244 245 4.372656 GGAGTAGCACCATCTACAATGTC 58.627 47.826 0.00 0.00 40.95 3.06
245 246 3.134804 GGGAGTAGCACCATCTACAATGT 59.865 47.826 0.00 0.00 40.95 2.71
246 247 3.134623 TGGGAGTAGCACCATCTACAATG 59.865 47.826 4.10 0.00 40.95 2.82
247 248 3.134804 GTGGGAGTAGCACCATCTACAAT 59.865 47.826 4.10 0.00 40.95 2.71
248 249 2.500098 GTGGGAGTAGCACCATCTACAA 59.500 50.000 4.10 0.00 40.95 2.41
249 250 2.108168 GTGGGAGTAGCACCATCTACA 58.892 52.381 4.10 0.00 40.95 2.74
250 251 2.389715 AGTGGGAGTAGCACCATCTAC 58.610 52.381 0.00 0.00 39.30 2.59
251 252 2.766263 CAAGTGGGAGTAGCACCATCTA 59.234 50.000 0.00 0.00 39.30 1.98
252 253 1.556911 CAAGTGGGAGTAGCACCATCT 59.443 52.381 0.00 0.00 39.30 2.90
253 254 1.555075 TCAAGTGGGAGTAGCACCATC 59.445 52.381 0.00 0.00 39.30 3.51
254 255 1.656587 TCAAGTGGGAGTAGCACCAT 58.343 50.000 0.00 0.00 39.30 3.55
255 256 1.555075 GATCAAGTGGGAGTAGCACCA 59.445 52.381 0.00 0.00 0.00 4.17
256 257 1.834263 AGATCAAGTGGGAGTAGCACC 59.166 52.381 0.00 0.00 0.00 5.01
257 258 2.234908 ACAGATCAAGTGGGAGTAGCAC 59.765 50.000 0.00 0.00 0.00 4.40
258 259 2.497675 GACAGATCAAGTGGGAGTAGCA 59.502 50.000 0.00 0.00 0.00 3.49
259 260 2.497675 TGACAGATCAAGTGGGAGTAGC 59.502 50.000 0.00 0.00 0.00 3.58
260 261 3.766591 AGTGACAGATCAAGTGGGAGTAG 59.233 47.826 0.00 0.00 36.31 2.57
261 262 3.764434 GAGTGACAGATCAAGTGGGAGTA 59.236 47.826 0.00 0.00 36.31 2.59
262 263 2.564947 GAGTGACAGATCAAGTGGGAGT 59.435 50.000 0.00 0.00 36.31 3.85
263 264 2.830923 AGAGTGACAGATCAAGTGGGAG 59.169 50.000 0.00 0.00 36.31 4.30
264 265 2.828520 GAGAGTGACAGATCAAGTGGGA 59.171 50.000 0.00 0.00 36.31 4.37
265 266 2.093764 GGAGAGTGACAGATCAAGTGGG 60.094 54.545 0.00 0.00 36.31 4.61
266 267 2.416566 CGGAGAGTGACAGATCAAGTGG 60.417 54.545 0.00 0.00 36.31 4.00
267 268 2.416566 CCGGAGAGTGACAGATCAAGTG 60.417 54.545 0.00 0.00 36.31 3.16
268 269 1.821753 CCGGAGAGTGACAGATCAAGT 59.178 52.381 0.00 0.00 36.31 3.16
269 270 1.470632 GCCGGAGAGTGACAGATCAAG 60.471 57.143 5.05 0.00 36.31 3.02
270 271 0.532573 GCCGGAGAGTGACAGATCAA 59.467 55.000 5.05 0.00 36.31 2.57
271 272 1.323271 GGCCGGAGAGTGACAGATCA 61.323 60.000 5.05 0.00 0.00 2.92
272 273 1.323271 TGGCCGGAGAGTGACAGATC 61.323 60.000 5.05 0.00 0.00 2.75
273 274 0.904865 TTGGCCGGAGAGTGACAGAT 60.905 55.000 5.05 0.00 0.00 2.90
274 275 0.904865 ATTGGCCGGAGAGTGACAGA 60.905 55.000 5.05 0.00 0.00 3.41
275 276 0.742281 CATTGGCCGGAGAGTGACAG 60.742 60.000 5.05 0.00 0.00 3.51
276 277 1.296392 CATTGGCCGGAGAGTGACA 59.704 57.895 5.05 0.00 0.00 3.58
277 278 2.109126 GCATTGGCCGGAGAGTGAC 61.109 63.158 5.05 0.00 0.00 3.67
278 279 1.841302 AAGCATTGGCCGGAGAGTGA 61.841 55.000 5.05 0.00 42.56 3.41
279 280 1.377725 AAGCATTGGCCGGAGAGTG 60.378 57.895 5.05 0.00 42.56 3.51
280 281 1.377725 CAAGCATTGGCCGGAGAGT 60.378 57.895 5.05 0.00 43.94 3.24
281 282 3.506108 CAAGCATTGGCCGGAGAG 58.494 61.111 5.05 0.00 43.94 3.20
291 292 5.473066 AAGGAAACATTACAGCAAGCATT 57.527 34.783 0.00 0.00 0.00 3.56
292 293 5.221501 ACAAAGGAAACATTACAGCAAGCAT 60.222 36.000 0.00 0.00 0.00 3.79
293 294 4.099266 ACAAAGGAAACATTACAGCAAGCA 59.901 37.500 0.00 0.00 0.00 3.91
294 295 4.620982 ACAAAGGAAACATTACAGCAAGC 58.379 39.130 0.00 0.00 0.00 4.01
295 296 5.222631 GGACAAAGGAAACATTACAGCAAG 58.777 41.667 0.00 0.00 0.00 4.01
296 297 4.261405 CGGACAAAGGAAACATTACAGCAA 60.261 41.667 0.00 0.00 0.00 3.91
297 298 3.252215 CGGACAAAGGAAACATTACAGCA 59.748 43.478 0.00 0.00 0.00 4.41
298 299 3.252458 ACGGACAAAGGAAACATTACAGC 59.748 43.478 0.00 0.00 0.00 4.40
299 300 4.274950 ACACGGACAAAGGAAACATTACAG 59.725 41.667 0.00 0.00 0.00 2.74
300 301 4.200874 ACACGGACAAAGGAAACATTACA 58.799 39.130 0.00 0.00 0.00 2.41
301 302 4.823790 ACACGGACAAAGGAAACATTAC 57.176 40.909 0.00 0.00 0.00 1.89
302 303 4.498345 GCAACACGGACAAAGGAAACATTA 60.498 41.667 0.00 0.00 0.00 1.90
303 304 3.736740 GCAACACGGACAAAGGAAACATT 60.737 43.478 0.00 0.00 0.00 2.71
304 305 2.223711 GCAACACGGACAAAGGAAACAT 60.224 45.455 0.00 0.00 0.00 2.71
305 306 1.133407 GCAACACGGACAAAGGAAACA 59.867 47.619 0.00 0.00 0.00 2.83
306 307 1.133407 TGCAACACGGACAAAGGAAAC 59.867 47.619 0.00 0.00 0.00 2.78
307 308 1.464734 TGCAACACGGACAAAGGAAA 58.535 45.000 0.00 0.00 0.00 3.13
308 309 1.464734 TTGCAACACGGACAAAGGAA 58.535 45.000 0.00 0.00 0.00 3.36
309 310 1.464734 TTTGCAACACGGACAAAGGA 58.535 45.000 0.00 0.00 0.00 3.36
310 311 2.223688 TGATTTGCAACACGGACAAAGG 60.224 45.455 0.00 0.00 36.78 3.11
311 312 2.788786 GTGATTTGCAACACGGACAAAG 59.211 45.455 0.00 0.00 36.78 2.77
312 313 2.480416 GGTGATTTGCAACACGGACAAA 60.480 45.455 12.48 0.00 37.82 2.83
313 314 1.066303 GGTGATTTGCAACACGGACAA 59.934 47.619 12.48 0.00 37.82 3.18
314 315 0.665835 GGTGATTTGCAACACGGACA 59.334 50.000 12.48 0.00 37.82 4.02
315 316 0.665835 TGGTGATTTGCAACACGGAC 59.334 50.000 12.48 2.29 39.87 4.79
316 317 3.102090 TGGTGATTTGCAACACGGA 57.898 47.368 12.48 1.57 39.87 4.69
321 322 7.221452 GTGATGATTTAGATGGTGATTTGCAAC 59.779 37.037 0.00 0.00 33.72 4.17
322 323 7.123098 AGTGATGATTTAGATGGTGATTTGCAA 59.877 33.333 0.00 0.00 0.00 4.08
323 324 6.604396 AGTGATGATTTAGATGGTGATTTGCA 59.396 34.615 0.00 0.00 0.00 4.08
324 325 6.916387 CAGTGATGATTTAGATGGTGATTTGC 59.084 38.462 0.00 0.00 0.00 3.68
325 326 7.283807 TCCAGTGATGATTTAGATGGTGATTTG 59.716 37.037 0.00 0.00 0.00 2.32
326 327 7.348815 TCCAGTGATGATTTAGATGGTGATTT 58.651 34.615 0.00 0.00 0.00 2.17
327 328 6.903516 TCCAGTGATGATTTAGATGGTGATT 58.096 36.000 0.00 0.00 0.00 2.57
328 329 6.505048 TCCAGTGATGATTTAGATGGTGAT 57.495 37.500 0.00 0.00 0.00 3.06
329 330 5.955961 TCCAGTGATGATTTAGATGGTGA 57.044 39.130 0.00 0.00 0.00 4.02
330 331 8.727910 CATATTCCAGTGATGATTTAGATGGTG 58.272 37.037 0.00 0.00 0.00 4.17
331 332 7.392673 GCATATTCCAGTGATGATTTAGATGGT 59.607 37.037 0.00 0.00 0.00 3.55
332 333 7.392393 TGCATATTCCAGTGATGATTTAGATGG 59.608 37.037 0.00 0.00 0.00 3.51
333 334 8.331730 TGCATATTCCAGTGATGATTTAGATG 57.668 34.615 0.00 0.00 0.00 2.90
334 335 8.929260 TTGCATATTCCAGTGATGATTTAGAT 57.071 30.769 0.00 0.00 0.00 1.98
335 336 8.929260 ATTGCATATTCCAGTGATGATTTAGA 57.071 30.769 0.00 0.00 0.00 2.10
336 337 9.406828 CAATTGCATATTCCAGTGATGATTTAG 57.593 33.333 0.00 0.00 0.00 1.85
337 338 9.134055 TCAATTGCATATTCCAGTGATGATTTA 57.866 29.630 0.00 0.00 0.00 1.40
338 339 8.014070 TCAATTGCATATTCCAGTGATGATTT 57.986 30.769 0.00 0.00 0.00 2.17
339 340 7.591421 TCAATTGCATATTCCAGTGATGATT 57.409 32.000 0.00 0.00 0.00 2.57
340 341 7.591421 TTCAATTGCATATTCCAGTGATGAT 57.409 32.000 0.00 0.00 0.00 2.45
341 342 7.407393 TTTCAATTGCATATTCCAGTGATGA 57.593 32.000 0.00 0.00 0.00 2.92
342 343 8.481974 TTTTTCAATTGCATATTCCAGTGATG 57.518 30.769 0.00 0.00 0.00 3.07
384 385 3.574396 TGTGAACCACCAACTTTGTTCAA 59.426 39.130 5.59 0.00 45.98 2.69
409 410 3.885901 GGCAGAAAAATAGATCAGGGGTC 59.114 47.826 0.00 0.00 0.00 4.46
410 411 3.373110 GGGCAGAAAAATAGATCAGGGGT 60.373 47.826 0.00 0.00 0.00 4.95
1088 1136 5.129634 TCTGCATAAAAGTGACCTCAACAA 58.870 37.500 0.00 0.00 0.00 2.83
1165 1215 4.041567 TGTCAAAGACTCACCATGGTATGT 59.958 41.667 19.28 18.71 33.15 2.29
1411 1461 2.229675 TCACTGTCAGTGTGCTCTTG 57.770 50.000 27.97 4.86 46.03 3.02
1438 1488 0.042431 AGGTCCTCCTCATGCTCTGT 59.958 55.000 0.00 0.00 40.58 3.41
1449 1499 3.006752 CAGAGCAATCATCTAGGTCCTCC 59.993 52.174 0.00 0.00 0.00 4.30
1909 1969 6.243148 TGAACTGTTTTCTCCCCCTAAATAC 58.757 40.000 0.00 0.00 0.00 1.89
1910 1970 6.457159 TGAACTGTTTTCTCCCCCTAAATA 57.543 37.500 0.00 0.00 0.00 1.40
2216 2276 3.864789 ACATCTCCAACCTGACAGTTT 57.135 42.857 0.93 0.00 0.00 2.66
2373 2434 3.000041 TGGATTTAGCACTACTGCAACG 59.000 45.455 0.00 0.00 46.97 4.10
3064 3127 9.252962 CATTGCTCTGTTTACTTGAATTCTTTT 57.747 29.630 7.05 0.00 0.00 2.27
3065 3128 7.383300 GCATTGCTCTGTTTACTTGAATTCTTT 59.617 33.333 7.05 0.00 0.00 2.52
3307 3370 2.639347 TGTCATCAGGACCACATTGAGT 59.361 45.455 0.00 0.00 46.38 3.41
3946 4011 4.922206 TCCTGGTCTCTTGCACATTTTAT 58.078 39.130 0.00 0.00 0.00 1.40
3959 4024 2.167487 CCTAGAAGTTGCTCCTGGTCTC 59.833 54.545 0.00 0.00 0.00 3.36
4348 4524 1.140452 TGTGCCAAATGTGTGCCAAAT 59.860 42.857 0.00 0.00 0.00 2.32
4349 4525 0.538584 TGTGCCAAATGTGTGCCAAA 59.461 45.000 0.00 0.00 0.00 3.28
4350 4526 0.179089 GTGTGCCAAATGTGTGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
4351 4527 1.325476 TGTGTGCCAAATGTGTGCCA 61.325 50.000 0.00 0.00 0.00 4.92
4352 4528 0.875474 GTGTGTGCCAAATGTGTGCC 60.875 55.000 0.00 0.00 0.00 5.01
4353 4529 0.875474 GGTGTGTGCCAAATGTGTGC 60.875 55.000 0.00 0.00 0.00 4.57
4354 4530 0.459078 TGGTGTGTGCCAAATGTGTG 59.541 50.000 0.00 0.00 35.25 3.82
4355 4531 1.136695 CTTGGTGTGTGCCAAATGTGT 59.863 47.619 0.00 0.00 46.59 3.72
4356 4532 1.136695 ACTTGGTGTGTGCCAAATGTG 59.863 47.619 0.00 0.00 46.59 3.21
4357 4533 1.408702 GACTTGGTGTGTGCCAAATGT 59.591 47.619 0.00 0.00 46.59 2.71
4358 4534 1.269726 GGACTTGGTGTGTGCCAAATG 60.270 52.381 0.00 0.00 46.59 2.32
4488 4722 4.696877 TCACAAGCACATATTCAAGACCAG 59.303 41.667 0.00 0.00 0.00 4.00
4519 4753 1.443802 GCTACCAGCTGAAGGTGAAC 58.556 55.000 17.39 0.00 45.66 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.