Multiple sequence alignment - TraesCS1D01G034900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G034900 chr1D 100.000 6612 0 0 1 6612 15358292 15364903 0.000000e+00 12211.0
1 TraesCS1D01G034900 chr1D 94.759 935 37 10 1118 2049 368917961 368918886 0.000000e+00 1445.0
2 TraesCS1D01G034900 chr1D 94.196 672 29 8 1381 2049 428762536 428763200 0.000000e+00 1016.0
3 TraesCS1D01G034900 chr1D 93.899 672 31 8 1381 2049 394220672 394220008 0.000000e+00 1005.0
4 TraesCS1D01G034900 chr1D 93.304 672 35 8 1381 2049 266860078 266859414 0.000000e+00 983.0
5 TraesCS1D01G034900 chr1D 89.785 372 15 2 828 1196 15345406 15345757 7.820000e-124 455.0
6 TraesCS1D01G034900 chr1D 99.206 252 2 0 1381 1632 42320026 42320277 7.820000e-124 455.0
7 TraesCS1D01G034900 chr1D 90.145 345 24 6 1708 2049 42320277 42320614 2.190000e-119 440.0
8 TraesCS1D01G034900 chr1D 84.112 428 54 9 6154 6568 91067877 91067451 1.030000e-107 401.0
9 TraesCS1D01G034900 chr1D 89.695 262 26 1 675 936 15345126 15345386 3.820000e-87 333.0
10 TraesCS1D01G034900 chr1B 96.909 2135 53 4 1647 3773 22025130 22023001 0.000000e+00 3565.0
11 TraesCS1D01G034900 chr1B 94.578 2250 94 18 3894 6118 22023005 22020759 0.000000e+00 3454.0
12 TraesCS1D01G034900 chr1B 87.013 1001 88 17 1 976 22039543 22038560 0.000000e+00 1090.0
13 TraesCS1D01G034900 chr1B 84.684 1012 111 24 4237 5218 22901587 22902584 0.000000e+00 970.0
14 TraesCS1D01G034900 chr1B 90.090 666 54 7 5426 6080 22868641 22869305 0.000000e+00 854.0
15 TraesCS1D01G034900 chr1B 89.940 666 55 7 5426 6080 22872882 22873546 0.000000e+00 848.0
16 TraesCS1D01G034900 chr1B 89.851 670 55 8 5426 6084 22874296 22874963 0.000000e+00 848.0
17 TraesCS1D01G034900 chr1B 89.790 666 56 7 5426 6080 22870055 22870719 0.000000e+00 843.0
18 TraesCS1D01G034900 chr1B 89.805 667 53 10 5426 6080 22865814 22866477 0.000000e+00 841.0
19 TraesCS1D01G034900 chr1B 89.640 666 57 7 5426 6080 22867227 22867891 0.000000e+00 837.0
20 TraesCS1D01G034900 chr1B 89.640 666 57 7 5426 6080 22871468 22872132 0.000000e+00 837.0
21 TraesCS1D01G034900 chr1B 86.376 367 44 4 6207 6568 323697846 323698211 4.800000e-106 396.0
22 TraesCS1D01G034900 chr1B 95.862 145 3 2 3756 3897 683748102 683747958 1.430000e-56 231.0
23 TraesCS1D01G034900 chr1B 96.992 133 4 0 3764 3896 623731980 623732112 2.400000e-54 224.0
24 TraesCS1D01G034900 chr1B 97.059 68 2 0 6117 6184 182049741 182049808 1.510000e-21 115.0
25 TraesCS1D01G034900 chr1B 95.588 68 3 0 6116 6183 659329707 659329774 7.010000e-20 110.0
26 TraesCS1D01G034900 chr1B 97.917 48 1 0 6117 6164 262804411 262804458 4.250000e-12 84.2
27 TraesCS1D01G034900 chr1B 92.593 54 4 0 6113 6166 68721765 68721712 1.980000e-10 78.7
28 TraesCS1D01G034900 chr1B 87.143 70 6 2 20 89 22038559 22038493 7.110000e-10 76.8
29 TraesCS1D01G034900 chr1A 91.978 2169 118 24 1647 3773 16432957 16435111 0.000000e+00 2990.0
30 TraesCS1D01G034900 chr1A 91.708 1616 94 17 1 1604 16431372 16432959 0.000000e+00 2206.0
31 TraesCS1D01G034900 chr1A 91.251 1383 78 16 4386 5766 16435691 16437032 0.000000e+00 1844.0
32 TraesCS1D01G034900 chr1A 79.304 546 65 18 3913 4426 16435155 16435684 8.210000e-89 339.0
33 TraesCS1D01G034900 chr1A 87.558 217 16 4 5875 6080 16437143 16437359 2.380000e-59 241.0
34 TraesCS1D01G034900 chr6D 95.421 939 32 9 1114 2049 55252089 55251159 0.000000e+00 1485.0
35 TraesCS1D01G034900 chr6D 94.798 942 35 10 1114 2049 335167608 335166675 0.000000e+00 1456.0
36 TraesCS1D01G034900 chr6D 100.000 229 0 0 1404 1632 18950900 18951128 2.200000e-114 424.0
37 TraesCS1D01G034900 chr6D 92.903 155 10 1 1708 1861 18951128 18951282 2.400000e-54 224.0
38 TraesCS1D01G034900 chr6D 84.343 198 19 6 6148 6335 423410246 423410441 4.070000e-42 183.0
39 TraesCS1D01G034900 chr6D 94.118 119 7 0 1355 1473 156193809 156193691 1.460000e-41 182.0
40 TraesCS1D01G034900 chr6D 91.579 95 7 1 1502 1595 156193689 156193595 5.380000e-26 130.0
41 TraesCS1D01G034900 chr3D 94.259 958 40 11 1096 2049 8767202 8766256 0.000000e+00 1450.0
42 TraesCS1D01G034900 chr3D 93.899 672 31 6 1381 2049 490681053 490680389 0.000000e+00 1005.0
43 TraesCS1D01G034900 chr3D 86.689 293 38 1 6207 6498 290038930 290039222 2.300000e-84 324.0
44 TraesCS1D01G034900 chr3D 95.620 137 4 2 3769 3905 610017728 610017594 1.120000e-52 219.0
45 TraesCS1D01G034900 chr3D 86.029 136 19 0 3499 3634 611146542 611146407 5.340000e-31 147.0
46 TraesCS1D01G034900 chr3D 97.959 49 1 0 6116 6164 597392027 597391979 1.180000e-12 86.1
47 TraesCS1D01G034900 chr4D 94.569 939 40 9 1114 2049 272818863 272817933 0.000000e+00 1441.0
48 TraesCS1D01G034900 chr4D 86.735 294 35 4 6207 6498 395628969 395629260 2.300000e-84 324.0
49 TraesCS1D01G034900 chr4D 84.375 320 24 6 6306 6611 112340496 112340189 2.330000e-74 291.0
50 TraesCS1D01G034900 chr4D 94.079 152 9 0 1898 2049 27890580 27890429 1.430000e-56 231.0
51 TraesCS1D01G034900 chr4D 97.959 49 1 0 6116 6164 261980207 261980159 1.180000e-12 86.1
52 TraesCS1D01G034900 chr4D 89.796 49 5 0 6551 6599 99642389 99642341 5.540000e-06 63.9
53 TraesCS1D01G034900 chr7D 94.196 672 28 9 1381 2049 429092140 429092803 0.000000e+00 1014.0
54 TraesCS1D01G034900 chr7D 85.211 426 50 7 6154 6568 17071619 17071196 6.130000e-115 425.0
55 TraesCS1D01G034900 chr7D 91.549 71 6 0 6117 6187 28943324 28943254 1.520000e-16 99.0
56 TraesCS1D01G034900 chr7D 97.917 48 1 0 6117 6164 329479641 329479688 4.250000e-12 84.2
57 TraesCS1D01G034900 chr7D 92.857 56 4 0 6546 6601 297946505 297946560 1.530000e-11 82.4
58 TraesCS1D01G034900 chr7D 92.000 50 4 0 6551 6600 259730678 259730629 3.310000e-08 71.3
59 TraesCS1D01G034900 chr7D 97.561 41 1 0 6571 6611 583306408 583306368 3.310000e-08 71.3
60 TraesCS1D01G034900 chr2D 94.048 672 30 8 1381 2049 465782073 465781409 0.000000e+00 1011.0
61 TraesCS1D01G034900 chr2D 93.750 672 32 8 1381 2049 193903250 193903914 0.000000e+00 1000.0
62 TraesCS1D01G034900 chr2D 97.037 135 4 0 3763 3897 536091159 536091025 1.850000e-55 228.0
63 TraesCS1D01G034900 chr2D 85.507 69 3 4 6154 6215 649009067 649008999 1.540000e-06 65.8
64 TraesCS1D01G034900 chr5D 93.452 672 34 8 1381 2049 39665949 39665285 0.000000e+00 989.0
65 TraesCS1D01G034900 chr5D 98.100 421 8 0 1381 1801 53886514 53886094 0.000000e+00 734.0
66 TraesCS1D01G034900 chrUn 89.697 660 56 7 5426 6074 398484389 398483731 0.000000e+00 832.0
67 TraesCS1D01G034900 chrUn 91.081 583 40 7 5426 5997 407306466 407307047 0.000000e+00 778.0
68 TraesCS1D01G034900 chrUn 86.134 238 18 6 6113 6335 33092415 33092652 6.620000e-60 243.0
69 TraesCS1D01G034900 chr4B 92.966 327 18 3 1647 1973 219354695 219354374 7.760000e-129 472.0
70 TraesCS1D01G034900 chr4B 84.687 431 54 6 6149 6568 563229757 563230186 2.850000e-113 420.0
71 TraesCS1D01G034900 chr4B 93.793 145 6 3 3768 3909 671676823 671676679 1.440000e-51 215.0
72 TraesCS1D01G034900 chr4B 85.185 108 8 5 6115 6215 23098807 23098701 3.260000e-18 104.0
73 TraesCS1D01G034900 chr4B 100.000 33 0 0 6569 6601 507194811 507194779 1.990000e-05 62.1
74 TraesCS1D01G034900 chr4B 96.774 31 1 0 6154 6184 300699265 300699295 1.200000e-02 52.8
75 TraesCS1D01G034900 chr2B 83.505 485 52 12 6148 6611 775114240 775114717 1.700000e-115 427.0
76 TraesCS1D01G034900 chr2B 83.771 419 49 8 6210 6611 358949793 358950209 4.840000e-101 379.0
77 TraesCS1D01G034900 chr5B 90.189 265 24 2 6306 6568 181464952 181464688 1.770000e-90 344.0
78 TraesCS1D01G034900 chr5B 97.917 48 1 0 6117 6164 543768054 543768007 4.250000e-12 84.2
79 TraesCS1D01G034900 chr5B 84.058 69 4 4 6154 6215 30940216 30940148 7.160000e-05 60.2
80 TraesCS1D01G034900 chr5B 83.824 68 4 2 6155 6215 32015683 32015616 2.580000e-04 58.4
81 TraesCS1D01G034900 chr3B 97.080 137 2 2 3763 3897 572635993 572636129 5.160000e-56 230.0
82 TraesCS1D01G034900 chr3B 93.151 146 8 2 3767 3912 383716619 383716476 5.190000e-51 213.0
83 TraesCS1D01G034900 chr3B 82.166 157 14 5 6469 6611 635855013 635854857 9.000000e-24 122.0
84 TraesCS1D01G034900 chr7A 94.964 139 7 0 3764 3902 173720153 173720291 1.120000e-52 219.0
85 TraesCS1D01G034900 chr7A 95.000 140 5 2 3766 3905 492651234 492651371 1.120000e-52 219.0
86 TraesCS1D01G034900 chr3A 85.612 139 19 1 6306 6444 46341791 46341928 1.920000e-30 145.0
87 TraesCS1D01G034900 chr3A 92.683 41 3 0 6571 6611 508787346 508787306 7.160000e-05 60.2
88 TraesCS1D01G034900 chr7B 100.000 31 0 0 6154 6184 529369488 529369518 2.580000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G034900 chr1D 15358292 15364903 6611 False 12211.0 12211 100.000000 1 6612 1 chr1D.!!$F1 6611
1 TraesCS1D01G034900 chr1D 368917961 368918886 925 False 1445.0 1445 94.759000 1118 2049 1 chr1D.!!$F2 931
2 TraesCS1D01G034900 chr1D 428762536 428763200 664 False 1016.0 1016 94.196000 1381 2049 1 chr1D.!!$F3 668
3 TraesCS1D01G034900 chr1D 394220008 394220672 664 True 1005.0 1005 93.899000 1381 2049 1 chr1D.!!$R3 668
4 TraesCS1D01G034900 chr1D 266859414 266860078 664 True 983.0 983 93.304000 1381 2049 1 chr1D.!!$R2 668
5 TraesCS1D01G034900 chr1D 42320026 42320614 588 False 447.5 455 94.675500 1381 2049 2 chr1D.!!$F5 668
6 TraesCS1D01G034900 chr1D 15345126 15345757 631 False 394.0 455 89.740000 675 1196 2 chr1D.!!$F4 521
7 TraesCS1D01G034900 chr1B 22020759 22025130 4371 True 3509.5 3565 95.743500 1647 6118 2 chr1B.!!$R3 4471
8 TraesCS1D01G034900 chr1B 22901587 22902584 997 False 970.0 970 84.684000 4237 5218 1 chr1B.!!$F1 981
9 TraesCS1D01G034900 chr1B 22865814 22874963 9149 False 844.0 854 89.822286 5426 6084 7 chr1B.!!$F7 658
10 TraesCS1D01G034900 chr1B 22038493 22039543 1050 True 583.4 1090 87.078000 1 976 2 chr1B.!!$R4 975
11 TraesCS1D01G034900 chr1A 16431372 16437359 5987 False 1524.0 2990 88.359800 1 6080 5 chr1A.!!$F1 6079
12 TraesCS1D01G034900 chr6D 55251159 55252089 930 True 1485.0 1485 95.421000 1114 2049 1 chr6D.!!$R1 935
13 TraesCS1D01G034900 chr6D 335166675 335167608 933 True 1456.0 1456 94.798000 1114 2049 1 chr6D.!!$R2 935
14 TraesCS1D01G034900 chr3D 8766256 8767202 946 True 1450.0 1450 94.259000 1096 2049 1 chr3D.!!$R1 953
15 TraesCS1D01G034900 chr3D 490680389 490681053 664 True 1005.0 1005 93.899000 1381 2049 1 chr3D.!!$R2 668
16 TraesCS1D01G034900 chr4D 272817933 272818863 930 True 1441.0 1441 94.569000 1114 2049 1 chr4D.!!$R5 935
17 TraesCS1D01G034900 chr7D 429092140 429092803 663 False 1014.0 1014 94.196000 1381 2049 1 chr7D.!!$F3 668
18 TraesCS1D01G034900 chr2D 465781409 465782073 664 True 1011.0 1011 94.048000 1381 2049 1 chr2D.!!$R1 668
19 TraesCS1D01G034900 chr2D 193903250 193903914 664 False 1000.0 1000 93.750000 1381 2049 1 chr2D.!!$F1 668
20 TraesCS1D01G034900 chr5D 39665285 39665949 664 True 989.0 989 93.452000 1381 2049 1 chr5D.!!$R1 668
21 TraesCS1D01G034900 chrUn 398483731 398484389 658 True 832.0 832 89.697000 5426 6074 1 chrUn.!!$R1 648
22 TraesCS1D01G034900 chrUn 407306466 407307047 581 False 778.0 778 91.081000 5426 5997 1 chrUn.!!$F2 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 572 0.109597 GAGCTTTGCGGGACACAATG 60.110 55.000 0.00 0.00 27.49 2.82 F
667 689 0.253327 GGATCTCGGAGCCCTTTTGT 59.747 55.000 0.00 0.00 31.04 2.83 F
749 771 2.355444 ACAAAACATTTGCCAAGCTTGC 59.645 40.909 21.43 16.17 0.00 4.01 F
1830 2017 2.232941 ACTTCCGTGTGGATAACGACAT 59.767 45.455 0.00 0.00 45.91 3.06 F
2059 2249 1.701704 GCTGGTGCCGAAATTTGAAG 58.298 50.000 0.00 0.00 0.00 3.02 F
3789 4029 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17 F
3894 4134 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 1891 1.003928 TCCTGATCTGCATGCACACTT 59.996 47.619 18.46 1.03 0.00 3.16 R
1813 2000 1.924524 GTGATGTCGTTATCCACACGG 59.075 52.381 0.00 0.00 38.23 4.94 R
2028 2218 2.608988 ACCAGCCTCCACCCTGAG 60.609 66.667 0.00 0.00 0.00 3.35 R
3770 4010 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30 R
3875 4115 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71 R
5552 8765 1.470890 CGTTGGGTTGCACGGATATTT 59.529 47.619 0.00 0.00 32.58 1.40 R
5665 8878 8.995906 GTATAATTTGCTACTTTTACAACTGCG 58.004 33.333 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.288576 GACATTGGACCTGAATTGATATCATAA 57.711 33.333 6.17 0.00 0.00 1.90
74 75 0.405585 ACTTCATTGAGGGGTGGTGG 59.594 55.000 0.55 0.00 0.00 4.61
98 99 4.664150 TGCTCACGACCATACATGAATA 57.336 40.909 0.00 0.00 0.00 1.75
196 197 7.010771 TGTGAGATAGTAGTATAATGGTGCCT 58.989 38.462 0.00 0.00 0.00 4.75
208 209 1.663695 TGGTGCCTCTATTTAAGCGC 58.336 50.000 0.00 0.00 35.03 5.92
222 223 4.576216 TTAAGCGCTAGAAGAGAGATGG 57.424 45.455 12.05 0.00 0.00 3.51
230 231 5.652014 CGCTAGAAGAGAGATGGAATAGGAT 59.348 44.000 0.00 0.00 0.00 3.24
231 232 6.826231 CGCTAGAAGAGAGATGGAATAGGATA 59.174 42.308 0.00 0.00 0.00 2.59
266 271 8.340757 ACAAATGACCCATCCTTTATACCTAAA 58.659 33.333 0.00 0.00 0.00 1.85
290 295 0.615850 AGCAAGGGGTAGAGCTCAAC 59.384 55.000 17.77 4.52 30.05 3.18
354 361 4.465886 ACTCAGCTATTAGACTCGGATGT 58.534 43.478 0.00 0.00 0.00 3.06
485 492 0.317479 CTCGTTTGGGAGAAGGACGT 59.683 55.000 0.00 0.00 36.08 4.34
543 550 2.030185 TGGTTCTTACTCGTCTGCAGAC 60.030 50.000 32.73 32.73 41.47 3.51
565 572 0.109597 GAGCTTTGCGGGACACAATG 60.110 55.000 0.00 0.00 27.49 2.82
589 596 3.993535 CTGAAAGGCCTGCTCACC 58.006 61.111 5.69 0.00 0.00 4.02
591 598 3.435186 GAAAGGCCTGCTCACCGC 61.435 66.667 5.69 0.00 39.77 5.68
592 599 3.909086 GAAAGGCCTGCTCACCGCT 62.909 63.158 5.69 0.00 40.11 5.52
593 600 2.521958 GAAAGGCCTGCTCACCGCTA 62.522 60.000 5.69 0.00 40.11 4.26
594 601 1.915078 AAAGGCCTGCTCACCGCTAT 61.915 55.000 5.69 0.00 40.11 2.97
595 602 1.048724 AAGGCCTGCTCACCGCTATA 61.049 55.000 5.69 0.00 40.11 1.31
596 603 1.301009 GGCCTGCTCACCGCTATAC 60.301 63.158 0.00 0.00 40.11 1.47
597 604 1.661821 GCCTGCTCACCGCTATACG 60.662 63.158 0.00 0.00 40.11 3.06
598 605 1.661821 CCTGCTCACCGCTATACGC 60.662 63.158 0.00 0.00 41.76 4.42
620 642 3.062369 CGACGCGACATGGGTTAAAAATA 59.938 43.478 15.93 0.00 44.90 1.40
667 689 0.253327 GGATCTCGGAGCCCTTTTGT 59.747 55.000 0.00 0.00 31.04 2.83
686 708 3.891324 TGTTTTCGGTTTTAGAATGGCG 58.109 40.909 0.00 0.00 0.00 5.69
693 715 2.817844 GGTTTTAGAATGGCGTGGTTCT 59.182 45.455 4.30 4.30 38.22 3.01
705 727 2.629051 CGTGGTTCTAATTCCTGACCC 58.371 52.381 0.00 0.00 0.00 4.46
711 733 4.403734 GTTCTAATTCCTGACCCAAACCA 58.596 43.478 0.00 0.00 0.00 3.67
749 771 2.355444 ACAAAACATTTGCCAAGCTTGC 59.645 40.909 21.43 16.17 0.00 4.01
916 1077 9.736023 CATAAACCATTTAGCAGGATTTCTTAC 57.264 33.333 0.00 0.00 0.00 2.34
1704 1891 3.449918 TCCATGTCCCAACAGTGATAGA 58.550 45.455 0.00 0.00 39.20 1.98
1720 1907 4.025061 GTGATAGAAGTGTGCATGCAGATC 60.025 45.833 23.41 15.43 0.00 2.75
1830 2017 2.232941 ACTTCCGTGTGGATAACGACAT 59.767 45.455 0.00 0.00 45.91 3.06
1835 2023 2.990514 CGTGTGGATAACGACATCACAA 59.009 45.455 0.00 0.00 43.68 3.33
1979 2169 3.686726 TGTTTGTTTGTTGCCATTGGTTC 59.313 39.130 4.26 0.00 0.00 3.62
1981 2171 3.902881 TGTTTGTTGCCATTGGTTCTT 57.097 38.095 4.26 0.00 0.00 2.52
2000 2190 4.331968 TCTTCCACGGTAATGCTTTCATT 58.668 39.130 0.00 0.00 44.52 2.57
2003 2193 6.431543 TCTTCCACGGTAATGCTTTCATTTTA 59.568 34.615 0.00 0.00 42.51 1.52
2059 2249 1.701704 GCTGGTGCCGAAATTTGAAG 58.298 50.000 0.00 0.00 0.00 3.02
3090 3329 7.195839 AGTTGTAAATCTGTTCTTGCTCTTC 57.804 36.000 0.00 0.00 0.00 2.87
3091 3330 6.767902 AGTTGTAAATCTGTTCTTGCTCTTCA 59.232 34.615 0.00 0.00 0.00 3.02
3293 3532 8.047859 GCTTTACTTTTGTGTTTACGAACATTG 58.952 33.333 0.00 0.00 46.63 2.82
3401 3640 8.746922 ATGTACTTGCATGTTTACAAAATGAG 57.253 30.769 10.85 0.00 0.00 2.90
3770 4010 8.882415 TTATTGATCGGTGTCCTCTTTAATAC 57.118 34.615 0.00 0.00 0.00 1.89
3771 4011 6.540438 TTGATCGGTGTCCTCTTTAATACT 57.460 37.500 0.00 0.00 0.00 2.12
3772 4012 6.145338 TGATCGGTGTCCTCTTTAATACTC 57.855 41.667 0.00 0.00 0.00 2.59
3773 4013 4.996788 TCGGTGTCCTCTTTAATACTCC 57.003 45.455 0.00 0.00 0.00 3.85
3774 4014 3.703052 TCGGTGTCCTCTTTAATACTCCC 59.297 47.826 0.00 0.00 0.00 4.30
3775 4015 3.705072 CGGTGTCCTCTTTAATACTCCCT 59.295 47.826 0.00 0.00 0.00 4.20
3776 4016 4.202131 CGGTGTCCTCTTTAATACTCCCTC 60.202 50.000 0.00 0.00 0.00 4.30
3777 4017 4.101274 GGTGTCCTCTTTAATACTCCCTCC 59.899 50.000 0.00 0.00 0.00 4.30
3778 4018 3.958798 TGTCCTCTTTAATACTCCCTCCG 59.041 47.826 0.00 0.00 0.00 4.63
3779 4019 3.959449 GTCCTCTTTAATACTCCCTCCGT 59.041 47.826 0.00 0.00 0.00 4.69
3780 4020 4.037803 GTCCTCTTTAATACTCCCTCCGTC 59.962 50.000 0.00 0.00 0.00 4.79
3781 4021 3.321396 CCTCTTTAATACTCCCTCCGTCC 59.679 52.174 0.00 0.00 0.00 4.79
3782 4022 3.303049 TCTTTAATACTCCCTCCGTCCC 58.697 50.000 0.00 0.00 0.00 4.46
3783 4023 2.852714 TTAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
3784 4024 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3785 4025 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3786 4026 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3787 4027 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3788 4028 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3789 4029 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3790 4030 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3791 4031 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3792 4032 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3793 4033 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3794 4034 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3795 4035 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3796 4036 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3797 4037 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3798 4038 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3799 4039 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3800 4040 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3801 4041 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3802 4042 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3803 4043 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3804 4044 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3805 4045 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3806 4046 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3814 4054 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3815 4055 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3816 4056 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3817 4057 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3818 4058 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3819 4059 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3836 4076 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
3837 4077 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
3838 4078 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
3839 4079 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
3849 4089 6.627690 ACTAAAACGTGACTTGATACATCG 57.372 37.500 0.00 0.00 0.00 3.84
3850 4090 4.921470 AAAACGTGACTTGATACATCGG 57.079 40.909 0.00 0.00 0.00 4.18
3851 4091 3.587797 AACGTGACTTGATACATCGGT 57.412 42.857 0.00 0.00 0.00 4.69
3852 4092 4.707030 AACGTGACTTGATACATCGGTA 57.293 40.909 0.00 0.00 0.00 4.02
3853 4093 4.913335 ACGTGACTTGATACATCGGTAT 57.087 40.909 0.00 0.00 42.86 2.73
3869 4109 8.693120 ACATCGGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3870 4110 8.569641 ACATCGGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3871 4111 8.568794 CATCGGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3872 4112 8.515695 TCGGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3873 4113 8.622157 TCGGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3874 4114 8.622157 CGGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3881 4121 9.219603 TAGACAAATCTAAGACAAGAATTGTGG 57.780 33.333 11.02 0.00 46.56 4.17
3889 4129 1.453155 CAAGAATTGTGGGACGGAGG 58.547 55.000 0.00 0.00 42.34 4.30
3890 4130 0.328258 AAGAATTGTGGGACGGAGGG 59.672 55.000 0.00 0.00 0.00 4.30
3891 4131 0.546747 AGAATTGTGGGACGGAGGGA 60.547 55.000 0.00 0.00 0.00 4.20
3892 4132 0.107654 GAATTGTGGGACGGAGGGAG 60.108 60.000 0.00 0.00 0.00 4.30
3893 4133 0.840722 AATTGTGGGACGGAGGGAGT 60.841 55.000 0.00 0.00 0.00 3.85
3894 4134 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59
3948 4216 8.770438 AAAACAAAAGTTTGAGCATAAAGACA 57.230 26.923 10.66 0.00 40.55 3.41
3949 4217 7.755582 AACAAAAGTTTGAGCATAAAGACAC 57.244 32.000 10.66 0.00 40.55 3.67
4123 4398 4.555313 GCGCATCAGCAAGCAGAAATATTA 60.555 41.667 0.30 0.00 42.27 0.98
4437 4789 1.683385 AGAGGAAGTTTTTGCACTGCC 59.317 47.619 0.00 0.00 42.56 4.85
4453 4805 0.537143 TGCCGTTCAAGCATGGAACT 60.537 50.000 10.38 0.00 34.69 3.01
4471 4830 1.361543 ACTGGGCCAGGTTAGTCTCTA 59.638 52.381 35.34 0.00 35.51 2.43
4472 4831 2.022918 ACTGGGCCAGGTTAGTCTCTAT 60.023 50.000 35.34 8.78 35.51 1.98
4531 4891 4.760530 TCTATCATTACTGTTGCAGCCT 57.239 40.909 0.00 0.00 34.37 4.58
4678 5038 2.308570 TGGCAGGTATGGTCATCTGTTT 59.691 45.455 0.00 0.00 0.00 2.83
4825 5185 3.142174 GGATATTAGCAAGTGCAGTCCC 58.858 50.000 6.00 0.00 45.16 4.46
4835 5195 1.301716 TGCAGTCCCGAGCAACTTC 60.302 57.895 0.00 0.00 37.90 3.01
4850 5210 4.762251 AGCAACTTCAAATACTCCAAGGTC 59.238 41.667 0.00 0.00 0.00 3.85
4859 5219 0.613777 ACTCCAAGGTCGATTCACCC 59.386 55.000 0.00 0.00 37.09 4.61
5120 5481 4.307432 AGAGTCAACAACAAGGTATCACG 58.693 43.478 0.00 0.00 0.00 4.35
5254 5635 3.084786 GGCAGTGTTTTAGAGATTGGCT 58.915 45.455 0.00 0.00 32.42 4.75
5376 5757 5.731686 GCATGCCTGAACTTAGCTTACATTC 60.732 44.000 6.36 0.00 0.00 2.67
5427 5810 4.110036 TGACAGTGGTGATATTCGAGTG 57.890 45.455 0.00 0.00 0.00 3.51
5552 8765 3.840666 AGAGGTGAAGGAACTAGATTGCA 59.159 43.478 0.00 0.00 38.49 4.08
5678 8891 4.688879 TGTATCACCTCGCAGTTGTAAAAG 59.311 41.667 0.00 0.00 0.00 2.27
6013 13524 4.130118 ACTCACCTTAAAACTGCAGTCTG 58.870 43.478 21.95 8.50 0.00 3.51
6029 13540 3.372206 CAGTCTGTAAATTGCTTCTCCCG 59.628 47.826 0.00 0.00 0.00 5.14
6118 13651 1.571919 GGATGCTGACGACCATACAC 58.428 55.000 0.00 0.00 0.00 2.90
6119 13652 1.137086 GGATGCTGACGACCATACACT 59.863 52.381 0.00 0.00 0.00 3.55
6121 13654 2.933495 TGCTGACGACCATACACTAC 57.067 50.000 0.00 0.00 0.00 2.73
6124 13657 2.479730 GCTGACGACCATACACTACTGG 60.480 54.545 0.00 0.00 38.55 4.00
6125 13658 3.014623 CTGACGACCATACACTACTGGA 58.985 50.000 0.00 0.00 36.35 3.86
6126 13659 3.423749 TGACGACCATACACTACTGGAA 58.576 45.455 0.00 0.00 36.35 3.53
6127 13660 4.021229 TGACGACCATACACTACTGGAAT 58.979 43.478 0.00 0.00 36.35 3.01
6128 13661 4.097437 TGACGACCATACACTACTGGAATC 59.903 45.833 0.00 0.00 36.35 2.52
6129 13662 4.021229 ACGACCATACACTACTGGAATCA 58.979 43.478 0.00 0.00 36.35 2.57
6130 13663 4.098044 ACGACCATACACTACTGGAATCAG 59.902 45.833 0.00 0.00 46.10 2.90
6142 13675 2.554032 CTGGAATCAGTTTCTTTGCCGT 59.446 45.455 0.00 0.00 36.30 5.68
6143 13676 2.552315 TGGAATCAGTTTCTTTGCCGTC 59.448 45.455 0.00 0.00 34.56 4.79
6145 13678 1.156736 ATCAGTTTCTTTGCCGTCCG 58.843 50.000 0.00 0.00 0.00 4.79
6146 13679 1.082104 CAGTTTCTTTGCCGTCCGC 60.082 57.895 0.00 0.00 38.31 5.54
6147 13680 2.254350 GTTTCTTTGCCGTCCGCC 59.746 61.111 0.00 0.00 36.24 6.13
6148 13681 2.203224 TTTCTTTGCCGTCCGCCA 60.203 55.556 0.00 0.00 36.24 5.69
6149 13682 1.602323 TTTCTTTGCCGTCCGCCAT 60.602 52.632 0.00 0.00 36.24 4.40
6150 13683 1.861542 TTTCTTTGCCGTCCGCCATG 61.862 55.000 0.00 0.00 36.24 3.66
6151 13684 3.814268 CTTTGCCGTCCGCCATGG 61.814 66.667 7.63 7.63 36.24 3.66
6152 13685 4.652131 TTTGCCGTCCGCCATGGT 62.652 61.111 14.67 0.00 39.52 3.55
6162 13695 2.988684 GCCATGGTGGACGGCAAA 60.989 61.111 14.67 0.00 45.52 3.68
6163 13696 2.993471 GCCATGGTGGACGGCAAAG 61.993 63.158 14.67 0.00 45.52 2.77
6164 13697 1.603455 CCATGGTGGACGGCAAAGT 60.603 57.895 2.57 0.00 40.96 2.66
6165 13698 1.586154 CCATGGTGGACGGCAAAGTC 61.586 60.000 2.57 0.00 40.96 3.01
6178 13711 2.358939 CAAAGTCCTTTGCCATCAGC 57.641 50.000 6.82 0.00 42.66 4.26
6179 13712 1.067354 CAAAGTCCTTTGCCATCAGCC 60.067 52.381 6.82 0.00 42.66 4.85
6180 13713 0.112995 AAGTCCTTTGCCATCAGCCA 59.887 50.000 0.00 0.00 42.71 4.75
6181 13714 0.323178 AGTCCTTTGCCATCAGCCAG 60.323 55.000 0.00 0.00 42.71 4.85
6182 13715 1.679977 TCCTTTGCCATCAGCCAGC 60.680 57.895 0.00 0.00 42.71 4.85
6184 13717 3.695022 CTTTGCCATCAGCCAGCGC 62.695 63.158 0.00 0.00 42.71 5.92
6188 13721 3.506096 CCATCAGCCAGCGCACTG 61.506 66.667 11.47 14.53 44.05 3.66
6189 13722 2.745100 CATCAGCCAGCGCACTGT 60.745 61.111 20.09 8.83 42.81 3.55
6190 13723 2.435586 ATCAGCCAGCGCACTGTC 60.436 61.111 20.09 0.00 42.81 3.51
6191 13724 3.965539 ATCAGCCAGCGCACTGTCC 62.966 63.158 20.09 1.77 42.81 4.02
6196 13729 3.108289 CAGCGCACTGTCCGTCTG 61.108 66.667 11.47 0.00 39.22 3.51
6198 13731 2.355837 GCGCACTGTCCGTCTGAA 60.356 61.111 0.30 0.00 0.00 3.02
6199 13732 2.658707 GCGCACTGTCCGTCTGAAC 61.659 63.158 0.30 0.00 0.00 3.18
6210 14183 3.611674 TCTGAACGAGTGCCGGCA 61.612 61.111 29.03 29.03 43.93 5.69
6212 14185 2.203084 TGAACGAGTGCCGGCAAA 60.203 55.556 34.66 6.51 43.93 3.68
6215 14188 3.469863 AACGAGTGCCGGCAAAGGA 62.470 57.895 34.66 4.50 43.93 3.36
6216 14189 2.436646 CGAGTGCCGGCAAAGGAT 60.437 61.111 34.66 15.14 33.91 3.24
6217 14190 2.040544 CGAGTGCCGGCAAAGGATT 61.041 57.895 34.66 12.68 33.91 3.01
6221 14194 2.125952 GCCGGCAAAGGATTGTGC 60.126 61.111 24.80 0.00 38.85 4.57
6225 14198 4.868195 GCAAAGGATTGTGCCGTC 57.132 55.556 0.00 0.00 38.85 4.79
6227 14200 1.501741 CAAAGGATTGTGCCGTCCG 59.498 57.895 0.00 0.00 39.54 4.79
6228 14201 2.332654 AAAGGATTGTGCCGTCCGC 61.333 57.895 0.00 0.00 39.54 5.54
6229 14202 4.778143 AGGATTGTGCCGTCCGCC 62.778 66.667 0.00 0.00 39.54 6.13
6245 14218 2.829003 CCGACGGAGGCTAGCAGA 60.829 66.667 18.24 0.00 0.00 4.26
6247 14220 2.409651 GACGGAGGCTAGCAGACG 59.590 66.667 18.24 18.37 0.00 4.18
6248 14221 3.127352 GACGGAGGCTAGCAGACGG 62.127 68.421 18.24 12.89 0.00 4.79
6249 14222 4.577246 CGGAGGCTAGCAGACGGC 62.577 72.222 18.24 0.00 45.30 5.68
6260 14233 0.379669 GCAGACGGCAAAGATCATGG 59.620 55.000 0.00 0.00 43.97 3.66
6262 14235 1.667724 CAGACGGCAAAGATCATGGAC 59.332 52.381 0.00 0.00 0.00 4.02
6265 14238 1.729881 GGCAAAGATCATGGACGGC 59.270 57.895 0.00 0.00 0.00 5.68
6266 14239 1.031571 GGCAAAGATCATGGACGGCA 61.032 55.000 0.00 0.00 0.00 5.69
6267 14240 0.379669 GCAAAGATCATGGACGGCAG 59.620 55.000 0.00 0.00 0.00 4.85
6270 14243 0.107508 AAGATCATGGACGGCAGTGG 60.108 55.000 0.00 0.00 0.00 4.00
6271 14244 1.524621 GATCATGGACGGCAGTGGG 60.525 63.158 0.00 0.00 0.00 4.61
6272 14245 2.947938 GATCATGGACGGCAGTGGGG 62.948 65.000 0.00 0.00 0.00 4.96
6273 14246 4.033776 CATGGACGGCAGTGGGGT 62.034 66.667 0.00 0.00 0.00 4.95
6274 14247 4.033776 ATGGACGGCAGTGGGGTG 62.034 66.667 0.00 0.00 0.00 4.61
6281 14254 4.351054 GCAGTGGGGTGGGGTGAG 62.351 72.222 0.00 0.00 0.00 3.51
6282 14255 2.529136 CAGTGGGGTGGGGTGAGA 60.529 66.667 0.00 0.00 0.00 3.27
6284 14257 4.035102 GTGGGGTGGGGTGAGAGC 62.035 72.222 0.00 0.00 0.00 4.09
6285 14258 4.270153 TGGGGTGGGGTGAGAGCT 62.270 66.667 0.00 0.00 0.00 4.09
6287 14260 2.930562 GGGTGGGGTGAGAGCTGT 60.931 66.667 0.00 0.00 0.00 4.40
6288 14261 2.529744 GGGTGGGGTGAGAGCTGTT 61.530 63.158 0.00 0.00 0.00 3.16
6289 14262 1.198759 GGGTGGGGTGAGAGCTGTTA 61.199 60.000 0.00 0.00 0.00 2.41
6290 14263 0.250513 GGTGGGGTGAGAGCTGTTAG 59.749 60.000 0.00 0.00 0.00 2.34
6292 14265 0.909610 TGGGGTGAGAGCTGTTAGGG 60.910 60.000 0.00 0.00 0.00 3.53
6293 14266 1.627297 GGGGTGAGAGCTGTTAGGGG 61.627 65.000 0.00 0.00 0.00 4.79
6294 14267 0.910088 GGGTGAGAGCTGTTAGGGGT 60.910 60.000 0.00 0.00 0.00 4.95
6295 14268 0.984995 GGTGAGAGCTGTTAGGGGTT 59.015 55.000 0.00 0.00 0.00 4.11
6296 14269 2.185387 GGTGAGAGCTGTTAGGGGTTA 58.815 52.381 0.00 0.00 0.00 2.85
6297 14270 2.570302 GGTGAGAGCTGTTAGGGGTTAA 59.430 50.000 0.00 0.00 0.00 2.01
6299 14272 2.232941 TGAGAGCTGTTAGGGGTTAACG 59.767 50.000 0.00 0.00 43.78 3.18
6300 14273 2.494870 GAGAGCTGTTAGGGGTTAACGA 59.505 50.000 0.00 0.00 43.78 3.85
6301 14274 2.233186 AGAGCTGTTAGGGGTTAACGAC 59.767 50.000 0.00 0.00 43.78 4.34
6303 14276 1.337167 GCTGTTAGGGGTTAACGACGT 60.337 52.381 0.00 0.00 43.78 4.34
6304 14277 2.331194 CTGTTAGGGGTTAACGACGTG 58.669 52.381 0.00 0.00 43.78 4.49
6306 14279 0.968405 TTAGGGGTTAACGACGTGCT 59.032 50.000 0.00 0.00 0.00 4.40
6307 14280 0.968405 TAGGGGTTAACGACGTGCTT 59.032 50.000 0.00 0.00 0.00 3.91
6309 14282 0.236449 GGGGTTAACGACGTGCTTTG 59.764 55.000 0.00 0.00 0.00 2.77
6311 14284 0.385098 GGTTAACGACGTGCTTTGCC 60.385 55.000 0.00 0.00 0.00 4.52
6312 14285 0.720173 GTTAACGACGTGCTTTGCCG 60.720 55.000 0.00 0.00 0.00 5.69
6314 14287 1.550659 TAACGACGTGCTTTGCCGTC 61.551 55.000 0.00 17.13 43.32 4.79
6315 14288 3.036084 CGACGTGCTTTGCCGTCT 61.036 61.111 21.27 0.26 43.97 4.18
6316 14289 2.551270 GACGTGCTTTGCCGTCTG 59.449 61.111 18.69 0.00 43.37 3.51
6317 14290 3.579626 GACGTGCTTTGCCGTCTGC 62.580 63.158 18.69 0.00 43.37 4.26
6318 14291 3.349006 CGTGCTTTGCCGTCTGCT 61.349 61.111 0.00 0.00 42.00 4.24
6329 14302 2.643272 GTCTGCTGACGGACGACA 59.357 61.111 8.06 0.00 42.17 4.35
6330 14303 1.007734 GTCTGCTGACGGACGACAA 60.008 57.895 8.06 0.00 42.17 3.18
6331 14304 0.596600 GTCTGCTGACGGACGACAAA 60.597 55.000 8.06 0.00 42.17 2.83
6333 14306 0.318699 CTGCTGACGGACGACAAAGA 60.319 55.000 0.00 0.00 0.00 2.52
6334 14307 0.318699 TGCTGACGGACGACAAAGAG 60.319 55.000 0.00 0.00 0.00 2.85
6335 14308 1.618640 GCTGACGGACGACAAAGAGC 61.619 60.000 0.00 0.00 0.00 4.09
6336 14309 0.039074 CTGACGGACGACAAAGAGCT 60.039 55.000 0.00 0.00 0.00 4.09
6337 14310 0.039437 TGACGGACGACAAAGAGCTC 60.039 55.000 5.27 5.27 0.00 4.09
6338 14311 0.039437 GACGGACGACAAAGAGCTCA 60.039 55.000 17.77 0.00 0.00 4.26
6339 14312 0.039074 ACGGACGACAAAGAGCTCAG 60.039 55.000 17.77 7.90 0.00 3.35
6340 14313 1.347817 CGGACGACAAAGAGCTCAGC 61.348 60.000 17.77 0.00 0.00 4.26
6341 14314 0.037790 GGACGACAAAGAGCTCAGCT 60.038 55.000 17.77 0.00 43.88 4.24
6344 14317 0.795085 CGACAAAGAGCTCAGCTTGG 59.205 55.000 17.77 1.45 39.88 3.61
6345 14318 0.520847 GACAAAGAGCTCAGCTTGGC 59.479 55.000 17.77 14.25 39.88 4.52
6346 14319 0.892814 ACAAAGAGCTCAGCTTGGCC 60.893 55.000 17.77 0.00 39.88 5.36
6347 14320 0.892358 CAAAGAGCTCAGCTTGGCCA 60.892 55.000 17.77 0.00 39.88 5.36
6379 14352 2.268920 CCACGTGGCCAGCTATGT 59.731 61.111 24.02 0.00 0.00 2.29
6380 14353 1.815421 CCACGTGGCCAGCTATGTC 60.815 63.158 24.02 0.00 0.00 3.06
6381 14354 2.167219 CACGTGGCCAGCTATGTCG 61.167 63.158 5.11 6.95 0.00 4.35
6382 14355 2.184322 CGTGGCCAGCTATGTCGT 59.816 61.111 5.11 0.00 0.00 4.34
6383 14356 1.878522 CGTGGCCAGCTATGTCGTC 60.879 63.158 5.11 0.00 0.00 4.20
6384 14357 1.517832 GTGGCCAGCTATGTCGTCT 59.482 57.895 5.11 0.00 0.00 4.18
6385 14358 0.807667 GTGGCCAGCTATGTCGTCTG 60.808 60.000 5.11 0.00 0.00 3.51
6387 14360 1.884926 GCCAGCTATGTCGTCTGCC 60.885 63.158 0.00 0.00 0.00 4.85
6388 14361 1.517361 CCAGCTATGTCGTCTGCCA 59.483 57.895 0.00 0.00 0.00 4.92
6390 14363 1.142748 AGCTATGTCGTCTGCCAGC 59.857 57.895 0.00 0.00 0.00 4.85
6391 14364 2.233654 GCTATGTCGTCTGCCAGCG 61.234 63.158 2.73 2.73 0.00 5.18
6392 14365 1.589993 CTATGTCGTCTGCCAGCGG 60.590 63.158 8.30 0.00 0.00 5.52
6394 14367 2.279502 TATGTCGTCTGCCAGCGGAC 62.280 60.000 19.53 19.53 45.97 4.79
6399 14372 3.611674 TCTGCCAGCGGACGACAA 61.612 61.111 0.00 0.00 0.00 3.18
6400 14373 2.664851 CTGCCAGCGGACGACAAA 60.665 61.111 0.00 0.00 0.00 2.83
6401 14374 2.664851 TGCCAGCGGACGACAAAG 60.665 61.111 0.00 0.00 0.00 2.77
6402 14375 2.357034 GCCAGCGGACGACAAAGA 60.357 61.111 0.00 0.00 0.00 2.52
6403 14376 2.383527 GCCAGCGGACGACAAAGAG 61.384 63.158 0.00 0.00 0.00 2.85
6404 14377 2.383527 CCAGCGGACGACAAAGAGC 61.384 63.158 0.00 0.00 0.00 4.09
6405 14378 1.373497 CAGCGGACGACAAAGAGCT 60.373 57.895 0.00 0.00 35.06 4.09
6406 14379 0.946221 CAGCGGACGACAAAGAGCTT 60.946 55.000 0.00 0.00 32.05 3.74
6407 14380 0.249911 AGCGGACGACAAAGAGCTTT 60.250 50.000 0.00 0.00 0.00 3.51
6422 14395 4.636249 AGAGCTTTGAATCTTTGTCGTCT 58.364 39.130 0.00 0.00 0.00 4.18
6423 14396 4.450419 AGAGCTTTGAATCTTTGTCGTCTG 59.550 41.667 0.00 0.00 0.00 3.51
6424 14397 3.058639 AGCTTTGAATCTTTGTCGTCTGC 60.059 43.478 0.00 0.00 0.00 4.26
6425 14398 3.058639 GCTTTGAATCTTTGTCGTCTGCT 60.059 43.478 0.00 0.00 0.00 4.24
6426 14399 4.461405 CTTTGAATCTTTGTCGTCTGCTG 58.539 43.478 0.00 0.00 0.00 4.41
6427 14400 2.416747 TGAATCTTTGTCGTCTGCTGG 58.583 47.619 0.00 0.00 0.00 4.85
6428 14401 1.129437 GAATCTTTGTCGTCTGCTGGC 59.871 52.381 0.00 0.00 0.00 4.85
6429 14402 0.035317 ATCTTTGTCGTCTGCTGGCA 59.965 50.000 0.00 0.00 0.00 4.92
6444 14417 3.275338 GCAGACGGCATAGCTGGC 61.275 66.667 0.00 0.00 44.62 4.85
6445 14418 2.590007 CAGACGGCATAGCTGGCC 60.590 66.667 18.48 18.48 45.60 5.36
6446 14419 3.866582 AGACGGCATAGCTGGCCC 61.867 66.667 21.39 11.18 45.60 5.80
6453 14426 1.811860 CATAGCTGGCCCTGTTTGC 59.188 57.895 0.00 0.00 0.00 3.68
6459 14432 2.118294 GGCCCTGTTTGCCCTTCT 59.882 61.111 0.00 0.00 43.33 2.85
6460 14433 1.533994 GGCCCTGTTTGCCCTTCTT 60.534 57.895 0.00 0.00 43.33 2.52
6461 14434 0.251608 GGCCCTGTTTGCCCTTCTTA 60.252 55.000 0.00 0.00 43.33 2.10
6462 14435 0.888619 GCCCTGTTTGCCCTTCTTAC 59.111 55.000 0.00 0.00 0.00 2.34
6463 14436 1.547901 GCCCTGTTTGCCCTTCTTACT 60.548 52.381 0.00 0.00 0.00 2.24
6465 14438 2.558359 CCCTGTTTGCCCTTCTTACTTG 59.442 50.000 0.00 0.00 0.00 3.16
6467 14440 4.394729 CCTGTTTGCCCTTCTTACTTGTA 58.605 43.478 0.00 0.00 0.00 2.41
6468 14441 4.215613 CCTGTTTGCCCTTCTTACTTGTAC 59.784 45.833 0.00 0.00 0.00 2.90
6469 14442 4.783055 TGTTTGCCCTTCTTACTTGTACA 58.217 39.130 0.00 0.00 0.00 2.90
6470 14443 4.577283 TGTTTGCCCTTCTTACTTGTACAC 59.423 41.667 0.00 0.00 0.00 2.90
6472 14445 2.366266 TGCCCTTCTTACTTGTACACGT 59.634 45.455 10.14 10.14 0.00 4.49
6473 14446 3.181463 TGCCCTTCTTACTTGTACACGTT 60.181 43.478 10.56 0.00 0.00 3.99
6475 14448 3.185797 CCCTTCTTACTTGTACACGTTGC 59.814 47.826 10.56 0.00 0.00 4.17
6476 14449 3.185797 CCTTCTTACTTGTACACGTTGCC 59.814 47.826 10.56 0.00 0.00 4.52
6477 14450 2.396601 TCTTACTTGTACACGTTGCCG 58.603 47.619 10.56 0.00 40.83 5.69
6479 14452 1.769733 TACTTGTACACGTTGCCGTC 58.230 50.000 10.56 0.00 46.28 4.79
6481 14454 0.506932 CTTGTACACGTTGCCGTCTG 59.493 55.000 0.00 0.00 46.28 3.51
6482 14455 1.492319 TTGTACACGTTGCCGTCTGC 61.492 55.000 0.00 0.00 46.28 4.26
6483 14456 1.663702 GTACACGTTGCCGTCTGCT 60.664 57.895 0.00 0.00 46.28 4.24
6497 14470 2.462456 TCTGCTGGCAGACTACAAAG 57.538 50.000 20.86 3.10 46.80 2.77
6498 14471 1.694150 TCTGCTGGCAGACTACAAAGT 59.306 47.619 20.86 0.00 46.80 2.66
6499 14472 1.802960 CTGCTGGCAGACTACAAAGTG 59.197 52.381 20.86 0.00 46.30 3.16
6500 14473 1.416030 TGCTGGCAGACTACAAAGTGA 59.584 47.619 20.86 0.00 35.56 3.41
6501 14474 2.038952 TGCTGGCAGACTACAAAGTGAT 59.961 45.455 20.86 0.00 35.56 3.06
6502 14475 2.675348 GCTGGCAGACTACAAAGTGATC 59.325 50.000 20.86 0.00 35.56 2.92
6503 14476 3.866066 GCTGGCAGACTACAAAGTGATCA 60.866 47.826 20.86 0.00 35.56 2.92
6504 14477 4.318332 CTGGCAGACTACAAAGTGATCAA 58.682 43.478 9.42 0.00 35.56 2.57
6505 14478 4.713553 TGGCAGACTACAAAGTGATCAAA 58.286 39.130 0.00 0.00 35.56 2.69
6507 14480 6.472016 TGGCAGACTACAAAGTGATCAAATA 58.528 36.000 0.00 0.00 35.56 1.40
6508 14481 6.595326 TGGCAGACTACAAAGTGATCAAATAG 59.405 38.462 0.00 0.00 35.56 1.73
6509 14482 6.037610 GGCAGACTACAAAGTGATCAAATAGG 59.962 42.308 0.00 0.00 35.56 2.57
6510 14483 6.457528 GCAGACTACAAAGTGATCAAATAGGC 60.458 42.308 0.00 0.00 35.56 3.93
6511 14484 6.595326 CAGACTACAAAGTGATCAAATAGGCA 59.405 38.462 0.00 0.00 35.56 4.75
6512 14485 6.820656 AGACTACAAAGTGATCAAATAGGCAG 59.179 38.462 0.00 0.00 35.56 4.85
6514 14487 3.445096 ACAAAGTGATCAAATAGGCAGCC 59.555 43.478 1.84 1.84 0.00 4.85
6515 14488 2.355010 AGTGATCAAATAGGCAGCCC 57.645 50.000 8.22 0.00 0.00 5.19
6516 14489 1.565759 AGTGATCAAATAGGCAGCCCA 59.434 47.619 8.22 0.00 0.00 5.36
6520 14493 0.698238 TCAAATAGGCAGCCCAGTGT 59.302 50.000 8.22 0.00 0.00 3.55
6521 14494 1.075374 TCAAATAGGCAGCCCAGTGTT 59.925 47.619 8.22 0.00 0.00 3.32
6522 14495 1.474077 CAAATAGGCAGCCCAGTGTTC 59.526 52.381 8.22 0.00 0.00 3.18
6524 14497 1.926426 ATAGGCAGCCCAGTGTTCCC 61.926 60.000 8.22 0.00 0.00 3.97
6526 14499 4.643387 GCAGCCCAGTGTTCCCGT 62.643 66.667 0.00 0.00 0.00 5.28
6528 14501 2.113139 AGCCCAGTGTTCCCGTTG 59.887 61.111 0.00 0.00 0.00 4.10
6529 14502 3.670377 GCCCAGTGTTCCCGTTGC 61.670 66.667 0.00 0.00 0.00 4.17
6530 14503 2.203280 CCCAGTGTTCCCGTTGCA 60.203 61.111 0.00 0.00 0.00 4.08
6531 14504 2.551912 CCCAGTGTTCCCGTTGCAC 61.552 63.158 0.00 0.00 0.00 4.57
6532 14505 1.821759 CCAGTGTTCCCGTTGCACA 60.822 57.895 0.00 0.00 35.75 4.57
6533 14506 1.648720 CAGTGTTCCCGTTGCACAG 59.351 57.895 0.00 0.00 35.75 3.66
6534 14507 1.525995 AGTGTTCCCGTTGCACAGG 60.526 57.895 0.00 0.00 35.75 4.00
6536 14509 0.533308 GTGTTCCCGTTGCACAGGTA 60.533 55.000 5.97 0.00 33.70 3.08
6537 14510 0.250124 TGTTCCCGTTGCACAGGTAG 60.250 55.000 5.97 0.00 0.00 3.18
6539 14512 1.764571 TTCCCGTTGCACAGGTAGCT 61.765 55.000 5.97 0.00 0.00 3.32
6541 14514 0.739813 CCCGTTGCACAGGTAGCTAC 60.740 60.000 15.88 15.88 35.01 3.58
6550 14523 2.186125 GGTAGCTACCACGTGGCC 59.814 66.667 33.64 21.60 45.73 5.36
6551 14524 2.356780 GGTAGCTACCACGTGGCCT 61.357 63.158 33.64 26.93 45.73 5.19
6552 14525 1.141234 GTAGCTACCACGTGGCCTC 59.859 63.158 34.26 21.56 40.93 4.70
6553 14526 1.000019 TAGCTACCACGTGGCCTCT 60.000 57.895 34.26 26.71 40.93 3.69
6555 14528 1.003718 GCTACCACGTGGCCTCTTT 60.004 57.895 34.26 16.31 39.32 2.52
6556 14529 1.298859 GCTACCACGTGGCCTCTTTG 61.299 60.000 34.26 16.01 39.32 2.77
6557 14530 1.298859 CTACCACGTGGCCTCTTTGC 61.299 60.000 34.26 0.00 39.32 3.68
6564 14537 3.435186 GGCCTCTTTGCCGTCTGC 61.435 66.667 0.00 0.00 42.54 4.26
6565 14538 2.359230 GCCTCTTTGCCGTCTGCT 60.359 61.111 0.00 0.00 42.00 4.24
6566 14539 1.079127 GCCTCTTTGCCGTCTGCTA 60.079 57.895 0.00 0.00 42.00 3.49
6567 14540 1.086634 GCCTCTTTGCCGTCTGCTAG 61.087 60.000 0.00 0.00 42.00 3.42
6568 14541 0.532573 CCTCTTTGCCGTCTGCTAGA 59.467 55.000 0.00 0.00 42.00 2.43
6569 14542 1.470632 CCTCTTTGCCGTCTGCTAGAG 60.471 57.143 0.00 10.08 43.31 2.43
6570 14543 0.108615 TCTTTGCCGTCTGCTAGAGC 60.109 55.000 0.00 0.00 42.00 4.09
6574 14547 0.390340 TGCCGTCTGCTAGAGCTTTG 60.390 55.000 2.72 0.00 42.66 2.77
6575 14548 1.700600 GCCGTCTGCTAGAGCTTTGC 61.701 60.000 2.72 0.00 42.66 3.68
6576 14549 1.086634 CCGTCTGCTAGAGCTTTGCC 61.087 60.000 2.72 0.00 42.66 4.52
6577 14550 1.416813 CGTCTGCTAGAGCTTTGCCG 61.417 60.000 2.72 0.00 42.66 5.69
6580 14553 1.079127 TGCTAGAGCTTTGCCGTCC 60.079 57.895 2.72 0.00 42.66 4.79
6581 14554 1.079127 GCTAGAGCTTTGCCGTCCA 60.079 57.895 0.00 0.00 38.21 4.02
6582 14555 1.362406 GCTAGAGCTTTGCCGTCCAC 61.362 60.000 0.00 0.00 38.21 4.02
6584 14557 0.037326 TAGAGCTTTGCCGTCCACTG 60.037 55.000 0.00 0.00 0.00 3.66
6585 14558 2.281761 AGCTTTGCCGTCCACTGG 60.282 61.111 0.00 0.00 0.00 4.00
6600 14573 2.032528 TGGCAGACGGCAAAGAGG 59.967 61.111 0.00 0.00 46.20 3.69
6605 14578 1.202533 GCAGACGGCAAAGAGGCTATA 60.203 52.381 0.00 0.00 43.97 1.31
6606 14579 2.548920 GCAGACGGCAAAGAGGCTATAT 60.549 50.000 0.00 0.00 43.97 0.86
6607 14580 3.306088 GCAGACGGCAAAGAGGCTATATA 60.306 47.826 0.00 0.00 43.97 0.86
6608 14581 4.621747 GCAGACGGCAAAGAGGCTATATAT 60.622 45.833 0.00 0.00 43.97 0.86
6609 14582 5.105752 CAGACGGCAAAGAGGCTATATATC 58.894 45.833 0.00 0.00 41.46 1.63
6610 14583 4.160626 AGACGGCAAAGAGGCTATATATCC 59.839 45.833 0.00 0.00 41.46 2.59
6611 14584 3.838317 ACGGCAAAGAGGCTATATATCCA 59.162 43.478 5.45 0.00 41.46 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.038017 CCCCTCAATGAAGTAGATACATGGTAT 60.038 40.741 0.00 0.00 0.00 2.73
44 45 5.072329 CCCCTCAATGAAGTAGATACATGGT 59.928 44.000 0.00 0.00 0.00 3.55
45 46 5.072329 ACCCCTCAATGAAGTAGATACATGG 59.928 44.000 0.00 0.00 0.00 3.66
74 75 2.138320 CATGTATGGTCGTGAGCATCC 58.862 52.381 16.99 7.65 45.37 3.51
115 116 5.299531 TGCTCTTATGTAGTTCGATACTGCT 59.700 40.000 13.61 5.75 39.88 4.24
119 120 6.678878 TGGATGCTCTTATGTAGTTCGATAC 58.321 40.000 0.00 0.00 0.00 2.24
150 151 1.614903 CCACCATGTGATGCAACAACT 59.385 47.619 0.00 0.00 35.23 3.16
180 181 9.152595 GCTTAAATAGAGGCACCATTATACTAC 57.847 37.037 0.00 0.00 0.00 2.73
183 184 6.402226 GCGCTTAAATAGAGGCACCATTATAC 60.402 42.308 0.00 0.00 0.00 1.47
196 197 7.308891 CCATCTCTCTTCTAGCGCTTAAATAGA 60.309 40.741 18.68 15.83 0.00 1.98
239 240 7.460214 AGGTATAAAGGATGGGTCATTTGTA 57.540 36.000 0.00 0.00 38.64 2.41
240 241 6.341408 AGGTATAAAGGATGGGTCATTTGT 57.659 37.500 0.00 0.00 38.64 2.83
241 242 8.760980 TTTAGGTATAAAGGATGGGTCATTTG 57.239 34.615 0.00 0.00 38.64 2.32
258 263 2.358195 CCCCTTGCTTGGCTTTAGGTAT 60.358 50.000 0.00 0.00 0.00 2.73
266 271 1.994463 CTCTACCCCTTGCTTGGCT 59.006 57.895 0.00 0.00 0.00 4.75
337 344 6.915349 AGTAATCACATCCGAGTCTAATAGC 58.085 40.000 0.00 0.00 0.00 2.97
354 361 9.554724 GTTCAAAATAGCATCGAAAAGTAATCA 57.445 29.630 0.00 0.00 0.00 2.57
390 397 3.484407 CTGATGCTTCCAAATCCTAGGG 58.516 50.000 9.46 0.00 0.00 3.53
543 550 4.697756 TGTCCCGCAAAGCTCCCG 62.698 66.667 0.00 0.00 0.00 5.14
548 555 0.527565 ATCATTGTGTCCCGCAAAGC 59.472 50.000 0.00 0.00 37.41 3.51
565 572 1.034292 GCAGGCCTTTCAGGTCCATC 61.034 60.000 0.00 0.00 42.20 3.51
597 604 1.628447 TTTAACCCATGTCGCGTCGC 61.628 55.000 7.29 7.29 0.00 5.19
598 605 0.791422 TTTTAACCCATGTCGCGTCG 59.209 50.000 5.77 0.00 0.00 5.12
599 606 2.973419 TTTTTAACCCATGTCGCGTC 57.027 45.000 5.77 0.00 0.00 5.19
600 607 4.636648 TCATATTTTTAACCCATGTCGCGT 59.363 37.500 5.77 0.00 0.00 6.01
601 608 5.163302 TCATATTTTTAACCCATGTCGCG 57.837 39.130 0.00 0.00 0.00 5.87
602 609 7.871853 ACTATCATATTTTTAACCCATGTCGC 58.128 34.615 0.00 0.00 0.00 5.19
620 642 8.556213 TCCAACGCTTTAAAGTAAACTATCAT 57.444 30.769 16.38 0.00 0.00 2.45
643 665 2.641277 GGGCTCCGAGATCCGATCC 61.641 68.421 4.67 0.00 41.76 3.36
667 689 3.304794 CCACGCCATTCTAAAACCGAAAA 60.305 43.478 0.00 0.00 0.00 2.29
686 708 3.713826 TGGGTCAGGAATTAGAACCAC 57.286 47.619 7.51 0.00 46.24 4.16
693 715 3.898741 GGTTTGGTTTGGGTCAGGAATTA 59.101 43.478 0.00 0.00 0.00 1.40
705 727 3.129638 TCAAAGAGGTTCGGTTTGGTTTG 59.870 43.478 0.00 0.00 32.96 2.93
711 733 5.165676 GTTTTGTTCAAAGAGGTTCGGTTT 58.834 37.500 0.00 0.00 0.00 3.27
916 1077 3.081804 GGTGGTACCACTGAGATTTTGG 58.918 50.000 37.24 0.00 45.52 3.28
1388 1574 6.303259 GCACGAAATTTCAGAAATCACACTAC 59.697 38.462 17.99 0.00 0.00 2.73
1389 1575 6.204688 AGCACGAAATTTCAGAAATCACACTA 59.795 34.615 17.99 0.00 0.00 2.74
1704 1891 1.003928 TCCTGATCTGCATGCACACTT 59.996 47.619 18.46 1.03 0.00 3.16
1720 1907 6.697019 CCTATTTGTTTTTCAACACTGTCCTG 59.303 38.462 0.00 0.00 42.87 3.86
1813 2000 1.924524 GTGATGTCGTTATCCACACGG 59.075 52.381 0.00 0.00 38.23 4.94
1979 2169 4.701956 AATGAAAGCATTACCGTGGAAG 57.298 40.909 0.00 0.00 42.73 3.46
1981 2171 6.767524 ATAAAATGAAAGCATTACCGTGGA 57.232 33.333 0.00 0.00 43.71 4.02
2028 2218 2.608988 ACCAGCCTCCACCCTGAG 60.609 66.667 0.00 0.00 0.00 3.35
2189 2387 4.281657 GGTTAGCCCTTTGATCCTTTGAT 58.718 43.478 0.00 0.00 0.00 2.57
2190 2388 3.697166 GGTTAGCCCTTTGATCCTTTGA 58.303 45.455 0.00 0.00 0.00 2.69
2205 2403 5.637810 GCTTTAGTTCAAAAATGGGGTTAGC 59.362 40.000 0.00 0.00 0.00 3.09
2508 2706 7.967303 ACTCGTATACTACTAAAACAGAGCAAC 59.033 37.037 0.56 0.00 0.00 4.17
3068 3276 6.767902 ACTGAAGAGCAAGAACAGATTTACAA 59.232 34.615 0.00 0.00 33.53 2.41
3090 3329 8.893727 CCTTCCATACTTTTATCCAGTTAACTG 58.106 37.037 25.79 25.79 43.40 3.16
3091 3330 8.612145 ACCTTCCATACTTTTATCCAGTTAACT 58.388 33.333 1.12 1.12 0.00 2.24
3401 3640 9.239002 GTAATGCGTCTATAAGATCATATCCAC 57.761 37.037 0.00 0.00 0.00 4.02
3770 4010 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3771 4011 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3772 4012 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3773 4013 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3774 4014 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3775 4015 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3776 4016 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3777 4017 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3778 4018 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3779 4019 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3780 4020 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3788 4028 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3789 4029 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3790 4030 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3791 4031 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3792 4032 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3793 4033 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3810 4050 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
3811 4051 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
3812 4052 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
3813 4053 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
3823 4063 8.804743 CGATGTATCAAGTCACGTTTTAGTATT 58.195 33.333 0.00 0.00 0.00 1.89
3824 4064 7.434307 CCGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
3825 4065 6.748658 CCGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
3826 4066 5.575606 CCGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
3827 4067 5.575606 ACCGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
3828 4068 5.472148 ACCGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
3829 4069 4.312443 ACCGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3830 4070 3.921677 ACCGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3831 4071 3.587797 ACCGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3832 4072 4.913335 ATACCGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 31.99 4.49
3843 4083 9.788889 TCTTAGATTTGTCTAGATACCGATGTA 57.211 33.333 0.00 0.00 0.00 2.29
3844 4084 8.569641 GTCTTAGATTTGTCTAGATACCGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3845 4085 8.568794 TGTCTTAGATTTGTCTAGATACCGATG 58.431 37.037 0.00 0.00 0.00 3.84
3846 4086 8.693120 TGTCTTAGATTTGTCTAGATACCGAT 57.307 34.615 0.00 0.00 0.00 4.18
3847 4087 8.515695 TTGTCTTAGATTTGTCTAGATACCGA 57.484 34.615 0.00 0.00 0.00 4.69
3848 4088 8.622157 TCTTGTCTTAGATTTGTCTAGATACCG 58.378 37.037 0.00 0.00 0.00 4.02
3855 4095 9.219603 CCACAATTCTTGTCTTAGATTTGTCTA 57.780 33.333 9.63 0.00 42.39 2.59
3856 4096 7.175641 CCCACAATTCTTGTCTTAGATTTGTCT 59.824 37.037 9.63 0.00 42.39 3.41
3857 4097 7.174946 TCCCACAATTCTTGTCTTAGATTTGTC 59.825 37.037 9.63 0.00 42.39 3.18
3858 4098 7.004086 TCCCACAATTCTTGTCTTAGATTTGT 58.996 34.615 0.00 0.00 43.82 2.83
3859 4099 7.308435 GTCCCACAATTCTTGTCTTAGATTTG 58.692 38.462 0.00 0.00 43.23 2.32
3860 4100 6.149474 CGTCCCACAATTCTTGTCTTAGATTT 59.851 38.462 0.00 0.00 43.23 2.17
3861 4101 5.643777 CGTCCCACAATTCTTGTCTTAGATT 59.356 40.000 0.00 0.00 43.23 2.40
3862 4102 5.178797 CGTCCCACAATTCTTGTCTTAGAT 58.821 41.667 0.00 0.00 43.23 1.98
3863 4103 4.562757 CCGTCCCACAATTCTTGTCTTAGA 60.563 45.833 0.00 0.00 43.23 2.10
3864 4104 3.684788 CCGTCCCACAATTCTTGTCTTAG 59.315 47.826 0.00 0.00 43.23 2.18
3865 4105 3.325425 TCCGTCCCACAATTCTTGTCTTA 59.675 43.478 0.00 0.00 43.23 2.10
3866 4106 2.105821 TCCGTCCCACAATTCTTGTCTT 59.894 45.455 0.00 0.00 43.23 3.01
3867 4107 1.697432 TCCGTCCCACAATTCTTGTCT 59.303 47.619 0.00 0.00 43.23 3.41
3868 4108 2.076863 CTCCGTCCCACAATTCTTGTC 58.923 52.381 0.00 0.00 43.23 3.18
3869 4109 1.271379 CCTCCGTCCCACAATTCTTGT 60.271 52.381 0.00 0.00 46.75 3.16
3870 4110 1.453155 CCTCCGTCCCACAATTCTTG 58.547 55.000 0.00 0.00 0.00 3.02
3871 4111 0.328258 CCCTCCGTCCCACAATTCTT 59.672 55.000 0.00 0.00 0.00 2.52
3872 4112 0.546747 TCCCTCCGTCCCACAATTCT 60.547 55.000 0.00 0.00 0.00 2.40
3873 4113 0.107654 CTCCCTCCGTCCCACAATTC 60.108 60.000 0.00 0.00 0.00 2.17
3874 4114 0.840722 ACTCCCTCCGTCCCACAATT 60.841 55.000 0.00 0.00 0.00 2.32
3875 4115 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
3876 4116 0.901580 GTACTCCCTCCGTCCCACAA 60.902 60.000 0.00 0.00 0.00 3.33
3877 4117 1.304713 GTACTCCCTCCGTCCCACA 60.305 63.158 0.00 0.00 0.00 4.17
3878 4118 1.000107 AGTACTCCCTCCGTCCCAC 60.000 63.158 0.00 0.00 0.00 4.61
3879 4119 1.305623 GAGTACTCCCTCCGTCCCA 59.694 63.158 12.13 0.00 0.00 4.37
3880 4120 0.324091 TTGAGTACTCCCTCCGTCCC 60.324 60.000 20.11 0.00 0.00 4.46
3881 4121 0.816373 GTTGAGTACTCCCTCCGTCC 59.184 60.000 20.11 0.00 0.00 4.79
3882 4122 1.473278 CTGTTGAGTACTCCCTCCGTC 59.527 57.143 20.11 3.81 0.00 4.79
3883 4123 1.203025 ACTGTTGAGTACTCCCTCCGT 60.203 52.381 20.11 9.65 0.00 4.69
3884 4124 1.546961 ACTGTTGAGTACTCCCTCCG 58.453 55.000 20.11 9.08 0.00 4.63
3893 4133 4.466015 TGGAGATGCATGTACTGTTGAGTA 59.534 41.667 2.46 0.00 33.21 2.59
3894 4134 3.261643 TGGAGATGCATGTACTGTTGAGT 59.738 43.478 2.46 0.00 36.07 3.41
3948 4216 9.463902 TGTAGTACTTTAGCTTAAGATCTCAGT 57.536 33.333 18.82 5.71 0.00 3.41
4437 4789 0.523072 CCCAGTTCCATGCTTGAACG 59.477 55.000 0.22 4.08 45.26 3.95
4453 4805 2.292918 ACATAGAGACTAACCTGGCCCA 60.293 50.000 0.00 0.00 0.00 5.36
4471 4830 4.281435 TGCAATGTCATTTGTCAGGAACAT 59.719 37.500 0.00 0.00 37.82 2.71
4472 4831 3.635836 TGCAATGTCATTTGTCAGGAACA 59.364 39.130 0.00 0.00 35.59 3.18
4531 4891 1.270412 ACATAACTTCCACGGTCGCAA 60.270 47.619 0.00 0.00 0.00 4.85
4535 4895 4.189231 AGCATAACATAACTTCCACGGTC 58.811 43.478 0.00 0.00 0.00 4.79
4825 5185 4.142816 CCTTGGAGTATTTGAAGTTGCTCG 60.143 45.833 0.00 0.00 0.00 5.03
4835 5195 4.332819 GGTGAATCGACCTTGGAGTATTTG 59.667 45.833 0.00 0.00 32.69 2.32
4850 5210 2.749076 TCAAAAGATGCAGGGTGAATCG 59.251 45.455 0.00 0.00 37.50 3.34
4859 5219 5.048921 ACATTCTGTCTGTCAAAAGATGCAG 60.049 40.000 0.00 0.00 35.68 4.41
4954 5315 5.722021 TCCCTAAAACCTGCAAAGATTTC 57.278 39.130 0.00 0.00 0.00 2.17
5120 5481 8.508875 CCGTTTTCTAATCTCTAGAGGATAGAC 58.491 40.741 23.72 16.55 31.00 2.59
5171 5548 7.340232 ACATATACTTTGCCAACTTGACATGAT 59.660 33.333 0.00 0.00 0.00 2.45
5254 5635 5.560722 TGAGTTCTCATTAAACCCAGACA 57.439 39.130 0.00 0.00 0.00 3.41
5427 5810 3.309961 TGCATGACTGAAGACTGAGAC 57.690 47.619 0.00 0.00 0.00 3.36
5552 8765 1.470890 CGTTGGGTTGCACGGATATTT 59.529 47.619 0.00 0.00 32.58 1.40
5665 8878 8.995906 GTATAATTTGCTACTTTTACAACTGCG 58.004 33.333 0.00 0.00 0.00 5.18
5984 13489 7.058023 TGCAGTTTTAAGGTGAGTACTAGAA 57.942 36.000 0.00 0.00 0.00 2.10
6013 13524 2.161609 CCACACGGGAGAAGCAATTTAC 59.838 50.000 0.00 0.00 40.01 2.01
6029 13540 1.001887 TAACGAATGGGGCCCACAC 60.002 57.895 31.54 23.07 35.80 3.82
6082 13615 2.124570 CCGCCACCCCTCAATGAG 60.125 66.667 2.68 2.68 0.00 2.90
6121 13654 2.554032 ACGGCAAAGAAACTGATTCCAG 59.446 45.455 0.00 0.00 45.76 3.86
6124 13657 2.412847 CGGACGGCAAAGAAACTGATTC 60.413 50.000 0.00 0.00 38.39 2.52
6125 13658 1.535462 CGGACGGCAAAGAAACTGATT 59.465 47.619 0.00 0.00 0.00 2.57
6126 13659 1.156736 CGGACGGCAAAGAAACTGAT 58.843 50.000 0.00 0.00 0.00 2.90
6127 13660 1.503818 GCGGACGGCAAAGAAACTGA 61.504 55.000 0.00 0.00 42.87 3.41
6128 13661 1.082104 GCGGACGGCAAAGAAACTG 60.082 57.895 0.00 0.00 42.87 3.16
6129 13662 2.258726 GGCGGACGGCAAAGAAACT 61.259 57.895 13.57 0.00 46.16 2.66
6130 13663 2.254350 GGCGGACGGCAAAGAAAC 59.746 61.111 13.57 0.00 46.16 2.78
6146 13679 1.586154 GACTTTGCCGTCCACCATGG 61.586 60.000 11.19 11.19 39.43 3.66
6147 13680 1.875963 GACTTTGCCGTCCACCATG 59.124 57.895 0.00 0.00 0.00 3.66
6148 13681 4.397348 GACTTTGCCGTCCACCAT 57.603 55.556 0.00 0.00 0.00 3.55
6162 13695 1.769665 TGGCTGATGGCAAAGGACT 59.230 52.632 0.00 0.00 46.03 3.85
6163 13696 4.421365 TGGCTGATGGCAAAGGAC 57.579 55.556 0.00 0.00 46.03 3.85
6171 13704 3.506096 CAGTGCGCTGGCTGATGG 61.506 66.667 19.78 0.00 40.82 3.51
6178 13711 4.363990 AGACGGACAGTGCGCTGG 62.364 66.667 29.60 15.37 46.62 4.85
6180 13713 2.856628 TTCAGACGGACAGTGCGCT 61.857 57.895 15.22 9.81 33.30 5.92
6181 13714 2.355837 TTCAGACGGACAGTGCGC 60.356 61.111 15.22 0.00 33.30 6.09
6182 13715 2.365068 CGTTCAGACGGACAGTGCG 61.365 63.158 13.61 13.61 45.32 5.34
6194 13727 2.175184 CTTTGCCGGCACTCGTTCAG 62.175 60.000 32.95 12.36 37.11 3.02
6196 13729 2.556287 CTTTGCCGGCACTCGTTC 59.444 61.111 32.95 0.00 37.11 3.95
6198 13731 2.748058 AATCCTTTGCCGGCACTCGT 62.748 55.000 32.95 11.93 37.11 4.18
6199 13732 2.040544 AATCCTTTGCCGGCACTCG 61.041 57.895 32.95 19.89 38.88 4.18
6200 13733 1.244019 ACAATCCTTTGCCGGCACTC 61.244 55.000 32.95 0.00 36.22 3.51
6201 13734 1.228552 ACAATCCTTTGCCGGCACT 60.229 52.632 32.95 8.85 36.22 4.40
6202 13735 1.080569 CACAATCCTTTGCCGGCAC 60.081 57.895 32.95 0.00 36.22 5.01
6210 14183 2.332654 GCGGACGGCACAATCCTTT 61.333 57.895 0.00 0.00 42.87 3.11
6212 14185 4.778143 GGCGGACGGCACAATCCT 62.778 66.667 13.57 0.00 46.16 3.24
6228 14201 2.829003 TCTGCTAGCCTCCGTCGG 60.829 66.667 13.29 4.39 0.00 4.79
6229 14202 2.409651 GTCTGCTAGCCTCCGTCG 59.590 66.667 13.29 0.00 0.00 5.12
6230 14203 2.409651 CGTCTGCTAGCCTCCGTC 59.590 66.667 13.29 0.00 0.00 4.79
6235 14208 1.078848 CTTTGCCGTCTGCTAGCCT 60.079 57.895 13.29 0.00 42.00 4.58
6236 14209 0.462759 ATCTTTGCCGTCTGCTAGCC 60.463 55.000 13.29 0.00 42.00 3.93
6245 14218 0.744414 CCGTCCATGATCTTTGCCGT 60.744 55.000 0.00 0.00 0.00 5.68
6247 14220 1.031571 TGCCGTCCATGATCTTTGCC 61.032 55.000 0.00 0.00 0.00 4.52
6248 14221 0.379669 CTGCCGTCCATGATCTTTGC 59.620 55.000 0.00 0.00 0.00 3.68
6249 14222 1.399440 CACTGCCGTCCATGATCTTTG 59.601 52.381 0.00 0.00 0.00 2.77
6250 14223 1.679944 CCACTGCCGTCCATGATCTTT 60.680 52.381 0.00 0.00 0.00 2.52
6251 14224 0.107508 CCACTGCCGTCCATGATCTT 60.108 55.000 0.00 0.00 0.00 2.40
6253 14226 1.524621 CCCACTGCCGTCCATGATC 60.525 63.158 0.00 0.00 0.00 2.92
6254 14227 2.591753 CCCACTGCCGTCCATGAT 59.408 61.111 0.00 0.00 0.00 2.45
6255 14228 3.716195 CCCCACTGCCGTCCATGA 61.716 66.667 0.00 0.00 0.00 3.07
6256 14229 4.033776 ACCCCACTGCCGTCCATG 62.034 66.667 0.00 0.00 0.00 3.66
6257 14230 4.033776 CACCCCACTGCCGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
6265 14238 2.529136 TCTCACCCCACCCCACTG 60.529 66.667 0.00 0.00 0.00 3.66
6266 14239 2.203998 CTCTCACCCCACCCCACT 60.204 66.667 0.00 0.00 0.00 4.00
6267 14240 4.035102 GCTCTCACCCCACCCCAC 62.035 72.222 0.00 0.00 0.00 4.61
6270 14243 1.198759 TAACAGCTCTCACCCCACCC 61.199 60.000 0.00 0.00 0.00 4.61
6271 14244 0.250513 CTAACAGCTCTCACCCCACC 59.749 60.000 0.00 0.00 0.00 4.61
6272 14245 0.250513 CCTAACAGCTCTCACCCCAC 59.749 60.000 0.00 0.00 0.00 4.61
6273 14246 0.909610 CCCTAACAGCTCTCACCCCA 60.910 60.000 0.00 0.00 0.00 4.96
6274 14247 1.627297 CCCCTAACAGCTCTCACCCC 61.627 65.000 0.00 0.00 0.00 4.95
6275 14248 0.910088 ACCCCTAACAGCTCTCACCC 60.910 60.000 0.00 0.00 0.00 4.61
6276 14249 0.984995 AACCCCTAACAGCTCTCACC 59.015 55.000 0.00 0.00 0.00 4.02
6278 14251 2.232941 CGTTAACCCCTAACAGCTCTCA 59.767 50.000 0.00 0.00 40.07 3.27
6279 14252 2.494870 TCGTTAACCCCTAACAGCTCTC 59.505 50.000 0.00 0.00 40.07 3.20
6280 14253 2.233186 GTCGTTAACCCCTAACAGCTCT 59.767 50.000 0.00 0.00 40.07 4.09
6281 14254 2.614779 GTCGTTAACCCCTAACAGCTC 58.385 52.381 0.00 0.00 40.07 4.09
6282 14255 1.067354 CGTCGTTAACCCCTAACAGCT 60.067 52.381 0.00 0.00 40.07 4.24
6284 14257 2.331194 CACGTCGTTAACCCCTAACAG 58.669 52.381 0.00 0.00 40.07 3.16
6285 14258 1.605202 GCACGTCGTTAACCCCTAACA 60.605 52.381 0.00 0.00 40.07 2.41
6287 14260 0.968405 AGCACGTCGTTAACCCCTAA 59.032 50.000 0.00 0.00 0.00 2.69
6288 14261 0.968405 AAGCACGTCGTTAACCCCTA 59.032 50.000 0.00 0.00 0.00 3.53
6289 14262 0.107268 AAAGCACGTCGTTAACCCCT 59.893 50.000 0.00 0.00 0.00 4.79
6290 14263 0.236449 CAAAGCACGTCGTTAACCCC 59.764 55.000 0.00 0.00 0.00 4.95
6292 14265 0.385098 GGCAAAGCACGTCGTTAACC 60.385 55.000 0.00 0.00 0.00 2.85
6293 14266 0.720173 CGGCAAAGCACGTCGTTAAC 60.720 55.000 0.00 0.00 0.00 2.01
6294 14267 1.152989 ACGGCAAAGCACGTCGTTAA 61.153 50.000 0.00 0.00 39.40 2.01
6295 14268 1.592131 ACGGCAAAGCACGTCGTTA 60.592 52.632 0.00 0.00 39.40 3.18
6296 14269 2.893404 ACGGCAAAGCACGTCGTT 60.893 55.556 0.00 0.00 39.40 3.85
6312 14285 0.596600 TTTGTCGTCCGTCAGCAGAC 60.597 55.000 0.00 0.00 41.46 3.51
6314 14287 0.318699 TCTTTGTCGTCCGTCAGCAG 60.319 55.000 0.00 0.00 0.00 4.24
6315 14288 0.318699 CTCTTTGTCGTCCGTCAGCA 60.319 55.000 0.00 0.00 0.00 4.41
6316 14289 1.618640 GCTCTTTGTCGTCCGTCAGC 61.619 60.000 0.00 0.00 0.00 4.26
6317 14290 0.039074 AGCTCTTTGTCGTCCGTCAG 60.039 55.000 0.00 0.00 0.00 3.51
6318 14291 0.039437 GAGCTCTTTGTCGTCCGTCA 60.039 55.000 6.43 0.00 0.00 4.35
6324 14297 1.506493 CAAGCTGAGCTCTTTGTCGT 58.494 50.000 16.19 0.00 38.25 4.34
6326 14299 0.520847 GCCAAGCTGAGCTCTTTGTC 59.479 55.000 16.19 3.59 38.25 3.18
6327 14300 0.892814 GGCCAAGCTGAGCTCTTTGT 60.893 55.000 16.19 0.00 38.25 2.83
6328 14301 0.892358 TGGCCAAGCTGAGCTCTTTG 60.892 55.000 16.19 15.47 38.25 2.77
6329 14302 0.608582 CTGGCCAAGCTGAGCTCTTT 60.609 55.000 16.19 4.12 38.25 2.52
6330 14303 1.002379 CTGGCCAAGCTGAGCTCTT 60.002 57.895 16.19 0.00 38.25 2.85
6331 14304 2.669849 CTGGCCAAGCTGAGCTCT 59.330 61.111 16.19 0.00 38.25 4.09
6362 14335 1.815421 GACATAGCTGGCCACGTGG 60.815 63.158 30.66 30.66 38.53 4.94
6364 14337 2.184322 CGACATAGCTGGCCACGT 59.816 61.111 0.00 0.00 0.00 4.49
6365 14338 1.878522 GACGACATAGCTGGCCACG 60.879 63.158 0.00 4.37 0.00 4.94
6366 14339 0.807667 CAGACGACATAGCTGGCCAC 60.808 60.000 0.00 0.00 0.00 5.01
6369 14342 1.884926 GGCAGACGACATAGCTGGC 60.885 63.158 0.00 0.00 45.73 4.85
6370 14343 0.529337 CTGGCAGACGACATAGCTGG 60.529 60.000 9.42 0.00 0.00 4.85
6371 14344 1.150567 GCTGGCAGACGACATAGCTG 61.151 60.000 20.86 0.00 0.00 4.24
6372 14345 1.142748 GCTGGCAGACGACATAGCT 59.857 57.895 20.86 0.00 0.00 3.32
6373 14346 2.233654 CGCTGGCAGACGACATAGC 61.234 63.158 20.86 0.00 0.00 2.97
6374 14347 1.589993 CCGCTGGCAGACGACATAG 60.590 63.158 25.48 10.19 0.00 2.23
6375 14348 2.049767 TCCGCTGGCAGACGACATA 61.050 57.895 25.48 10.48 0.00 2.29
6381 14354 3.858868 TTGTCGTCCGCTGGCAGAC 62.859 63.158 20.86 7.02 32.50 3.51
6382 14355 3.158537 TTTGTCGTCCGCTGGCAGA 62.159 57.895 20.86 0.00 0.00 4.26
6383 14356 2.664851 TTTGTCGTCCGCTGGCAG 60.665 61.111 10.94 10.94 0.00 4.85
6384 14357 2.664851 CTTTGTCGTCCGCTGGCA 60.665 61.111 0.00 0.00 0.00 4.92
6385 14358 2.357034 TCTTTGTCGTCCGCTGGC 60.357 61.111 0.00 0.00 0.00 4.85
6387 14360 0.946221 AAGCTCTTTGTCGTCCGCTG 60.946 55.000 0.00 0.00 0.00 5.18
6388 14361 0.249911 AAAGCTCTTTGTCGTCCGCT 60.250 50.000 0.00 0.00 0.00 5.52
6391 14364 7.269844 CAAAGATTCAAAGCTCTTTGTCGTCC 61.270 42.308 18.49 7.93 46.82 4.79
6392 14365 5.622856 CAAAGATTCAAAGCTCTTTGTCGTC 59.377 40.000 18.49 14.80 46.82 4.20
6399 14372 5.049818 CAGACGACAAAGATTCAAAGCTCTT 60.050 40.000 0.00 0.00 33.19 2.85
6400 14373 4.450419 CAGACGACAAAGATTCAAAGCTCT 59.550 41.667 0.00 0.00 0.00 4.09
6401 14374 4.706527 CAGACGACAAAGATTCAAAGCTC 58.293 43.478 0.00 0.00 0.00 4.09
6402 14375 3.058639 GCAGACGACAAAGATTCAAAGCT 60.059 43.478 0.00 0.00 0.00 3.74
6403 14376 3.058639 AGCAGACGACAAAGATTCAAAGC 60.059 43.478 0.00 0.00 0.00 3.51
6404 14377 4.461405 CAGCAGACGACAAAGATTCAAAG 58.539 43.478 0.00 0.00 0.00 2.77
6405 14378 3.250762 CCAGCAGACGACAAAGATTCAAA 59.749 43.478 0.00 0.00 0.00 2.69
6406 14379 2.807967 CCAGCAGACGACAAAGATTCAA 59.192 45.455 0.00 0.00 0.00 2.69
6407 14380 2.416747 CCAGCAGACGACAAAGATTCA 58.583 47.619 0.00 0.00 0.00 2.57
6408 14381 1.129437 GCCAGCAGACGACAAAGATTC 59.871 52.381 0.00 0.00 0.00 2.52
6409 14382 1.160137 GCCAGCAGACGACAAAGATT 58.840 50.000 0.00 0.00 0.00 2.40
6410 14383 0.035317 TGCCAGCAGACGACAAAGAT 59.965 50.000 0.00 0.00 0.00 2.40
6412 14385 0.601046 TCTGCCAGCAGACGACAAAG 60.601 55.000 18.14 0.00 46.80 2.77
6413 14386 1.445518 TCTGCCAGCAGACGACAAA 59.554 52.632 18.14 0.00 46.80 2.83
6422 14395 2.187685 CTATGCCGTCTGCCAGCA 59.812 61.111 0.00 0.00 41.50 4.41
6423 14396 3.275338 GCTATGCCGTCTGCCAGC 61.275 66.667 0.00 0.00 39.10 4.85
6424 14397 1.886313 CAGCTATGCCGTCTGCCAG 60.886 63.158 0.00 0.00 40.16 4.85
6425 14398 2.187685 CAGCTATGCCGTCTGCCA 59.812 61.111 0.00 0.00 40.16 4.92
6426 14399 2.590007 CCAGCTATGCCGTCTGCC 60.590 66.667 0.00 0.00 40.16 4.85
6427 14400 3.275338 GCCAGCTATGCCGTCTGC 61.275 66.667 0.00 0.00 41.77 4.26
6428 14401 2.590007 GGCCAGCTATGCCGTCTG 60.590 66.667 10.41 0.00 39.48 3.51
6434 14407 1.811860 CAAACAGGGCCAGCTATGC 59.188 57.895 6.18 0.00 0.00 3.14
6436 14409 4.344237 GCAAACAGGGCCAGCTAT 57.656 55.556 6.18 0.00 0.00 2.97
6444 14417 2.558359 CAAGTAAGAAGGGCAAACAGGG 59.442 50.000 0.00 0.00 0.00 4.45
6445 14418 3.222603 ACAAGTAAGAAGGGCAAACAGG 58.777 45.455 0.00 0.00 0.00 4.00
6446 14419 4.819630 TGTACAAGTAAGAAGGGCAAACAG 59.180 41.667 0.00 0.00 0.00 3.16
6447 14420 4.577283 GTGTACAAGTAAGAAGGGCAAACA 59.423 41.667 0.00 0.00 0.00 2.83
6448 14421 4.319261 CGTGTACAAGTAAGAAGGGCAAAC 60.319 45.833 0.00 0.00 0.00 2.93
6449 14422 3.810941 CGTGTACAAGTAAGAAGGGCAAA 59.189 43.478 0.00 0.00 0.00 3.68
6453 14426 3.185797 GCAACGTGTACAAGTAAGAAGGG 59.814 47.826 14.94 1.30 0.00 3.95
6454 14427 3.185797 GGCAACGTGTACAAGTAAGAAGG 59.814 47.826 14.94 2.85 0.00 3.46
6455 14428 4.385244 GGCAACGTGTACAAGTAAGAAG 57.615 45.455 14.94 4.76 0.00 2.85
6479 14452 1.802960 CACTTTGTAGTCTGCCAGCAG 59.197 52.381 13.54 13.54 44.86 4.24
6481 14454 2.169832 TCACTTTGTAGTCTGCCAGC 57.830 50.000 0.00 0.00 30.26 4.85
6482 14455 3.930336 TGATCACTTTGTAGTCTGCCAG 58.070 45.455 0.00 0.00 30.26 4.85
6483 14456 4.350368 TTGATCACTTTGTAGTCTGCCA 57.650 40.909 0.00 0.00 30.26 4.92
6486 14459 6.595326 TGCCTATTTGATCACTTTGTAGTCTG 59.405 38.462 0.00 0.00 30.26 3.51
6488 14461 6.457528 GCTGCCTATTTGATCACTTTGTAGTC 60.458 42.308 0.00 0.00 30.26 2.59
6489 14462 5.355350 GCTGCCTATTTGATCACTTTGTAGT 59.645 40.000 0.00 0.00 34.00 2.73
6490 14463 5.220931 GGCTGCCTATTTGATCACTTTGTAG 60.221 44.000 12.43 0.00 0.00 2.74
6491 14464 4.640201 GGCTGCCTATTTGATCACTTTGTA 59.360 41.667 12.43 0.00 0.00 2.41
6493 14466 3.181483 GGGCTGCCTATTTGATCACTTTG 60.181 47.826 19.68 0.00 0.00 2.77
6494 14467 3.026694 GGGCTGCCTATTTGATCACTTT 58.973 45.455 19.68 0.00 0.00 2.66
6495 14468 2.025037 TGGGCTGCCTATTTGATCACTT 60.025 45.455 19.68 0.00 0.00 3.16
6496 14469 1.565759 TGGGCTGCCTATTTGATCACT 59.434 47.619 19.68 0.00 0.00 3.41
6497 14470 1.952296 CTGGGCTGCCTATTTGATCAC 59.048 52.381 19.68 0.00 0.00 3.06
6498 14471 1.565759 ACTGGGCTGCCTATTTGATCA 59.434 47.619 19.68 4.21 0.00 2.92
6499 14472 1.952296 CACTGGGCTGCCTATTTGATC 59.048 52.381 19.68 0.00 0.00 2.92
6500 14473 1.285962 ACACTGGGCTGCCTATTTGAT 59.714 47.619 19.68 1.65 0.00 2.57
6501 14474 0.698238 ACACTGGGCTGCCTATTTGA 59.302 50.000 19.68 0.00 0.00 2.69
6502 14475 1.474077 GAACACTGGGCTGCCTATTTG 59.526 52.381 19.68 14.57 0.00 2.32
6503 14476 1.616994 GGAACACTGGGCTGCCTATTT 60.617 52.381 19.68 6.03 0.00 1.40
6504 14477 0.034089 GGAACACTGGGCTGCCTATT 60.034 55.000 19.68 3.38 0.00 1.73
6505 14478 1.609783 GGAACACTGGGCTGCCTAT 59.390 57.895 19.68 0.00 0.00 2.57
6507 14480 3.971702 GGGAACACTGGGCTGCCT 61.972 66.667 19.68 0.00 0.00 4.75
6509 14482 4.643387 ACGGGAACACTGGGCTGC 62.643 66.667 0.00 0.00 0.00 5.25
6510 14483 2.113139 AACGGGAACACTGGGCTG 59.887 61.111 0.00 0.00 0.00 4.85
6511 14484 2.113139 CAACGGGAACACTGGGCT 59.887 61.111 0.00 0.00 0.00 5.19
6512 14485 3.670377 GCAACGGGAACACTGGGC 61.670 66.667 0.00 0.00 0.00 5.36
6514 14487 1.785041 CTGTGCAACGGGAACACTGG 61.785 60.000 0.00 0.00 42.39 4.00
6515 14488 1.648720 CTGTGCAACGGGAACACTG 59.351 57.895 0.00 0.00 42.39 3.66
6516 14489 4.141144 CTGTGCAACGGGAACACT 57.859 55.556 0.00 0.00 42.39 3.55
6524 14497 0.037697 TGGTAGCTACCTGTGCAACG 60.038 55.000 36.49 0.00 46.58 4.10
6525 14498 1.439679 GTGGTAGCTACCTGTGCAAC 58.560 55.000 36.49 24.14 46.58 4.17
6526 14499 0.037697 CGTGGTAGCTACCTGTGCAA 60.038 55.000 36.49 17.83 46.58 4.08
6528 14501 0.736325 CACGTGGTAGCTACCTGTGC 60.736 60.000 34.99 24.90 46.58 4.57
6529 14502 0.108804 CCACGTGGTAGCTACCTGTG 60.109 60.000 36.59 36.59 46.58 3.66
6530 14503 1.885163 GCCACGTGGTAGCTACCTGT 61.885 60.000 36.49 30.93 46.58 4.00
6531 14504 1.153628 GCCACGTGGTAGCTACCTG 60.154 63.158 36.49 30.36 46.58 4.00
6532 14505 2.356780 GGCCACGTGGTAGCTACCT 61.357 63.158 36.49 19.24 46.58 3.08
6533 14506 2.186125 GGCCACGTGGTAGCTACC 59.814 66.667 33.92 32.37 46.62 3.18
6534 14507 1.141234 GAGGCCACGTGGTAGCTAC 59.859 63.158 33.92 15.88 37.57 3.58
6536 14509 1.481056 AAAGAGGCCACGTGGTAGCT 61.481 55.000 33.92 24.10 37.57 3.32
6537 14510 1.003718 AAAGAGGCCACGTGGTAGC 60.004 57.895 33.92 22.39 37.57 3.58
6539 14512 1.302192 GCAAAGAGGCCACGTGGTA 60.302 57.895 33.92 0.00 37.57 3.25
6556 14529 1.700600 GCAAAGCTCTAGCAGACGGC 61.701 60.000 4.54 0.00 45.16 5.68
6557 14530 1.086634 GGCAAAGCTCTAGCAGACGG 61.087 60.000 4.54 0.00 45.16 4.79
6558 14531 1.416813 CGGCAAAGCTCTAGCAGACG 61.417 60.000 4.54 3.98 45.16 4.18
6559 14532 0.390472 ACGGCAAAGCTCTAGCAGAC 60.390 55.000 4.54 0.00 45.16 3.51
6561 14534 1.086634 GGACGGCAAAGCTCTAGCAG 61.087 60.000 4.54 5.66 45.16 4.24
6562 14535 1.079127 GGACGGCAAAGCTCTAGCA 60.079 57.895 4.54 0.00 45.16 3.49
6564 14537 0.247736 AGTGGACGGCAAAGCTCTAG 59.752 55.000 0.00 0.00 0.00 2.43
6565 14538 0.037326 CAGTGGACGGCAAAGCTCTA 60.037 55.000 0.00 0.00 0.00 2.43
6566 14539 1.302033 CAGTGGACGGCAAAGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
6567 14540 2.328099 CCAGTGGACGGCAAAGCTC 61.328 63.158 1.68 0.00 0.00 4.09
6568 14541 2.281761 CCAGTGGACGGCAAAGCT 60.282 61.111 1.68 0.00 0.00 3.74
6577 14550 3.825160 TTGCCGTCTGCCAGTGGAC 62.825 63.158 15.20 4.87 40.16 4.02
6580 14553 1.572085 CTCTTTGCCGTCTGCCAGTG 61.572 60.000 0.00 0.00 40.16 3.66
6581 14554 1.302033 CTCTTTGCCGTCTGCCAGT 60.302 57.895 0.00 0.00 40.16 4.00
6582 14555 2.037136 CCTCTTTGCCGTCTGCCAG 61.037 63.158 0.00 0.00 40.16 4.85
6584 14557 2.521958 TAGCCTCTTTGCCGTCTGCC 62.522 60.000 0.00 0.00 40.16 4.85
6585 14558 0.462759 ATAGCCTCTTTGCCGTCTGC 60.463 55.000 0.00 0.00 41.77 4.26
6587 14560 4.160626 GGATATATAGCCTCTTTGCCGTCT 59.839 45.833 9.88 0.00 0.00 4.18
6588 14561 4.081642 TGGATATATAGCCTCTTTGCCGTC 60.082 45.833 17.63 0.00 31.73 4.79
6589 14562 3.838317 TGGATATATAGCCTCTTTGCCGT 59.162 43.478 17.63 0.00 31.73 5.68
6590 14563 4.471904 TGGATATATAGCCTCTTTGCCG 57.528 45.455 17.63 0.00 31.73 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.