Multiple sequence alignment - TraesCS1D01G034600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G034600 chr1D 100.000 3545 0 0 1 3545 15051202 15047658 0.000000e+00 6547.0
1 TraesCS1D01G034600 chr1D 92.982 57 4 0 1225 1281 375970379 375970323 2.270000e-12 84.2
2 TraesCS1D01G034600 chr1A 90.286 2409 116 49 419 2770 15516098 15518445 0.000000e+00 3044.0
3 TraesCS1D01G034600 chr1A 81.790 324 37 11 2411 2727 15539683 15539991 5.870000e-63 252.0
4 TraesCS1D01G034600 chr1A 78.195 133 12 12 632 761 15546328 15546210 6.350000e-08 69.4
5 TraesCS1D01G034600 chr1B 90.074 2428 115 57 391 2770 20837156 20834807 0.000000e+00 3033.0
6 TraesCS1D01G034600 chr1B 91.765 85 7 0 1424 1508 21298804 21298720 6.220000e-23 119.0
7 TraesCS1D01G034600 chr4D 97.818 779 16 1 2768 3545 300491394 300492172 0.000000e+00 1343.0
8 TraesCS1D01G034600 chr4D 97.176 779 21 1 2768 3545 59033528 59034306 0.000000e+00 1315.0
9 TraesCS1D01G034600 chr6D 97.925 771 15 1 2776 3545 56999809 56999039 0.000000e+00 1334.0
10 TraesCS1D01G034600 chr6D 97.304 779 20 1 2768 3545 36098765 36099543 0.000000e+00 1321.0
11 TraesCS1D01G034600 chr6D 72.100 319 66 23 2160 2465 399219198 399218890 1.360000e-09 75.0
12 TraesCS1D01G034600 chr5D 97.433 779 19 1 2768 3545 58158783 58158005 0.000000e+00 1327.0
13 TraesCS1D01G034600 chr5D 89.247 93 7 2 1057 1146 564234890 564234982 2.890000e-21 113.0
14 TraesCS1D01G034600 chr5D 91.045 67 6 0 1225 1291 564234977 564235043 1.360000e-14 91.6
15 TraesCS1D01G034600 chr3D 97.433 779 19 1 2768 3545 386701041 386700263 0.000000e+00 1327.0
16 TraesCS1D01G034600 chr3D 97.433 779 19 1 2768 3545 577272117 577271339 0.000000e+00 1327.0
17 TraesCS1D01G034600 chr3D 97.304 779 20 1 2768 3545 580656002 580655224 0.000000e+00 1321.0
18 TraesCS1D01G034600 chr3D 88.889 234 23 1 1057 1287 329685938 329686171 5.790000e-73 285.0
19 TraesCS1D01G034600 chr3D 86.508 126 9 2 1324 1449 329686165 329686282 7.990000e-27 132.0
20 TraesCS1D01G034600 chr2D 96.919 779 23 1 2768 3545 88116379 88117157 0.000000e+00 1304.0
21 TraesCS1D01G034600 chr2D 76.301 1076 194 52 1442 2485 79233584 79232538 5.250000e-143 518.0
22 TraesCS1D01G034600 chr2D 84.058 69 11 0 1799 1867 381339109 381339041 2.280000e-07 67.6
23 TraesCS1D01G034600 chr2A 76.222 1064 183 55 1442 2485 79442518 79441505 1.900000e-137 499.0
24 TraesCS1D01G034600 chr2B 75.614 1099 215 43 1427 2497 123101517 123100444 2.460000e-136 496.0
25 TraesCS1D01G034600 chr7A 89.706 68 7 0 1224 1291 669064921 669064854 1.750000e-13 87.9
26 TraesCS1D01G034600 chr6A 71.698 318 69 21 2160 2465 545319210 545318902 6.350000e-08 69.4
27 TraesCS1D01G034600 chr6A 79.570 93 17 2 2160 2251 71067516 71067607 8.210000e-07 65.8
28 TraesCS1D01G034600 chr6B 71.384 318 70 21 2160 2465 597557087 597556779 2.950000e-06 63.9
29 TraesCS1D01G034600 chr6B 100.000 28 0 0 2160 2187 127040565 127040592 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G034600 chr1D 15047658 15051202 3544 True 6547 6547 100.000 1 3545 1 chr1D.!!$R1 3544
1 TraesCS1D01G034600 chr1A 15516098 15518445 2347 False 3044 3044 90.286 419 2770 1 chr1A.!!$F1 2351
2 TraesCS1D01G034600 chr1B 20834807 20837156 2349 True 3033 3033 90.074 391 2770 1 chr1B.!!$R1 2379
3 TraesCS1D01G034600 chr4D 300491394 300492172 778 False 1343 1343 97.818 2768 3545 1 chr4D.!!$F2 777
4 TraesCS1D01G034600 chr4D 59033528 59034306 778 False 1315 1315 97.176 2768 3545 1 chr4D.!!$F1 777
5 TraesCS1D01G034600 chr6D 56999039 56999809 770 True 1334 1334 97.925 2776 3545 1 chr6D.!!$R1 769
6 TraesCS1D01G034600 chr6D 36098765 36099543 778 False 1321 1321 97.304 2768 3545 1 chr6D.!!$F1 777
7 TraesCS1D01G034600 chr5D 58158005 58158783 778 True 1327 1327 97.433 2768 3545 1 chr5D.!!$R1 777
8 TraesCS1D01G034600 chr3D 386700263 386701041 778 True 1327 1327 97.433 2768 3545 1 chr3D.!!$R1 777
9 TraesCS1D01G034600 chr3D 577271339 577272117 778 True 1327 1327 97.433 2768 3545 1 chr3D.!!$R2 777
10 TraesCS1D01G034600 chr3D 580655224 580656002 778 True 1321 1321 97.304 2768 3545 1 chr3D.!!$R3 777
11 TraesCS1D01G034600 chr2D 88116379 88117157 778 False 1304 1304 96.919 2768 3545 1 chr2D.!!$F1 777
12 TraesCS1D01G034600 chr2D 79232538 79233584 1046 True 518 518 76.301 1442 2485 1 chr2D.!!$R1 1043
13 TraesCS1D01G034600 chr2A 79441505 79442518 1013 True 499 499 76.222 1442 2485 1 chr2A.!!$R1 1043
14 TraesCS1D01G034600 chr2B 123100444 123101517 1073 True 496 496 75.614 1427 2497 1 chr2B.!!$R1 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.038166 GATGGAGGTGCCTTGGTTGA 59.962 55.0 0.00 0.0 37.63 3.18 F
34 35 0.038166 GGAGGTGCCTTGGTTGATCA 59.962 55.0 0.00 0.0 0.00 2.92 F
101 102 0.038618 GGGCGACGGCAAAATTTCTT 60.039 50.0 23.66 0.0 42.47 2.52 F
1764 1855 0.040692 TCGACTTCTCCAACGACACG 60.041 55.0 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1040 1086 1.257743 CTCCTTCTCCTCGTTGTGGA 58.742 55.000 0.00 0.0 0.0 4.02 R
1908 2002 1.335506 GCGTTCTCCTCCTCGATGATC 60.336 57.143 0.00 0.0 0.0 2.92 R
1973 2088 3.260483 CGAGCTGCTCCGTGATGC 61.260 66.667 22.97 0.0 0.0 3.91 R
3035 3160 0.187606 GACCCCTCACCCCAAAAGTT 59.812 55.000 0.00 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.386661 AGTAGTTGTTGCGATGGAGG 57.613 50.000 0.00 0.00 0.00 4.30
20 21 1.623811 AGTAGTTGTTGCGATGGAGGT 59.376 47.619 0.00 0.00 0.00 3.85
21 22 1.732259 GTAGTTGTTGCGATGGAGGTG 59.268 52.381 0.00 0.00 0.00 4.00
22 23 1.210155 GTTGTTGCGATGGAGGTGC 59.790 57.895 0.00 0.00 0.00 5.01
23 24 1.971167 TTGTTGCGATGGAGGTGCC 60.971 57.895 0.00 0.00 37.10 5.01
24 25 2.045926 GTTGCGATGGAGGTGCCT 60.046 61.111 0.00 0.00 37.63 4.75
25 26 1.675641 GTTGCGATGGAGGTGCCTT 60.676 57.895 0.00 0.00 37.63 4.35
26 27 1.675310 TTGCGATGGAGGTGCCTTG 60.675 57.895 0.00 0.00 37.63 3.61
27 28 2.825836 GCGATGGAGGTGCCTTGG 60.826 66.667 0.00 0.00 37.63 3.61
28 29 2.671070 CGATGGAGGTGCCTTGGT 59.329 61.111 0.00 0.00 37.63 3.67
29 30 1.002134 CGATGGAGGTGCCTTGGTT 60.002 57.895 0.00 0.00 37.63 3.67
30 31 1.308069 CGATGGAGGTGCCTTGGTTG 61.308 60.000 0.00 0.00 37.63 3.77
31 32 0.038166 GATGGAGGTGCCTTGGTTGA 59.962 55.000 0.00 0.00 37.63 3.18
32 33 0.706433 ATGGAGGTGCCTTGGTTGAT 59.294 50.000 0.00 0.00 37.63 2.57
33 34 0.038166 TGGAGGTGCCTTGGTTGATC 59.962 55.000 0.00 0.00 37.63 2.92
34 35 0.038166 GGAGGTGCCTTGGTTGATCA 59.962 55.000 0.00 0.00 0.00 2.92
35 36 1.341383 GGAGGTGCCTTGGTTGATCAT 60.341 52.381 0.00 0.00 0.00 2.45
36 37 1.747355 GAGGTGCCTTGGTTGATCATG 59.253 52.381 0.00 0.00 0.00 3.07
37 38 1.355381 AGGTGCCTTGGTTGATCATGA 59.645 47.619 0.00 0.00 0.00 3.07
38 39 1.474077 GGTGCCTTGGTTGATCATGAC 59.526 52.381 0.00 0.00 0.00 3.06
39 40 1.131126 GTGCCTTGGTTGATCATGACG 59.869 52.381 0.00 0.00 0.00 4.35
40 41 0.099436 GCCTTGGTTGATCATGACGC 59.901 55.000 0.00 0.00 0.00 5.19
41 42 1.452110 CCTTGGTTGATCATGACGCA 58.548 50.000 0.00 0.00 0.00 5.24
42 43 1.811965 CCTTGGTTGATCATGACGCAA 59.188 47.619 0.00 2.87 0.00 4.85
43 44 2.424601 CCTTGGTTGATCATGACGCAAT 59.575 45.455 13.93 0.00 0.00 3.56
44 45 3.119388 CCTTGGTTGATCATGACGCAATT 60.119 43.478 13.93 0.00 0.00 2.32
45 46 3.490800 TGGTTGATCATGACGCAATTG 57.509 42.857 13.93 0.00 0.00 2.32
46 47 2.819019 TGGTTGATCATGACGCAATTGT 59.181 40.909 13.93 0.00 0.00 2.71
47 48 3.173599 GGTTGATCATGACGCAATTGTG 58.826 45.455 17.32 17.32 0.00 3.33
48 49 3.366273 GGTTGATCATGACGCAATTGTGT 60.366 43.478 24.04 24.04 42.13 3.72
49 50 3.474693 TGATCATGACGCAATTGTGTG 57.525 42.857 28.32 14.61 39.12 3.82
54 55 3.339731 ACGCAATTGTGTGTCCCG 58.660 55.556 23.26 10.48 45.42 5.14
55 56 1.525077 ACGCAATTGTGTGTCCCGT 60.525 52.632 23.26 11.13 45.42 5.28
56 57 1.206578 CGCAATTGTGTGTCCCGTC 59.793 57.895 10.93 0.00 0.00 4.79
57 58 1.227999 CGCAATTGTGTGTCCCGTCT 61.228 55.000 10.93 0.00 0.00 4.18
58 59 0.951558 GCAATTGTGTGTCCCGTCTT 59.048 50.000 7.40 0.00 0.00 3.01
59 60 1.334960 GCAATTGTGTGTCCCGTCTTG 60.335 52.381 7.40 0.00 0.00 3.02
60 61 1.946768 CAATTGTGTGTCCCGTCTTGT 59.053 47.619 0.00 0.00 0.00 3.16
61 62 2.341846 ATTGTGTGTCCCGTCTTGTT 57.658 45.000 0.00 0.00 0.00 2.83
62 63 1.374560 TTGTGTGTCCCGTCTTGTTG 58.625 50.000 0.00 0.00 0.00 3.33
63 64 1.092921 TGTGTGTCCCGTCTTGTTGC 61.093 55.000 0.00 0.00 0.00 4.17
64 65 1.525077 TGTGTCCCGTCTTGTTGCC 60.525 57.895 0.00 0.00 0.00 4.52
65 66 1.227853 GTGTCCCGTCTTGTTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
66 67 0.818040 GTGTCCCGTCTTGTTGCCTT 60.818 55.000 0.00 0.00 0.00 4.35
67 68 0.106918 TGTCCCGTCTTGTTGCCTTT 60.107 50.000 0.00 0.00 0.00 3.11
68 69 1.029681 GTCCCGTCTTGTTGCCTTTT 58.970 50.000 0.00 0.00 0.00 2.27
69 70 1.028905 TCCCGTCTTGTTGCCTTTTG 58.971 50.000 0.00 0.00 0.00 2.44
70 71 0.744281 CCCGTCTTGTTGCCTTTTGT 59.256 50.000 0.00 0.00 0.00 2.83
71 72 1.535860 CCCGTCTTGTTGCCTTTTGTG 60.536 52.381 0.00 0.00 0.00 3.33
72 73 1.535860 CCGTCTTGTTGCCTTTTGTGG 60.536 52.381 0.00 0.00 0.00 4.17
83 84 1.547372 CCTTTTGTGGCTGGAGATTGG 59.453 52.381 0.00 0.00 0.00 3.16
84 85 1.547372 CTTTTGTGGCTGGAGATTGGG 59.453 52.381 0.00 0.00 0.00 4.12
85 86 0.899717 TTTGTGGCTGGAGATTGGGC 60.900 55.000 0.00 0.00 0.00 5.36
86 87 2.825836 GTGGCTGGAGATTGGGCG 60.826 66.667 0.00 0.00 0.00 6.13
87 88 3.008517 TGGCTGGAGATTGGGCGA 61.009 61.111 0.00 0.00 0.00 5.54
88 89 2.514824 GGCTGGAGATTGGGCGAC 60.515 66.667 0.00 0.00 0.00 5.19
89 90 2.892425 GCTGGAGATTGGGCGACG 60.892 66.667 0.00 0.00 0.00 5.12
90 91 2.202932 CTGGAGATTGGGCGACGG 60.203 66.667 0.00 0.00 0.00 4.79
91 92 4.467084 TGGAGATTGGGCGACGGC 62.467 66.667 13.84 13.84 38.90 5.68
92 93 4.467084 GGAGATTGGGCGACGGCA 62.467 66.667 23.66 3.53 42.47 5.69
93 94 2.435938 GAGATTGGGCGACGGCAA 60.436 61.111 23.66 9.53 42.47 4.52
94 95 2.033448 AGATTGGGCGACGGCAAA 59.967 55.556 23.66 19.09 42.47 3.68
95 96 1.582610 GAGATTGGGCGACGGCAAAA 61.583 55.000 23.66 16.46 42.47 2.44
96 97 0.965363 AGATTGGGCGACGGCAAAAT 60.965 50.000 23.66 20.22 42.47 1.82
97 98 0.108851 GATTGGGCGACGGCAAAATT 60.109 50.000 23.66 3.85 42.47 1.82
98 99 0.320050 ATTGGGCGACGGCAAAATTT 59.680 45.000 23.66 0.02 42.47 1.82
99 100 0.319125 TTGGGCGACGGCAAAATTTC 60.319 50.000 23.66 4.19 42.47 2.17
100 101 1.175983 TGGGCGACGGCAAAATTTCT 61.176 50.000 23.66 0.00 42.47 2.52
101 102 0.038618 GGGCGACGGCAAAATTTCTT 60.039 50.000 23.66 0.00 42.47 2.52
102 103 1.059942 GGCGACGGCAAAATTTCTTG 58.940 50.000 17.49 0.00 42.47 3.02
103 104 1.601914 GGCGACGGCAAAATTTCTTGT 60.602 47.619 17.49 0.00 42.47 3.16
104 105 1.451651 GCGACGGCAAAATTTCTTGTG 59.548 47.619 0.00 0.00 39.62 3.33
105 106 2.726633 CGACGGCAAAATTTCTTGTGT 58.273 42.857 0.00 0.00 0.00 3.72
106 107 2.467305 CGACGGCAAAATTTCTTGTGTG 59.533 45.455 0.00 0.00 0.00 3.82
107 108 3.443976 GACGGCAAAATTTCTTGTGTGT 58.556 40.909 0.00 0.00 0.00 3.72
108 109 3.443976 ACGGCAAAATTTCTTGTGTGTC 58.556 40.909 0.00 0.00 0.00 3.67
109 110 2.467305 CGGCAAAATTTCTTGTGTGTCG 59.533 45.455 0.00 0.00 0.00 4.35
110 111 2.218530 GGCAAAATTTCTTGTGTGTCGC 59.781 45.455 0.00 0.00 0.00 5.19
111 112 2.857152 GCAAAATTTCTTGTGTGTCGCA 59.143 40.909 0.00 0.00 0.00 5.10
112 113 3.305629 GCAAAATTTCTTGTGTGTCGCAA 59.694 39.130 0.00 0.00 32.75 4.85
113 114 4.025813 GCAAAATTTCTTGTGTGTCGCAAT 60.026 37.500 0.00 0.00 33.31 3.56
114 115 5.425398 CAAAATTTCTTGTGTGTCGCAATG 58.575 37.500 0.00 0.00 33.31 2.82
115 116 2.772568 TTTCTTGTGTGTCGCAATGG 57.227 45.000 0.00 0.00 33.31 3.16
116 117 1.960417 TTCTTGTGTGTCGCAATGGA 58.040 45.000 0.00 0.00 33.31 3.41
117 118 2.183478 TCTTGTGTGTCGCAATGGAT 57.817 45.000 0.00 0.00 33.31 3.41
118 119 2.503331 TCTTGTGTGTCGCAATGGATT 58.497 42.857 0.00 0.00 33.31 3.01
119 120 2.884012 TCTTGTGTGTCGCAATGGATTT 59.116 40.909 0.00 0.00 33.31 2.17
120 121 2.702898 TGTGTGTCGCAATGGATTTG 57.297 45.000 0.00 0.00 38.43 2.32
121 122 1.269174 TGTGTGTCGCAATGGATTTGG 59.731 47.619 0.00 0.00 35.75 3.28
122 123 1.269448 GTGTGTCGCAATGGATTTGGT 59.731 47.619 0.00 0.00 35.75 3.67
123 124 1.959985 TGTGTCGCAATGGATTTGGTT 59.040 42.857 0.00 0.00 35.75 3.67
124 125 2.288091 TGTGTCGCAATGGATTTGGTTG 60.288 45.455 0.00 0.00 35.75 3.77
125 126 1.959985 TGTCGCAATGGATTTGGTTGT 59.040 42.857 0.00 0.00 35.75 3.32
126 127 3.057876 GTGTCGCAATGGATTTGGTTGTA 60.058 43.478 0.00 0.00 35.75 2.41
127 128 3.190327 TGTCGCAATGGATTTGGTTGTAG 59.810 43.478 0.00 0.00 35.75 2.74
128 129 3.190535 GTCGCAATGGATTTGGTTGTAGT 59.809 43.478 0.00 0.00 35.75 2.73
129 130 3.190327 TCGCAATGGATTTGGTTGTAGTG 59.810 43.478 0.00 0.00 35.75 2.74
130 131 3.190327 CGCAATGGATTTGGTTGTAGTGA 59.810 43.478 0.00 0.00 35.75 3.41
131 132 4.485163 GCAATGGATTTGGTTGTAGTGAC 58.515 43.478 0.00 0.00 35.75 3.67
132 133 4.722194 CAATGGATTTGGTTGTAGTGACG 58.278 43.478 0.00 0.00 0.00 4.35
133 134 2.773487 TGGATTTGGTTGTAGTGACGG 58.227 47.619 0.00 0.00 0.00 4.79
134 135 2.105134 TGGATTTGGTTGTAGTGACGGT 59.895 45.455 0.00 0.00 0.00 4.83
135 136 3.324268 TGGATTTGGTTGTAGTGACGGTA 59.676 43.478 0.00 0.00 0.00 4.02
136 137 3.681417 GGATTTGGTTGTAGTGACGGTAC 59.319 47.826 0.00 0.00 0.00 3.34
137 138 4.562143 GGATTTGGTTGTAGTGACGGTACT 60.562 45.833 0.00 0.00 34.71 2.73
138 139 5.336690 GGATTTGGTTGTAGTGACGGTACTA 60.337 44.000 0.00 0.00 32.19 1.82
139 140 4.771590 TTGGTTGTAGTGACGGTACTAG 57.228 45.455 1.81 0.00 34.05 2.57
140 141 3.084039 TGGTTGTAGTGACGGTACTAGG 58.916 50.000 0.00 0.00 34.05 3.02
141 142 3.244875 TGGTTGTAGTGACGGTACTAGGA 60.245 47.826 0.00 0.00 34.05 2.94
142 143 3.758554 GGTTGTAGTGACGGTACTAGGAA 59.241 47.826 0.00 0.00 34.05 3.36
143 144 4.400567 GGTTGTAGTGACGGTACTAGGAAT 59.599 45.833 0.00 0.00 34.05 3.01
144 145 5.105595 GGTTGTAGTGACGGTACTAGGAATT 60.106 44.000 0.00 0.00 34.05 2.17
145 146 5.824904 TGTAGTGACGGTACTAGGAATTC 57.175 43.478 0.00 0.00 34.05 2.17
146 147 5.255687 TGTAGTGACGGTACTAGGAATTCA 58.744 41.667 7.93 0.00 34.05 2.57
147 148 5.711506 TGTAGTGACGGTACTAGGAATTCAA 59.288 40.000 7.93 0.00 34.05 2.69
148 149 5.934402 AGTGACGGTACTAGGAATTCAAT 57.066 39.130 7.93 0.00 0.00 2.57
149 150 5.903810 AGTGACGGTACTAGGAATTCAATC 58.096 41.667 7.93 0.00 0.00 2.67
150 151 5.421056 AGTGACGGTACTAGGAATTCAATCA 59.579 40.000 7.93 0.00 0.00 2.57
151 152 5.519206 GTGACGGTACTAGGAATTCAATCAC 59.481 44.000 7.93 3.76 0.00 3.06
152 153 4.679662 ACGGTACTAGGAATTCAATCACG 58.320 43.478 7.93 5.38 0.00 4.35
153 154 3.489785 CGGTACTAGGAATTCAATCACGC 59.510 47.826 7.93 0.00 0.00 5.34
154 155 3.489785 GGTACTAGGAATTCAATCACGCG 59.510 47.826 3.53 3.53 0.00 6.01
155 156 3.247006 ACTAGGAATTCAATCACGCGT 57.753 42.857 5.58 5.58 0.00 6.01
156 157 4.380841 ACTAGGAATTCAATCACGCGTA 57.619 40.909 13.44 0.28 0.00 4.42
157 158 4.360563 ACTAGGAATTCAATCACGCGTAG 58.639 43.478 13.44 6.92 0.00 3.51
158 159 3.247006 AGGAATTCAATCACGCGTAGT 57.753 42.857 13.44 0.00 0.00 2.73
159 160 3.187700 AGGAATTCAATCACGCGTAGTC 58.812 45.455 13.44 3.48 0.00 2.59
160 161 2.927477 GGAATTCAATCACGCGTAGTCA 59.073 45.455 13.44 0.00 0.00 3.41
161 162 3.241995 GGAATTCAATCACGCGTAGTCAC 60.242 47.826 13.44 0.00 0.00 3.67
162 163 2.717580 TTCAATCACGCGTAGTCACT 57.282 45.000 13.44 0.00 0.00 3.41
163 164 2.717580 TCAATCACGCGTAGTCACTT 57.282 45.000 13.44 0.00 0.00 3.16
164 165 2.592194 TCAATCACGCGTAGTCACTTC 58.408 47.619 13.44 0.00 0.00 3.01
165 166 2.030628 TCAATCACGCGTAGTCACTTCA 60.031 45.455 13.44 0.00 0.00 3.02
166 167 2.717580 ATCACGCGTAGTCACTTCAA 57.282 45.000 13.44 0.00 0.00 2.69
167 168 2.495409 TCACGCGTAGTCACTTCAAA 57.505 45.000 13.44 0.00 0.00 2.69
168 169 2.811855 TCACGCGTAGTCACTTCAAAA 58.188 42.857 13.44 0.00 0.00 2.44
169 170 3.386486 TCACGCGTAGTCACTTCAAAAT 58.614 40.909 13.44 0.00 0.00 1.82
170 171 3.805422 TCACGCGTAGTCACTTCAAAATT 59.195 39.130 13.44 0.00 0.00 1.82
171 172 3.900116 CACGCGTAGTCACTTCAAAATTG 59.100 43.478 13.44 0.00 0.00 2.32
172 173 3.558418 ACGCGTAGTCACTTCAAAATTGT 59.442 39.130 11.67 0.00 0.00 2.71
173 174 3.900116 CGCGTAGTCACTTCAAAATTGTG 59.100 43.478 0.00 0.00 0.00 3.33
174 175 4.551990 CGCGTAGTCACTTCAAAATTGTGT 60.552 41.667 0.00 0.00 33.82 3.72
175 176 5.332732 CGCGTAGTCACTTCAAAATTGTGTA 60.333 40.000 0.00 0.00 33.82 2.90
176 177 6.071463 GCGTAGTCACTTCAAAATTGTGTAG 58.929 40.000 0.93 0.93 33.82 2.74
177 178 6.292703 GCGTAGTCACTTCAAAATTGTGTAGT 60.293 38.462 2.21 2.21 33.82 2.73
178 179 7.281484 CGTAGTCACTTCAAAATTGTGTAGTC 58.719 38.462 4.99 0.00 33.82 2.59
179 180 7.042992 CGTAGTCACTTCAAAATTGTGTAGTCA 60.043 37.037 4.99 0.00 33.82 3.41
180 181 7.807977 AGTCACTTCAAAATTGTGTAGTCAT 57.192 32.000 4.99 0.00 33.82 3.06
181 182 8.902540 AGTCACTTCAAAATTGTGTAGTCATA 57.097 30.769 4.99 0.00 33.82 2.15
182 183 9.507329 AGTCACTTCAAAATTGTGTAGTCATAT 57.493 29.630 4.99 0.00 33.82 1.78
183 184 9.546909 GTCACTTCAAAATTGTGTAGTCATATG 57.453 33.333 4.99 0.00 33.82 1.78
184 185 9.283768 TCACTTCAAAATTGTGTAGTCATATGT 57.716 29.630 4.99 0.00 33.82 2.29
227 228 6.927933 AAAATACAACAGCGCTAAACATTC 57.072 33.333 10.99 0.00 0.00 2.67
228 229 5.621197 AATACAACAGCGCTAAACATTCA 57.379 34.783 10.99 0.00 0.00 2.57
229 230 3.268013 ACAACAGCGCTAAACATTCAC 57.732 42.857 10.99 0.00 0.00 3.18
230 231 2.616376 ACAACAGCGCTAAACATTCACA 59.384 40.909 10.99 0.00 0.00 3.58
231 232 3.253188 ACAACAGCGCTAAACATTCACAT 59.747 39.130 10.99 0.00 0.00 3.21
232 233 4.229096 CAACAGCGCTAAACATTCACATT 58.771 39.130 10.99 0.00 0.00 2.71
233 234 4.503741 ACAGCGCTAAACATTCACATTT 57.496 36.364 10.99 0.00 0.00 2.32
234 235 5.621197 ACAGCGCTAAACATTCACATTTA 57.379 34.783 10.99 0.00 0.00 1.40
235 236 6.194796 ACAGCGCTAAACATTCACATTTAT 57.805 33.333 10.99 0.00 0.00 1.40
236 237 6.620678 ACAGCGCTAAACATTCACATTTATT 58.379 32.000 10.99 0.00 0.00 1.40
237 238 7.090173 ACAGCGCTAAACATTCACATTTATTT 58.910 30.769 10.99 0.00 0.00 1.40
238 239 8.240682 ACAGCGCTAAACATTCACATTTATTTA 58.759 29.630 10.99 0.00 0.00 1.40
239 240 8.523464 CAGCGCTAAACATTCACATTTATTTAC 58.477 33.333 10.99 0.00 0.00 2.01
240 241 7.428183 AGCGCTAAACATTCACATTTATTTACG 59.572 33.333 8.99 0.00 0.00 3.18
241 242 7.305190 GCGCTAAACATTCACATTTATTTACGG 60.305 37.037 0.00 0.00 0.00 4.02
242 243 7.906010 CGCTAAACATTCACATTTATTTACGGA 59.094 33.333 0.00 0.00 0.00 4.69
243 244 9.221775 GCTAAACATTCACATTTATTTACGGAG 57.778 33.333 0.00 0.00 0.00 4.63
244 245 9.716507 CTAAACATTCACATTTATTTACGGAGG 57.283 33.333 0.00 0.00 0.00 4.30
245 246 6.693315 ACATTCACATTTATTTACGGAGGG 57.307 37.500 0.00 0.00 0.00 4.30
246 247 6.419791 ACATTCACATTTATTTACGGAGGGA 58.580 36.000 0.00 0.00 0.00 4.20
247 248 6.542370 ACATTCACATTTATTTACGGAGGGAG 59.458 38.462 0.00 0.00 0.00 4.30
248 249 5.687166 TCACATTTATTTACGGAGGGAGT 57.313 39.130 0.00 0.00 0.00 3.85
249 250 6.795144 TCACATTTATTTACGGAGGGAGTA 57.205 37.500 0.00 0.00 0.00 2.59
250 251 7.369551 TCACATTTATTTACGGAGGGAGTAT 57.630 36.000 0.00 0.00 0.00 2.12
251 252 7.798071 TCACATTTATTTACGGAGGGAGTATT 58.202 34.615 0.00 0.00 0.00 1.89
252 253 8.269317 TCACATTTATTTACGGAGGGAGTATTT 58.731 33.333 0.00 0.00 0.00 1.40
253 254 9.550406 CACATTTATTTACGGAGGGAGTATTTA 57.450 33.333 0.00 0.00 0.00 1.40
260 261 9.916360 ATTTACGGAGGGAGTATTTAAGAATTT 57.084 29.630 0.00 0.00 0.00 1.82
261 262 9.743581 TTTACGGAGGGAGTATTTAAGAATTTT 57.256 29.630 0.00 0.00 0.00 1.82
264 265 9.916360 ACGGAGGGAGTATTTAAGAATTTTATT 57.084 29.630 0.00 0.00 0.00 1.40
283 284 9.880157 ATTTTATTTTGCATGATTTCTACTGCT 57.120 25.926 0.00 0.00 35.66 4.24
284 285 9.709495 TTTTATTTTGCATGATTTCTACTGCTT 57.291 25.926 0.00 0.00 35.66 3.91
285 286 8.692110 TTATTTTGCATGATTTCTACTGCTTG 57.308 30.769 0.00 0.00 35.66 4.01
286 287 5.710513 TTTGCATGATTTCTACTGCTTGT 57.289 34.783 0.00 0.00 35.66 3.16
287 288 6.816134 TTTGCATGATTTCTACTGCTTGTA 57.184 33.333 0.00 0.00 35.66 2.41
288 289 7.395190 TTTGCATGATTTCTACTGCTTGTAT 57.605 32.000 0.00 0.00 35.66 2.29
289 290 7.395190 TTGCATGATTTCTACTGCTTGTATT 57.605 32.000 0.00 0.00 35.66 1.89
290 291 8.504812 TTGCATGATTTCTACTGCTTGTATTA 57.495 30.769 0.00 0.00 35.66 0.98
291 292 7.919690 TGCATGATTTCTACTGCTTGTATTAC 58.080 34.615 0.00 0.00 35.66 1.89
292 293 7.552330 TGCATGATTTCTACTGCTTGTATTACA 59.448 33.333 0.00 0.00 35.66 2.41
293 294 8.562892 GCATGATTTCTACTGCTTGTATTACAT 58.437 33.333 0.00 0.00 0.00 2.29
300 301 9.891828 TTCTACTGCTTGTATTACATTTTTGTG 57.108 29.630 0.00 0.00 0.00 3.33
301 302 9.278978 TCTACTGCTTGTATTACATTTTTGTGA 57.721 29.630 0.00 0.00 0.00 3.58
302 303 9.546909 CTACTGCTTGTATTACATTTTTGTGAG 57.453 33.333 0.00 0.00 0.00 3.51
303 304 8.165239 ACTGCTTGTATTACATTTTTGTGAGA 57.835 30.769 0.00 0.00 0.00 3.27
304 305 8.629158 ACTGCTTGTATTACATTTTTGTGAGAA 58.371 29.630 0.00 0.00 0.00 2.87
305 306 9.462174 CTGCTTGTATTACATTTTTGTGAGAAA 57.538 29.630 0.00 0.00 0.00 2.52
306 307 9.462174 TGCTTGTATTACATTTTTGTGAGAAAG 57.538 29.630 0.00 0.00 0.00 2.62
307 308 9.463443 GCTTGTATTACATTTTTGTGAGAAAGT 57.537 29.630 0.00 0.00 0.00 2.66
314 315 9.781834 TTACATTTTTGTGAGAAAGTTGTGTAG 57.218 29.630 3.39 0.00 0.00 2.74
315 316 7.826690 ACATTTTTGTGAGAAAGTTGTGTAGT 58.173 30.769 0.00 0.00 0.00 2.73
316 317 7.968405 ACATTTTTGTGAGAAAGTTGTGTAGTC 59.032 33.333 0.00 0.00 0.00 2.59
317 318 7.441890 TTTTTGTGAGAAAGTTGTGTAGTCA 57.558 32.000 0.00 0.00 0.00 3.41
318 319 7.441890 TTTTGTGAGAAAGTTGTGTAGTCAA 57.558 32.000 0.00 0.00 0.00 3.18
319 320 7.624360 TTTGTGAGAAAGTTGTGTAGTCAAT 57.376 32.000 0.00 0.00 0.00 2.57
320 321 7.624360 TTGTGAGAAAGTTGTGTAGTCAATT 57.376 32.000 0.00 0.00 0.00 2.32
321 322 7.015226 TGTGAGAAAGTTGTGTAGTCAATTG 57.985 36.000 0.00 0.00 0.00 2.32
322 323 6.821160 TGTGAGAAAGTTGTGTAGTCAATTGA 59.179 34.615 3.38 3.38 0.00 2.57
323 324 7.498900 TGTGAGAAAGTTGTGTAGTCAATTGAT 59.501 33.333 12.12 3.70 0.00 2.57
324 325 8.345565 GTGAGAAAGTTGTGTAGTCAATTGATT 58.654 33.333 12.12 10.23 0.00 2.57
325 326 9.554395 TGAGAAAGTTGTGTAGTCAATTGATTA 57.446 29.630 12.12 9.10 0.00 1.75
329 330 9.912634 AAAGTTGTGTAGTCAATTGATTATTGG 57.087 29.630 12.12 0.00 43.19 3.16
330 331 8.635765 AGTTGTGTAGTCAATTGATTATTGGT 57.364 30.769 12.12 0.00 43.19 3.67
331 332 9.077885 AGTTGTGTAGTCAATTGATTATTGGTT 57.922 29.630 12.12 0.00 43.19 3.67
332 333 9.341899 GTTGTGTAGTCAATTGATTATTGGTTC 57.658 33.333 12.12 0.00 43.19 3.62
333 334 8.628630 TGTGTAGTCAATTGATTATTGGTTCA 57.371 30.769 12.12 2.36 43.19 3.18
334 335 8.729756 TGTGTAGTCAATTGATTATTGGTTCAG 58.270 33.333 12.12 0.00 43.19 3.02
335 336 8.730680 GTGTAGTCAATTGATTATTGGTTCAGT 58.269 33.333 12.12 0.00 43.19 3.41
336 337 8.729756 TGTAGTCAATTGATTATTGGTTCAGTG 58.270 33.333 12.12 0.00 43.19 3.66
337 338 6.624423 AGTCAATTGATTATTGGTTCAGTGC 58.376 36.000 12.12 0.00 43.19 4.40
338 339 6.209192 AGTCAATTGATTATTGGTTCAGTGCA 59.791 34.615 12.12 0.00 43.19 4.57
339 340 6.867816 GTCAATTGATTATTGGTTCAGTGCAA 59.132 34.615 12.12 0.00 43.19 4.08
340 341 7.384660 GTCAATTGATTATTGGTTCAGTGCAAA 59.615 33.333 12.12 0.00 43.19 3.68
341 342 7.930325 TCAATTGATTATTGGTTCAGTGCAAAA 59.070 29.630 3.38 0.00 43.19 2.44
342 343 7.894376 ATTGATTATTGGTTCAGTGCAAAAG 57.106 32.000 0.00 0.00 0.00 2.27
343 344 6.647334 TGATTATTGGTTCAGTGCAAAAGA 57.353 33.333 0.00 0.00 0.00 2.52
344 345 7.048629 TGATTATTGGTTCAGTGCAAAAGAA 57.951 32.000 0.00 0.00 0.00 2.52
345 346 7.495901 TGATTATTGGTTCAGTGCAAAAGAAA 58.504 30.769 0.00 0.00 0.00 2.52
346 347 7.984050 TGATTATTGGTTCAGTGCAAAAGAAAA 59.016 29.630 0.00 0.00 0.00 2.29
347 348 8.729805 ATTATTGGTTCAGTGCAAAAGAAAAA 57.270 26.923 0.00 0.00 0.00 1.94
348 349 6.667007 ATTGGTTCAGTGCAAAAGAAAAAG 57.333 33.333 0.00 0.00 0.00 2.27
349 350 5.398603 TGGTTCAGTGCAAAAGAAAAAGA 57.601 34.783 0.00 0.00 0.00 2.52
350 351 5.976458 TGGTTCAGTGCAAAAGAAAAAGAT 58.024 33.333 0.00 0.00 0.00 2.40
351 352 6.405538 TGGTTCAGTGCAAAAGAAAAAGATT 58.594 32.000 0.00 0.00 0.00 2.40
352 353 7.551585 TGGTTCAGTGCAAAAGAAAAAGATTA 58.448 30.769 0.00 0.00 0.00 1.75
353 354 8.203485 TGGTTCAGTGCAAAAGAAAAAGATTAT 58.797 29.630 0.00 0.00 0.00 1.28
354 355 9.045223 GGTTCAGTGCAAAAGAAAAAGATTATT 57.955 29.630 0.00 0.00 0.00 1.40
355 356 9.853921 GTTCAGTGCAAAAGAAAAAGATTATTG 57.146 29.630 0.00 0.00 0.00 1.90
356 357 8.592105 TCAGTGCAAAAGAAAAAGATTATTGG 57.408 30.769 0.00 0.00 0.00 3.16
357 358 8.203485 TCAGTGCAAAAGAAAAAGATTATTGGT 58.797 29.630 0.00 0.00 0.00 3.67
358 359 8.829612 CAGTGCAAAAGAAAAAGATTATTGGTT 58.170 29.630 0.00 0.00 0.00 3.67
359 360 8.829612 AGTGCAAAAGAAAAAGATTATTGGTTG 58.170 29.630 0.00 0.00 0.00 3.77
360 361 7.587392 GTGCAAAAGAAAAAGATTATTGGTTGC 59.413 33.333 0.00 0.00 37.55 4.17
361 362 7.498570 TGCAAAAGAAAAAGATTATTGGTTGCT 59.501 29.630 0.00 0.00 37.82 3.91
362 363 7.799914 GCAAAAGAAAAAGATTATTGGTTGCTG 59.200 33.333 0.00 0.00 34.96 4.41
363 364 9.044150 CAAAAGAAAAAGATTATTGGTTGCTGA 57.956 29.630 0.00 0.00 0.00 4.26
364 365 9.783081 AAAAGAAAAAGATTATTGGTTGCTGAT 57.217 25.926 0.00 0.00 0.00 2.90
365 366 8.992835 AAGAAAAAGATTATTGGTTGCTGATC 57.007 30.769 0.00 0.00 0.00 2.92
366 367 7.550712 AGAAAAAGATTATTGGTTGCTGATCC 58.449 34.615 0.00 0.00 0.00 3.36
367 368 5.859205 AAAGATTATTGGTTGCTGATCCC 57.141 39.130 0.00 0.00 0.00 3.85
368 369 4.524802 AGATTATTGGTTGCTGATCCCA 57.475 40.909 0.00 0.00 0.00 4.37
369 370 4.210331 AGATTATTGGTTGCTGATCCCAC 58.790 43.478 0.00 0.00 0.00 4.61
370 371 2.036958 TATTGGTTGCTGATCCCACG 57.963 50.000 0.00 0.00 0.00 4.94
371 372 0.680921 ATTGGTTGCTGATCCCACGG 60.681 55.000 0.00 0.00 0.00 4.94
372 373 1.773856 TTGGTTGCTGATCCCACGGA 61.774 55.000 0.00 0.00 35.55 4.69
373 374 1.224592 GGTTGCTGATCCCACGGAT 59.775 57.895 0.00 0.00 46.28 4.18
374 375 0.394352 GGTTGCTGATCCCACGGATT 60.394 55.000 0.00 0.00 43.27 3.01
375 376 1.134220 GGTTGCTGATCCCACGGATTA 60.134 52.381 0.00 0.00 43.27 1.75
376 377 2.639065 GTTGCTGATCCCACGGATTAA 58.361 47.619 0.00 0.00 43.27 1.40
377 378 3.214328 GTTGCTGATCCCACGGATTAAT 58.786 45.455 0.00 0.00 43.27 1.40
378 379 3.576078 TGCTGATCCCACGGATTAATT 57.424 42.857 0.00 0.00 43.27 1.40
379 380 3.897239 TGCTGATCCCACGGATTAATTT 58.103 40.909 0.00 0.00 43.27 1.82
380 381 3.631686 TGCTGATCCCACGGATTAATTTG 59.368 43.478 0.00 0.00 43.27 2.32
381 382 3.632145 GCTGATCCCACGGATTAATTTGT 59.368 43.478 0.00 0.00 43.27 2.83
382 383 4.498009 GCTGATCCCACGGATTAATTTGTG 60.498 45.833 11.89 11.89 43.27 3.33
383 384 4.594970 TGATCCCACGGATTAATTTGTGT 58.405 39.130 15.61 2.81 43.27 3.72
384 385 4.638421 TGATCCCACGGATTAATTTGTGTC 59.362 41.667 15.61 9.84 43.27 3.67
385 386 3.004171 TCCCACGGATTAATTTGTGTCG 58.996 45.455 15.61 8.55 0.00 4.35
386 387 2.745281 CCCACGGATTAATTTGTGTCGT 59.255 45.455 15.61 6.31 0.00 4.34
387 388 3.933955 CCCACGGATTAATTTGTGTCGTA 59.066 43.478 15.61 0.00 0.00 3.43
388 389 4.573201 CCCACGGATTAATTTGTGTCGTAT 59.427 41.667 15.61 0.00 0.00 3.06
389 390 5.498159 CCACGGATTAATTTGTGTCGTATG 58.502 41.667 15.61 1.59 0.00 2.39
396 397 0.793861 TTTGTGTCGTATGCCGCTTC 59.206 50.000 0.00 0.00 36.19 3.86
404 405 2.094182 TCGTATGCCGCTTCTTCTTCTT 60.094 45.455 0.00 0.00 36.19 2.52
491 497 3.827876 TCACCAGTCGTTATTACCTGTGA 59.172 43.478 0.00 0.00 0.00 3.58
522 528 3.361158 CCACGCGTTCCCATGCAA 61.361 61.111 10.22 0.00 34.13 4.08
523 529 2.699768 CCACGCGTTCCCATGCAAT 61.700 57.895 10.22 0.00 34.13 3.56
524 530 1.514657 CACGCGTTCCCATGCAATG 60.515 57.895 10.22 0.00 46.21 2.82
525 531 2.580326 CGCGTTCCCATGCAATGC 60.580 61.111 0.00 0.00 44.97 3.56
537 543 0.469705 TGCAATGCAAACCCCTGACT 60.470 50.000 5.01 0.00 34.76 3.41
574 589 4.214758 GCCAAAAAGAAATCAGCAAGCAAT 59.785 37.500 0.00 0.00 0.00 3.56
596 612 1.448119 TTTCGTGCATCCAACGGCAA 61.448 50.000 0.00 0.00 42.45 4.52
598 614 2.568090 GTGCATCCAACGGCAAGG 59.432 61.111 0.00 0.00 42.45 3.61
669 704 2.281484 CGTCCACCAACACCCAGG 60.281 66.667 0.00 0.00 0.00 4.45
767 810 1.486310 TCCTCCTCAATCCAATCCACG 59.514 52.381 0.00 0.00 0.00 4.94
769 812 2.555199 CTCCTCAATCCAATCCACGAC 58.445 52.381 0.00 0.00 0.00 4.34
771 814 1.065491 CCTCAATCCAATCCACGACCA 60.065 52.381 0.00 0.00 0.00 4.02
773 816 1.094785 CAATCCAATCCACGACCACC 58.905 55.000 0.00 0.00 0.00 4.61
774 817 0.695924 AATCCAATCCACGACCACCA 59.304 50.000 0.00 0.00 0.00 4.17
775 818 0.253044 ATCCAATCCACGACCACCAG 59.747 55.000 0.00 0.00 0.00 4.00
778 821 3.268103 AATCCACGACCACCAGCCC 62.268 63.158 0.00 0.00 0.00 5.19
804 847 2.358737 CCCAGCGACAACTCACCC 60.359 66.667 0.00 0.00 0.00 4.61
842 885 0.445043 CGGTTTTACTTGGCTACCGC 59.555 55.000 0.00 0.00 44.22 5.68
917 962 4.240103 CGCATCCCGCTCCATCCA 62.240 66.667 0.00 0.00 39.08 3.41
923 968 4.240103 CCGCTCCATCCATCGCCA 62.240 66.667 0.00 0.00 0.00 5.69
934 980 4.344865 ATCGCCACACACCCACCC 62.345 66.667 0.00 0.00 0.00 4.61
977 1023 4.200283 GCCGAGCTCTGACCGGAG 62.200 72.222 9.46 0.00 45.58 4.63
990 1036 3.812019 CGGAGGACGGACAGACGG 61.812 72.222 0.00 0.00 39.42 4.79
991 1037 2.360852 GGAGGACGGACAGACGGA 60.361 66.667 0.00 0.00 38.39 4.69
992 1038 2.698763 GGAGGACGGACAGACGGAC 61.699 68.421 0.00 0.00 38.39 4.79
993 1039 3.036783 GAGGACGGACAGACGGACG 62.037 68.421 0.00 0.00 38.39 4.79
994 1040 3.052082 GGACGGACAGACGGACGA 61.052 66.667 0.00 0.00 38.39 4.20
1040 1086 4.415150 CCTCCTGCCGCACCACAT 62.415 66.667 0.00 0.00 0.00 3.21
1045 1100 4.262089 TGCCGCACCACATCCACA 62.262 61.111 0.00 0.00 0.00 4.17
1057 1112 1.276421 ACATCCACAACGAGGAGAAGG 59.724 52.381 0.00 0.00 38.83 3.46
1068 1123 2.185608 GAGAAGGAGCAGGCGGAC 59.814 66.667 0.00 0.00 0.00 4.79
1179 1252 2.125350 GCCTTCGTCTCCTGCCTG 60.125 66.667 0.00 0.00 0.00 4.85
1185 1258 2.899505 GTCTCCTGCCTGCTCCTC 59.100 66.667 0.00 0.00 0.00 3.71
1743 1834 4.194720 CTCTCCGACTTCCCGCCG 62.195 72.222 0.00 0.00 0.00 6.46
1764 1855 0.040692 TCGACTTCTCCAACGACACG 60.041 55.000 0.00 0.00 0.00 4.49
1973 2088 1.702299 CGGCACTAGCGAAGAAACG 59.298 57.895 0.00 0.00 43.41 3.60
2334 2449 0.105039 CCTACAAGATCCTGCCGTCC 59.895 60.000 0.00 0.00 0.00 4.79
2499 2614 4.271816 CTGCGCGAGGCCTACGAT 62.272 66.667 27.12 0.00 42.61 3.73
2653 2777 8.710835 AAAAATATTTTTGTTGTTCACGAGGT 57.289 26.923 22.30 0.00 38.81 3.85
2670 2794 3.368843 CGAGGTGAGTGAGATTGGTGATT 60.369 47.826 0.00 0.00 0.00 2.57
2671 2795 3.937706 GAGGTGAGTGAGATTGGTGATTG 59.062 47.826 0.00 0.00 0.00 2.67
2672 2796 3.584406 AGGTGAGTGAGATTGGTGATTGA 59.416 43.478 0.00 0.00 0.00 2.57
2673 2797 3.686726 GGTGAGTGAGATTGGTGATTGAC 59.313 47.826 0.00 0.00 0.00 3.18
2674 2798 4.318332 GTGAGTGAGATTGGTGATTGACA 58.682 43.478 0.00 0.00 0.00 3.58
2675 2799 4.756642 GTGAGTGAGATTGGTGATTGACAA 59.243 41.667 0.00 0.00 0.00 3.18
2676 2800 5.413833 GTGAGTGAGATTGGTGATTGACAAT 59.586 40.000 0.00 0.00 39.81 2.71
2677 2801 6.005823 TGAGTGAGATTGGTGATTGACAATT 58.994 36.000 1.39 0.00 37.43 2.32
2678 2802 7.119699 GTGAGTGAGATTGGTGATTGACAATTA 59.880 37.037 1.39 0.00 37.43 1.40
2702 2826 5.306532 AGTTAGCATGTGCAAGATTCTTG 57.693 39.130 19.92 19.92 45.16 3.02
2771 2896 2.422832 AGAGTCTAAGTAAACGCCTCCG 59.577 50.000 0.00 0.00 41.14 4.63
2869 2994 1.056700 AAGGGGATGCTATGACGGCT 61.057 55.000 0.00 0.00 0.00 5.52
2897 3022 2.313172 GCGATCGCGAATGGCAGAT 61.313 57.895 26.12 0.00 43.84 2.90
3035 3160 3.087065 GGCCTGGCCTTTGTCCTA 58.913 61.111 30.42 0.00 46.69 2.94
3163 3289 1.971505 CTGCTCCGGCCTTGATGGTA 61.972 60.000 0.00 0.00 38.35 3.25
3169 3295 0.319900 CGGCCTTGATGGTATCTCGG 60.320 60.000 0.00 0.00 38.35 4.63
3440 3566 1.339055 CCAGTCGGCTTTCATCAAGGA 60.339 52.381 0.00 0.00 32.37 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.623811 ACCTCCATCGCAACAACTACT 59.376 47.619 0.00 0.00 0.00 2.57
1 2 1.732259 CACCTCCATCGCAACAACTAC 59.268 52.381 0.00 0.00 0.00 2.73
2 3 1.943968 GCACCTCCATCGCAACAACTA 60.944 52.381 0.00 0.00 0.00 2.24
3 4 1.237285 GCACCTCCATCGCAACAACT 61.237 55.000 0.00 0.00 0.00 3.16
4 5 1.210155 GCACCTCCATCGCAACAAC 59.790 57.895 0.00 0.00 0.00 3.32
5 6 1.971167 GGCACCTCCATCGCAACAA 60.971 57.895 0.00 0.00 34.01 2.83
6 7 2.359850 GGCACCTCCATCGCAACA 60.360 61.111 0.00 0.00 34.01 3.33
7 8 1.675641 AAGGCACCTCCATCGCAAC 60.676 57.895 0.00 0.00 37.29 4.17
8 9 1.675310 CAAGGCACCTCCATCGCAA 60.675 57.895 0.00 0.00 37.29 4.85
9 10 2.046023 CAAGGCACCTCCATCGCA 60.046 61.111 0.00 0.00 37.29 5.10
10 11 2.825836 CCAAGGCACCTCCATCGC 60.826 66.667 0.00 0.00 37.29 4.58
11 12 1.002134 AACCAAGGCACCTCCATCG 60.002 57.895 0.00 0.00 37.29 3.84
12 13 0.038166 TCAACCAAGGCACCTCCATC 59.962 55.000 0.00 0.00 37.29 3.51
13 14 0.706433 ATCAACCAAGGCACCTCCAT 59.294 50.000 0.00 0.00 37.29 3.41
14 15 0.038166 GATCAACCAAGGCACCTCCA 59.962 55.000 0.00 0.00 37.29 3.86
15 16 0.038166 TGATCAACCAAGGCACCTCC 59.962 55.000 0.00 0.00 0.00 4.30
16 17 1.747355 CATGATCAACCAAGGCACCTC 59.253 52.381 0.00 0.00 0.00 3.85
17 18 1.355381 TCATGATCAACCAAGGCACCT 59.645 47.619 0.00 0.00 0.00 4.00
18 19 1.474077 GTCATGATCAACCAAGGCACC 59.526 52.381 0.00 0.00 0.00 5.01
19 20 1.131126 CGTCATGATCAACCAAGGCAC 59.869 52.381 0.00 0.00 0.00 5.01
20 21 1.452110 CGTCATGATCAACCAAGGCA 58.548 50.000 0.00 0.00 0.00 4.75
21 22 0.099436 GCGTCATGATCAACCAAGGC 59.901 55.000 0.00 0.00 0.00 4.35
22 23 1.452110 TGCGTCATGATCAACCAAGG 58.548 50.000 0.00 0.00 0.00 3.61
23 24 3.770263 ATTGCGTCATGATCAACCAAG 57.230 42.857 13.35 0.00 0.00 3.61
24 25 3.255395 ACAATTGCGTCATGATCAACCAA 59.745 39.130 5.05 2.10 0.00 3.67
25 26 2.819019 ACAATTGCGTCATGATCAACCA 59.181 40.909 5.05 0.00 0.00 3.67
26 27 3.173599 CACAATTGCGTCATGATCAACC 58.826 45.455 5.05 0.00 0.00 3.77
27 28 3.605056 CACACAATTGCGTCATGATCAAC 59.395 43.478 5.05 0.00 0.00 3.18
28 29 3.252944 ACACACAATTGCGTCATGATCAA 59.747 39.130 5.05 13.43 0.00 2.57
29 30 2.813172 ACACACAATTGCGTCATGATCA 59.187 40.909 5.05 0.00 0.00 2.92
30 31 3.419915 GACACACAATTGCGTCATGATC 58.580 45.455 5.05 0.00 35.26 2.92
31 32 2.162208 GGACACACAATTGCGTCATGAT 59.838 45.455 19.17 1.61 36.64 2.45
32 33 1.535028 GGACACACAATTGCGTCATGA 59.465 47.619 19.17 0.00 36.64 3.07
33 34 1.401409 GGGACACACAATTGCGTCATG 60.401 52.381 19.17 8.11 36.64 3.07
34 35 0.881118 GGGACACACAATTGCGTCAT 59.119 50.000 19.17 3.35 36.64 3.06
35 36 1.502990 CGGGACACACAATTGCGTCA 61.503 55.000 19.17 0.00 36.64 4.35
36 37 1.206578 CGGGACACACAATTGCGTC 59.793 57.895 5.05 9.76 34.54 5.19
37 38 1.503818 GACGGGACACACAATTGCGT 61.504 55.000 5.05 5.00 0.00 5.24
38 39 1.206578 GACGGGACACACAATTGCG 59.793 57.895 5.05 0.00 0.00 4.85
39 40 0.951558 AAGACGGGACACACAATTGC 59.048 50.000 5.05 0.00 0.00 3.56
40 41 1.946768 ACAAGACGGGACACACAATTG 59.053 47.619 3.24 3.24 0.00 2.32
41 42 2.341846 ACAAGACGGGACACACAATT 57.658 45.000 0.00 0.00 0.00 2.32
42 43 1.946768 CAACAAGACGGGACACACAAT 59.053 47.619 0.00 0.00 0.00 2.71
43 44 1.374560 CAACAAGACGGGACACACAA 58.625 50.000 0.00 0.00 0.00 3.33
44 45 1.092921 GCAACAAGACGGGACACACA 61.093 55.000 0.00 0.00 0.00 3.72
45 46 1.647084 GCAACAAGACGGGACACAC 59.353 57.895 0.00 0.00 0.00 3.82
46 47 1.525077 GGCAACAAGACGGGACACA 60.525 57.895 0.00 0.00 0.00 3.72
47 48 0.818040 AAGGCAACAAGACGGGACAC 60.818 55.000 0.00 0.00 41.41 3.67
48 49 0.106918 AAAGGCAACAAGACGGGACA 60.107 50.000 0.00 0.00 41.41 4.02
49 50 1.029681 AAAAGGCAACAAGACGGGAC 58.970 50.000 0.00 0.00 41.41 4.46
50 51 1.028905 CAAAAGGCAACAAGACGGGA 58.971 50.000 0.00 0.00 41.41 5.14
51 52 0.744281 ACAAAAGGCAACAAGACGGG 59.256 50.000 0.00 0.00 41.41 5.28
52 53 1.535860 CCACAAAAGGCAACAAGACGG 60.536 52.381 0.00 0.00 41.41 4.79
53 54 1.838913 CCACAAAAGGCAACAAGACG 58.161 50.000 0.00 0.00 41.41 4.18
63 64 1.547372 CCAATCTCCAGCCACAAAAGG 59.453 52.381 0.00 0.00 0.00 3.11
64 65 1.547372 CCCAATCTCCAGCCACAAAAG 59.453 52.381 0.00 0.00 0.00 2.27
65 66 1.631405 CCCAATCTCCAGCCACAAAA 58.369 50.000 0.00 0.00 0.00 2.44
66 67 0.899717 GCCCAATCTCCAGCCACAAA 60.900 55.000 0.00 0.00 0.00 2.83
67 68 1.304381 GCCCAATCTCCAGCCACAA 60.304 57.895 0.00 0.00 0.00 3.33
68 69 2.356278 GCCCAATCTCCAGCCACA 59.644 61.111 0.00 0.00 0.00 4.17
69 70 2.825836 CGCCCAATCTCCAGCCAC 60.826 66.667 0.00 0.00 0.00 5.01
70 71 3.008517 TCGCCCAATCTCCAGCCA 61.009 61.111 0.00 0.00 0.00 4.75
71 72 2.514824 GTCGCCCAATCTCCAGCC 60.515 66.667 0.00 0.00 0.00 4.85
72 73 2.892425 CGTCGCCCAATCTCCAGC 60.892 66.667 0.00 0.00 0.00 4.85
73 74 2.202932 CCGTCGCCCAATCTCCAG 60.203 66.667 0.00 0.00 0.00 3.86
74 75 4.467084 GCCGTCGCCCAATCTCCA 62.467 66.667 0.00 0.00 0.00 3.86
75 76 3.969250 TTGCCGTCGCCCAATCTCC 62.969 63.158 0.00 0.00 0.00 3.71
76 77 1.582610 TTTTGCCGTCGCCCAATCTC 61.583 55.000 0.00 0.00 0.00 2.75
77 78 0.965363 ATTTTGCCGTCGCCCAATCT 60.965 50.000 0.00 0.00 0.00 2.40
78 79 0.108851 AATTTTGCCGTCGCCCAATC 60.109 50.000 0.00 0.00 0.00 2.67
79 80 0.320050 AAATTTTGCCGTCGCCCAAT 59.680 45.000 0.00 0.00 0.00 3.16
80 81 0.319125 GAAATTTTGCCGTCGCCCAA 60.319 50.000 0.00 0.00 0.00 4.12
81 82 1.175983 AGAAATTTTGCCGTCGCCCA 61.176 50.000 0.00 0.00 0.00 5.36
82 83 0.038618 AAGAAATTTTGCCGTCGCCC 60.039 50.000 0.00 0.00 0.00 6.13
83 84 1.059942 CAAGAAATTTTGCCGTCGCC 58.940 50.000 0.00 0.00 0.00 5.54
84 85 1.451651 CACAAGAAATTTTGCCGTCGC 59.548 47.619 0.00 0.00 0.00 5.19
85 86 2.467305 CACACAAGAAATTTTGCCGTCG 59.533 45.455 0.00 0.00 0.00 5.12
86 87 3.443976 ACACACAAGAAATTTTGCCGTC 58.556 40.909 0.00 0.00 0.00 4.79
87 88 3.443976 GACACACAAGAAATTTTGCCGT 58.556 40.909 0.00 0.00 0.00 5.68
88 89 2.467305 CGACACACAAGAAATTTTGCCG 59.533 45.455 0.00 0.00 0.00 5.69
89 90 2.218530 GCGACACACAAGAAATTTTGCC 59.781 45.455 0.00 0.00 0.00 4.52
90 91 2.857152 TGCGACACACAAGAAATTTTGC 59.143 40.909 0.00 0.00 0.00 3.68
91 92 5.425398 CATTGCGACACACAAGAAATTTTG 58.575 37.500 0.00 0.00 0.00 2.44
92 93 4.507388 CCATTGCGACACACAAGAAATTTT 59.493 37.500 0.00 0.00 0.00 1.82
93 94 4.050553 CCATTGCGACACACAAGAAATTT 58.949 39.130 0.00 0.00 0.00 1.82
94 95 3.317711 TCCATTGCGACACACAAGAAATT 59.682 39.130 0.00 0.00 0.00 1.82
95 96 2.884012 TCCATTGCGACACACAAGAAAT 59.116 40.909 0.00 0.00 0.00 2.17
96 97 2.293170 TCCATTGCGACACACAAGAAA 58.707 42.857 0.00 0.00 0.00 2.52
97 98 1.960417 TCCATTGCGACACACAAGAA 58.040 45.000 0.00 0.00 0.00 2.52
98 99 2.183478 ATCCATTGCGACACACAAGA 57.817 45.000 0.00 0.00 0.00 3.02
99 100 2.981805 CAAATCCATTGCGACACACAAG 59.018 45.455 0.00 0.00 31.00 3.16
100 101 2.288091 CCAAATCCATTGCGACACACAA 60.288 45.455 0.00 0.00 37.73 3.33
101 102 1.269174 CCAAATCCATTGCGACACACA 59.731 47.619 0.00 0.00 37.73 3.72
102 103 1.269448 ACCAAATCCATTGCGACACAC 59.731 47.619 0.00 0.00 37.73 3.82
103 104 1.614996 ACCAAATCCATTGCGACACA 58.385 45.000 0.00 0.00 37.73 3.72
104 105 2.288152 ACAACCAAATCCATTGCGACAC 60.288 45.455 0.00 0.00 37.73 3.67
105 106 1.959985 ACAACCAAATCCATTGCGACA 59.040 42.857 0.00 0.00 37.73 4.35
106 107 2.723124 ACAACCAAATCCATTGCGAC 57.277 45.000 0.00 0.00 37.73 5.19
107 108 3.190327 CACTACAACCAAATCCATTGCGA 59.810 43.478 0.00 0.00 37.73 5.10
108 109 3.190327 TCACTACAACCAAATCCATTGCG 59.810 43.478 0.00 0.00 37.73 4.85
109 110 4.485163 GTCACTACAACCAAATCCATTGC 58.515 43.478 0.00 0.00 37.73 3.56
110 111 4.379394 CCGTCACTACAACCAAATCCATTG 60.379 45.833 0.00 0.00 38.84 2.82
111 112 3.756434 CCGTCACTACAACCAAATCCATT 59.244 43.478 0.00 0.00 0.00 3.16
112 113 3.244770 ACCGTCACTACAACCAAATCCAT 60.245 43.478 0.00 0.00 0.00 3.41
113 114 2.105134 ACCGTCACTACAACCAAATCCA 59.895 45.455 0.00 0.00 0.00 3.41
114 115 2.774687 ACCGTCACTACAACCAAATCC 58.225 47.619 0.00 0.00 0.00 3.01
115 116 4.563061 AGTACCGTCACTACAACCAAATC 58.437 43.478 0.00 0.00 0.00 2.17
116 117 4.612264 AGTACCGTCACTACAACCAAAT 57.388 40.909 0.00 0.00 0.00 2.32
117 118 4.022068 CCTAGTACCGTCACTACAACCAAA 60.022 45.833 0.00 0.00 0.00 3.28
118 119 3.507233 CCTAGTACCGTCACTACAACCAA 59.493 47.826 0.00 0.00 0.00 3.67
119 120 3.084039 CCTAGTACCGTCACTACAACCA 58.916 50.000 0.00 0.00 0.00 3.67
120 121 3.347216 TCCTAGTACCGTCACTACAACC 58.653 50.000 0.00 0.00 0.00 3.77
121 122 5.573337 ATTCCTAGTACCGTCACTACAAC 57.427 43.478 0.00 0.00 0.00 3.32
122 123 5.711506 TGAATTCCTAGTACCGTCACTACAA 59.288 40.000 2.27 0.00 0.00 2.41
123 124 5.255687 TGAATTCCTAGTACCGTCACTACA 58.744 41.667 2.27 0.00 0.00 2.74
124 125 5.824904 TGAATTCCTAGTACCGTCACTAC 57.175 43.478 2.27 0.00 0.00 2.73
125 126 6.604396 TGATTGAATTCCTAGTACCGTCACTA 59.396 38.462 2.27 0.00 0.00 2.74
126 127 5.421056 TGATTGAATTCCTAGTACCGTCACT 59.579 40.000 2.27 0.00 0.00 3.41
127 128 5.519206 GTGATTGAATTCCTAGTACCGTCAC 59.481 44.000 2.27 1.34 0.00 3.67
128 129 5.657474 GTGATTGAATTCCTAGTACCGTCA 58.343 41.667 2.27 0.00 0.00 4.35
129 130 4.738740 CGTGATTGAATTCCTAGTACCGTC 59.261 45.833 2.27 0.00 0.00 4.79
130 131 4.679662 CGTGATTGAATTCCTAGTACCGT 58.320 43.478 2.27 0.00 0.00 4.83
131 132 3.489785 GCGTGATTGAATTCCTAGTACCG 59.510 47.826 2.27 0.00 0.00 4.02
132 133 3.489785 CGCGTGATTGAATTCCTAGTACC 59.510 47.826 2.27 0.00 0.00 3.34
133 134 4.110482 ACGCGTGATTGAATTCCTAGTAC 58.890 43.478 12.93 0.00 0.00 2.73
134 135 4.380841 ACGCGTGATTGAATTCCTAGTA 57.619 40.909 12.93 0.00 0.00 1.82
135 136 3.247006 ACGCGTGATTGAATTCCTAGT 57.753 42.857 12.93 0.00 0.00 2.57
136 137 4.360563 ACTACGCGTGATTGAATTCCTAG 58.639 43.478 24.59 8.74 0.00 3.02
137 138 4.142337 TGACTACGCGTGATTGAATTCCTA 60.142 41.667 24.59 0.00 0.00 2.94
138 139 3.187700 GACTACGCGTGATTGAATTCCT 58.812 45.455 24.59 0.00 0.00 3.36
139 140 2.927477 TGACTACGCGTGATTGAATTCC 59.073 45.455 24.59 0.00 0.00 3.01
140 141 3.612860 AGTGACTACGCGTGATTGAATTC 59.387 43.478 24.59 4.86 0.00 2.17
141 142 3.585862 AGTGACTACGCGTGATTGAATT 58.414 40.909 24.59 0.00 0.00 2.17
142 143 3.232213 AGTGACTACGCGTGATTGAAT 57.768 42.857 24.59 0.00 0.00 2.57
143 144 2.717580 AGTGACTACGCGTGATTGAA 57.282 45.000 24.59 0.00 0.00 2.69
144 145 2.030628 TGAAGTGACTACGCGTGATTGA 60.031 45.455 24.59 0.00 0.00 2.57
145 146 2.324860 TGAAGTGACTACGCGTGATTG 58.675 47.619 24.59 11.70 0.00 2.67
146 147 2.717580 TGAAGTGACTACGCGTGATT 57.282 45.000 24.59 5.23 0.00 2.57
147 148 2.717580 TTGAAGTGACTACGCGTGAT 57.282 45.000 24.59 9.79 0.00 3.06
148 149 2.495409 TTTGAAGTGACTACGCGTGA 57.505 45.000 24.59 5.06 0.00 4.35
149 150 3.788434 ATTTTGAAGTGACTACGCGTG 57.212 42.857 24.59 14.48 0.00 5.34
150 151 3.558418 ACAATTTTGAAGTGACTACGCGT 59.442 39.130 19.17 19.17 0.00 6.01
151 152 3.900116 CACAATTTTGAAGTGACTACGCG 59.100 43.478 3.53 3.53 35.33 6.01
152 153 4.844267 ACACAATTTTGAAGTGACTACGC 58.156 39.130 0.00 0.00 37.05 4.42
153 154 7.042992 TGACTACACAATTTTGAAGTGACTACG 60.043 37.037 0.00 0.00 37.05 3.51
154 155 8.138365 TGACTACACAATTTTGAAGTGACTAC 57.862 34.615 0.00 0.00 37.05 2.73
155 156 8.902540 ATGACTACACAATTTTGAAGTGACTA 57.097 30.769 0.00 0.00 37.05 2.59
156 157 7.807977 ATGACTACACAATTTTGAAGTGACT 57.192 32.000 0.00 0.00 37.05 3.41
157 158 9.546909 CATATGACTACACAATTTTGAAGTGAC 57.453 33.333 0.00 0.00 37.05 3.67
158 159 9.283768 ACATATGACTACACAATTTTGAAGTGA 57.716 29.630 10.38 0.00 37.05 3.41
203 204 6.920758 TGAATGTTTAGCGCTGTTGTATTTTT 59.079 30.769 22.90 1.81 0.00 1.94
204 205 6.362283 GTGAATGTTTAGCGCTGTTGTATTTT 59.638 34.615 22.90 3.24 0.00 1.82
205 206 5.856455 GTGAATGTTTAGCGCTGTTGTATTT 59.144 36.000 22.90 4.85 0.00 1.40
206 207 5.049060 TGTGAATGTTTAGCGCTGTTGTATT 60.049 36.000 22.90 13.68 0.00 1.89
207 208 4.454161 TGTGAATGTTTAGCGCTGTTGTAT 59.546 37.500 22.90 5.15 0.00 2.29
208 209 3.810386 TGTGAATGTTTAGCGCTGTTGTA 59.190 39.130 22.90 2.63 0.00 2.41
209 210 2.616376 TGTGAATGTTTAGCGCTGTTGT 59.384 40.909 22.90 0.00 0.00 3.32
210 211 3.266541 TGTGAATGTTTAGCGCTGTTG 57.733 42.857 22.90 0.00 0.00 3.33
211 212 4.503741 AATGTGAATGTTTAGCGCTGTT 57.496 36.364 22.90 6.85 0.00 3.16
212 213 4.503741 AAATGTGAATGTTTAGCGCTGT 57.496 36.364 22.90 0.00 0.00 4.40
213 214 7.510428 AAATAAATGTGAATGTTTAGCGCTG 57.490 32.000 22.90 0.00 0.00 5.18
214 215 7.428183 CGTAAATAAATGTGAATGTTTAGCGCT 59.572 33.333 17.26 17.26 0.00 5.92
215 216 7.305190 CCGTAAATAAATGTGAATGTTTAGCGC 60.305 37.037 0.00 0.00 0.00 5.92
216 217 7.906010 TCCGTAAATAAATGTGAATGTTTAGCG 59.094 33.333 0.00 0.00 0.00 4.26
217 218 9.221775 CTCCGTAAATAAATGTGAATGTTTAGC 57.778 33.333 0.00 0.00 0.00 3.09
218 219 9.716507 CCTCCGTAAATAAATGTGAATGTTTAG 57.283 33.333 0.00 0.00 0.00 1.85
219 220 8.679100 CCCTCCGTAAATAAATGTGAATGTTTA 58.321 33.333 0.00 0.00 0.00 2.01
220 221 7.394923 TCCCTCCGTAAATAAATGTGAATGTTT 59.605 33.333 0.00 0.00 0.00 2.83
221 222 6.887545 TCCCTCCGTAAATAAATGTGAATGTT 59.112 34.615 0.00 0.00 0.00 2.71
222 223 6.419791 TCCCTCCGTAAATAAATGTGAATGT 58.580 36.000 0.00 0.00 0.00 2.71
223 224 6.542370 ACTCCCTCCGTAAATAAATGTGAATG 59.458 38.462 0.00 0.00 0.00 2.67
224 225 6.659824 ACTCCCTCCGTAAATAAATGTGAAT 58.340 36.000 0.00 0.00 0.00 2.57
225 226 6.057321 ACTCCCTCCGTAAATAAATGTGAA 57.943 37.500 0.00 0.00 0.00 3.18
226 227 5.687166 ACTCCCTCCGTAAATAAATGTGA 57.313 39.130 0.00 0.00 0.00 3.58
227 228 8.446599 AAATACTCCCTCCGTAAATAAATGTG 57.553 34.615 0.00 0.00 0.00 3.21
234 235 9.916360 AAATTCTTAAATACTCCCTCCGTAAAT 57.084 29.630 0.00 0.00 0.00 1.40
235 236 9.743581 AAAATTCTTAAATACTCCCTCCGTAAA 57.256 29.630 0.00 0.00 0.00 2.01
238 239 9.916360 AATAAAATTCTTAAATACTCCCTCCGT 57.084 29.630 0.00 0.00 0.00 4.69
257 258 9.880157 AGCAGTAGAAATCATGCAAAATAAAAT 57.120 25.926 0.00 0.00 41.14 1.82
258 259 9.709495 AAGCAGTAGAAATCATGCAAAATAAAA 57.291 25.926 0.00 0.00 41.14 1.52
259 260 9.142515 CAAGCAGTAGAAATCATGCAAAATAAA 57.857 29.630 0.00 0.00 41.14 1.40
260 261 8.306038 ACAAGCAGTAGAAATCATGCAAAATAA 58.694 29.630 0.00 0.00 41.14 1.40
261 262 7.829725 ACAAGCAGTAGAAATCATGCAAAATA 58.170 30.769 0.00 0.00 41.14 1.40
262 263 6.694447 ACAAGCAGTAGAAATCATGCAAAAT 58.306 32.000 0.00 0.00 41.14 1.82
263 264 6.088016 ACAAGCAGTAGAAATCATGCAAAA 57.912 33.333 0.00 0.00 41.14 2.44
264 265 5.710513 ACAAGCAGTAGAAATCATGCAAA 57.289 34.783 0.00 0.00 41.14 3.68
265 266 7.395190 AATACAAGCAGTAGAAATCATGCAA 57.605 32.000 0.00 0.00 41.14 4.08
266 267 7.552330 TGTAATACAAGCAGTAGAAATCATGCA 59.448 33.333 0.00 0.00 41.14 3.96
267 268 7.919690 TGTAATACAAGCAGTAGAAATCATGC 58.080 34.615 0.00 0.00 35.85 4.06
274 275 9.891828 CACAAAAATGTAATACAAGCAGTAGAA 57.108 29.630 0.00 0.00 35.85 2.10
275 276 9.278978 TCACAAAAATGTAATACAAGCAGTAGA 57.721 29.630 0.00 0.00 35.85 2.59
276 277 9.546909 CTCACAAAAATGTAATACAAGCAGTAG 57.453 33.333 0.00 0.00 35.85 2.57
277 278 9.278978 TCTCACAAAAATGTAATACAAGCAGTA 57.721 29.630 0.00 0.00 37.06 2.74
278 279 8.165239 TCTCACAAAAATGTAATACAAGCAGT 57.835 30.769 0.00 0.00 0.00 4.40
279 280 9.462174 TTTCTCACAAAAATGTAATACAAGCAG 57.538 29.630 0.00 0.00 0.00 4.24
280 281 9.462174 CTTTCTCACAAAAATGTAATACAAGCA 57.538 29.630 0.00 0.00 0.00 3.91
281 282 9.463443 ACTTTCTCACAAAAATGTAATACAAGC 57.537 29.630 0.00 0.00 0.00 4.01
288 289 9.781834 CTACACAACTTTCTCACAAAAATGTAA 57.218 29.630 0.00 0.00 0.00 2.41
289 290 8.952278 ACTACACAACTTTCTCACAAAAATGTA 58.048 29.630 0.00 0.00 0.00 2.29
290 291 7.826690 ACTACACAACTTTCTCACAAAAATGT 58.173 30.769 0.00 0.00 0.00 2.71
291 292 7.967854 TGACTACACAACTTTCTCACAAAAATG 59.032 33.333 0.00 0.00 0.00 2.32
292 293 8.050778 TGACTACACAACTTTCTCACAAAAAT 57.949 30.769 0.00 0.00 0.00 1.82
293 294 7.441890 TGACTACACAACTTTCTCACAAAAA 57.558 32.000 0.00 0.00 0.00 1.94
294 295 7.441890 TTGACTACACAACTTTCTCACAAAA 57.558 32.000 0.00 0.00 0.00 2.44
295 296 7.624360 ATTGACTACACAACTTTCTCACAAA 57.376 32.000 0.00 0.00 32.50 2.83
296 297 7.335673 TCAATTGACTACACAACTTTCTCACAA 59.664 33.333 3.38 0.00 32.50 3.33
297 298 6.821160 TCAATTGACTACACAACTTTCTCACA 59.179 34.615 3.38 0.00 32.50 3.58
298 299 7.246674 TCAATTGACTACACAACTTTCTCAC 57.753 36.000 3.38 0.00 32.50 3.51
299 300 8.450578 AATCAATTGACTACACAACTTTCTCA 57.549 30.769 11.07 0.00 32.50 3.27
303 304 9.912634 CCAATAATCAATTGACTACACAACTTT 57.087 29.630 11.07 0.00 46.81 2.66
304 305 9.077885 ACCAATAATCAATTGACTACACAACTT 57.922 29.630 11.07 0.28 46.81 2.66
305 306 8.635765 ACCAATAATCAATTGACTACACAACT 57.364 30.769 11.07 0.00 46.81 3.16
306 307 9.341899 GAACCAATAATCAATTGACTACACAAC 57.658 33.333 11.07 0.00 46.81 3.32
307 308 9.072375 TGAACCAATAATCAATTGACTACACAA 57.928 29.630 11.07 0.00 46.81 3.33
308 309 8.628630 TGAACCAATAATCAATTGACTACACA 57.371 30.769 11.07 0.51 46.81 3.72
309 310 8.730680 ACTGAACCAATAATCAATTGACTACAC 58.269 33.333 11.07 0.00 46.81 2.90
310 311 8.729756 CACTGAACCAATAATCAATTGACTACA 58.270 33.333 11.07 0.00 46.81 2.74
311 312 7.698130 GCACTGAACCAATAATCAATTGACTAC 59.302 37.037 11.07 0.00 46.81 2.73
312 313 7.392953 TGCACTGAACCAATAATCAATTGACTA 59.607 33.333 11.07 4.36 46.81 2.59
313 314 6.209192 TGCACTGAACCAATAATCAATTGACT 59.791 34.615 11.07 1.53 46.81 3.41
314 315 6.389091 TGCACTGAACCAATAATCAATTGAC 58.611 36.000 11.07 0.00 46.81 3.18
315 316 6.587206 TGCACTGAACCAATAATCAATTGA 57.413 33.333 11.26 11.26 46.81 2.57
316 317 7.655236 TTTGCACTGAACCAATAATCAATTG 57.345 32.000 0.00 0.00 43.99 2.32
317 318 8.149647 TCTTTTGCACTGAACCAATAATCAATT 58.850 29.630 0.00 0.00 0.00 2.32
318 319 7.669427 TCTTTTGCACTGAACCAATAATCAAT 58.331 30.769 0.00 0.00 0.00 2.57
319 320 7.048629 TCTTTTGCACTGAACCAATAATCAA 57.951 32.000 0.00 0.00 0.00 2.57
320 321 6.647334 TCTTTTGCACTGAACCAATAATCA 57.353 33.333 0.00 0.00 0.00 2.57
321 322 7.945033 TTTCTTTTGCACTGAACCAATAATC 57.055 32.000 0.00 0.00 0.00 1.75
322 323 8.729805 TTTTTCTTTTGCACTGAACCAATAAT 57.270 26.923 0.00 0.00 0.00 1.28
323 324 8.037758 TCTTTTTCTTTTGCACTGAACCAATAA 58.962 29.630 0.00 0.00 0.00 1.40
324 325 7.551585 TCTTTTTCTTTTGCACTGAACCAATA 58.448 30.769 0.00 0.00 0.00 1.90
325 326 6.405538 TCTTTTTCTTTTGCACTGAACCAAT 58.594 32.000 0.00 0.00 0.00 3.16
326 327 5.788450 TCTTTTTCTTTTGCACTGAACCAA 58.212 33.333 0.00 0.00 0.00 3.67
327 328 5.398603 TCTTTTTCTTTTGCACTGAACCA 57.601 34.783 0.00 0.00 0.00 3.67
328 329 6.908870 AATCTTTTTCTTTTGCACTGAACC 57.091 33.333 0.00 0.00 0.00 3.62
329 330 9.853921 CAATAATCTTTTTCTTTTGCACTGAAC 57.146 29.630 0.00 0.00 0.00 3.18
330 331 9.044150 CCAATAATCTTTTTCTTTTGCACTGAA 57.956 29.630 0.00 0.00 0.00 3.02
331 332 8.203485 ACCAATAATCTTTTTCTTTTGCACTGA 58.797 29.630 0.00 0.00 0.00 3.41
332 333 8.369218 ACCAATAATCTTTTTCTTTTGCACTG 57.631 30.769 0.00 0.00 0.00 3.66
333 334 8.829612 CAACCAATAATCTTTTTCTTTTGCACT 58.170 29.630 0.00 0.00 0.00 4.40
334 335 7.587392 GCAACCAATAATCTTTTTCTTTTGCAC 59.413 33.333 0.00 0.00 35.62 4.57
335 336 7.498570 AGCAACCAATAATCTTTTTCTTTTGCA 59.501 29.630 0.00 0.00 37.50 4.08
336 337 7.799914 CAGCAACCAATAATCTTTTTCTTTTGC 59.200 33.333 0.00 0.00 35.74 3.68
337 338 9.044150 TCAGCAACCAATAATCTTTTTCTTTTG 57.956 29.630 0.00 0.00 0.00 2.44
338 339 9.783081 ATCAGCAACCAATAATCTTTTTCTTTT 57.217 25.926 0.00 0.00 0.00 2.27
339 340 9.428097 GATCAGCAACCAATAATCTTTTTCTTT 57.572 29.630 0.00 0.00 0.00 2.52
340 341 8.037166 GGATCAGCAACCAATAATCTTTTTCTT 58.963 33.333 0.00 0.00 0.00 2.52
341 342 7.364144 GGGATCAGCAACCAATAATCTTTTTCT 60.364 37.037 0.00 0.00 0.00 2.52
342 343 6.758416 GGGATCAGCAACCAATAATCTTTTTC 59.242 38.462 0.00 0.00 0.00 2.29
343 344 6.213195 TGGGATCAGCAACCAATAATCTTTTT 59.787 34.615 0.00 0.00 0.00 1.94
344 345 5.721000 TGGGATCAGCAACCAATAATCTTTT 59.279 36.000 0.00 0.00 0.00 2.27
345 346 5.127682 GTGGGATCAGCAACCAATAATCTTT 59.872 40.000 0.00 0.00 35.77 2.52
346 347 4.646492 GTGGGATCAGCAACCAATAATCTT 59.354 41.667 0.00 0.00 35.77 2.40
347 348 4.210331 GTGGGATCAGCAACCAATAATCT 58.790 43.478 0.00 0.00 35.77 2.40
348 349 3.003689 CGTGGGATCAGCAACCAATAATC 59.996 47.826 0.00 0.00 35.77 1.75
349 350 2.951642 CGTGGGATCAGCAACCAATAAT 59.048 45.455 0.00 0.00 35.77 1.28
350 351 2.364632 CGTGGGATCAGCAACCAATAA 58.635 47.619 0.00 0.00 35.77 1.40
351 352 1.408127 CCGTGGGATCAGCAACCAATA 60.408 52.381 0.00 0.00 35.77 1.90
352 353 0.680921 CCGTGGGATCAGCAACCAAT 60.681 55.000 0.00 0.00 35.77 3.16
353 354 1.303236 CCGTGGGATCAGCAACCAA 60.303 57.895 0.00 0.00 35.77 3.67
354 355 1.561769 ATCCGTGGGATCAGCAACCA 61.562 55.000 0.00 0.00 38.09 3.67
355 356 0.394352 AATCCGTGGGATCAGCAACC 60.394 55.000 0.00 0.00 42.27 3.77
356 357 2.325583 TAATCCGTGGGATCAGCAAC 57.674 50.000 0.00 0.00 42.27 4.17
357 358 3.576078 ATTAATCCGTGGGATCAGCAA 57.424 42.857 0.00 0.00 42.27 3.91
358 359 3.576078 AATTAATCCGTGGGATCAGCA 57.424 42.857 0.00 0.00 42.27 4.41
359 360 3.632145 ACAAATTAATCCGTGGGATCAGC 59.368 43.478 0.00 0.00 42.27 4.26
360 361 4.640201 ACACAAATTAATCCGTGGGATCAG 59.360 41.667 17.05 0.00 42.27 2.90
361 362 4.594970 ACACAAATTAATCCGTGGGATCA 58.405 39.130 17.05 0.00 42.27 2.92
362 363 4.260620 CGACACAAATTAATCCGTGGGATC 60.261 45.833 17.05 8.29 42.27 3.36
363 364 3.625764 CGACACAAATTAATCCGTGGGAT 59.374 43.478 17.05 0.00 45.46 3.85
364 365 3.004171 CGACACAAATTAATCCGTGGGA 58.996 45.455 17.05 0.00 35.55 4.37
365 366 2.745281 ACGACACAAATTAATCCGTGGG 59.255 45.455 17.05 12.28 33.62 4.61
366 367 5.498159 CATACGACACAAATTAATCCGTGG 58.502 41.667 17.05 6.90 33.62 4.94
367 368 4.961551 GCATACGACACAAATTAATCCGTG 59.038 41.667 13.10 13.10 35.48 4.94
368 369 4.034742 GGCATACGACACAAATTAATCCGT 59.965 41.667 0.00 0.00 0.00 4.69
369 370 4.523813 GGCATACGACACAAATTAATCCG 58.476 43.478 0.00 0.00 0.00 4.18
385 386 2.609916 GGAAGAAGAAGAAGCGGCATAC 59.390 50.000 1.45 0.00 0.00 2.39
386 387 2.236146 TGGAAGAAGAAGAAGCGGCATA 59.764 45.455 1.45 0.00 0.00 3.14
387 388 1.003580 TGGAAGAAGAAGAAGCGGCAT 59.996 47.619 1.45 0.00 0.00 4.40
388 389 0.396435 TGGAAGAAGAAGAAGCGGCA 59.604 50.000 1.45 0.00 0.00 5.69
389 390 1.399791 CATGGAAGAAGAAGAAGCGGC 59.600 52.381 0.00 0.00 0.00 6.53
404 405 8.634188 ATCTTCATAGAATATCCATCCATGGA 57.366 34.615 18.88 18.88 46.49 3.41
435 436 1.949525 CTCTTCACCAACACCACTTGG 59.050 52.381 0.00 0.00 45.62 3.61
473 479 4.091509 GCTGTTCACAGGTAATAACGACTG 59.908 45.833 9.01 0.00 43.94 3.51
491 497 1.087771 GCGTGGCGGTATTAGCTGTT 61.088 55.000 0.00 0.00 34.52 3.16
515 521 0.391927 CAGGGGTTTGCATTGCATGG 60.392 55.000 12.95 0.00 38.76 3.66
516 522 0.609151 TCAGGGGTTTGCATTGCATG 59.391 50.000 12.95 6.74 38.76 4.06
518 524 0.469705 AGTCAGGGGTTTGCATTGCA 60.470 50.000 7.38 7.38 36.47 4.08
519 525 0.037975 CAGTCAGGGGTTTGCATTGC 60.038 55.000 0.46 0.46 0.00 3.56
522 528 1.973281 CGCAGTCAGGGGTTTGCAT 60.973 57.895 0.00 0.00 36.37 3.96
523 529 2.594303 CGCAGTCAGGGGTTTGCA 60.594 61.111 0.00 0.00 36.37 4.08
524 530 2.281484 TCGCAGTCAGGGGTTTGC 60.281 61.111 0.00 0.00 0.00 3.68
525 531 1.966451 GGTCGCAGTCAGGGGTTTG 60.966 63.158 0.00 0.00 0.00 2.93
537 543 1.384989 TTTGGCTTTTTCCGGTCGCA 61.385 50.000 0.00 0.00 0.00 5.10
574 589 1.434555 CCGTTGGATGCACGAAACTA 58.565 50.000 9.93 0.00 40.20 2.24
641 668 2.429739 GTGGACGGACGGACGAAC 60.430 66.667 8.01 1.30 37.61 3.95
804 847 3.479269 GTTCGAGTTGAGCCGGCG 61.479 66.667 23.20 4.58 0.00 6.46
810 853 0.580104 AAAACCGCGTTCGAGTTGAG 59.420 50.000 4.92 0.00 38.10 3.02
811 854 1.522258 GTAAAACCGCGTTCGAGTTGA 59.478 47.619 4.92 0.00 38.10 3.18
812 855 1.523934 AGTAAAACCGCGTTCGAGTTG 59.476 47.619 4.92 0.00 38.10 3.16
813 856 1.856802 AGTAAAACCGCGTTCGAGTT 58.143 45.000 4.92 0.00 38.10 3.01
814 857 1.523934 CAAGTAAAACCGCGTTCGAGT 59.476 47.619 4.92 0.00 38.10 4.18
815 858 1.136446 CCAAGTAAAACCGCGTTCGAG 60.136 52.381 4.92 0.00 38.10 4.04
816 859 0.860533 CCAAGTAAAACCGCGTTCGA 59.139 50.000 4.92 0.00 38.10 3.71
817 860 0.723459 GCCAAGTAAAACCGCGTTCG 60.723 55.000 4.92 0.00 0.00 3.95
818 861 0.589708 AGCCAAGTAAAACCGCGTTC 59.410 50.000 4.92 0.00 0.00 3.95
842 885 1.134694 GCTGGCGTCTTTTAAGCGG 59.865 57.895 0.00 0.00 32.74 5.52
917 962 4.344865 GGGTGGGTGTGTGGCGAT 62.345 66.667 0.00 0.00 0.00 4.58
977 1023 3.052082 TCGTCCGTCTGTCCGTCC 61.052 66.667 0.00 0.00 0.00 4.79
978 1024 2.175322 GTCGTCCGTCTGTCCGTC 59.825 66.667 0.00 0.00 0.00 4.79
979 1025 3.720193 CGTCGTCCGTCTGTCCGT 61.720 66.667 0.00 0.00 0.00 4.69
980 1026 4.456253 CCGTCGTCCGTCTGTCCG 62.456 72.222 0.00 0.00 33.66 4.79
981 1027 4.112341 CCCGTCGTCCGTCTGTCC 62.112 72.222 0.00 0.00 33.66 4.02
982 1028 4.773117 GCCCGTCGTCCGTCTGTC 62.773 72.222 0.00 0.00 33.66 3.51
984 1030 4.129737 ATGCCCGTCGTCCGTCTG 62.130 66.667 0.00 0.00 33.66 3.51
985 1031 4.129737 CATGCCCGTCGTCCGTCT 62.130 66.667 0.00 0.00 33.66 4.18
1039 1085 1.827969 CTCCTTCTCCTCGTTGTGGAT 59.172 52.381 0.00 0.00 32.56 3.41
1040 1086 1.257743 CTCCTTCTCCTCGTTGTGGA 58.742 55.000 0.00 0.00 0.00 4.02
1045 1100 1.893919 GCCTGCTCCTTCTCCTCGTT 61.894 60.000 0.00 0.00 0.00 3.85
1057 1112 2.279120 CATCTCGTCCGCCTGCTC 60.279 66.667 0.00 0.00 0.00 4.26
1068 1123 1.361993 CCGGAGCTCCTTCATCTCG 59.638 63.158 29.73 13.83 0.00 4.04
1179 1252 2.041265 TTGGGGAGGAGGAGGAGC 59.959 66.667 0.00 0.00 0.00 4.70
1185 1258 3.732849 GGGCTGTTGGGGAGGAGG 61.733 72.222 0.00 0.00 0.00 4.30
1743 1834 3.104014 GTCGTTGGAGAAGTCGACC 57.896 57.895 13.01 0.00 44.18 4.79
1908 2002 1.335506 GCGTTCTCCTCCTCGATGATC 60.336 57.143 0.00 0.00 0.00 2.92
1973 2088 3.260483 CGAGCTGCTCCGTGATGC 61.260 66.667 22.97 0.00 0.00 3.91
1975 2090 4.862092 CGCGAGCTGCTCCGTGAT 62.862 66.667 22.97 0.00 43.27 3.06
2148 2263 4.719369 ACGTCCGAGCCGTTCAGC 62.719 66.667 0.00 0.00 34.28 4.26
2187 2302 2.045926 AGGAAGTGCGTCATGGCC 60.046 61.111 0.00 0.00 0.00 5.36
2223 2338 1.746615 CACCACCTGGATGAAGGCG 60.747 63.158 0.00 0.00 41.46 5.52
2493 2608 2.279517 GCCGCCCAGTGATCGTAG 60.280 66.667 0.00 0.00 0.00 3.51
2557 2672 7.972832 ACAAAGAAAAACGTATGGAGTATGA 57.027 32.000 0.00 0.00 0.00 2.15
2646 2770 1.273606 ACCAATCTCACTCACCTCGTG 59.726 52.381 0.00 0.00 34.45 4.35
2653 2777 4.622260 TGTCAATCACCAATCTCACTCA 57.378 40.909 0.00 0.00 0.00 3.41
2670 2794 7.552330 TCTTGCACATGCTAACTATAATTGTCA 59.448 33.333 5.31 0.00 42.66 3.58
2671 2795 7.919690 TCTTGCACATGCTAACTATAATTGTC 58.080 34.615 5.31 0.00 42.66 3.18
2672 2796 7.864108 TCTTGCACATGCTAACTATAATTGT 57.136 32.000 5.31 0.00 42.66 2.71
2673 2797 9.390795 GAATCTTGCACATGCTAACTATAATTG 57.609 33.333 5.31 0.00 42.66 2.32
2674 2798 9.347240 AGAATCTTGCACATGCTAACTATAATT 57.653 29.630 5.31 0.00 42.66 1.40
2675 2799 8.915057 AGAATCTTGCACATGCTAACTATAAT 57.085 30.769 5.31 0.00 42.66 1.28
2676 2800 8.615211 CAAGAATCTTGCACATGCTAACTATAA 58.385 33.333 10.30 0.00 42.66 0.98
2677 2801 7.770433 ACAAGAATCTTGCACATGCTAACTATA 59.230 33.333 21.69 0.00 42.66 1.31
2678 2802 6.600822 ACAAGAATCTTGCACATGCTAACTAT 59.399 34.615 21.69 0.00 42.66 2.12
2702 2826 4.065088 TCTGTTAGGCTTCACATGTGAAC 58.935 43.478 32.36 26.60 43.90 3.18
2771 2896 2.386660 GCAGCAGAGCGTCTTCCAC 61.387 63.158 0.00 0.00 0.00 4.02
2897 3022 0.821301 TCAATGAAACACCTGCGGCA 60.821 50.000 1.29 1.29 0.00 5.69
3021 3146 3.005791 CCAAAAGTTAGGACAAAGGCCAG 59.994 47.826 5.01 0.00 0.00 4.85
3035 3160 0.187606 GACCCCTCACCCCAAAAGTT 59.812 55.000 0.00 0.00 0.00 2.66
3155 3281 1.420430 GGGGACCGAGATACCATCAA 58.580 55.000 0.00 0.00 40.86 2.57
3440 3566 1.406887 CCCCGTCCAGAATGAAACGAT 60.407 52.381 0.00 0.00 44.23 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.