Multiple sequence alignment - TraesCS1D01G035000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G035000 chr1D 100.000 2403 0 0 1 2403 15518959 15521361 0.000000e+00 4438.0
1 TraesCS1D01G035000 chr1A 91.302 1621 94 25 818 2403 16038322 16039930 0.000000e+00 2169.0
2 TraesCS1D01G035000 chr1B 89.849 995 40 21 792 1755 21804371 21805335 0.000000e+00 1221.0
3 TraesCS1D01G035000 chr1B 86.233 523 54 10 1792 2300 21805332 21805850 3.490000e-153 551.0
4 TraesCS1D01G035000 chr1B 86.387 382 51 1 381 761 21590819 21591200 1.330000e-112 416.0
5 TraesCS1D01G035000 chr1B 93.137 102 4 2 2304 2403 21805969 21806069 1.920000e-31 147.0
6 TraesCS1D01G035000 chr1B 84.507 142 16 4 176 312 21590678 21590818 4.170000e-28 135.0
7 TraesCS1D01G035000 chr1B 95.918 49 2 0 1296 1344 37101448 37101496 1.980000e-11 80.5
8 TraesCS1D01G035000 chr5B 97.959 49 1 0 1296 1344 490335780 490335732 4.260000e-13 86.1
9 TraesCS1D01G035000 chr2B 95.918 49 2 0 1296 1344 397908482 397908434 1.980000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G035000 chr1D 15518959 15521361 2402 False 4438.000000 4438 100.000000 1 2403 1 chr1D.!!$F1 2402
1 TraesCS1D01G035000 chr1A 16038322 16039930 1608 False 2169.000000 2169 91.302000 818 2403 1 chr1A.!!$F1 1585
2 TraesCS1D01G035000 chr1B 21804371 21806069 1698 False 639.666667 1221 89.739667 792 2403 3 chr1B.!!$F3 1611
3 TraesCS1D01G035000 chr1B 21590678 21591200 522 False 275.500000 416 85.447000 176 761 2 chr1B.!!$F2 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 640 0.028902 GACCAACGAAACACCACTGC 59.971 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1604 0.587768 CAGCCGCAATCAATATCGCA 59.412 50.0 0.0 0.0 0.0 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.330063 TCGATATTTCATCAATAGAAAACAGCT 57.670 29.630 0.00 0.00 38.36 4.24
42 43 9.941664 CGATATTTCATCAATAGAAAACAGCTT 57.058 29.630 0.00 0.00 38.36 3.74
46 47 9.768662 ATTTCATCAATAGAAAACAGCTTTTGT 57.231 25.926 0.00 0.00 43.45 2.83
60 61 5.523552 ACAGCTTTTGTTTTTCTTGGTATGC 59.476 36.000 0.00 0.00 36.31 3.14
61 62 5.754890 CAGCTTTTGTTTTTCTTGGTATGCT 59.245 36.000 0.00 0.00 0.00 3.79
62 63 5.985530 AGCTTTTGTTTTTCTTGGTATGCTC 59.014 36.000 0.00 0.00 0.00 4.26
63 64 5.107875 GCTTTTGTTTTTCTTGGTATGCTCG 60.108 40.000 0.00 0.00 0.00 5.03
64 65 4.497473 TTGTTTTTCTTGGTATGCTCGG 57.503 40.909 0.00 0.00 0.00 4.63
65 66 3.745799 TGTTTTTCTTGGTATGCTCGGA 58.254 40.909 0.00 0.00 0.00 4.55
66 67 4.138290 TGTTTTTCTTGGTATGCTCGGAA 58.862 39.130 0.00 0.00 0.00 4.30
67 68 4.215399 TGTTTTTCTTGGTATGCTCGGAAG 59.785 41.667 0.00 0.00 0.00 3.46
101 102 3.495729 GGAGCAAAGGTCCCCTGA 58.504 61.111 3.93 0.00 43.62 3.86
102 103 2.002625 GGAGCAAAGGTCCCCTGAT 58.997 57.895 3.93 0.00 43.62 2.90
103 104 0.332972 GGAGCAAAGGTCCCCTGATT 59.667 55.000 3.93 0.00 43.62 2.57
104 105 1.683319 GGAGCAAAGGTCCCCTGATTC 60.683 57.143 3.93 0.00 43.62 2.52
105 106 1.004745 GAGCAAAGGTCCCCTGATTCA 59.995 52.381 0.00 0.00 32.13 2.57
106 107 1.428912 AGCAAAGGTCCCCTGATTCAA 59.571 47.619 0.00 0.00 32.13 2.69
107 108 2.158325 AGCAAAGGTCCCCTGATTCAAA 60.158 45.455 0.00 0.00 32.13 2.69
108 109 2.632512 GCAAAGGTCCCCTGATTCAAAA 59.367 45.455 0.00 0.00 32.13 2.44
109 110 3.261643 GCAAAGGTCCCCTGATTCAAAAT 59.738 43.478 0.00 0.00 32.13 1.82
110 111 4.263025 GCAAAGGTCCCCTGATTCAAAATT 60.263 41.667 0.00 0.00 32.13 1.82
111 112 5.046663 GCAAAGGTCCCCTGATTCAAAATTA 60.047 40.000 0.00 0.00 32.13 1.40
112 113 6.519891 GCAAAGGTCCCCTGATTCAAAATTAA 60.520 38.462 0.00 0.00 32.13 1.40
113 114 7.623630 CAAAGGTCCCCTGATTCAAAATTAAT 58.376 34.615 0.00 0.00 32.13 1.40
114 115 7.813087 AAGGTCCCCTGATTCAAAATTAATT 57.187 32.000 0.00 0.00 32.13 1.40
115 116 7.423844 AGGTCCCCTGATTCAAAATTAATTC 57.576 36.000 0.10 0.00 29.57 2.17
116 117 6.959366 AGGTCCCCTGATTCAAAATTAATTCA 59.041 34.615 0.10 0.00 29.57 2.57
117 118 7.124750 AGGTCCCCTGATTCAAAATTAATTCAG 59.875 37.037 0.10 3.60 29.57 3.02
118 119 7.267857 GTCCCCTGATTCAAAATTAATTCAGG 58.732 38.462 18.76 18.76 42.10 3.86
119 120 6.051074 CCCCTGATTCAAAATTAATTCAGGC 58.949 40.000 19.74 3.57 41.37 4.85
120 121 6.051074 CCCTGATTCAAAATTAATTCAGGCC 58.949 40.000 19.74 0.00 41.37 5.19
121 122 6.051074 CCTGATTCAAAATTAATTCAGGCCC 58.949 40.000 15.37 1.36 37.32 5.80
122 123 6.126968 CCTGATTCAAAATTAATTCAGGCCCT 60.127 38.462 15.37 0.00 37.32 5.19
123 124 7.256494 TGATTCAAAATTAATTCAGGCCCTT 57.744 32.000 0.00 0.00 0.00 3.95
124 125 7.688343 TGATTCAAAATTAATTCAGGCCCTTT 58.312 30.769 0.00 0.00 0.00 3.11
125 126 7.823799 TGATTCAAAATTAATTCAGGCCCTTTC 59.176 33.333 0.00 0.00 0.00 2.62
126 127 6.048732 TCAAAATTAATTCAGGCCCTTTCC 57.951 37.500 0.00 0.00 0.00 3.13
127 128 5.545723 TCAAAATTAATTCAGGCCCTTTCCA 59.454 36.000 0.00 0.00 0.00 3.53
128 129 5.682234 AAATTAATTCAGGCCCTTTCCAG 57.318 39.130 0.00 0.00 0.00 3.86
129 130 4.608170 ATTAATTCAGGCCCTTTCCAGA 57.392 40.909 0.00 0.00 0.00 3.86
130 131 4.608170 TTAATTCAGGCCCTTTCCAGAT 57.392 40.909 0.00 0.00 0.00 2.90
131 132 3.479866 AATTCAGGCCCTTTCCAGATT 57.520 42.857 0.00 0.00 0.00 2.40
132 133 2.514458 TTCAGGCCCTTTCCAGATTC 57.486 50.000 0.00 0.00 0.00 2.52
133 134 1.673767 TCAGGCCCTTTCCAGATTCT 58.326 50.000 0.00 0.00 0.00 2.40
134 135 2.845659 TCAGGCCCTTTCCAGATTCTA 58.154 47.619 0.00 0.00 0.00 2.10
135 136 3.189606 TCAGGCCCTTTCCAGATTCTAA 58.810 45.455 0.00 0.00 0.00 2.10
136 137 3.788142 TCAGGCCCTTTCCAGATTCTAAT 59.212 43.478 0.00 0.00 0.00 1.73
137 138 4.230502 TCAGGCCCTTTCCAGATTCTAATT 59.769 41.667 0.00 0.00 0.00 1.40
138 139 4.958581 CAGGCCCTTTCCAGATTCTAATTT 59.041 41.667 0.00 0.00 0.00 1.82
139 140 5.423290 CAGGCCCTTTCCAGATTCTAATTTT 59.577 40.000 0.00 0.00 0.00 1.82
140 141 5.658634 AGGCCCTTTCCAGATTCTAATTTTC 59.341 40.000 0.00 0.00 0.00 2.29
141 142 5.450550 GGCCCTTTCCAGATTCTAATTTTCG 60.451 44.000 0.00 0.00 0.00 3.46
142 143 5.125578 GCCCTTTCCAGATTCTAATTTTCGT 59.874 40.000 0.00 0.00 0.00 3.85
143 144 6.555315 CCCTTTCCAGATTCTAATTTTCGTG 58.445 40.000 0.00 0.00 0.00 4.35
144 145 6.151144 CCCTTTCCAGATTCTAATTTTCGTGT 59.849 38.462 0.00 0.00 0.00 4.49
145 146 7.023575 CCTTTCCAGATTCTAATTTTCGTGTG 58.976 38.462 0.00 0.00 0.00 3.82
146 147 7.308589 CCTTTCCAGATTCTAATTTTCGTGTGT 60.309 37.037 0.00 0.00 0.00 3.72
147 148 6.480524 TCCAGATTCTAATTTTCGTGTGTG 57.519 37.500 0.00 0.00 0.00 3.82
148 149 5.411361 TCCAGATTCTAATTTTCGTGTGTGG 59.589 40.000 0.00 0.00 0.00 4.17
149 150 5.411361 CCAGATTCTAATTTTCGTGTGTGGA 59.589 40.000 0.00 0.00 0.00 4.02
150 151 6.094048 CCAGATTCTAATTTTCGTGTGTGGAT 59.906 38.462 0.00 0.00 0.00 3.41
151 152 7.182761 CAGATTCTAATTTTCGTGTGTGGATC 58.817 38.462 0.00 0.00 0.00 3.36
152 153 6.878923 AGATTCTAATTTTCGTGTGTGGATCA 59.121 34.615 0.00 0.00 0.00 2.92
153 154 5.856126 TCTAATTTTCGTGTGTGGATCAC 57.144 39.130 0.00 0.00 46.31 3.06
154 155 5.547465 TCTAATTTTCGTGTGTGGATCACT 58.453 37.500 0.00 0.00 46.27 3.41
155 156 6.693466 TCTAATTTTCGTGTGTGGATCACTA 58.307 36.000 0.00 0.00 46.27 2.74
156 157 7.327975 TCTAATTTTCGTGTGTGGATCACTAT 58.672 34.615 0.00 0.00 46.27 2.12
157 158 6.817765 AATTTTCGTGTGTGGATCACTATT 57.182 33.333 0.00 0.00 46.27 1.73
158 159 5.856126 TTTTCGTGTGTGGATCACTATTC 57.144 39.130 0.00 0.00 46.27 1.75
159 160 4.529109 TTCGTGTGTGGATCACTATTCA 57.471 40.909 0.00 0.00 46.27 2.57
160 161 4.736126 TCGTGTGTGGATCACTATTCAT 57.264 40.909 0.00 0.00 46.27 2.57
161 162 5.084818 TCGTGTGTGGATCACTATTCATT 57.915 39.130 0.00 0.00 46.27 2.57
162 163 5.487433 TCGTGTGTGGATCACTATTCATTT 58.513 37.500 0.00 0.00 46.27 2.32
163 164 5.937540 TCGTGTGTGGATCACTATTCATTTT 59.062 36.000 0.00 0.00 46.27 1.82
164 165 6.092122 TCGTGTGTGGATCACTATTCATTTTC 59.908 38.462 0.00 0.00 46.27 2.29
165 166 6.128309 CGTGTGTGGATCACTATTCATTTTCA 60.128 38.462 0.00 0.00 46.27 2.69
166 167 7.572910 CGTGTGTGGATCACTATTCATTTTCAA 60.573 37.037 0.00 0.00 46.27 2.69
167 168 7.752239 GTGTGTGGATCACTATTCATTTTCAAG 59.248 37.037 0.00 0.00 46.27 3.02
168 169 6.749118 GTGTGGATCACTATTCATTTTCAAGC 59.251 38.462 0.00 0.00 43.13 4.01
169 170 6.433716 TGTGGATCACTATTCATTTTCAAGCA 59.566 34.615 0.00 0.00 35.11 3.91
170 171 6.749118 GTGGATCACTATTCATTTTCAAGCAC 59.251 38.462 0.00 0.00 0.00 4.40
171 172 6.660521 TGGATCACTATTCATTTTCAAGCACT 59.339 34.615 0.00 0.00 0.00 4.40
172 173 7.177216 TGGATCACTATTCATTTTCAAGCACTT 59.823 33.333 0.00 0.00 0.00 3.16
173 174 7.487189 GGATCACTATTCATTTTCAAGCACTTG 59.513 37.037 3.94 3.94 41.71 3.16
174 175 7.275888 TCACTATTCATTTTCAAGCACTTGT 57.724 32.000 10.05 0.00 41.16 3.16
189 190 7.600375 TCAAGCACTTGTACAAAAACATGAAAA 59.400 29.630 10.03 0.00 41.16 2.29
190 191 8.389603 CAAGCACTTGTACAAAAACATGAAAAT 58.610 29.630 10.03 0.00 35.92 1.82
193 194 7.125113 CACTTGTACAAAAACATGAAAATGCC 58.875 34.615 10.03 0.00 0.00 4.40
200 206 7.278875 ACAAAAACATGAAAATGCCTTCCTAA 58.721 30.769 0.00 0.00 0.00 2.69
208 214 0.548510 ATGCCTTCCTAAGCCCTCAC 59.451 55.000 0.00 0.00 0.00 3.51
221 227 0.884704 CCCTCACGTGTTTGGTCAGG 60.885 60.000 16.51 12.56 0.00 3.86
229 235 0.324738 TGTTTGGTCAGGTGGGCAAA 60.325 50.000 0.00 0.00 0.00 3.68
230 236 0.389025 GTTTGGTCAGGTGGGCAAAG 59.611 55.000 0.00 0.00 0.00 2.77
238 244 1.460699 GGTGGGCAAAGACCTCCTT 59.539 57.895 2.76 0.00 40.93 3.36
244 250 2.035961 GGGCAAAGACCTCCTTTTTGTC 59.964 50.000 0.00 0.00 42.13 3.18
250 256 1.164041 ACCTCCTTTTTGTCGTGCGG 61.164 55.000 0.00 0.00 0.00 5.69
289 295 2.290260 CCACAAGCACCTCCAAGTATCA 60.290 50.000 0.00 0.00 0.00 2.15
290 296 3.614092 CACAAGCACCTCCAAGTATCAT 58.386 45.455 0.00 0.00 0.00 2.45
291 297 3.376234 CACAAGCACCTCCAAGTATCATG 59.624 47.826 0.00 0.00 0.00 3.07
296 302 0.886490 CCTCCAAGTATCATGGCCGC 60.886 60.000 0.00 0.00 37.88 6.53
298 304 0.463654 TCCAAGTATCATGGCCGCAC 60.464 55.000 0.00 0.00 37.88 5.34
304 310 1.993701 TATCATGGCCGCACCCACAT 61.994 55.000 0.00 0.00 37.79 3.21
313 319 3.578456 CACCCACATCGGTGCTTC 58.422 61.111 0.00 0.00 46.52 3.86
314 320 2.047274 ACCCACATCGGTGCTTCG 60.047 61.111 0.00 0.00 43.88 3.79
315 321 2.047274 CCCACATCGGTGCTTCGT 60.047 61.111 0.00 0.00 43.88 3.85
316 322 1.216977 CCCACATCGGTGCTTCGTA 59.783 57.895 0.00 0.00 43.88 3.43
317 323 1.082117 CCCACATCGGTGCTTCGTAC 61.082 60.000 0.00 0.00 43.88 3.67
318 324 1.082117 CCACATCGGTGCTTCGTACC 61.082 60.000 0.00 0.00 43.88 3.34
319 325 1.082117 CACATCGGTGCTTCGTACCC 61.082 60.000 0.00 0.00 38.37 3.69
320 326 1.876714 CATCGGTGCTTCGTACCCG 60.877 63.158 0.10 0.10 34.84 5.28
321 327 2.345760 ATCGGTGCTTCGTACCCGT 61.346 57.895 5.99 0.00 34.84 5.28
322 328 2.275547 ATCGGTGCTTCGTACCCGTC 62.276 60.000 5.99 0.00 34.84 4.79
323 329 2.505557 GGTGCTTCGTACCCGTCG 60.506 66.667 0.00 0.00 32.14 5.12
324 330 2.505557 GTGCTTCGTACCCGTCGG 60.506 66.667 3.60 3.60 35.01 4.79
326 332 2.505557 GCTTCGTACCCGTCGGTG 60.506 66.667 11.06 4.33 44.40 4.94
327 333 2.505557 CTTCGTACCCGTCGGTGC 60.506 66.667 11.06 1.39 44.40 5.01
328 334 2.985282 TTCGTACCCGTCGGTGCT 60.985 61.111 11.06 0.00 44.40 4.40
329 335 3.271706 TTCGTACCCGTCGGTGCTG 62.272 63.158 11.06 0.00 44.40 4.41
330 336 4.789075 CGTACCCGTCGGTGCTGG 62.789 72.222 11.06 0.00 44.40 4.85
341 347 4.329545 GTGCTGGCCAGACCCGAA 62.330 66.667 37.21 10.59 37.83 4.30
342 348 3.565214 TGCTGGCCAGACCCGAAA 61.565 61.111 37.21 8.38 37.83 3.46
343 349 2.044946 GCTGGCCAGACCCGAAAT 60.045 61.111 37.21 0.00 37.83 2.17
344 350 2.409870 GCTGGCCAGACCCGAAATG 61.410 63.158 37.21 6.97 37.83 2.32
345 351 2.361104 TGGCCAGACCCGAAATGC 60.361 61.111 0.00 0.00 37.83 3.56
346 352 3.508840 GGCCAGACCCGAAATGCG 61.509 66.667 0.00 0.00 40.47 4.73
347 353 2.746277 GCCAGACCCGAAATGCGT 60.746 61.111 0.00 0.00 38.67 5.24
348 354 2.750888 GCCAGACCCGAAATGCGTC 61.751 63.158 0.00 0.00 38.67 5.19
349 355 2.452813 CCAGACCCGAAATGCGTCG 61.453 63.158 0.00 0.00 40.77 5.12
350 356 2.813908 AGACCCGAAATGCGTCGC 60.814 61.111 11.10 11.10 39.74 5.19
351 357 3.115892 GACCCGAAATGCGTCGCA 61.116 61.111 24.05 24.05 44.86 5.10
352 358 3.362851 GACCCGAAATGCGTCGCAC 62.363 63.158 24.34 9.28 43.04 5.34
353 359 4.499023 CCCGAAATGCGTCGCACG 62.499 66.667 24.34 20.87 43.04 5.34
354 360 3.474904 CCGAAATGCGTCGCACGA 61.475 61.111 24.34 0.00 46.05 4.35
355 361 2.275202 CGAAATGCGTCGCACGAC 60.275 61.111 24.34 14.78 46.05 4.34
356 362 2.716828 CGAAATGCGTCGCACGACT 61.717 57.895 24.34 3.10 46.05 4.18
357 363 1.225475 GAAATGCGTCGCACGACTG 60.225 57.895 24.34 14.17 46.05 3.51
358 364 3.295228 AAATGCGTCGCACGACTGC 62.295 57.895 24.34 23.25 46.05 4.40
363 369 4.961511 GTCGCACGACTGCCACCA 62.962 66.667 15.56 0.00 40.73 4.17
364 370 4.662961 TCGCACGACTGCCACCAG 62.663 66.667 0.00 0.00 44.80 4.00
379 385 2.069273 CACCAGTGGAGCTAACTTTCG 58.931 52.381 18.40 0.00 0.00 3.46
382 388 2.350522 CAGTGGAGCTAACTTTCGCAT 58.649 47.619 0.00 0.00 0.00 4.73
390 396 1.407721 TAACTTTCGCATCGTCGCCG 61.408 55.000 0.00 0.00 0.00 6.46
402 408 3.122323 TCGCCGAAAATGCCCGAC 61.122 61.111 0.00 0.00 0.00 4.79
410 416 2.767505 GAAAATGCCCGACGGAGATAT 58.232 47.619 17.49 0.76 0.00 1.63
414 420 0.467474 TGCCCGACGGAGATATGAGT 60.467 55.000 17.49 0.00 0.00 3.41
417 423 1.001268 CCCGACGGAGATATGAGTGTG 60.001 57.143 17.49 0.00 0.00 3.82
420 426 2.307768 GACGGAGATATGAGTGTGGGA 58.692 52.381 0.00 0.00 0.00 4.37
446 452 1.341209 GCCCCAAAGGAAGTCAAACAG 59.659 52.381 0.00 0.00 38.24 3.16
454 460 9.333750 CCCAAAGGAAGTCAAACAGATCTTGAC 62.334 44.444 15.39 15.39 43.36 3.18
462 468 2.907910 ACAGATCTTGACGCAAATGC 57.092 45.000 0.00 0.00 37.78 3.56
463 469 1.470098 ACAGATCTTGACGCAAATGCC 59.530 47.619 0.00 0.00 37.91 4.40
465 471 1.741706 AGATCTTGACGCAAATGCCTG 59.258 47.619 0.00 0.00 37.91 4.85
476 482 4.764771 ATGCCTGGGCGCAACCAT 62.765 61.111 10.83 7.41 43.24 3.55
501 507 1.740296 CTTCGCGATCAACCGGGTT 60.740 57.895 10.88 6.59 42.14 4.11
514 520 4.329545 GGGTTGCCGAGCAGGACA 62.330 66.667 2.12 0.00 45.00 4.02
515 521 3.050275 GGTTGCCGAGCAGGACAC 61.050 66.667 2.12 0.00 45.00 3.67
516 522 3.050275 GTTGCCGAGCAGGACACC 61.050 66.667 2.12 0.00 45.00 4.16
517 523 3.241530 TTGCCGAGCAGGACACCT 61.242 61.111 2.12 0.00 45.00 4.00
518 524 2.818169 TTGCCGAGCAGGACACCTT 61.818 57.895 2.12 0.00 45.00 3.50
519 525 2.032681 GCCGAGCAGGACACCTTT 59.967 61.111 2.12 0.00 45.00 3.11
520 526 2.328099 GCCGAGCAGGACACCTTTG 61.328 63.158 2.12 0.00 45.00 2.77
521 527 1.672356 CCGAGCAGGACACCTTTGG 60.672 63.158 0.00 0.00 45.00 3.28
522 528 2.328099 CGAGCAGGACACCTTTGGC 61.328 63.158 0.00 0.00 0.00 4.52
523 529 1.228245 GAGCAGGACACCTTTGGCA 60.228 57.895 0.00 0.00 28.57 4.92
524 530 1.518903 GAGCAGGACACCTTTGGCAC 61.519 60.000 0.00 0.00 28.57 5.01
525 531 2.908073 GCAGGACACCTTTGGCACG 61.908 63.158 0.00 0.00 28.57 5.34
526 532 1.525995 CAGGACACCTTTGGCACGT 60.526 57.895 0.00 0.00 28.57 4.49
527 533 1.101049 CAGGACACCTTTGGCACGTT 61.101 55.000 0.00 0.00 28.57 3.99
528 534 0.395173 AGGACACCTTTGGCACGTTT 60.395 50.000 0.00 0.00 28.57 3.60
529 535 1.134037 AGGACACCTTTGGCACGTTTA 60.134 47.619 0.00 0.00 28.57 2.01
530 536 1.002142 GGACACCTTTGGCACGTTTAC 60.002 52.381 0.00 0.00 28.57 2.01
531 537 0.658897 ACACCTTTGGCACGTTTACG 59.341 50.000 0.00 0.00 46.33 3.18
532 538 0.659123 CACCTTTGGCACGTTTACGC 60.659 55.000 1.60 0.00 44.43 4.42
537 543 4.125097 GGCACGTTTACGCCGTCG 62.125 66.667 0.00 0.00 44.43 5.12
538 544 3.098958 GCACGTTTACGCCGTCGA 61.099 61.111 3.77 0.00 44.43 4.20
539 545 2.758840 CACGTTTACGCCGTCGAC 59.241 61.111 5.18 5.18 44.43 4.20
540 546 2.010286 CACGTTTACGCCGTCGACA 61.010 57.895 17.16 0.00 44.43 4.35
541 547 1.299014 ACGTTTACGCCGTCGACAA 60.299 52.632 17.16 0.00 44.43 3.18
542 548 1.126438 CGTTTACGCCGTCGACAAC 59.874 57.895 17.16 10.00 39.41 3.32
552 558 0.708370 CGTCGACAACGTCTTCATGG 59.292 55.000 17.16 0.00 46.42 3.66
553 559 0.438830 GTCGACAACGTCTTCATGGC 59.561 55.000 11.55 0.00 40.69 4.40
554 560 0.669318 TCGACAACGTCTTCATGGCC 60.669 55.000 0.00 0.00 40.69 5.36
555 561 1.635663 CGACAACGTCTTCATGGCCC 61.636 60.000 0.00 0.00 34.56 5.80
556 562 1.303317 ACAACGTCTTCATGGCCCC 60.303 57.895 0.00 0.00 0.00 5.80
557 563 2.046314 AACGTCTTCATGGCCCCG 60.046 61.111 0.00 0.00 0.00 5.73
558 564 4.778143 ACGTCTTCATGGCCCCGC 62.778 66.667 0.00 0.00 0.00 6.13
580 586 4.224715 CGAAGGTCGTATAAGCAGATCA 57.775 45.455 0.00 0.00 34.72 2.92
581 587 4.799678 CGAAGGTCGTATAAGCAGATCAT 58.200 43.478 0.00 0.00 34.72 2.45
582 588 4.854291 CGAAGGTCGTATAAGCAGATCATC 59.146 45.833 0.00 0.00 34.72 2.92
583 589 4.427096 AGGTCGTATAAGCAGATCATCG 57.573 45.455 0.00 0.00 0.00 3.84
584 590 2.917971 GGTCGTATAAGCAGATCATCGC 59.082 50.000 0.00 0.00 0.00 4.58
585 591 3.366476 GGTCGTATAAGCAGATCATCGCT 60.366 47.826 0.00 0.00 41.20 4.93
587 593 4.681942 GTCGTATAAGCAGATCATCGCTTT 59.318 41.667 17.86 10.75 46.04 3.51
588 594 4.681483 TCGTATAAGCAGATCATCGCTTTG 59.319 41.667 17.86 9.17 46.04 2.77
589 595 3.892918 ATAAGCAGATCATCGCTTTGC 57.107 42.857 17.86 7.41 46.04 3.68
590 596 0.737219 AAGCAGATCATCGCTTTGCC 59.263 50.000 9.94 0.00 46.04 4.52
591 597 1.010350 GCAGATCATCGCTTTGCCG 60.010 57.895 0.00 0.00 0.00 5.69
592 598 1.010350 CAGATCATCGCTTTGCCGC 60.010 57.895 0.00 0.00 0.00 6.53
593 599 2.182842 AGATCATCGCTTTGCCGCC 61.183 57.895 0.00 0.00 0.00 6.13
594 600 2.124570 ATCATCGCTTTGCCGCCT 60.125 55.556 0.00 0.00 0.00 5.52
595 601 0.880278 GATCATCGCTTTGCCGCCTA 60.880 55.000 0.00 0.00 0.00 3.93
596 602 0.882042 ATCATCGCTTTGCCGCCTAG 60.882 55.000 0.00 0.00 0.00 3.02
597 603 2.203070 ATCGCTTTGCCGCCTAGG 60.203 61.111 3.67 3.67 44.97 3.02
614 620 2.746277 GCCTTGCCGACGGAACAT 60.746 61.111 20.50 0.00 0.00 2.71
615 621 3.039202 GCCTTGCCGACGGAACATG 62.039 63.158 20.50 9.09 0.00 3.21
616 622 1.375396 CCTTGCCGACGGAACATGA 60.375 57.895 20.50 0.00 0.00 3.07
617 623 1.635663 CCTTGCCGACGGAACATGAC 61.636 60.000 20.50 0.00 0.00 3.06
618 624 1.635663 CTTGCCGACGGAACATGACC 61.636 60.000 20.50 1.31 0.00 4.02
619 625 2.047655 GCCGACGGAACATGACCA 60.048 61.111 20.50 0.00 0.00 4.02
620 626 1.669760 GCCGACGGAACATGACCAA 60.670 57.895 20.50 0.00 0.00 3.67
621 627 1.908066 GCCGACGGAACATGACCAAC 61.908 60.000 20.50 0.00 0.00 3.77
622 628 1.623081 CCGACGGAACATGACCAACG 61.623 60.000 8.64 10.29 0.00 4.10
623 629 0.665068 CGACGGAACATGACCAACGA 60.665 55.000 0.00 0.00 0.00 3.85
624 630 1.504359 GACGGAACATGACCAACGAA 58.496 50.000 0.00 0.00 0.00 3.85
625 631 1.868498 GACGGAACATGACCAACGAAA 59.132 47.619 0.00 0.00 0.00 3.46
626 632 1.600485 ACGGAACATGACCAACGAAAC 59.400 47.619 0.00 0.00 0.00 2.78
627 633 1.600013 CGGAACATGACCAACGAAACA 59.400 47.619 0.00 0.00 0.00 2.83
628 634 2.601266 CGGAACATGACCAACGAAACAC 60.601 50.000 0.00 0.00 0.00 3.32
629 635 2.287368 GGAACATGACCAACGAAACACC 60.287 50.000 0.00 0.00 0.00 4.16
630 636 2.045561 ACATGACCAACGAAACACCA 57.954 45.000 0.00 0.00 0.00 4.17
631 637 1.673920 ACATGACCAACGAAACACCAC 59.326 47.619 0.00 0.00 0.00 4.16
632 638 1.946768 CATGACCAACGAAACACCACT 59.053 47.619 0.00 0.00 0.00 4.00
633 639 1.374560 TGACCAACGAAACACCACTG 58.625 50.000 0.00 0.00 0.00 3.66
634 640 0.028902 GACCAACGAAACACCACTGC 59.971 55.000 0.00 0.00 0.00 4.40
635 641 0.678366 ACCAACGAAACACCACTGCA 60.678 50.000 0.00 0.00 0.00 4.41
636 642 0.029300 CCAACGAAACACCACTGCAG 59.971 55.000 13.48 13.48 0.00 4.41
637 643 0.732571 CAACGAAACACCACTGCAGT 59.267 50.000 15.25 15.25 0.00 4.40
638 644 1.014352 AACGAAACACCACTGCAGTC 58.986 50.000 18.64 2.53 0.00 3.51
639 645 0.814010 ACGAAACACCACTGCAGTCC 60.814 55.000 18.64 0.00 0.00 3.85
640 646 1.507141 CGAAACACCACTGCAGTCCC 61.507 60.000 18.64 0.23 0.00 4.46
641 647 0.465460 GAAACACCACTGCAGTCCCA 60.465 55.000 18.64 0.00 0.00 4.37
642 648 0.751643 AAACACCACTGCAGTCCCAC 60.752 55.000 18.64 0.00 0.00 4.61
643 649 2.666190 CACCACTGCAGTCCCACG 60.666 66.667 18.64 5.14 0.00 4.94
644 650 4.626081 ACCACTGCAGTCCCACGC 62.626 66.667 18.64 0.00 0.00 5.34
653 659 4.778143 GTCCCACGCGCCTTGGAT 62.778 66.667 21.59 0.00 36.02 3.41
654 660 4.467084 TCCCACGCGCCTTGGATC 62.467 66.667 21.59 0.00 36.02 3.36
655 661 4.776322 CCCACGCGCCTTGGATCA 62.776 66.667 21.59 0.00 36.02 2.92
656 662 2.514592 CCACGCGCCTTGGATCAT 60.515 61.111 16.17 0.00 36.02 2.45
657 663 2.711311 CACGCGCCTTGGATCATG 59.289 61.111 5.73 0.00 0.00 3.07
658 664 2.108514 CACGCGCCTTGGATCATGT 61.109 57.895 5.73 0.00 0.00 3.21
659 665 1.815421 ACGCGCCTTGGATCATGTC 60.815 57.895 5.73 0.00 0.00 3.06
660 666 2.874694 CGCGCCTTGGATCATGTCG 61.875 63.158 0.00 0.00 0.00 4.35
661 667 2.537560 GCGCCTTGGATCATGTCGG 61.538 63.158 0.00 0.00 0.00 4.79
662 668 1.153369 CGCCTTGGATCATGTCGGT 60.153 57.895 0.00 0.00 0.00 4.69
663 669 0.104120 CGCCTTGGATCATGTCGGTA 59.896 55.000 0.00 0.00 0.00 4.02
664 670 1.869754 CGCCTTGGATCATGTCGGTAG 60.870 57.143 0.00 0.00 0.00 3.18
665 671 1.412710 GCCTTGGATCATGTCGGTAGA 59.587 52.381 0.00 0.00 0.00 2.59
666 672 2.546795 GCCTTGGATCATGTCGGTAGAG 60.547 54.545 0.00 0.00 0.00 2.43
667 673 2.546795 CCTTGGATCATGTCGGTAGAGC 60.547 54.545 0.00 0.00 0.00 4.09
668 674 0.668535 TGGATCATGTCGGTAGAGCG 59.331 55.000 0.00 0.00 0.00 5.03
669 675 0.664767 GGATCATGTCGGTAGAGCGC 60.665 60.000 0.00 0.00 0.00 5.92
670 676 0.664767 GATCATGTCGGTAGAGCGCC 60.665 60.000 2.29 0.00 0.00 6.53
677 683 4.814294 GGTAGAGCGCCGGTGTGG 62.814 72.222 17.91 0.00 42.50 4.17
678 684 4.065281 GTAGAGCGCCGGTGTGGT 62.065 66.667 17.91 5.84 41.21 4.16
684 690 4.386951 CGCCGGTGTGGTGGATCA 62.387 66.667 6.91 0.00 44.97 2.92
685 691 2.746277 GCCGGTGTGGTGGATCAC 60.746 66.667 1.90 0.00 41.21 3.06
686 692 2.747022 CCGGTGTGGTGGATCACA 59.253 61.111 0.00 0.00 44.36 3.58
695 701 2.048597 TGGATCACACACCGTCGC 60.049 61.111 0.00 0.00 0.00 5.19
696 702 2.261671 GGATCACACACCGTCGCT 59.738 61.111 0.00 0.00 0.00 4.93
697 703 1.805945 GGATCACACACCGTCGCTC 60.806 63.158 0.00 0.00 0.00 5.03
698 704 1.805945 GATCACACACCGTCGCTCC 60.806 63.158 0.00 0.00 0.00 4.70
699 705 3.296709 ATCACACACCGTCGCTCCC 62.297 63.158 0.00 0.00 0.00 4.30
700 706 4.293648 CACACACCGTCGCTCCCA 62.294 66.667 0.00 0.00 0.00 4.37
701 707 3.311110 ACACACCGTCGCTCCCAT 61.311 61.111 0.00 0.00 0.00 4.00
702 708 2.509336 CACACCGTCGCTCCCATC 60.509 66.667 0.00 0.00 0.00 3.51
703 709 4.129737 ACACCGTCGCTCCCATCG 62.130 66.667 0.00 0.00 0.00 3.84
704 710 4.873129 CACCGTCGCTCCCATCGG 62.873 72.222 0.00 0.00 46.98 4.18
706 712 4.873129 CCGTCGCTCCCATCGGTG 62.873 72.222 0.00 0.00 38.45 4.94
707 713 4.873129 CGTCGCTCCCATCGGTGG 62.873 72.222 8.08 8.08 45.61 4.61
708 714 3.771160 GTCGCTCCCATCGGTGGT 61.771 66.667 15.03 0.00 44.48 4.16
709 715 3.458163 TCGCTCCCATCGGTGGTC 61.458 66.667 15.03 1.19 44.48 4.02
710 716 4.530857 CGCTCCCATCGGTGGTCC 62.531 72.222 15.03 0.00 44.48 4.46
720 726 4.408821 GGTGGTCCGGCATGAGCA 62.409 66.667 0.00 2.84 44.61 4.26
722 728 4.408821 TGGTCCGGCATGAGCACC 62.409 66.667 0.00 0.00 44.61 5.01
724 730 4.408821 GTCCGGCATGAGCACCCA 62.409 66.667 0.00 0.00 44.61 4.51
725 731 4.408821 TCCGGCATGAGCACCCAC 62.409 66.667 0.00 0.00 44.61 4.61
726 732 4.720902 CCGGCATGAGCACCCACA 62.721 66.667 0.00 0.00 44.61 4.17
727 733 3.129502 CGGCATGAGCACCCACAG 61.130 66.667 0.00 0.00 44.61 3.66
728 734 2.352422 GGCATGAGCACCCACAGA 59.648 61.111 0.00 0.00 44.61 3.41
729 735 1.748122 GGCATGAGCACCCACAGAG 60.748 63.158 0.00 0.00 44.61 3.35
730 736 2.404995 GCATGAGCACCCACAGAGC 61.405 63.158 0.00 0.00 41.58 4.09
731 737 2.104859 CATGAGCACCCACAGAGCG 61.105 63.158 0.00 0.00 0.00 5.03
732 738 3.320879 ATGAGCACCCACAGAGCGG 62.321 63.158 0.00 0.00 0.00 5.52
743 749 4.124943 AGAGCGGCCCGAGGACTA 62.125 66.667 7.68 0.00 0.00 2.59
744 750 3.597728 GAGCGGCCCGAGGACTAG 61.598 72.222 7.68 0.00 0.00 2.57
745 751 4.444081 AGCGGCCCGAGGACTAGT 62.444 66.667 7.68 0.00 0.00 2.57
746 752 4.208686 GCGGCCCGAGGACTAGTG 62.209 72.222 7.68 0.00 0.00 2.74
747 753 2.754658 CGGCCCGAGGACTAGTGT 60.755 66.667 0.00 0.00 0.00 3.55
748 754 1.452651 CGGCCCGAGGACTAGTGTA 60.453 63.158 0.00 0.00 0.00 2.90
749 755 1.445716 CGGCCCGAGGACTAGTGTAG 61.446 65.000 0.00 0.00 0.00 2.74
750 756 1.734748 GCCCGAGGACTAGTGTAGC 59.265 63.158 0.00 0.00 0.00 3.58
751 757 1.736365 GCCCGAGGACTAGTGTAGCC 61.736 65.000 0.00 0.00 0.00 3.93
752 758 0.395311 CCCGAGGACTAGTGTAGCCA 60.395 60.000 0.00 0.00 0.00 4.75
753 759 0.739561 CCGAGGACTAGTGTAGCCAC 59.260 60.000 0.00 0.00 42.17 5.01
754 760 0.377554 CGAGGACTAGTGTAGCCACG 59.622 60.000 0.00 1.58 46.56 4.94
755 761 0.100861 GAGGACTAGTGTAGCCACGC 59.899 60.000 0.00 0.00 46.56 5.34
756 762 0.323542 AGGACTAGTGTAGCCACGCT 60.324 55.000 0.00 3.34 46.56 5.07
757 763 1.064906 AGGACTAGTGTAGCCACGCTA 60.065 52.381 0.00 5.45 46.56 4.26
758 764 1.747355 GGACTAGTGTAGCCACGCTAA 59.253 52.381 0.00 0.00 44.90 3.09
759 765 2.479219 GGACTAGTGTAGCCACGCTAAC 60.479 54.545 0.00 4.58 44.90 2.34
760 766 1.475682 ACTAGTGTAGCCACGCTAACC 59.524 52.381 7.00 0.00 44.90 2.85
761 767 0.452987 TAGTGTAGCCACGCTAACCG 59.547 55.000 2.92 0.00 46.56 4.44
762 768 2.125832 TGTAGCCACGCTAACCGC 60.126 61.111 0.00 0.00 43.07 5.68
763 769 2.183555 GTAGCCACGCTAACCGCT 59.816 61.111 0.00 0.00 43.07 5.52
764 770 1.447314 GTAGCCACGCTAACCGCTT 60.447 57.895 0.00 0.00 43.07 4.68
765 771 1.153706 TAGCCACGCTAACCGCTTC 60.154 57.895 0.00 0.00 38.27 3.86
766 772 1.879737 TAGCCACGCTAACCGCTTCA 61.880 55.000 0.00 0.00 38.27 3.02
767 773 2.322081 GCCACGCTAACCGCTTCAA 61.322 57.895 0.00 0.00 41.76 2.69
768 774 1.644786 GCCACGCTAACCGCTTCAAT 61.645 55.000 0.00 0.00 41.76 2.57
769 775 0.373716 CCACGCTAACCGCTTCAATC 59.626 55.000 0.00 0.00 41.76 2.67
770 776 0.373716 CACGCTAACCGCTTCAATCC 59.626 55.000 0.00 0.00 41.76 3.01
771 777 0.036765 ACGCTAACCGCTTCAATCCA 60.037 50.000 0.00 0.00 41.76 3.41
772 778 0.373716 CGCTAACCGCTTCAATCCAC 59.626 55.000 0.00 0.00 36.13 4.02
773 779 0.373716 GCTAACCGCTTCAATCCACG 59.626 55.000 0.00 0.00 35.14 4.94
776 782 4.924019 CCGCTTCAATCCACGGTA 57.076 55.556 0.00 0.00 40.77 4.02
777 783 3.379650 CCGCTTCAATCCACGGTAT 57.620 52.632 0.00 0.00 40.77 2.73
778 784 1.217882 CCGCTTCAATCCACGGTATC 58.782 55.000 0.00 0.00 40.77 2.24
779 785 1.202533 CCGCTTCAATCCACGGTATCT 60.203 52.381 0.00 0.00 40.77 1.98
780 786 2.035449 CCGCTTCAATCCACGGTATCTA 59.965 50.000 0.00 0.00 40.77 1.98
781 787 3.309388 CGCTTCAATCCACGGTATCTAG 58.691 50.000 0.00 0.00 0.00 2.43
782 788 3.654414 GCTTCAATCCACGGTATCTAGG 58.346 50.000 0.00 0.00 0.00 3.02
783 789 3.321111 GCTTCAATCCACGGTATCTAGGA 59.679 47.826 0.00 0.00 34.12 2.94
784 790 4.202223 GCTTCAATCCACGGTATCTAGGAA 60.202 45.833 0.00 0.00 33.17 3.36
785 791 5.531122 TTCAATCCACGGTATCTAGGAAG 57.469 43.478 0.00 0.00 33.17 3.46
786 792 3.895656 TCAATCCACGGTATCTAGGAAGG 59.104 47.826 0.00 0.00 33.17 3.46
787 793 3.614568 ATCCACGGTATCTAGGAAGGT 57.385 47.619 0.00 0.00 33.17 3.50
788 794 2.662866 TCCACGGTATCTAGGAAGGTG 58.337 52.381 0.00 0.00 0.00 4.00
789 795 1.687123 CCACGGTATCTAGGAAGGTGG 59.313 57.143 6.53 6.53 37.69 4.61
790 796 2.662866 CACGGTATCTAGGAAGGTGGA 58.337 52.381 0.00 0.00 0.00 4.02
799 805 0.419459 AGGAAGGTGGAGGAGGTGAT 59.581 55.000 0.00 0.00 0.00 3.06
805 811 2.359169 TGGAGGAGGTGATGTCGCC 61.359 63.158 4.43 4.43 46.57 5.54
813 819 0.247736 GGTGATGTCGCCTCTCAACT 59.752 55.000 5.37 0.00 43.02 3.16
814 820 1.354040 GTGATGTCGCCTCTCAACTG 58.646 55.000 0.00 0.00 0.00 3.16
815 821 0.247460 TGATGTCGCCTCTCAACTGG 59.753 55.000 0.00 0.00 0.00 4.00
816 822 1.078848 ATGTCGCCTCTCAACTGGC 60.079 57.895 0.00 0.00 45.25 4.85
839 845 0.609662 GCCGTAACTGGGGTAACAGA 59.390 55.000 0.00 0.00 40.97 3.41
882 888 9.609346 TGTAATGTCTTCTAAGCCCTTTTATAC 57.391 33.333 0.00 0.00 0.00 1.47
1135 1166 4.505970 CCTCTCCCCCTCCCCCTG 62.506 77.778 0.00 0.00 0.00 4.45
1181 1212 2.067365 TAGCTCCTCTAATGGCGTCA 57.933 50.000 0.00 0.00 0.00 4.35
1430 1467 4.767255 CCTGCGCTCCACTCCACC 62.767 72.222 9.73 0.00 0.00 4.61
1431 1468 4.767255 CTGCGCTCCACTCCACCC 62.767 72.222 9.73 0.00 0.00 4.61
1510 1551 0.460811 TAGCGCTTGTGATGCCTGAG 60.461 55.000 18.68 0.00 0.00 3.35
1514 1555 1.654317 GCTTGTGATGCCTGAGAGAG 58.346 55.000 0.00 0.00 0.00 3.20
1521 1562 1.136695 GATGCCTGAGAGAGACACCAG 59.863 57.143 0.00 0.00 0.00 4.00
1563 1604 4.848357 ACCACGGATTCTGAATTTCTGAT 58.152 39.130 4.11 0.00 0.00 2.90
1564 1605 4.637534 ACCACGGATTCTGAATTTCTGATG 59.362 41.667 4.11 2.84 0.00 3.07
1567 1608 3.557185 CGGATTCTGAATTTCTGATGCGA 59.443 43.478 4.11 2.62 0.00 5.10
1568 1609 4.212847 CGGATTCTGAATTTCTGATGCGAT 59.787 41.667 4.11 6.10 0.00 4.58
1610 1663 0.601576 CACACCACGGATTCGGAACA 60.602 55.000 0.00 0.00 41.39 3.18
1654 1707 5.355596 TGGTTTCCATGCTTTACAAACTTG 58.644 37.500 0.00 0.00 0.00 3.16
1706 1759 5.775686 TGCATTTCCTTGTCTGATTGAAAG 58.224 37.500 0.00 0.00 0.00 2.62
1713 1766 4.543692 CTTGTCTGATTGAAAGCTGTTGG 58.456 43.478 0.00 0.00 0.00 3.77
1730 1783 3.004210 TGTTGGTTCCATGTGTCAATTCG 59.996 43.478 0.00 0.00 0.00 3.34
1739 1792 4.439153 CCATGTGTCAATTCGGAATTCAGG 60.439 45.833 12.86 9.57 0.00 3.86
1745 1799 4.396166 GTCAATTCGGAATTCAGGATGTGT 59.604 41.667 12.86 0.00 37.40 3.72
1751 1805 5.928976 TCGGAATTCAGGATGTGTATTGAT 58.071 37.500 7.93 0.00 37.40 2.57
1753 1807 5.561532 CGGAATTCAGGATGTGTATTGATGC 60.562 44.000 7.93 0.00 37.40 3.91
1793 1848 3.380637 GCCATTCATGCTTCATTCTCTGT 59.619 43.478 0.00 0.00 0.00 3.41
1799 1854 8.833493 CATTCATGCTTCATTCTCTGTATACAA 58.167 33.333 7.06 0.00 0.00 2.41
1899 1959 3.517100 AGCTTGTCTAGATTCAGCTTCCA 59.483 43.478 14.47 0.00 0.00 3.53
1902 1962 5.486526 CTTGTCTAGATTCAGCTTCCACTT 58.513 41.667 0.00 0.00 0.00 3.16
1904 1964 4.081420 TGTCTAGATTCAGCTTCCACTTCC 60.081 45.833 0.00 0.00 0.00 3.46
1910 1970 3.297134 TCAGCTTCCACTTCCAAAGTT 57.703 42.857 0.00 0.00 40.46 2.66
1948 2008 5.625197 GCCTGTCATATGCCAAACTTGAATT 60.625 40.000 0.00 0.00 0.00 2.17
1952 2012 6.211184 TGTCATATGCCAAACTTGAATTTCCT 59.789 34.615 0.00 0.00 0.00 3.36
1955 2015 3.465871 TGCCAAACTTGAATTTCCTTGC 58.534 40.909 0.00 0.00 0.00 4.01
2007 2072 4.141597 TGGGTCAACAACTCAACATCACTA 60.142 41.667 0.00 0.00 34.61 2.74
2016 2081 6.767902 ACAACTCAACATCACTACAATCAAGT 59.232 34.615 0.00 0.00 0.00 3.16
2072 2144 9.003658 CAACCAGTACTCAACTCTGAATTTATT 57.996 33.333 0.00 0.00 35.76 1.40
2108 2180 6.204495 GCCTCAAATGATAGGATCTGAACTTC 59.796 42.308 0.00 0.00 34.58 3.01
2149 2221 5.972327 AGAGAAACTTCAGATGATGGGAT 57.028 39.130 1.41 0.00 0.00 3.85
2221 2293 5.357878 GCAAAGGACAAATGGATCTGATGTA 59.642 40.000 0.00 0.00 0.00 2.29
2236 2308 9.125026 GGATCTGATGTAAATACAACCAAGATT 57.875 33.333 0.00 0.00 39.99 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.330063 AGCTGTTTTCTATTGATGAAATATCGA 57.670 29.630 0.00 0.00 34.04 3.59
16 17 9.941664 AAGCTGTTTTCTATTGATGAAATATCG 57.058 29.630 0.00 0.00 34.04 2.92
20 21 9.768662 ACAAAAGCTGTTTTCTATTGATGAAAT 57.231 25.926 0.00 0.00 32.99 2.17
21 22 9.598517 AACAAAAGCTGTTTTCTATTGATGAAA 57.401 25.926 0.00 0.00 46.49 2.69
36 37 5.523552 GCATACCAAGAAAAACAAAAGCTGT 59.476 36.000 0.00 0.00 41.27 4.40
37 38 5.754890 AGCATACCAAGAAAAACAAAAGCTG 59.245 36.000 0.00 0.00 0.00 4.24
38 39 5.917462 AGCATACCAAGAAAAACAAAAGCT 58.083 33.333 0.00 0.00 0.00 3.74
39 40 5.107875 CGAGCATACCAAGAAAAACAAAAGC 60.108 40.000 0.00 0.00 0.00 3.51
40 41 5.402270 CCGAGCATACCAAGAAAAACAAAAG 59.598 40.000 0.00 0.00 0.00 2.27
41 42 5.067936 TCCGAGCATACCAAGAAAAACAAAA 59.932 36.000 0.00 0.00 0.00 2.44
42 43 4.580995 TCCGAGCATACCAAGAAAAACAAA 59.419 37.500 0.00 0.00 0.00 2.83
43 44 4.138290 TCCGAGCATACCAAGAAAAACAA 58.862 39.130 0.00 0.00 0.00 2.83
44 45 3.745799 TCCGAGCATACCAAGAAAAACA 58.254 40.909 0.00 0.00 0.00 2.83
45 46 4.723248 CTTCCGAGCATACCAAGAAAAAC 58.277 43.478 0.00 0.00 0.00 2.43
77 78 1.889170 GGGACCTTTGCTCCTTGAAAG 59.111 52.381 0.00 0.00 0.00 2.62
78 79 1.995376 GGGACCTTTGCTCCTTGAAA 58.005 50.000 0.00 0.00 0.00 2.69
79 80 3.745723 GGGACCTTTGCTCCTTGAA 57.254 52.632 0.00 0.00 0.00 2.69
93 94 7.267857 CCTGAATTAATTTTGAATCAGGGGAC 58.732 38.462 18.23 0.00 39.64 4.46
94 95 6.127083 GCCTGAATTAATTTTGAATCAGGGGA 60.127 38.462 23.67 0.00 42.54 4.81
95 96 6.051074 GCCTGAATTAATTTTGAATCAGGGG 58.949 40.000 23.67 9.00 42.54 4.79
96 97 6.051074 GGCCTGAATTAATTTTGAATCAGGG 58.949 40.000 23.67 12.00 42.54 4.45
97 98 6.051074 GGGCCTGAATTAATTTTGAATCAGG 58.949 40.000 20.41 20.41 44.42 3.86
98 99 6.881570 AGGGCCTGAATTAATTTTGAATCAG 58.118 36.000 4.50 4.09 0.00 2.90
99 100 6.872585 AGGGCCTGAATTAATTTTGAATCA 57.127 33.333 4.50 0.00 0.00 2.57
100 101 7.280876 GGAAAGGGCCTGAATTAATTTTGAATC 59.719 37.037 6.92 0.00 0.00 2.52
101 102 7.112122 GGAAAGGGCCTGAATTAATTTTGAAT 58.888 34.615 6.92 0.00 0.00 2.57
102 103 6.043706 TGGAAAGGGCCTGAATTAATTTTGAA 59.956 34.615 6.92 0.00 0.00 2.69
103 104 5.545723 TGGAAAGGGCCTGAATTAATTTTGA 59.454 36.000 6.92 0.00 0.00 2.69
104 105 5.803552 TGGAAAGGGCCTGAATTAATTTTG 58.196 37.500 6.92 0.00 0.00 2.44
105 106 5.784906 TCTGGAAAGGGCCTGAATTAATTTT 59.215 36.000 6.92 0.00 33.60 1.82
106 107 5.341169 TCTGGAAAGGGCCTGAATTAATTT 58.659 37.500 6.92 0.00 33.60 1.82
107 108 4.946646 TCTGGAAAGGGCCTGAATTAATT 58.053 39.130 6.92 0.00 33.60 1.40
108 109 4.608170 TCTGGAAAGGGCCTGAATTAAT 57.392 40.909 6.92 0.00 33.60 1.40
109 110 4.608170 ATCTGGAAAGGGCCTGAATTAA 57.392 40.909 6.92 0.00 39.02 1.40
110 111 4.230502 AGAATCTGGAAAGGGCCTGAATTA 59.769 41.667 6.92 0.00 39.02 1.40
111 112 3.012161 AGAATCTGGAAAGGGCCTGAATT 59.988 43.478 6.92 0.00 39.02 2.17
112 113 2.584498 AGAATCTGGAAAGGGCCTGAAT 59.416 45.455 6.92 0.00 39.02 2.57
113 114 1.995542 AGAATCTGGAAAGGGCCTGAA 59.004 47.619 6.92 0.00 39.02 3.02
114 115 1.673767 AGAATCTGGAAAGGGCCTGA 58.326 50.000 6.92 0.00 39.72 3.86
115 116 3.652057 TTAGAATCTGGAAAGGGCCTG 57.348 47.619 6.92 0.00 0.00 4.85
116 117 4.888626 AATTAGAATCTGGAAAGGGCCT 57.111 40.909 0.00 0.00 0.00 5.19
117 118 5.450550 CGAAAATTAGAATCTGGAAAGGGCC 60.451 44.000 0.00 0.00 0.00 5.80
118 119 5.125578 ACGAAAATTAGAATCTGGAAAGGGC 59.874 40.000 0.00 0.00 0.00 5.19
119 120 6.151144 ACACGAAAATTAGAATCTGGAAAGGG 59.849 38.462 0.00 0.00 0.00 3.95
120 121 7.023575 CACACGAAAATTAGAATCTGGAAAGG 58.976 38.462 0.00 0.00 0.00 3.11
121 122 7.535258 CACACACGAAAATTAGAATCTGGAAAG 59.465 37.037 0.00 0.00 0.00 2.62
122 123 7.359595 CACACACGAAAATTAGAATCTGGAAA 58.640 34.615 0.00 0.00 0.00 3.13
123 124 6.072728 CCACACACGAAAATTAGAATCTGGAA 60.073 38.462 0.00 0.00 0.00 3.53
124 125 5.411361 CCACACACGAAAATTAGAATCTGGA 59.589 40.000 0.00 0.00 0.00 3.86
125 126 5.411361 TCCACACACGAAAATTAGAATCTGG 59.589 40.000 0.00 0.00 0.00 3.86
126 127 6.480524 TCCACACACGAAAATTAGAATCTG 57.519 37.500 0.00 0.00 0.00 2.90
127 128 6.878923 TGATCCACACACGAAAATTAGAATCT 59.121 34.615 0.00 0.00 0.00 2.40
128 129 7.072177 TGATCCACACACGAAAATTAGAATC 57.928 36.000 0.00 0.00 0.00 2.52
144 145 6.433716 TGCTTGAAAATGAATAGTGATCCACA 59.566 34.615 0.00 0.00 36.74 4.17
145 146 6.749118 GTGCTTGAAAATGAATAGTGATCCAC 59.251 38.462 0.00 0.00 34.10 4.02
146 147 6.660521 AGTGCTTGAAAATGAATAGTGATCCA 59.339 34.615 0.00 0.00 0.00 3.41
147 148 7.093322 AGTGCTTGAAAATGAATAGTGATCC 57.907 36.000 0.00 0.00 0.00 3.36
148 149 8.025445 ACAAGTGCTTGAAAATGAATAGTGATC 58.975 33.333 17.62 0.00 42.93 2.92
149 150 7.889469 ACAAGTGCTTGAAAATGAATAGTGAT 58.111 30.769 17.62 0.00 42.93 3.06
150 151 7.275888 ACAAGTGCTTGAAAATGAATAGTGA 57.724 32.000 17.62 0.00 42.93 3.41
151 152 8.075574 TGTACAAGTGCTTGAAAATGAATAGTG 58.924 33.333 17.62 0.00 42.93 2.74
152 153 8.165239 TGTACAAGTGCTTGAAAATGAATAGT 57.835 30.769 17.62 0.00 42.93 2.12
153 154 9.462174 TTTGTACAAGTGCTTGAAAATGAATAG 57.538 29.630 17.62 0.00 42.93 1.73
154 155 9.809096 TTTTGTACAAGTGCTTGAAAATGAATA 57.191 25.926 17.62 0.00 42.93 1.75
155 156 8.715191 TTTTGTACAAGTGCTTGAAAATGAAT 57.285 26.923 17.62 0.00 42.93 2.57
156 157 8.439286 GTTTTTGTACAAGTGCTTGAAAATGAA 58.561 29.630 17.62 6.01 42.93 2.57
157 158 7.600375 TGTTTTTGTACAAGTGCTTGAAAATGA 59.400 29.630 17.62 4.08 42.93 2.57
158 159 7.737395 TGTTTTTGTACAAGTGCTTGAAAATG 58.263 30.769 17.62 0.00 42.93 2.32
159 160 7.897575 TGTTTTTGTACAAGTGCTTGAAAAT 57.102 28.000 17.62 0.00 42.93 1.82
160 161 7.600375 TCATGTTTTTGTACAAGTGCTTGAAAA 59.400 29.630 17.62 11.06 42.93 2.29
161 162 7.093354 TCATGTTTTTGTACAAGTGCTTGAAA 58.907 30.769 17.62 2.04 42.93 2.69
162 163 6.625362 TCATGTTTTTGTACAAGTGCTTGAA 58.375 32.000 17.62 0.00 42.93 2.69
163 164 6.201226 TCATGTTTTTGTACAAGTGCTTGA 57.799 33.333 17.62 12.23 42.93 3.02
164 165 6.884096 TTCATGTTTTTGTACAAGTGCTTG 57.116 33.333 8.56 10.09 45.58 4.01
165 166 7.897575 TTTTCATGTTTTTGTACAAGTGCTT 57.102 28.000 8.56 0.00 0.00 3.91
166 167 7.465781 GCATTTTCATGTTTTTGTACAAGTGCT 60.466 33.333 8.56 0.00 32.28 4.40
167 168 6.628461 GCATTTTCATGTTTTTGTACAAGTGC 59.372 34.615 8.56 3.73 32.28 4.40
168 169 7.011295 AGGCATTTTCATGTTTTTGTACAAGTG 59.989 33.333 8.56 4.86 32.28 3.16
169 170 7.047271 AGGCATTTTCATGTTTTTGTACAAGT 58.953 30.769 8.56 0.00 32.28 3.16
170 171 7.481275 AGGCATTTTCATGTTTTTGTACAAG 57.519 32.000 8.56 0.00 32.28 3.16
171 172 7.011857 GGAAGGCATTTTCATGTTTTTGTACAA 59.988 33.333 3.59 3.59 32.28 2.41
172 173 6.481644 GGAAGGCATTTTCATGTTTTTGTACA 59.518 34.615 0.00 0.00 32.28 2.90
173 174 6.705825 AGGAAGGCATTTTCATGTTTTTGTAC 59.294 34.615 0.00 0.00 32.28 2.90
174 175 6.825610 AGGAAGGCATTTTCATGTTTTTGTA 58.174 32.000 0.00 0.00 32.28 2.41
193 194 0.608640 ACACGTGAGGGCTTAGGAAG 59.391 55.000 25.01 0.00 38.93 3.46
200 206 1.227853 GACCAAACACGTGAGGGCT 60.228 57.895 25.01 10.40 38.93 5.19
208 214 2.551912 GCCCACCTGACCAAACACG 61.552 63.158 0.00 0.00 0.00 4.49
221 227 1.704641 AAAAGGAGGTCTTTGCCCAC 58.295 50.000 0.00 0.00 44.30 4.61
229 235 1.594331 GCACGACAAAAAGGAGGTCT 58.406 50.000 0.00 0.00 0.00 3.85
230 236 0.234884 CGCACGACAAAAAGGAGGTC 59.765 55.000 0.00 0.00 0.00 3.85
238 244 2.387125 GAAGCTGCCGCACGACAAAA 62.387 55.000 2.05 0.00 39.10 2.44
250 256 1.140452 TGGAGATGATGAGGAAGCTGC 59.860 52.381 0.00 0.00 0.00 5.25
298 304 1.082117 GTACGAAGCACCGATGTGGG 61.082 60.000 4.78 0.00 44.64 4.61
306 312 2.505557 CGACGGGTACGAAGCACC 60.506 66.667 0.00 0.00 44.60 5.01
324 330 3.842925 TTTCGGGTCTGGCCAGCAC 62.843 63.158 28.91 24.00 39.65 4.40
325 331 2.905996 ATTTCGGGTCTGGCCAGCA 61.906 57.895 28.91 14.20 39.65 4.41
326 332 2.044946 ATTTCGGGTCTGGCCAGC 60.045 61.111 28.91 21.69 39.65 4.85
327 333 2.409870 GCATTTCGGGTCTGGCCAG 61.410 63.158 27.87 27.87 39.65 4.85
328 334 2.361104 GCATTTCGGGTCTGGCCA 60.361 61.111 4.71 4.71 39.65 5.36
329 335 3.508840 CGCATTTCGGGTCTGGCC 61.509 66.667 0.00 0.00 33.78 5.36
330 336 2.746277 ACGCATTTCGGGTCTGGC 60.746 61.111 0.00 0.00 43.86 4.85
335 341 3.419759 GTGCGACGCATTTCGGGT 61.420 61.111 27.23 0.00 41.91 5.28
336 342 4.499023 CGTGCGACGCATTTCGGG 62.499 66.667 27.23 7.60 41.91 5.14
337 343 3.474904 TCGTGCGACGCATTTCGG 61.475 61.111 27.23 12.85 41.91 4.30
338 344 2.275202 GTCGTGCGACGCATTTCG 60.275 61.111 27.23 23.68 41.91 3.46
350 356 2.666190 CCACTGGTGGCAGTCGTG 60.666 66.667 6.84 0.00 44.73 4.35
359 365 2.069273 CGAAAGTTAGCTCCACTGGTG 58.931 52.381 0.00 0.00 0.00 4.17
360 366 1.608283 GCGAAAGTTAGCTCCACTGGT 60.608 52.381 0.00 0.00 0.00 4.00
361 367 1.079503 GCGAAAGTTAGCTCCACTGG 58.920 55.000 0.00 0.00 0.00 4.00
362 368 1.795768 TGCGAAAGTTAGCTCCACTG 58.204 50.000 0.00 0.00 0.00 3.66
363 369 2.622436 GATGCGAAAGTTAGCTCCACT 58.378 47.619 0.00 0.00 0.00 4.00
364 370 1.324736 CGATGCGAAAGTTAGCTCCAC 59.675 52.381 0.00 0.00 0.00 4.02
365 371 1.067142 ACGATGCGAAAGTTAGCTCCA 60.067 47.619 0.00 0.00 0.00 3.86
366 372 1.588861 GACGATGCGAAAGTTAGCTCC 59.411 52.381 0.00 0.00 0.00 4.70
367 373 1.253034 CGACGATGCGAAAGTTAGCTC 59.747 52.381 0.00 0.85 0.00 4.09
368 374 1.269166 CGACGATGCGAAAGTTAGCT 58.731 50.000 0.00 0.00 0.00 3.32
369 375 0.314339 GCGACGATGCGAAAGTTAGC 60.314 55.000 0.00 0.00 0.00 3.09
370 376 0.297820 GGCGACGATGCGAAAGTTAG 59.702 55.000 0.00 0.00 35.06 2.34
371 377 2.365823 GGCGACGATGCGAAAGTTA 58.634 52.632 0.00 0.00 35.06 2.24
372 378 3.165498 GGCGACGATGCGAAAGTT 58.835 55.556 0.00 0.00 35.06 2.66
390 396 2.234300 TATCTCCGTCGGGCATTTTC 57.766 50.000 12.29 0.00 0.00 2.29
395 401 0.467474 ACTCATATCTCCGTCGGGCA 60.467 55.000 12.29 0.00 0.00 5.36
398 404 1.001268 CCACACTCATATCTCCGTCGG 60.001 57.143 4.39 4.39 0.00 4.79
402 408 2.028658 CCATCCCACACTCATATCTCCG 60.029 54.545 0.00 0.00 0.00 4.63
410 416 1.271840 GGGCTACCATCCCACACTCA 61.272 60.000 0.00 0.00 43.37 3.41
446 452 1.202222 CCAGGCATTTGCGTCAAGATC 60.202 52.381 0.00 0.00 43.26 2.75
457 463 3.694538 GGTTGCGCCCAGGCATTT 61.695 61.111 4.18 0.00 43.52 2.32
476 482 1.089481 GTTGATCGCGAAGGATGGCA 61.089 55.000 15.24 0.00 0.00 4.92
482 488 2.890474 CCCGGTTGATCGCGAAGG 60.890 66.667 15.24 9.86 0.00 3.46
486 492 4.160635 GCAACCCGGTTGATCGCG 62.161 66.667 30.76 0.00 45.28 5.87
501 507 2.818169 AAAGGTGTCCTGCTCGGCA 61.818 57.895 0.00 0.00 36.92 5.69
510 516 1.002142 GTAAACGTGCCAAAGGTGTCC 60.002 52.381 0.00 0.00 0.00 4.02
511 517 1.333435 CGTAAACGTGCCAAAGGTGTC 60.333 52.381 0.00 0.00 34.11 3.67
512 518 0.658897 CGTAAACGTGCCAAAGGTGT 59.341 50.000 0.00 0.00 34.11 4.16
513 519 0.659123 GCGTAAACGTGCCAAAGGTG 60.659 55.000 4.24 0.00 42.22 4.00
514 520 1.650363 GCGTAAACGTGCCAAAGGT 59.350 52.632 4.24 0.00 42.22 3.50
515 521 4.526152 GCGTAAACGTGCCAAAGG 57.474 55.556 4.24 0.00 42.22 3.11
520 526 4.125097 CGACGGCGTAAACGTGCC 62.125 66.667 14.74 4.59 45.68 5.01
521 527 3.098958 TCGACGGCGTAAACGTGC 61.099 61.111 14.74 0.00 45.68 5.34
522 528 1.538946 TTGTCGACGGCGTAAACGTG 61.539 55.000 14.74 0.00 45.68 4.49
524 530 1.126438 GTTGTCGACGGCGTAAACG 59.874 57.895 14.74 13.47 43.27 3.60
534 540 0.438830 GCCATGAAGACGTTGTCGAC 59.561 55.000 9.11 9.11 37.67 4.20
535 541 0.669318 GGCCATGAAGACGTTGTCGA 60.669 55.000 0.00 0.00 37.67 4.20
536 542 1.635663 GGGCCATGAAGACGTTGTCG 61.636 60.000 4.39 0.00 37.67 4.35
537 543 1.305930 GGGGCCATGAAGACGTTGTC 61.306 60.000 4.39 0.00 0.00 3.18
538 544 1.303317 GGGGCCATGAAGACGTTGT 60.303 57.895 4.39 0.00 0.00 3.32
539 545 2.398554 CGGGGCCATGAAGACGTTG 61.399 63.158 4.39 0.00 0.00 4.10
540 546 2.046314 CGGGGCCATGAAGACGTT 60.046 61.111 4.39 0.00 0.00 3.99
541 547 4.778143 GCGGGGCCATGAAGACGT 62.778 66.667 4.39 0.00 0.00 4.34
553 559 1.737355 TTATACGACCTTCGGCGGGG 61.737 60.000 7.21 12.66 45.59 5.73
554 560 0.318445 CTTATACGACCTTCGGCGGG 60.318 60.000 7.21 3.35 45.59 6.13
555 561 0.938168 GCTTATACGACCTTCGGCGG 60.938 60.000 7.21 0.00 45.59 6.13
556 562 0.248743 TGCTTATACGACCTTCGGCG 60.249 55.000 0.00 0.00 45.59 6.46
557 563 1.066605 TCTGCTTATACGACCTTCGGC 59.933 52.381 0.03 0.00 45.59 5.54
558 564 3.004419 TGATCTGCTTATACGACCTTCGG 59.996 47.826 0.03 0.00 45.59 4.30
559 565 4.224715 TGATCTGCTTATACGACCTTCG 57.775 45.455 0.00 0.00 46.93 3.79
560 566 4.854291 CGATGATCTGCTTATACGACCTTC 59.146 45.833 0.00 0.00 0.00 3.46
561 567 4.799678 CGATGATCTGCTTATACGACCTT 58.200 43.478 0.00 0.00 0.00 3.50
562 568 3.366476 GCGATGATCTGCTTATACGACCT 60.366 47.826 0.00 0.00 0.00 3.85
563 569 2.917971 GCGATGATCTGCTTATACGACC 59.082 50.000 0.00 0.00 0.00 4.79
564 570 3.827625 AGCGATGATCTGCTTATACGAC 58.172 45.455 6.07 0.00 38.57 4.34
572 578 1.434622 CGGCAAAGCGATGATCTGCT 61.435 55.000 6.07 6.07 44.97 4.24
573 579 1.010350 CGGCAAAGCGATGATCTGC 60.010 57.895 0.00 1.93 0.00 4.26
574 580 1.010350 GCGGCAAAGCGATGATCTG 60.010 57.895 0.00 0.00 0.00 2.90
575 581 2.182842 GGCGGCAAAGCGATGATCT 61.183 57.895 3.07 0.00 38.18 2.75
576 582 0.880278 TAGGCGGCAAAGCGATGATC 60.880 55.000 13.08 0.00 38.18 2.92
577 583 0.882042 CTAGGCGGCAAAGCGATGAT 60.882 55.000 13.08 0.00 38.18 2.45
578 584 1.521457 CTAGGCGGCAAAGCGATGA 60.521 57.895 13.08 0.00 38.18 2.92
579 585 2.537560 CCTAGGCGGCAAAGCGATG 61.538 63.158 13.08 0.00 38.18 3.84
580 586 2.203070 CCTAGGCGGCAAAGCGAT 60.203 61.111 13.08 0.00 38.18 4.58
597 603 2.746277 ATGTTCCGTCGGCAAGGC 60.746 61.111 6.34 0.00 0.00 4.35
598 604 1.375396 TCATGTTCCGTCGGCAAGG 60.375 57.895 6.34 0.00 0.00 3.61
599 605 1.635663 GGTCATGTTCCGTCGGCAAG 61.636 60.000 6.34 0.00 0.00 4.01
600 606 1.669760 GGTCATGTTCCGTCGGCAA 60.670 57.895 6.34 0.00 0.00 4.52
601 607 2.047655 GGTCATGTTCCGTCGGCA 60.048 61.111 6.34 0.00 0.00 5.69
602 608 1.669760 TTGGTCATGTTCCGTCGGC 60.670 57.895 6.34 0.00 0.00 5.54
603 609 1.623081 CGTTGGTCATGTTCCGTCGG 61.623 60.000 4.39 4.39 0.00 4.79
604 610 0.665068 TCGTTGGTCATGTTCCGTCG 60.665 55.000 14.10 14.10 0.00 5.12
605 611 1.504359 TTCGTTGGTCATGTTCCGTC 58.496 50.000 0.00 0.00 0.00 4.79
606 612 1.600485 GTTTCGTTGGTCATGTTCCGT 59.400 47.619 0.00 0.00 0.00 4.69
607 613 1.600013 TGTTTCGTTGGTCATGTTCCG 59.400 47.619 0.00 0.00 0.00 4.30
608 614 2.287368 GGTGTTTCGTTGGTCATGTTCC 60.287 50.000 0.00 0.00 0.00 3.62
609 615 2.356382 TGGTGTTTCGTTGGTCATGTTC 59.644 45.455 0.00 0.00 0.00 3.18
610 616 2.098443 GTGGTGTTTCGTTGGTCATGTT 59.902 45.455 0.00 0.00 0.00 2.71
611 617 1.673920 GTGGTGTTTCGTTGGTCATGT 59.326 47.619 0.00 0.00 0.00 3.21
612 618 1.946768 AGTGGTGTTTCGTTGGTCATG 59.053 47.619 0.00 0.00 0.00 3.07
613 619 1.946768 CAGTGGTGTTTCGTTGGTCAT 59.053 47.619 0.00 0.00 0.00 3.06
614 620 1.374560 CAGTGGTGTTTCGTTGGTCA 58.625 50.000 0.00 0.00 0.00 4.02
615 621 0.028902 GCAGTGGTGTTTCGTTGGTC 59.971 55.000 0.00 0.00 0.00 4.02
616 622 0.678366 TGCAGTGGTGTTTCGTTGGT 60.678 50.000 0.00 0.00 0.00 3.67
617 623 0.029300 CTGCAGTGGTGTTTCGTTGG 59.971 55.000 5.25 0.00 0.00 3.77
618 624 0.732571 ACTGCAGTGGTGTTTCGTTG 59.267 50.000 20.97 0.00 0.00 4.10
619 625 1.014352 GACTGCAGTGGTGTTTCGTT 58.986 50.000 27.27 0.00 0.00 3.85
620 626 0.814010 GGACTGCAGTGGTGTTTCGT 60.814 55.000 27.27 0.00 0.00 3.85
621 627 1.507141 GGGACTGCAGTGGTGTTTCG 61.507 60.000 27.27 0.00 0.00 3.46
622 628 0.465460 TGGGACTGCAGTGGTGTTTC 60.465 55.000 27.27 7.57 0.00 2.78
623 629 0.751643 GTGGGACTGCAGTGGTGTTT 60.752 55.000 27.27 0.00 0.00 2.83
624 630 1.152963 GTGGGACTGCAGTGGTGTT 60.153 57.895 27.27 0.00 0.00 3.32
625 631 2.510906 GTGGGACTGCAGTGGTGT 59.489 61.111 27.27 0.00 0.00 4.16
626 632 2.666190 CGTGGGACTGCAGTGGTG 60.666 66.667 27.27 5.41 0.00 4.17
627 633 4.626081 GCGTGGGACTGCAGTGGT 62.626 66.667 27.27 0.00 0.00 4.16
636 642 4.778143 ATCCAAGGCGCGTGGGAC 62.778 66.667 27.78 0.00 36.73 4.46
637 643 4.467084 GATCCAAGGCGCGTGGGA 62.467 66.667 27.43 27.43 36.73 4.37
638 644 4.776322 TGATCCAAGGCGCGTGGG 62.776 66.667 23.94 21.29 36.73 4.61
639 645 2.514592 ATGATCCAAGGCGCGTGG 60.515 61.111 19.87 19.87 37.51 4.94
640 646 2.040213 GACATGATCCAAGGCGCGTG 62.040 60.000 8.43 2.53 0.00 5.34
641 647 1.815421 GACATGATCCAAGGCGCGT 60.815 57.895 8.43 0.00 0.00 6.01
642 648 2.874694 CGACATGATCCAAGGCGCG 61.875 63.158 0.00 0.00 24.16 6.86
643 649 2.537560 CCGACATGATCCAAGGCGC 61.538 63.158 0.00 0.00 31.90 6.53
644 650 0.104120 TACCGACATGATCCAAGGCG 59.896 55.000 0.00 0.00 33.12 5.52
645 651 1.412710 TCTACCGACATGATCCAAGGC 59.587 52.381 0.00 0.00 0.00 4.35
646 652 2.546795 GCTCTACCGACATGATCCAAGG 60.547 54.545 0.00 0.00 0.00 3.61
647 653 2.748605 GCTCTACCGACATGATCCAAG 58.251 52.381 0.00 0.00 0.00 3.61
648 654 1.067060 CGCTCTACCGACATGATCCAA 59.933 52.381 0.00 0.00 0.00 3.53
649 655 0.668535 CGCTCTACCGACATGATCCA 59.331 55.000 0.00 0.00 0.00 3.41
650 656 0.664767 GCGCTCTACCGACATGATCC 60.665 60.000 0.00 0.00 0.00 3.36
651 657 0.664767 GGCGCTCTACCGACATGATC 60.665 60.000 7.64 0.00 35.95 2.92
652 658 1.364171 GGCGCTCTACCGACATGAT 59.636 57.895 7.64 0.00 35.95 2.45
653 659 2.805546 GGCGCTCTACCGACATGA 59.194 61.111 7.64 0.00 35.95 3.07
660 666 4.814294 CCACACCGGCGCTCTACC 62.814 72.222 7.64 0.00 0.00 3.18
661 667 4.065281 ACCACACCGGCGCTCTAC 62.065 66.667 7.64 0.00 39.03 2.59
662 668 4.063967 CACCACACCGGCGCTCTA 62.064 66.667 7.64 0.00 39.03 2.43
667 673 4.386951 TGATCCACCACACCGGCG 62.387 66.667 0.00 0.00 39.03 6.46
668 674 2.746277 GTGATCCACCACACCGGC 60.746 66.667 0.00 0.00 39.03 6.13
669 675 2.747022 TGTGATCCACCACACCGG 59.253 61.111 0.00 0.00 41.63 5.28
677 683 2.380410 GCGACGGTGTGTGATCCAC 61.380 63.158 0.00 7.22 44.78 4.02
678 684 2.048597 GCGACGGTGTGTGATCCA 60.049 61.111 0.00 0.00 0.00 3.41
679 685 1.805945 GAGCGACGGTGTGTGATCC 60.806 63.158 3.31 0.00 0.00 3.36
680 686 1.805945 GGAGCGACGGTGTGTGATC 60.806 63.158 3.31 0.00 0.00 2.92
681 687 2.261671 GGAGCGACGGTGTGTGAT 59.738 61.111 3.31 0.00 0.00 3.06
682 688 3.986006 GGGAGCGACGGTGTGTGA 61.986 66.667 3.31 0.00 0.00 3.58
683 689 3.589654 ATGGGAGCGACGGTGTGTG 62.590 63.158 3.31 0.00 0.00 3.82
684 690 3.296709 GATGGGAGCGACGGTGTGT 62.297 63.158 3.31 0.00 0.00 3.72
685 691 2.509336 GATGGGAGCGACGGTGTG 60.509 66.667 3.31 0.00 0.00 3.82
686 692 4.129737 CGATGGGAGCGACGGTGT 62.130 66.667 3.31 0.00 0.00 4.16
687 693 4.873129 CCGATGGGAGCGACGGTG 62.873 72.222 3.31 0.00 40.42 4.94
690 696 4.873129 CCACCGATGGGAGCGACG 62.873 72.222 0.00 0.00 43.04 5.12
703 709 4.408821 TGCTCATGCCGGACCACC 62.409 66.667 5.05 0.00 38.71 4.61
704 710 3.127533 GTGCTCATGCCGGACCAC 61.128 66.667 5.05 0.00 38.71 4.16
705 711 4.408821 GGTGCTCATGCCGGACCA 62.409 66.667 5.05 0.00 38.71 4.02
707 713 4.408821 TGGGTGCTCATGCCGGAC 62.409 66.667 5.05 0.00 38.71 4.79
708 714 4.408821 GTGGGTGCTCATGCCGGA 62.409 66.667 5.05 0.00 38.71 5.14
709 715 4.720902 TGTGGGTGCTCATGCCGG 62.721 66.667 0.00 0.00 38.71 6.13
710 716 3.129502 CTGTGGGTGCTCATGCCG 61.130 66.667 0.00 0.00 38.71 5.69
711 717 1.748122 CTCTGTGGGTGCTCATGCC 60.748 63.158 0.00 0.00 38.71 4.40
712 718 2.404995 GCTCTGTGGGTGCTCATGC 61.405 63.158 0.00 0.00 40.20 4.06
713 719 2.104859 CGCTCTGTGGGTGCTCATG 61.105 63.158 0.00 0.00 32.84 3.07
714 720 2.267006 CGCTCTGTGGGTGCTCAT 59.733 61.111 0.00 0.00 32.84 2.90
715 721 4.007644 CCGCTCTGTGGGTGCTCA 62.008 66.667 0.00 0.00 32.84 4.26
726 732 4.124943 TAGTCCTCGGGCCGCTCT 62.125 66.667 23.83 17.54 0.00 4.09
727 733 3.597728 CTAGTCCTCGGGCCGCTC 61.598 72.222 23.83 11.03 0.00 5.03
728 734 4.444081 ACTAGTCCTCGGGCCGCT 62.444 66.667 23.83 15.26 0.00 5.52
729 735 4.208686 CACTAGTCCTCGGGCCGC 62.209 72.222 23.83 7.19 0.00 6.53
730 736 1.445716 CTACACTAGTCCTCGGGCCG 61.446 65.000 22.51 22.51 0.00 6.13
731 737 1.736365 GCTACACTAGTCCTCGGGCC 61.736 65.000 0.00 0.00 0.00 5.80
732 738 1.734748 GCTACACTAGTCCTCGGGC 59.265 63.158 0.00 0.00 0.00 6.13
733 739 0.395311 TGGCTACACTAGTCCTCGGG 60.395 60.000 0.00 0.00 0.00 5.14
734 740 0.739561 GTGGCTACACTAGTCCTCGG 59.260 60.000 0.00 0.00 44.29 4.63
735 741 0.377554 CGTGGCTACACTAGTCCTCG 59.622 60.000 0.00 7.99 45.50 4.63
736 742 0.100861 GCGTGGCTACACTAGTCCTC 59.899 60.000 0.00 0.00 45.50 3.71
737 743 0.323542 AGCGTGGCTACACTAGTCCT 60.324 55.000 0.00 0.00 45.50 3.85
738 744 1.386533 TAGCGTGGCTACACTAGTCC 58.613 55.000 0.00 0.00 45.50 3.85
739 745 2.479219 GGTTAGCGTGGCTACACTAGTC 60.479 54.545 0.00 0.00 45.50 2.59
740 746 1.475682 GGTTAGCGTGGCTACACTAGT 59.524 52.381 0.00 0.00 45.50 2.57
741 747 1.533338 CGGTTAGCGTGGCTACACTAG 60.533 57.143 0.00 0.00 45.50 2.57
742 748 0.452987 CGGTTAGCGTGGCTACACTA 59.547 55.000 0.00 0.00 45.50 2.74
743 749 1.214589 CGGTTAGCGTGGCTACACT 59.785 57.895 0.00 0.00 45.50 3.55
744 750 2.450345 GCGGTTAGCGTGGCTACAC 61.450 63.158 5.55 0.00 41.12 2.90
745 751 2.125832 GCGGTTAGCGTGGCTACA 60.126 61.111 5.55 0.00 41.12 2.74
755 761 1.006832 CCGTGGATTGAAGCGGTTAG 58.993 55.000 0.00 0.00 39.41 2.34
756 762 3.146783 CCGTGGATTGAAGCGGTTA 57.853 52.632 0.00 0.00 39.41 2.85
757 763 3.981308 CCGTGGATTGAAGCGGTT 58.019 55.556 0.00 0.00 39.41 4.44
760 766 2.225068 AGATACCGTGGATTGAAGCG 57.775 50.000 0.00 0.00 0.00 4.68
761 767 3.321111 TCCTAGATACCGTGGATTGAAGC 59.679 47.826 0.00 0.00 0.00 3.86
762 768 5.509840 CCTTCCTAGATACCGTGGATTGAAG 60.510 48.000 0.00 0.00 0.00 3.02
763 769 4.344102 CCTTCCTAGATACCGTGGATTGAA 59.656 45.833 0.00 0.00 0.00 2.69
764 770 3.895656 CCTTCCTAGATACCGTGGATTGA 59.104 47.826 0.00 0.00 0.00 2.57
765 771 3.641906 ACCTTCCTAGATACCGTGGATTG 59.358 47.826 0.00 0.00 0.00 2.67
766 772 3.641906 CACCTTCCTAGATACCGTGGATT 59.358 47.826 0.00 0.00 0.00 3.01
767 773 3.231818 CACCTTCCTAGATACCGTGGAT 58.768 50.000 0.00 0.00 0.00 3.41
768 774 2.662866 CACCTTCCTAGATACCGTGGA 58.337 52.381 0.00 0.00 0.00 4.02
769 775 1.687123 CCACCTTCCTAGATACCGTGG 59.313 57.143 0.00 0.00 33.91 4.94
770 776 2.623889 CTCCACCTTCCTAGATACCGTG 59.376 54.545 0.00 0.00 0.00 4.94
771 777 2.424523 CCTCCACCTTCCTAGATACCGT 60.425 54.545 0.00 0.00 0.00 4.83
772 778 2.158505 TCCTCCACCTTCCTAGATACCG 60.159 54.545 0.00 0.00 0.00 4.02
773 779 3.502356 CTCCTCCACCTTCCTAGATACC 58.498 54.545 0.00 0.00 0.00 2.73
774 780 3.117054 ACCTCCTCCACCTTCCTAGATAC 60.117 52.174 0.00 0.00 0.00 2.24
775 781 3.117093 CACCTCCTCCACCTTCCTAGATA 60.117 52.174 0.00 0.00 0.00 1.98
776 782 1.940957 ACCTCCTCCACCTTCCTAGAT 59.059 52.381 0.00 0.00 0.00 1.98
777 783 1.007238 CACCTCCTCCACCTTCCTAGA 59.993 57.143 0.00 0.00 0.00 2.43
778 784 1.007238 TCACCTCCTCCACCTTCCTAG 59.993 57.143 0.00 0.00 0.00 3.02
779 785 1.089978 TCACCTCCTCCACCTTCCTA 58.910 55.000 0.00 0.00 0.00 2.94
780 786 0.419459 ATCACCTCCTCCACCTTCCT 59.581 55.000 0.00 0.00 0.00 3.36
781 787 0.543749 CATCACCTCCTCCACCTTCC 59.456 60.000 0.00 0.00 0.00 3.46
782 788 1.208293 GACATCACCTCCTCCACCTTC 59.792 57.143 0.00 0.00 0.00 3.46
783 789 1.280457 GACATCACCTCCTCCACCTT 58.720 55.000 0.00 0.00 0.00 3.50
784 790 0.972983 CGACATCACCTCCTCCACCT 60.973 60.000 0.00 0.00 0.00 4.00
785 791 1.517832 CGACATCACCTCCTCCACC 59.482 63.158 0.00 0.00 0.00 4.61
786 792 1.153549 GCGACATCACCTCCTCCAC 60.154 63.158 0.00 0.00 0.00 4.02
787 793 2.359169 GGCGACATCACCTCCTCCA 61.359 63.158 0.00 0.00 0.00 3.86
788 794 2.022240 GAGGCGACATCACCTCCTCC 62.022 65.000 4.82 0.00 45.71 4.30
789 795 1.439644 GAGGCGACATCACCTCCTC 59.560 63.158 4.82 0.00 45.71 3.71
790 796 3.622514 GAGGCGACATCACCTCCT 58.377 61.111 4.82 0.00 45.71 3.69
799 805 2.343758 GCCAGTTGAGAGGCGACA 59.656 61.111 0.00 0.00 41.70 4.35
814 820 4.796495 CCCAGTTACGGCCCAGCC 62.796 72.222 0.00 0.00 46.75 4.85
815 821 4.796495 CCCCAGTTACGGCCCAGC 62.796 72.222 0.00 0.00 0.00 4.85
816 822 1.555477 TTACCCCAGTTACGGCCCAG 61.555 60.000 0.00 0.00 0.00 4.45
882 888 1.063649 GCCGTGATGCAAGCAGATG 59.936 57.895 0.00 0.00 24.12 2.90
1117 1142 4.761304 AGGGGGAGGGGGAGAGGA 62.761 72.222 0.00 0.00 0.00 3.71
1417 1454 4.135153 CGAGGGTGGAGTGGAGCG 62.135 72.222 0.00 0.00 0.00 5.03
1430 1467 2.426305 AAAAGTTCCCCCAGCCGAGG 62.426 60.000 0.00 0.00 0.00 4.63
1431 1468 0.539669 AAAAAGTTCCCCCAGCCGAG 60.540 55.000 0.00 0.00 0.00 4.63
1510 1551 3.413327 TCTGTCACTACTGGTGTCTCTC 58.587 50.000 0.00 0.00 45.50 3.20
1514 1555 4.325119 TCTACTCTGTCACTACTGGTGTC 58.675 47.826 0.00 0.00 45.50 3.67
1521 1562 4.214971 TGGTTCGTTCTACTCTGTCACTAC 59.785 45.833 0.00 0.00 0.00 2.73
1563 1604 0.587768 CAGCCGCAATCAATATCGCA 59.412 50.000 0.00 0.00 0.00 5.10
1564 1605 0.588252 ACAGCCGCAATCAATATCGC 59.412 50.000 0.00 0.00 0.00 4.58
1567 1608 3.925379 TCGATACAGCCGCAATCAATAT 58.075 40.909 0.00 0.00 0.00 1.28
1568 1609 3.378911 TCGATACAGCCGCAATCAATA 57.621 42.857 0.00 0.00 0.00 1.90
1610 1663 2.234896 TCATGTTTGCATCCACCCAT 57.765 45.000 0.00 0.00 31.99 4.00
1706 1759 1.317613 TGACACATGGAACCAACAGC 58.682 50.000 0.00 0.00 0.00 4.40
1713 1766 4.701956 ATTCCGAATTGACACATGGAAC 57.298 40.909 0.00 0.00 38.23 3.62
1730 1783 5.300034 TGCATCAATACACATCCTGAATTCC 59.700 40.000 2.27 0.00 0.00 3.01
1739 1792 5.565592 TCAGGTTTGCATCAATACACATC 57.434 39.130 0.00 0.00 0.00 3.06
1745 1799 6.211184 ACCAAGAATTCAGGTTTGCATCAATA 59.789 34.615 14.76 0.00 29.58 1.90
1751 1805 2.224018 GCACCAAGAATTCAGGTTTGCA 60.224 45.455 17.15 0.00 32.15 4.08
1753 1807 2.364970 TGGCACCAAGAATTCAGGTTTG 59.635 45.455 17.15 8.58 32.15 2.93
1793 1848 5.043762 AGGGGGAAATCCTGAACTTGTATA 58.956 41.667 0.00 0.00 35.95 1.47
1799 1854 3.923273 AAAAGGGGGAAATCCTGAACT 57.077 42.857 0.00 0.00 34.34 3.01
1842 1902 8.741841 ACATCATGTATCATTGTTGATTTGACA 58.258 29.630 0.00 0.00 42.61 3.58
1860 1920 6.015688 AGACAAGCTTCAAATCAACATCATGT 60.016 34.615 0.00 0.00 0.00 3.21
1893 1953 2.952310 AGTCAACTTTGGAAGTGGAAGC 59.048 45.455 0.00 0.00 42.88 3.86
1894 1954 3.243201 GCAGTCAACTTTGGAAGTGGAAG 60.243 47.826 0.00 0.00 42.88 3.46
1899 1959 3.825328 AGATGCAGTCAACTTTGGAAGT 58.175 40.909 0.00 0.00 45.46 3.01
1902 1962 4.935702 CAAAAGATGCAGTCAACTTTGGA 58.064 39.130 0.00 0.00 42.21 3.53
1927 1987 6.211184 AGGAAATTCAAGTTTGGCATATGACA 59.789 34.615 7.32 7.32 0.00 3.58
1948 2008 8.321353 ACGATCTATTTATCATATGGCAAGGAA 58.679 33.333 2.13 0.00 0.00 3.36
1986 2046 4.814234 TGTAGTGATGTTGAGTTGTTGACC 59.186 41.667 0.00 0.00 0.00 4.02
2007 2072 4.099881 ACAAAAGGACATGCACTTGATTGT 59.900 37.500 11.37 11.37 0.00 2.71
2072 2144 9.942526 TCCTATCATTTGAGGCAGAGATATATA 57.057 33.333 0.00 0.00 32.40 0.86
2184 2256 5.738619 TGTCCTTTGCTACATTACTCTGA 57.261 39.130 0.00 0.00 0.00 3.27
2221 2293 9.883142 TTTTTGTCTGAAATCTTGGTTGTATTT 57.117 25.926 0.00 0.00 0.00 1.40
2263 2335 7.486802 CAGATGTGCAATCACTGAATACATA 57.513 36.000 10.26 0.00 43.49 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.