Multiple sequence alignment - TraesCS1D01G034400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G034400 chr1D 100.000 3613 0 0 1 3613 14720283 14716671 0.000000e+00 6673
1 TraesCS1D01G034400 chr1A 91.512 2698 158 28 544 3205 15324150 15326812 0.000000e+00 3648
2 TraesCS1D01G034400 chr1A 87.726 277 34 0 267 543 15323715 15323991 1.250000e-84 324
3 TraesCS1D01G034400 chr1A 89.610 231 24 0 35 265 15322853 15323083 9.810000e-76 294
4 TraesCS1D01G034400 chr3A 88.604 1483 167 2 1101 2582 531629705 531631186 0.000000e+00 1801
5 TraesCS1D01G034400 chr3D 88.537 1483 168 2 1101 2582 419588671 419587190 0.000000e+00 1796
6 TraesCS1D01G034400 chr3B 87.879 1485 174 6 1101 2582 545806129 545807610 0.000000e+00 1740
7 TraesCS1D01G034400 chr3B 84.379 781 116 5 1702 2476 800597704 800598484 0.000000e+00 761
8 TraesCS1D01G034400 chrUn 86.654 1551 192 11 1043 2579 289483349 289484898 0.000000e+00 1703
9 TraesCS1D01G034400 chrUn 86.654 1551 192 11 1043 2579 296679596 296681145 0.000000e+00 1703
10 TraesCS1D01G034400 chr4D 86.469 1552 190 18 1043 2579 506852929 506854475 0.000000e+00 1685
11 TraesCS1D01G034400 chr5A 85.744 1431 179 8 1046 2476 702957764 702959169 0.000000e+00 1489
12 TraesCS1D01G034400 chr4B 86.357 1312 168 8 1262 2565 664357594 664356286 0.000000e+00 1421


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G034400 chr1D 14716671 14720283 3612 True 6673 6673 100.000 1 3613 1 chr1D.!!$R1 3612
1 TraesCS1D01G034400 chr1A 15322853 15326812 3959 False 1422 3648 89.616 35 3205 3 chr1A.!!$F1 3170
2 TraesCS1D01G034400 chr3A 531629705 531631186 1481 False 1801 1801 88.604 1101 2582 1 chr3A.!!$F1 1481
3 TraesCS1D01G034400 chr3D 419587190 419588671 1481 True 1796 1796 88.537 1101 2582 1 chr3D.!!$R1 1481
4 TraesCS1D01G034400 chr3B 545806129 545807610 1481 False 1740 1740 87.879 1101 2582 1 chr3B.!!$F1 1481
5 TraesCS1D01G034400 chr3B 800597704 800598484 780 False 761 761 84.379 1702 2476 1 chr3B.!!$F2 774
6 TraesCS1D01G034400 chrUn 289483349 289484898 1549 False 1703 1703 86.654 1043 2579 1 chrUn.!!$F1 1536
7 TraesCS1D01G034400 chrUn 296679596 296681145 1549 False 1703 1703 86.654 1043 2579 1 chrUn.!!$F2 1536
8 TraesCS1D01G034400 chr4D 506852929 506854475 1546 False 1685 1685 86.469 1043 2579 1 chr4D.!!$F1 1536
9 TraesCS1D01G034400 chr5A 702957764 702959169 1405 False 1489 1489 85.744 1046 2476 1 chr5A.!!$F1 1430
10 TraesCS1D01G034400 chr4B 664356286 664357594 1308 True 1421 1421 86.357 1262 2565 1 chr4B.!!$R1 1303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 1014 0.036732 GTCCTCATTGGCTGGTCACA 59.963 55.0 0.00 0.0 35.26 3.58 F
911 1708 0.039035 AAATAGAAACCGGGGCTGCA 59.961 50.0 6.32 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2286 3086 1.760613 ACAACCTCAAACCTCTCGTCA 59.239 47.619 0.00 0.0 0.00 4.35 R
2635 3445 1.477923 GGTGGCCCGCCTAATTATTGA 60.478 52.381 5.94 0.0 36.94 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.662290 CAGGGGGACGGATTTGAAA 57.338 52.632 0.00 0.00 0.00 2.69
19 20 1.917872 CAGGGGGACGGATTTGAAAA 58.082 50.000 0.00 0.00 0.00 2.29
20 21 1.818674 CAGGGGGACGGATTTGAAAAG 59.181 52.381 0.00 0.00 0.00 2.27
21 22 1.427753 AGGGGGACGGATTTGAAAAGT 59.572 47.619 0.00 0.00 0.00 2.66
22 23 1.816835 GGGGGACGGATTTGAAAAGTC 59.183 52.381 3.91 3.91 0.00 3.01
28 29 2.636768 GGATTTGAAAAGTCCGGCTG 57.363 50.000 0.00 0.00 43.07 4.85
29 30 1.886542 GGATTTGAAAAGTCCGGCTGT 59.113 47.619 0.00 0.00 43.07 4.40
30 31 3.078837 GGATTTGAAAAGTCCGGCTGTA 58.921 45.455 0.00 0.00 43.07 2.74
31 32 3.127030 GGATTTGAAAAGTCCGGCTGTAG 59.873 47.826 0.00 0.00 43.07 2.74
32 33 3.478857 TTTGAAAAGTCCGGCTGTAGA 57.521 42.857 0.00 0.00 0.00 2.59
33 34 2.743636 TGAAAAGTCCGGCTGTAGAG 57.256 50.000 0.00 0.00 0.00 2.43
52 53 0.613777 GGGTTGGATCTGTTCTCCGT 59.386 55.000 0.00 0.00 35.41 4.69
60 61 0.039180 TCTGTTCTCCGTGCCTCCTA 59.961 55.000 0.00 0.00 0.00 2.94
63 64 0.456628 GTTCTCCGTGCCTCCTAGTC 59.543 60.000 0.00 0.00 0.00 2.59
64 65 0.683504 TTCTCCGTGCCTCCTAGTCC 60.684 60.000 0.00 0.00 0.00 3.85
65 66 1.379977 CTCCGTGCCTCCTAGTCCA 60.380 63.158 0.00 0.00 0.00 4.02
80 81 3.197790 CCATGGCTGCGAAGGTCG 61.198 66.667 0.00 0.00 43.89 4.79
86 87 3.414700 CTGCGAAGGTCGTGCCAC 61.415 66.667 0.00 0.00 42.81 5.01
95 96 2.571757 TCGTGCCACGAGACCATC 59.428 61.111 17.22 0.00 46.73 3.51
118 119 2.631160 TCGACCTGTTGGATGTGTTT 57.369 45.000 0.00 0.00 37.04 2.83
121 122 2.032030 CGACCTGTTGGATGTGTTTGAC 60.032 50.000 0.00 0.00 37.04 3.18
124 125 0.306228 TGTTGGATGTGTTTGACGCG 59.694 50.000 3.53 3.53 0.00 6.01
133 134 2.030628 TGTGTTTGACGCGTCAGATCTA 60.031 45.455 37.06 22.72 41.13 1.98
145 146 3.181486 CGTCAGATCTAAAGCTAGTGCCA 60.181 47.826 0.00 0.00 40.80 4.92
176 177 2.889617 CGGGTACTGCCGATGACA 59.110 61.111 4.71 0.00 38.44 3.58
251 252 2.749076 GCACTAGCATTGTTGGTCATCA 59.251 45.455 0.00 0.00 41.58 3.07
256 257 3.290710 AGCATTGTTGGTCATCATACCC 58.709 45.455 0.00 0.00 38.90 3.69
257 258 3.023119 GCATTGTTGGTCATCATACCCA 58.977 45.455 0.00 0.00 38.90 4.51
265 266 1.153188 CATCATACCCAGTGCGCCA 60.153 57.895 4.18 0.00 0.00 5.69
288 919 4.103311 AGCTGAAAACTCTTGTCCTAACCT 59.897 41.667 0.00 0.00 0.00 3.50
294 925 8.311836 TGAAAACTCTTGTCCTAACCTATACTG 58.688 37.037 0.00 0.00 0.00 2.74
298 929 2.313317 TGTCCTAACCTATACTGGCCG 58.687 52.381 0.00 0.00 0.00 6.13
332 963 3.472652 ACAAACTTGCGTCATGACCTTA 58.527 40.909 20.03 3.85 0.00 2.69
340 971 2.671396 GCGTCATGACCTTATTGAACGT 59.329 45.455 20.03 0.00 0.00 3.99
347 978 4.699637 TGACCTTATTGAACGTGTTGTCT 58.300 39.130 0.00 0.00 0.00 3.41
350 981 4.992951 ACCTTATTGAACGTGTTGTCTACC 59.007 41.667 0.00 0.00 0.00 3.18
376 1007 0.478072 TGTGTTGGTCCTCATTGGCT 59.522 50.000 0.00 0.00 35.26 4.75
382 1013 0.678048 GGTCCTCATTGGCTGGTCAC 60.678 60.000 0.00 0.00 35.26 3.67
383 1014 0.036732 GTCCTCATTGGCTGGTCACA 59.963 55.000 0.00 0.00 35.26 3.58
389 1020 1.812571 CATTGGCTGGTCACAGTAACC 59.187 52.381 0.00 0.00 46.62 2.85
391 1022 0.840617 TGGCTGGTCACAGTAACCAA 59.159 50.000 0.00 0.00 45.86 3.67
394 1025 2.290323 GGCTGGTCACAGTAACCAAGAT 60.290 50.000 0.00 0.00 45.86 2.40
409 1040 3.758554 ACCAAGATGAAAATCCTTGTCCG 59.241 43.478 0.00 0.00 36.47 4.79
413 1044 4.508662 AGATGAAAATCCTTGTCCGAGTC 58.491 43.478 0.00 0.00 0.00 3.36
419 1050 1.475403 TCCTTGTCCGAGTCATCTCC 58.525 55.000 0.00 0.00 37.40 3.71
420 1051 1.006043 TCCTTGTCCGAGTCATCTCCT 59.994 52.381 0.00 0.00 37.40 3.69
422 1053 0.532573 TTGTCCGAGTCATCTCCTGC 59.467 55.000 0.00 0.00 37.40 4.85
457 1088 3.736252 CGATGTCGTGAGGATGTTTATCC 59.264 47.826 0.00 0.00 42.72 2.59
474 1105 1.271856 TCCCTCATGAAGGCGTTGTA 58.728 50.000 5.38 0.00 44.71 2.41
477 1108 0.647410 CTCATGAAGGCGTTGTAGCG 59.353 55.000 0.00 0.00 38.18 4.26
481 1112 1.153429 GAAGGCGTTGTAGCGGGAT 60.153 57.895 0.00 0.00 38.18 3.85
491 1122 1.754803 TGTAGCGGGATGAAGTCGATT 59.245 47.619 0.00 0.00 0.00 3.34
496 1127 2.795470 GCGGGATGAAGTCGATTTAGTC 59.205 50.000 0.00 0.00 0.00 2.59
500 1131 5.859114 CGGGATGAAGTCGATTTAGTCATAG 59.141 44.000 0.00 0.00 0.00 2.23
543 1174 0.687920 TGGTTCGGTCATAACTGCCA 59.312 50.000 0.00 0.00 0.00 4.92
544 1175 1.072489 TGGTTCGGTCATAACTGCCAA 59.928 47.619 0.00 0.00 0.00 4.52
545 1176 2.156098 GGTTCGGTCATAACTGCCAAA 58.844 47.619 0.00 0.00 0.00 3.28
546 1177 2.752903 GGTTCGGTCATAACTGCCAAAT 59.247 45.455 0.00 0.00 0.00 2.32
548 1179 4.396790 GGTTCGGTCATAACTGCCAAATTA 59.603 41.667 0.00 0.00 0.00 1.40
549 1180 5.067283 GGTTCGGTCATAACTGCCAAATTAT 59.933 40.000 0.00 0.00 0.00 1.28
550 1181 5.749596 TCGGTCATAACTGCCAAATTATG 57.250 39.130 3.14 3.14 39.25 1.90
551 1182 5.432645 TCGGTCATAACTGCCAAATTATGA 58.567 37.500 6.87 6.87 42.67 2.15
552 1183 6.061441 TCGGTCATAACTGCCAAATTATGAT 58.939 36.000 11.98 0.00 45.09 2.45
553 1184 6.017192 TCGGTCATAACTGCCAAATTATGATG 60.017 38.462 11.98 9.21 45.09 3.07
554 1185 6.449698 GGTCATAACTGCCAAATTATGATGG 58.550 40.000 11.98 0.00 45.09 3.51
702 1495 9.485206 GAACGGCTTTATACTCCATCTATTTTA 57.515 33.333 0.00 0.00 0.00 1.52
711 1504 3.578716 CTCCATCTATTTTAGGGCGGAGA 59.421 47.826 0.00 0.00 37.73 3.71
749 1543 0.522626 TGTGCACAATTGATGCCGAG 59.477 50.000 19.28 3.72 42.69 4.63
752 1546 1.315257 GCACAATTGATGCCGAGGGT 61.315 55.000 13.59 0.00 37.08 4.34
757 1551 4.023291 ACAATTGATGCCGAGGGTTTTAT 58.977 39.130 13.59 0.00 0.00 1.40
760 1554 1.226746 GATGCCGAGGGTTTTATCCG 58.773 55.000 0.00 0.00 0.00 4.18
795 1589 7.656707 AAAATTCTAAAAGCATGCGTGAAAT 57.343 28.000 13.01 6.19 0.00 2.17
796 1590 6.636666 AATTCTAAAAGCATGCGTGAAATG 57.363 33.333 13.01 1.09 0.00 2.32
797 1591 4.764679 TCTAAAAGCATGCGTGAAATGT 57.235 36.364 13.01 0.00 0.00 2.71
798 1592 4.475028 TCTAAAAGCATGCGTGAAATGTG 58.525 39.130 13.01 0.00 0.00 3.21
799 1593 3.367992 AAAAGCATGCGTGAAATGTGA 57.632 38.095 13.01 0.00 0.00 3.58
800 1594 3.367992 AAAGCATGCGTGAAATGTGAA 57.632 38.095 13.01 0.00 0.00 3.18
801 1595 2.336554 AGCATGCGTGAAATGTGAAC 57.663 45.000 13.01 0.00 0.00 3.18
857 1652 4.015084 ACCGTGTTCATAGTACTAGCACT 58.985 43.478 8.85 0.31 0.00 4.40
858 1653 4.142447 ACCGTGTTCATAGTACTAGCACTG 60.142 45.833 8.85 12.10 0.00 3.66
861 1656 6.090783 CGTGTTCATAGTACTAGCACTGAAA 58.909 40.000 15.06 6.53 0.00 2.69
887 1684 2.436646 CCCGGCGCATCTCAGTTT 60.437 61.111 10.83 0.00 0.00 2.66
896 1693 5.633601 CGGCGCATCTCAGTTTCTATAAATA 59.366 40.000 10.83 0.00 0.00 1.40
911 1708 0.039035 AAATAGAAACCGGGGCTGCA 59.961 50.000 6.32 0.00 0.00 4.41
913 1710 2.869503 ATAGAAACCGGGGCTGCACG 62.870 60.000 6.32 5.43 0.00 5.34
1011 1808 0.552848 CTTCACATATGGCCCCACCT 59.447 55.000 7.80 0.00 40.22 4.00
1099 1899 1.453155 GCCGGAGAAGAAGATGCAAA 58.547 50.000 5.05 0.00 0.00 3.68
1314 2114 2.796193 CCGCGACATCATCCTCCCA 61.796 63.158 8.23 0.00 0.00 4.37
1470 2270 0.179116 CTGAGCTCGAGATGGTGGTG 60.179 60.000 18.75 0.00 0.00 4.17
1584 2384 0.673956 TACTCTGCACTCTCGTCGCT 60.674 55.000 0.00 0.00 0.00 4.93
1699 2499 3.813143 CACGCATTGCCGGCATCA 61.813 61.111 33.25 18.18 0.00 3.07
2286 3086 1.561643 TCGAGGAAATGGTGAGAGCT 58.438 50.000 0.00 0.00 0.00 4.09
2403 3209 2.581354 CTCAACCGAGGCCTCCTG 59.419 66.667 27.20 20.29 35.44 3.86
2605 3415 5.100943 CCTCTAAGTAACCTACGAACTTGC 58.899 45.833 0.00 0.00 35.23 4.01
2606 3416 5.336213 CCTCTAAGTAACCTACGAACTTGCA 60.336 44.000 0.00 0.00 35.23 4.08
2619 3429 4.576463 ACGAACTTGCAGAAGATGAACTTT 59.424 37.500 0.00 0.00 39.13 2.66
2621 3431 4.843220 ACTTGCAGAAGATGAACTTTGG 57.157 40.909 0.00 0.00 39.13 3.28
2655 3465 0.958822 CAATAATTAGGCGGGCCACC 59.041 55.000 12.97 1.13 38.92 4.61
2698 3508 1.301244 CGCGAATAGAGCTGCCCAT 60.301 57.895 0.00 0.00 0.00 4.00
2699 3509 1.563435 CGCGAATAGAGCTGCCCATG 61.563 60.000 0.00 0.00 0.00 3.66
2700 3510 0.533755 GCGAATAGAGCTGCCCATGT 60.534 55.000 0.00 0.00 0.00 3.21
2701 3511 1.270305 GCGAATAGAGCTGCCCATGTA 60.270 52.381 0.00 0.00 0.00 2.29
2702 3512 2.613977 GCGAATAGAGCTGCCCATGTAT 60.614 50.000 0.00 0.00 0.00 2.29
2703 3513 3.257393 CGAATAGAGCTGCCCATGTATC 58.743 50.000 0.00 0.00 0.00 2.24
2704 3514 3.056250 CGAATAGAGCTGCCCATGTATCT 60.056 47.826 0.00 0.00 0.00 1.98
2705 3515 4.502962 GAATAGAGCTGCCCATGTATCTC 58.497 47.826 0.00 0.00 0.00 2.75
2706 3516 0.678395 AGAGCTGCCCATGTATCTCG 59.322 55.000 0.00 0.00 0.00 4.04
2757 3568 9.737025 GTTACGTCTGTATTTGAAACTATTGTC 57.263 33.333 0.00 0.00 0.00 3.18
2849 3660 9.616634 TTCGACGGTTATATACATAAAGTGATC 57.383 33.333 0.00 0.00 0.00 2.92
2881 3692 7.394016 TGTTTGTATACTGATCATGTGTTCCT 58.606 34.615 4.17 0.00 0.00 3.36
2895 3706 5.083533 TGTGTTCCTGCTTCATTGTTTTT 57.916 34.783 0.00 0.00 0.00 1.94
2896 3707 4.869297 TGTGTTCCTGCTTCATTGTTTTTG 59.131 37.500 0.00 0.00 0.00 2.44
2904 3715 7.768120 TCCTGCTTCATTGTTTTTGTTGTATTT 59.232 29.630 0.00 0.00 0.00 1.40
2905 3716 8.063630 CCTGCTTCATTGTTTTTGTTGTATTTC 58.936 33.333 0.00 0.00 0.00 2.17
2906 3717 7.914465 TGCTTCATTGTTTTTGTTGTATTTCC 58.086 30.769 0.00 0.00 0.00 3.13
2915 3745 7.858382 TGTTTTTGTTGTATTTCCACTACATCG 59.142 33.333 0.00 0.00 34.83 3.84
2920 3750 6.311935 TGTTGTATTTCCACTACATCGCTTAC 59.688 38.462 0.00 0.00 30.82 2.34
2921 3751 5.968254 TGTATTTCCACTACATCGCTTACA 58.032 37.500 0.00 0.00 0.00 2.41
2928 3758 5.465390 TCCACTACATCGCTTACATTATTGC 59.535 40.000 0.00 0.00 0.00 3.56
2933 3763 3.519908 TCGCTTACATTATTGCATCGC 57.480 42.857 0.00 0.00 0.00 4.58
2936 3766 3.218398 GCTTACATTATTGCATCGCGTC 58.782 45.455 5.77 0.00 0.00 5.19
2947 3777 1.466360 GCATCGCGTCTTTCTGCAAAT 60.466 47.619 5.77 0.00 33.13 2.32
2948 3778 2.223021 GCATCGCGTCTTTCTGCAAATA 60.223 45.455 5.77 0.00 33.13 1.40
2955 3785 5.965334 CGCGTCTTTCTGCAAATAATGTATT 59.035 36.000 0.00 0.00 0.00 1.89
3002 3838 8.367156 ACAAACATTGTATTGGCAAACTCTTAT 58.633 29.630 3.01 0.00 43.27 1.73
3010 3846 4.981806 TGGCAAACTCTTATACATTGGC 57.018 40.909 0.00 0.00 44.14 4.52
3039 3875 3.819564 ACTGCAGATCGGTGCTATTAA 57.180 42.857 23.35 0.00 44.32 1.40
3054 3890 5.740290 GCTATTAAGCCCTACCTATCACA 57.260 43.478 0.00 0.00 43.40 3.58
3055 3891 5.480205 GCTATTAAGCCCTACCTATCACAC 58.520 45.833 0.00 0.00 43.40 3.82
3056 3892 5.011738 GCTATTAAGCCCTACCTATCACACA 59.988 44.000 0.00 0.00 43.40 3.72
3057 3893 4.748277 TTAAGCCCTACCTATCACACAC 57.252 45.455 0.00 0.00 0.00 3.82
3058 3894 2.247699 AGCCCTACCTATCACACACA 57.752 50.000 0.00 0.00 0.00 3.72
3064 3900 5.470368 CCCTACCTATCACACACAATATCG 58.530 45.833 0.00 0.00 0.00 2.92
3076 3912 7.043656 TCACACACAATATCGTCGAATTATGTC 60.044 37.037 0.00 0.00 0.00 3.06
3080 3916 6.308041 CACAATATCGTCGAATTATGTCCGAT 59.692 38.462 0.00 8.13 38.45 4.18
3086 3922 4.146616 CGTCGAATTATGTCCGATGAAGTC 59.853 45.833 0.00 0.00 40.57 3.01
3101 3937 4.048241 TGAAGTCATCACACACGTTACA 57.952 40.909 0.00 0.00 31.50 2.41
3106 3942 5.806286 AGTCATCACACACGTTACAAAAAG 58.194 37.500 0.00 0.00 0.00 2.27
3107 3943 4.967575 GTCATCACACACGTTACAAAAAGG 59.032 41.667 0.00 0.00 0.00 3.11
3131 3967 4.734398 ATTGTGTGCCTCAAAGTGAAAA 57.266 36.364 0.00 0.00 0.00 2.29
3132 3968 3.502191 TGTGTGCCTCAAAGTGAAAAC 57.498 42.857 0.00 0.00 0.00 2.43
3133 3969 2.165437 TGTGTGCCTCAAAGTGAAAACC 59.835 45.455 0.00 0.00 0.00 3.27
3144 3980 6.068010 TCAAAGTGAAAACCTATGTGATGGT 58.932 36.000 0.00 0.00 38.35 3.55
3158 3994 1.282738 TGATGGTCACCACATCATGCT 59.717 47.619 0.00 0.00 46.99 3.79
3177 4013 2.899900 GCTTGATTGGGGAAGGAAAACT 59.100 45.455 0.00 0.00 0.00 2.66
3179 4015 4.202357 GCTTGATTGGGGAAGGAAAACTTT 60.202 41.667 0.00 0.00 40.21 2.66
3183 4019 3.108847 TGGGGAAGGAAAACTTTGTGT 57.891 42.857 0.00 0.00 40.21 3.72
3188 4024 5.289595 GGGAAGGAAAACTTTGTGTGATTC 58.710 41.667 0.00 0.00 40.21 2.52
3189 4025 5.069119 GGGAAGGAAAACTTTGTGTGATTCT 59.931 40.000 0.00 0.00 40.21 2.40
3190 4026 6.264518 GGGAAGGAAAACTTTGTGTGATTCTA 59.735 38.462 0.00 0.00 40.21 2.10
3205 4041 6.484643 GTGTGATTCTATGCACATGGTTCTAT 59.515 38.462 0.00 0.00 45.59 1.98
3206 4042 6.707608 TGTGATTCTATGCACATGGTTCTATC 59.292 38.462 0.00 0.00 39.86 2.08
3207 4043 6.707608 GTGATTCTATGCACATGGTTCTATCA 59.292 38.462 0.00 0.00 35.19 2.15
3208 4044 7.227314 GTGATTCTATGCACATGGTTCTATCAA 59.773 37.037 0.00 0.00 35.19 2.57
3209 4045 6.925610 TTCTATGCACATGGTTCTATCAAC 57.074 37.500 0.00 0.00 0.00 3.18
3210 4046 5.988287 TCTATGCACATGGTTCTATCAACA 58.012 37.500 0.00 0.00 0.00 3.33
3211 4047 6.051074 TCTATGCACATGGTTCTATCAACAG 58.949 40.000 0.00 0.00 0.00 3.16
3212 4048 4.019792 TGCACATGGTTCTATCAACAGT 57.980 40.909 0.00 0.00 0.00 3.55
3213 4049 5.159273 TGCACATGGTTCTATCAACAGTA 57.841 39.130 0.00 0.00 0.00 2.74
3214 4050 5.555966 TGCACATGGTTCTATCAACAGTAA 58.444 37.500 0.00 0.00 0.00 2.24
3215 4051 6.000840 TGCACATGGTTCTATCAACAGTAAA 58.999 36.000 0.00 0.00 0.00 2.01
3216 4052 6.658816 TGCACATGGTTCTATCAACAGTAAAT 59.341 34.615 0.00 0.00 0.00 1.40
3217 4053 6.968904 GCACATGGTTCTATCAACAGTAAATG 59.031 38.462 0.00 0.00 0.00 2.32
3218 4054 7.148255 GCACATGGTTCTATCAACAGTAAATGA 60.148 37.037 0.00 0.00 0.00 2.57
3219 4055 8.896744 CACATGGTTCTATCAACAGTAAATGAT 58.103 33.333 0.00 0.00 39.50 2.45
3243 4079 2.485266 GAACAAAGGTTCGTGGGTTG 57.515 50.000 0.00 0.00 43.54 3.77
3244 4080 1.746787 GAACAAAGGTTCGTGGGTTGT 59.253 47.619 0.00 0.00 43.54 3.32
3245 4081 1.842052 ACAAAGGTTCGTGGGTTGTT 58.158 45.000 0.00 0.00 0.00 2.83
3246 4082 3.002038 ACAAAGGTTCGTGGGTTGTTA 57.998 42.857 0.00 0.00 0.00 2.41
3247 4083 3.354467 ACAAAGGTTCGTGGGTTGTTAA 58.646 40.909 0.00 0.00 0.00 2.01
3248 4084 3.955551 ACAAAGGTTCGTGGGTTGTTAAT 59.044 39.130 0.00 0.00 0.00 1.40
3249 4085 4.403113 ACAAAGGTTCGTGGGTTGTTAATT 59.597 37.500 0.00 0.00 0.00 1.40
3250 4086 5.593502 ACAAAGGTTCGTGGGTTGTTAATTA 59.406 36.000 0.00 0.00 0.00 1.40
3251 4087 5.694231 AAGGTTCGTGGGTTGTTAATTAC 57.306 39.130 0.00 0.00 0.00 1.89
3252 4088 4.716794 AGGTTCGTGGGTTGTTAATTACA 58.283 39.130 0.00 0.00 34.12 2.41
3253 4089 5.131784 AGGTTCGTGGGTTGTTAATTACAA 58.868 37.500 0.00 0.00 44.31 2.41
3254 4090 5.239963 AGGTTCGTGGGTTGTTAATTACAAG 59.760 40.000 0.00 0.00 46.95 3.16
3286 4122 9.811995 TTTAAAACATACATAGAGACTATGCGT 57.188 29.630 15.74 9.65 0.00 5.24
3289 4125 9.811995 AAAACATACATAGAGACTATGCGTAAA 57.188 29.630 15.74 1.67 0.00 2.01
3290 4126 9.811995 AAACATACATAGAGACTATGCGTAAAA 57.188 29.630 15.74 0.32 0.00 1.52
3291 4127 8.798748 ACATACATAGAGACTATGCGTAAAAC 57.201 34.615 15.74 0.00 0.00 2.43
3292 4128 8.410912 ACATACATAGAGACTATGCGTAAAACA 58.589 33.333 15.74 0.00 0.00 2.83
3293 4129 9.244799 CATACATAGAGACTATGCGTAAAACAA 57.755 33.333 15.74 0.00 0.00 2.83
3294 4130 9.982651 ATACATAGAGACTATGCGTAAAACAAT 57.017 29.630 15.74 0.00 0.00 2.71
3295 4131 8.718102 ACATAGAGACTATGCGTAAAACAATT 57.282 30.769 15.74 0.00 0.00 2.32
3296 4132 9.811995 ACATAGAGACTATGCGTAAAACAATTA 57.188 29.630 15.74 0.00 0.00 1.40
3300 4136 9.988350 AGAGACTATGCGTAAAACAATTAAATG 57.012 29.630 0.00 0.00 0.00 2.32
3301 4137 9.982291 GAGACTATGCGTAAAACAATTAAATGA 57.018 29.630 0.00 0.00 0.00 2.57
3307 4143 9.800433 ATGCGTAAAACAATTAAATGATCATCA 57.200 25.926 9.06 0.00 0.00 3.07
3308 4144 9.800433 TGCGTAAAACAATTAAATGATCATCAT 57.200 25.926 9.06 3.94 39.09 2.45
3327 4163 9.842775 ATCATCATGTAGTTCTTATTGTCATGT 57.157 29.630 0.00 0.00 34.67 3.21
3328 4164 9.671279 TCATCATGTAGTTCTTATTGTCATGTT 57.329 29.630 0.00 0.00 34.67 2.71
3331 4167 8.236586 TCATGTAGTTCTTATTGTCATGTTTGC 58.763 33.333 0.00 0.00 34.67 3.68
3332 4168 7.503521 TGTAGTTCTTATTGTCATGTTTGCA 57.496 32.000 0.00 0.00 0.00 4.08
3333 4169 7.935520 TGTAGTTCTTATTGTCATGTTTGCAA 58.064 30.769 0.00 0.00 0.00 4.08
3334 4170 8.075574 TGTAGTTCTTATTGTCATGTTTGCAAG 58.924 33.333 0.00 0.00 0.00 4.01
3335 4171 5.922544 AGTTCTTATTGTCATGTTTGCAAGC 59.077 36.000 6.31 6.31 0.00 4.01
3336 4172 4.475028 TCTTATTGTCATGTTTGCAAGCG 58.525 39.130 8.84 0.00 0.00 4.68
3337 4173 2.798976 ATTGTCATGTTTGCAAGCGT 57.201 40.000 8.84 5.42 0.00 5.07
3338 4174 2.575694 TTGTCATGTTTGCAAGCGTT 57.424 40.000 5.13 0.00 0.00 4.84
3339 4175 1.837648 TGTCATGTTTGCAAGCGTTG 58.162 45.000 5.13 7.41 0.00 4.10
3340 4176 1.133982 TGTCATGTTTGCAAGCGTTGT 59.866 42.857 5.13 0.00 0.00 3.32
3341 4177 1.518102 GTCATGTTTGCAAGCGTTGTG 59.482 47.619 5.13 3.74 0.00 3.33
3342 4178 0.854062 CATGTTTGCAAGCGTTGTGG 59.146 50.000 5.13 0.00 0.00 4.17
3343 4179 0.875474 ATGTTTGCAAGCGTTGTGGC 60.875 50.000 8.84 0.00 0.00 5.01
3344 4180 2.278466 TTTGCAAGCGTTGTGGCG 60.278 55.556 0.00 0.00 38.18 5.69
3345 4181 3.057547 TTTGCAAGCGTTGTGGCGT 62.058 52.632 0.00 0.00 38.18 5.68
3346 4182 3.748071 TTGCAAGCGTTGTGGCGTG 62.748 57.895 0.00 0.00 43.83 5.34
3347 4183 3.947841 GCAAGCGTTGTGGCGTGA 61.948 61.111 4.72 0.00 43.73 4.35
3348 4184 2.945984 CAAGCGTTGTGGCGTGAT 59.054 55.556 0.00 0.00 43.73 3.06
3349 4185 1.154413 CAAGCGTTGTGGCGTGATC 60.154 57.895 0.00 0.00 43.73 2.92
3350 4186 2.325082 AAGCGTTGTGGCGTGATCC 61.325 57.895 0.00 0.00 38.18 3.36
3351 4187 4.147322 GCGTTGTGGCGTGATCCG 62.147 66.667 0.00 0.00 40.40 4.18
3352 4188 2.431771 CGTTGTGGCGTGATCCGA 60.432 61.111 7.64 0.00 39.56 4.55
3353 4189 2.024868 CGTTGTGGCGTGATCCGAA 61.025 57.895 7.64 0.00 39.56 4.30
3354 4190 1.787847 GTTGTGGCGTGATCCGAAG 59.212 57.895 7.64 0.00 39.56 3.79
3366 4202 3.393360 CCGAAGGCCTCCTCTGTT 58.607 61.111 5.23 0.00 46.14 3.16
3367 4203 1.679898 CCGAAGGCCTCCTCTGTTT 59.320 57.895 5.23 0.00 46.14 2.83
3368 4204 0.036875 CCGAAGGCCTCCTCTGTTTT 59.963 55.000 5.23 0.00 46.14 2.43
3369 4205 1.545651 CCGAAGGCCTCCTCTGTTTTT 60.546 52.381 5.23 0.00 46.14 1.94
3370 4206 2.290071 CCGAAGGCCTCCTCTGTTTTTA 60.290 50.000 5.23 0.00 46.14 1.52
3371 4207 2.742589 CGAAGGCCTCCTCTGTTTTTAC 59.257 50.000 5.23 0.00 30.89 2.01
3372 4208 3.751518 GAAGGCCTCCTCTGTTTTTACA 58.248 45.455 5.23 0.00 30.89 2.41
3373 4209 3.425162 AGGCCTCCTCTGTTTTTACAG 57.575 47.619 0.00 0.00 39.00 2.74
3374 4210 2.979678 AGGCCTCCTCTGTTTTTACAGA 59.020 45.455 0.00 7.67 43.68 3.41
3375 4211 3.394606 AGGCCTCCTCTGTTTTTACAGAA 59.605 43.478 0.00 0.00 44.98 3.02
3376 4212 4.141251 AGGCCTCCTCTGTTTTTACAGAAA 60.141 41.667 0.00 1.03 44.98 2.52
3377 4213 4.216472 GGCCTCCTCTGTTTTTACAGAAAG 59.784 45.833 9.08 9.03 44.98 2.62
3378 4214 4.216472 GCCTCCTCTGTTTTTACAGAAAGG 59.784 45.833 21.03 21.03 44.98 3.11
3379 4215 5.621193 CCTCCTCTGTTTTTACAGAAAGGA 58.379 41.667 20.88 17.01 44.39 3.36
3380 4216 5.470437 CCTCCTCTGTTTTTACAGAAAGGAC 59.530 44.000 20.88 1.68 44.39 3.85
3381 4217 5.996644 TCCTCTGTTTTTACAGAAAGGACA 58.003 37.500 9.08 0.00 44.98 4.02
3382 4218 5.820947 TCCTCTGTTTTTACAGAAAGGACAC 59.179 40.000 9.08 0.00 44.98 3.67
3383 4219 5.588648 CCTCTGTTTTTACAGAAAGGACACA 59.411 40.000 9.08 0.00 44.98 3.72
3384 4220 6.431198 TCTGTTTTTACAGAAAGGACACAC 57.569 37.500 5.57 0.00 43.03 3.82
3385 4221 5.064198 TCTGTTTTTACAGAAAGGACACACG 59.936 40.000 5.57 0.00 43.03 4.49
3386 4222 4.696402 TGTTTTTACAGAAAGGACACACGT 59.304 37.500 0.00 0.00 0.00 4.49
3387 4223 5.163834 TGTTTTTACAGAAAGGACACACGTC 60.164 40.000 0.00 0.00 41.80 4.34
3396 4232 3.886044 GACACACGTCCTCATGTCA 57.114 52.632 7.97 0.00 40.95 3.58
3397 4233 2.148916 GACACACGTCCTCATGTCAA 57.851 50.000 7.97 0.00 40.95 3.18
3398 4234 2.688507 GACACACGTCCTCATGTCAAT 58.311 47.619 7.97 0.00 40.95 2.57
3399 4235 2.413112 GACACACGTCCTCATGTCAATG 59.587 50.000 7.97 0.00 40.95 2.82
3400 4236 2.037121 ACACACGTCCTCATGTCAATGA 59.963 45.455 0.00 0.00 40.61 2.57
3401 4237 3.264947 CACACGTCCTCATGTCAATGAT 58.735 45.455 0.00 0.00 41.97 2.45
3402 4238 3.308053 CACACGTCCTCATGTCAATGATC 59.692 47.826 0.00 0.00 41.97 2.92
3403 4239 3.196469 ACACGTCCTCATGTCAATGATCT 59.804 43.478 0.00 0.00 41.97 2.75
3404 4240 3.554731 CACGTCCTCATGTCAATGATCTG 59.445 47.826 0.00 0.00 41.97 2.90
3405 4241 3.196469 ACGTCCTCATGTCAATGATCTGT 59.804 43.478 0.00 0.00 41.97 3.41
3406 4242 4.186926 CGTCCTCATGTCAATGATCTGTT 58.813 43.478 0.00 0.00 41.97 3.16
3407 4243 4.033702 CGTCCTCATGTCAATGATCTGTTG 59.966 45.833 0.00 0.00 41.97 3.33
3408 4244 3.943381 TCCTCATGTCAATGATCTGTTGC 59.057 43.478 0.00 0.00 41.97 4.17
3409 4245 3.692593 CCTCATGTCAATGATCTGTTGCA 59.307 43.478 0.00 3.30 41.97 4.08
3410 4246 4.338400 CCTCATGTCAATGATCTGTTGCAT 59.662 41.667 0.00 5.24 41.97 3.96
3411 4247 5.494632 TCATGTCAATGATCTGTTGCATC 57.505 39.130 13.04 0.00 37.91 3.91
3412 4248 4.034742 TCATGTCAATGATCTGTTGCATCG 59.965 41.667 13.04 10.77 37.91 3.84
3413 4249 3.337358 TGTCAATGATCTGTTGCATCGT 58.663 40.909 0.00 0.00 0.00 3.73
3414 4250 3.125658 TGTCAATGATCTGTTGCATCGTG 59.874 43.478 0.00 0.00 0.00 4.35
3415 4251 3.371898 GTCAATGATCTGTTGCATCGTGA 59.628 43.478 0.00 0.00 0.00 4.35
3416 4252 3.371898 TCAATGATCTGTTGCATCGTGAC 59.628 43.478 0.00 0.00 0.00 3.67
3417 4253 1.725641 TGATCTGTTGCATCGTGACC 58.274 50.000 0.00 0.00 0.00 4.02
3418 4254 1.276138 TGATCTGTTGCATCGTGACCT 59.724 47.619 0.00 0.00 0.00 3.85
3419 4255 2.495669 TGATCTGTTGCATCGTGACCTA 59.504 45.455 0.00 0.00 0.00 3.08
3420 4256 2.654749 TCTGTTGCATCGTGACCTAG 57.345 50.000 0.00 0.00 0.00 3.02
3421 4257 1.204704 TCTGTTGCATCGTGACCTAGG 59.795 52.381 7.41 7.41 0.00 3.02
3422 4258 0.249120 TGTTGCATCGTGACCTAGGG 59.751 55.000 14.81 0.00 0.00 3.53
3423 4259 1.090052 GTTGCATCGTGACCTAGGGC 61.090 60.000 14.81 11.72 0.00 5.19
3424 4260 1.549243 TTGCATCGTGACCTAGGGCA 61.549 55.000 15.37 15.37 0.00 5.36
3425 4261 1.521681 GCATCGTGACCTAGGGCAC 60.522 63.158 34.62 34.62 0.00 5.01
3443 4279 5.500645 GGCACCCTCTGTTGTTTATAATC 57.499 43.478 0.00 0.00 0.00 1.75
3444 4280 4.338400 GGCACCCTCTGTTGTTTATAATCC 59.662 45.833 0.00 0.00 0.00 3.01
3445 4281 4.947388 GCACCCTCTGTTGTTTATAATCCA 59.053 41.667 0.00 0.00 0.00 3.41
3446 4282 5.417580 GCACCCTCTGTTGTTTATAATCCAA 59.582 40.000 0.00 0.00 0.00 3.53
3447 4283 6.404734 GCACCCTCTGTTGTTTATAATCCAAG 60.405 42.308 0.00 0.00 0.00 3.61
3448 4284 6.659242 CACCCTCTGTTGTTTATAATCCAAGT 59.341 38.462 0.00 0.00 0.00 3.16
3449 4285 6.884836 ACCCTCTGTTGTTTATAATCCAAGTC 59.115 38.462 0.00 0.00 0.00 3.01
3450 4286 7.112779 CCCTCTGTTGTTTATAATCCAAGTCT 58.887 38.462 0.00 0.00 0.00 3.24
3451 4287 7.281100 CCCTCTGTTGTTTATAATCCAAGTCTC 59.719 40.741 0.00 0.00 0.00 3.36
3452 4288 7.281100 CCTCTGTTGTTTATAATCCAAGTCTCC 59.719 40.741 0.00 0.00 0.00 3.71
3453 4289 7.918076 TCTGTTGTTTATAATCCAAGTCTCCT 58.082 34.615 0.00 0.00 0.00 3.69
3454 4290 8.041323 TCTGTTGTTTATAATCCAAGTCTCCTC 58.959 37.037 0.00 0.00 0.00 3.71
3455 4291 7.918076 TGTTGTTTATAATCCAAGTCTCCTCT 58.082 34.615 0.00 0.00 0.00 3.69
3456 4292 8.041323 TGTTGTTTATAATCCAAGTCTCCTCTC 58.959 37.037 0.00 0.00 0.00 3.20
3457 4293 7.125792 TGTTTATAATCCAAGTCTCCTCTCC 57.874 40.000 0.00 0.00 0.00 3.71
3458 4294 6.903534 TGTTTATAATCCAAGTCTCCTCTCCT 59.096 38.462 0.00 0.00 0.00 3.69
3459 4295 7.403231 TGTTTATAATCCAAGTCTCCTCTCCTT 59.597 37.037 0.00 0.00 0.00 3.36
3460 4296 7.996758 TTATAATCCAAGTCTCCTCTCCTTT 57.003 36.000 0.00 0.00 0.00 3.11
3461 4297 6.899892 ATAATCCAAGTCTCCTCTCCTTTT 57.100 37.500 0.00 0.00 0.00 2.27
3462 4298 7.996758 ATAATCCAAGTCTCCTCTCCTTTTA 57.003 36.000 0.00 0.00 0.00 1.52
3463 4299 5.948742 ATCCAAGTCTCCTCTCCTTTTAG 57.051 43.478 0.00 0.00 0.00 1.85
3464 4300 4.753186 TCCAAGTCTCCTCTCCTTTTAGT 58.247 43.478 0.00 0.00 0.00 2.24
3465 4301 5.155905 TCCAAGTCTCCTCTCCTTTTAGTT 58.844 41.667 0.00 0.00 0.00 2.24
3466 4302 5.607171 TCCAAGTCTCCTCTCCTTTTAGTTT 59.393 40.000 0.00 0.00 0.00 2.66
3467 4303 6.101296 TCCAAGTCTCCTCTCCTTTTAGTTTT 59.899 38.462 0.00 0.00 0.00 2.43
3468 4304 6.428465 CCAAGTCTCCTCTCCTTTTAGTTTTC 59.572 42.308 0.00 0.00 0.00 2.29
3469 4305 6.749036 AGTCTCCTCTCCTTTTAGTTTTCA 57.251 37.500 0.00 0.00 0.00 2.69
3470 4306 6.526526 AGTCTCCTCTCCTTTTAGTTTTCAC 58.473 40.000 0.00 0.00 0.00 3.18
3471 4307 6.327887 AGTCTCCTCTCCTTTTAGTTTTCACT 59.672 38.462 0.00 0.00 36.99 3.41
3472 4308 6.647481 GTCTCCTCTCCTTTTAGTTTTCACTC 59.353 42.308 0.00 0.00 34.06 3.51
3473 4309 6.555360 TCTCCTCTCCTTTTAGTTTTCACTCT 59.445 38.462 0.00 0.00 34.06 3.24
3474 4310 6.760291 TCCTCTCCTTTTAGTTTTCACTCTC 58.240 40.000 0.00 0.00 34.06 3.20
3475 4311 6.555360 TCCTCTCCTTTTAGTTTTCACTCTCT 59.445 38.462 0.00 0.00 34.06 3.10
3476 4312 7.071321 TCCTCTCCTTTTAGTTTTCACTCTCTT 59.929 37.037 0.00 0.00 34.06 2.85
3477 4313 7.386573 CCTCTCCTTTTAGTTTTCACTCTCTTC 59.613 40.741 0.00 0.00 34.06 2.87
3478 4314 6.924060 TCTCCTTTTAGTTTTCACTCTCTTCG 59.076 38.462 0.00 0.00 34.06 3.79
3479 4315 5.989777 TCCTTTTAGTTTTCACTCTCTTCGG 59.010 40.000 0.00 0.00 34.06 4.30
3480 4316 5.334182 CCTTTTAGTTTTCACTCTCTTCGGC 60.334 44.000 0.00 0.00 34.06 5.54
3481 4317 2.171341 AGTTTTCACTCTCTTCGGCC 57.829 50.000 0.00 0.00 0.00 6.13
3482 4318 1.416401 AGTTTTCACTCTCTTCGGCCA 59.584 47.619 2.24 0.00 0.00 5.36
3483 4319 2.039084 AGTTTTCACTCTCTTCGGCCAT 59.961 45.455 2.24 0.00 0.00 4.40
3484 4320 2.099141 TTTCACTCTCTTCGGCCATG 57.901 50.000 2.24 0.00 0.00 3.66
3485 4321 0.391661 TTCACTCTCTTCGGCCATGC 60.392 55.000 2.24 0.00 0.00 4.06
3486 4322 1.078918 CACTCTCTTCGGCCATGCA 60.079 57.895 2.24 0.00 0.00 3.96
3487 4323 1.078848 ACTCTCTTCGGCCATGCAC 60.079 57.895 2.24 0.00 0.00 4.57
3488 4324 1.817099 CTCTCTTCGGCCATGCACC 60.817 63.158 2.24 0.00 0.00 5.01
3489 4325 2.046023 CTCTTCGGCCATGCACCA 60.046 61.111 2.24 0.00 0.00 4.17
3490 4326 1.675310 CTCTTCGGCCATGCACCAA 60.675 57.895 2.24 0.00 0.00 3.67
3491 4327 1.651240 CTCTTCGGCCATGCACCAAG 61.651 60.000 2.24 6.41 0.00 3.61
3492 4328 3.346631 CTTCGGCCATGCACCAAGC 62.347 63.158 2.24 0.00 45.96 4.01
3493 4329 3.866379 TTCGGCCATGCACCAAGCT 62.866 57.895 2.24 0.00 45.94 3.74
3494 4330 3.818787 CGGCCATGCACCAAGCTC 61.819 66.667 2.24 0.00 45.94 4.09
3495 4331 2.677524 GGCCATGCACCAAGCTCA 60.678 61.111 0.00 0.00 45.94 4.26
3496 4332 2.056223 GGCCATGCACCAAGCTCAT 61.056 57.895 0.00 0.00 45.94 2.90
3497 4333 1.436336 GCCATGCACCAAGCTCATC 59.564 57.895 0.00 0.00 45.94 2.92
3498 4334 1.035932 GCCATGCACCAAGCTCATCT 61.036 55.000 0.00 0.00 45.94 2.90
3499 4335 1.022735 CCATGCACCAAGCTCATCTC 58.977 55.000 0.00 0.00 45.94 2.75
3500 4336 1.022735 CATGCACCAAGCTCATCTCC 58.977 55.000 0.00 0.00 45.94 3.71
3501 4337 0.622136 ATGCACCAAGCTCATCTCCA 59.378 50.000 0.00 0.00 45.94 3.86
3502 4338 0.622136 TGCACCAAGCTCATCTCCAT 59.378 50.000 0.00 0.00 45.94 3.41
3503 4339 1.022735 GCACCAAGCTCATCTCCATG 58.977 55.000 0.00 0.00 41.15 3.66
3504 4340 1.407851 GCACCAAGCTCATCTCCATGA 60.408 52.381 0.00 0.00 41.15 3.07
3505 4341 2.748798 GCACCAAGCTCATCTCCATGAT 60.749 50.000 0.00 0.00 38.42 2.45
3506 4342 3.495629 GCACCAAGCTCATCTCCATGATA 60.496 47.826 0.00 0.00 38.42 2.15
3507 4343 4.316645 CACCAAGCTCATCTCCATGATAG 58.683 47.826 0.00 0.00 38.42 2.08
3508 4344 3.327172 ACCAAGCTCATCTCCATGATAGG 59.673 47.826 0.00 0.00 38.42 2.57
3509 4345 3.581770 CCAAGCTCATCTCCATGATAGGA 59.418 47.826 0.00 0.00 38.42 2.94
3519 4355 4.475919 TCCATGATAGGAGACTCCATCA 57.524 45.455 25.73 25.73 43.67 3.07
3520 4356 4.819610 TCCATGATAGGAGACTCCATCAA 58.180 43.478 26.58 15.72 43.67 2.57
3521 4357 5.218959 TCCATGATAGGAGACTCCATCAAA 58.781 41.667 26.58 17.88 43.67 2.69
3522 4358 5.070981 TCCATGATAGGAGACTCCATCAAAC 59.929 44.000 26.58 13.64 43.67 2.93
3523 4359 5.303971 CATGATAGGAGACTCCATCAAACC 58.696 45.833 26.58 11.44 43.67 3.27
3524 4360 3.711704 TGATAGGAGACTCCATCAAACCC 59.288 47.826 23.60 4.38 43.67 4.11
3525 4361 2.350863 AGGAGACTCCATCAAACCCT 57.649 50.000 23.60 0.00 39.61 4.34
3526 4362 2.192263 AGGAGACTCCATCAAACCCTC 58.808 52.381 23.60 0.00 39.61 4.30
3527 4363 2.192263 GGAGACTCCATCAAACCCTCT 58.808 52.381 17.10 0.00 36.28 3.69
3528 4364 2.169561 GGAGACTCCATCAAACCCTCTC 59.830 54.545 17.10 0.00 36.28 3.20
3529 4365 3.103742 GAGACTCCATCAAACCCTCTCT 58.896 50.000 0.00 0.00 0.00 3.10
3530 4366 3.517500 GAGACTCCATCAAACCCTCTCTT 59.482 47.826 0.00 0.00 0.00 2.85
3531 4367 3.517500 AGACTCCATCAAACCCTCTCTTC 59.482 47.826 0.00 0.00 0.00 2.87
3532 4368 3.517500 GACTCCATCAAACCCTCTCTTCT 59.482 47.826 0.00 0.00 0.00 2.85
3533 4369 3.517500 ACTCCATCAAACCCTCTCTTCTC 59.482 47.826 0.00 0.00 0.00 2.87
3534 4370 3.774216 CTCCATCAAACCCTCTCTTCTCT 59.226 47.826 0.00 0.00 0.00 3.10
3535 4371 4.947883 TCCATCAAACCCTCTCTTCTCTA 58.052 43.478 0.00 0.00 0.00 2.43
3536 4372 4.712337 TCCATCAAACCCTCTCTTCTCTAC 59.288 45.833 0.00 0.00 0.00 2.59
3537 4373 4.141824 CCATCAAACCCTCTCTTCTCTACC 60.142 50.000 0.00 0.00 0.00 3.18
3538 4374 4.405756 TCAAACCCTCTCTTCTCTACCT 57.594 45.455 0.00 0.00 0.00 3.08
3539 4375 4.753186 TCAAACCCTCTCTTCTCTACCTT 58.247 43.478 0.00 0.00 0.00 3.50
3540 4376 4.773149 TCAAACCCTCTCTTCTCTACCTTC 59.227 45.833 0.00 0.00 0.00 3.46
3541 4377 4.405756 AACCCTCTCTTCTCTACCTTCA 57.594 45.455 0.00 0.00 0.00 3.02
3542 4378 3.703921 ACCCTCTCTTCTCTACCTTCAC 58.296 50.000 0.00 0.00 0.00 3.18
3543 4379 3.335484 ACCCTCTCTTCTCTACCTTCACT 59.665 47.826 0.00 0.00 0.00 3.41
3544 4380 3.951680 CCCTCTCTTCTCTACCTTCACTC 59.048 52.174 0.00 0.00 0.00 3.51
3545 4381 4.568804 CCCTCTCTTCTCTACCTTCACTCA 60.569 50.000 0.00 0.00 0.00 3.41
3546 4382 5.200483 CCTCTCTTCTCTACCTTCACTCAT 58.800 45.833 0.00 0.00 0.00 2.90
3547 4383 5.656416 CCTCTCTTCTCTACCTTCACTCATT 59.344 44.000 0.00 0.00 0.00 2.57
3548 4384 6.183360 CCTCTCTTCTCTACCTTCACTCATTC 60.183 46.154 0.00 0.00 0.00 2.67
3549 4385 6.249192 TCTCTTCTCTACCTTCACTCATTCA 58.751 40.000 0.00 0.00 0.00 2.57
3550 4386 6.894654 TCTCTTCTCTACCTTCACTCATTCAT 59.105 38.462 0.00 0.00 0.00 2.57
3551 4387 6.871844 TCTTCTCTACCTTCACTCATTCATG 58.128 40.000 0.00 0.00 0.00 3.07
3552 4388 5.016051 TCTCTACCTTCACTCATTCATGC 57.984 43.478 0.00 0.00 0.00 4.06
3553 4389 4.713814 TCTCTACCTTCACTCATTCATGCT 59.286 41.667 0.00 0.00 0.00 3.79
3554 4390 4.763073 TCTACCTTCACTCATTCATGCTG 58.237 43.478 0.00 0.00 0.00 4.41
3555 4391 3.708403 ACCTTCACTCATTCATGCTGA 57.292 42.857 0.00 0.00 0.00 4.26
3556 4392 3.341823 ACCTTCACTCATTCATGCTGAC 58.658 45.455 0.00 0.00 0.00 3.51
3557 4393 2.350804 CCTTCACTCATTCATGCTGACG 59.649 50.000 0.00 0.00 0.00 4.35
3558 4394 2.014335 TCACTCATTCATGCTGACGG 57.986 50.000 0.00 0.00 0.00 4.79
3559 4395 1.012086 CACTCATTCATGCTGACGGG 58.988 55.000 0.00 0.00 0.00 5.28
3560 4396 0.904649 ACTCATTCATGCTGACGGGA 59.095 50.000 0.00 0.00 0.00 5.14
3561 4397 1.293924 CTCATTCATGCTGACGGGAC 58.706 55.000 0.00 0.00 0.00 4.46
3562 4398 0.107703 TCATTCATGCTGACGGGACC 60.108 55.000 0.00 0.00 0.00 4.46
3563 4399 1.153369 ATTCATGCTGACGGGACCG 60.153 57.895 9.56 9.56 46.03 4.79
3564 4400 3.950794 TTCATGCTGACGGGACCGC 62.951 63.158 11.21 4.51 44.19 5.68
3565 4401 4.758251 CATGCTGACGGGACCGCA 62.758 66.667 11.21 8.96 44.19 5.69
3566 4402 4.457496 ATGCTGACGGGACCGCAG 62.457 66.667 22.15 22.15 44.19 5.18
3569 4405 4.680237 CTGACGGGACCGCAGCAA 62.680 66.667 11.21 0.00 44.19 3.91
3570 4406 4.980805 TGACGGGACCGCAGCAAC 62.981 66.667 11.21 0.00 44.19 4.17
3574 4410 4.643387 GGGACCGCAGCAACCTGT 62.643 66.667 0.00 0.00 41.26 4.00
3575 4411 3.050275 GGACCGCAGCAACCTGTC 61.050 66.667 0.00 0.00 41.26 3.51
3576 4412 3.414700 GACCGCAGCAACCTGTCG 61.415 66.667 0.00 0.00 41.26 4.35
3580 4416 3.649986 GCAGCAACCTGTCGCGTT 61.650 61.111 5.77 0.00 41.26 4.84
3581 4417 2.551270 CAGCAACCTGTCGCGTTC 59.449 61.111 5.77 1.06 34.31 3.95
3582 4418 3.036084 AGCAACCTGTCGCGTTCG 61.036 61.111 5.77 0.00 0.00 3.95
3583 4419 3.033764 GCAACCTGTCGCGTTCGA 61.034 61.111 5.77 0.00 43.28 3.71
3594 4430 2.182284 CGTTCGACCCACGCCATA 59.818 61.111 0.00 0.00 42.26 2.74
3595 4431 1.876714 CGTTCGACCCACGCCATAG 60.877 63.158 0.00 0.00 42.26 2.23
3596 4432 1.217244 GTTCGACCCACGCCATAGT 59.783 57.895 0.00 0.00 42.26 2.12
3597 4433 1.082117 GTTCGACCCACGCCATAGTG 61.082 60.000 0.00 0.00 42.26 2.74
3598 4434 1.252215 TTCGACCCACGCCATAGTGA 61.252 55.000 0.00 0.00 44.43 3.41
3599 4435 1.226974 CGACCCACGCCATAGTGAG 60.227 63.158 0.00 0.00 44.43 3.51
3600 4436 1.521681 GACCCACGCCATAGTGAGC 60.522 63.158 0.00 0.00 44.43 4.26
3601 4437 2.238847 GACCCACGCCATAGTGAGCA 62.239 60.000 0.00 0.00 44.43 4.26
3602 4438 1.146930 CCCACGCCATAGTGAGCAT 59.853 57.895 0.00 0.00 44.43 3.79
3603 4439 0.882042 CCCACGCCATAGTGAGCATC 60.882 60.000 0.00 0.00 44.43 3.91
3604 4440 0.882042 CCACGCCATAGTGAGCATCC 60.882 60.000 0.00 0.00 44.43 3.51
3605 4441 1.068083 ACGCCATAGTGAGCATCCG 59.932 57.895 0.00 0.00 0.00 4.18
3606 4442 1.363807 CGCCATAGTGAGCATCCGA 59.636 57.895 0.00 0.00 0.00 4.55
3607 4443 0.941463 CGCCATAGTGAGCATCCGAC 60.941 60.000 0.00 0.00 0.00 4.79
3608 4444 0.601311 GCCATAGTGAGCATCCGACC 60.601 60.000 0.00 0.00 0.00 4.79
3609 4445 0.752658 CCATAGTGAGCATCCGACCA 59.247 55.000 0.00 0.00 0.00 4.02
3610 4446 1.345741 CCATAGTGAGCATCCGACCAT 59.654 52.381 0.00 0.00 0.00 3.55
3611 4447 2.224378 CCATAGTGAGCATCCGACCATT 60.224 50.000 0.00 0.00 0.00 3.16
3612 4448 3.470709 CATAGTGAGCATCCGACCATTT 58.529 45.455 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.818674 CTTTTCAAATCCGTCCCCCTG 59.181 52.381 0.00 0.00 0.00 4.45
1 2 1.427753 ACTTTTCAAATCCGTCCCCCT 59.572 47.619 0.00 0.00 0.00 4.79
2 3 1.816835 GACTTTTCAAATCCGTCCCCC 59.183 52.381 0.00 0.00 0.00 5.40
3 4 1.816835 GGACTTTTCAAATCCGTCCCC 59.183 52.381 0.00 0.00 38.51 4.81
9 10 1.886542 ACAGCCGGACTTTTCAAATCC 59.113 47.619 5.05 0.00 0.00 3.01
10 11 4.000988 TCTACAGCCGGACTTTTCAAATC 58.999 43.478 5.05 0.00 0.00 2.17
11 12 4.003648 CTCTACAGCCGGACTTTTCAAAT 58.996 43.478 5.05 0.00 0.00 2.32
12 13 3.399330 CTCTACAGCCGGACTTTTCAAA 58.601 45.455 5.05 0.00 0.00 2.69
13 14 2.289444 CCTCTACAGCCGGACTTTTCAA 60.289 50.000 5.05 0.00 0.00 2.69
14 15 1.275291 CCTCTACAGCCGGACTTTTCA 59.725 52.381 5.05 0.00 0.00 2.69
15 16 1.405661 CCCTCTACAGCCGGACTTTTC 60.406 57.143 5.05 0.00 0.00 2.29
16 17 0.613777 CCCTCTACAGCCGGACTTTT 59.386 55.000 5.05 0.00 0.00 2.27
17 18 0.544595 ACCCTCTACAGCCGGACTTT 60.545 55.000 5.05 0.00 0.00 2.66
18 19 0.544595 AACCCTCTACAGCCGGACTT 60.545 55.000 5.05 0.00 0.00 3.01
19 20 1.078710 AACCCTCTACAGCCGGACT 59.921 57.895 5.05 0.00 0.00 3.85
20 21 1.218316 CAACCCTCTACAGCCGGAC 59.782 63.158 5.05 0.00 0.00 4.79
21 22 1.987855 CCAACCCTCTACAGCCGGA 60.988 63.158 5.05 0.00 0.00 5.14
22 23 1.338136 ATCCAACCCTCTACAGCCGG 61.338 60.000 0.00 0.00 0.00 6.13
23 24 0.105039 GATCCAACCCTCTACAGCCG 59.895 60.000 0.00 0.00 0.00 5.52
24 25 1.139853 CAGATCCAACCCTCTACAGCC 59.860 57.143 0.00 0.00 0.00 4.85
25 26 1.834263 ACAGATCCAACCCTCTACAGC 59.166 52.381 0.00 0.00 0.00 4.40
26 27 3.772025 AGAACAGATCCAACCCTCTACAG 59.228 47.826 0.00 0.00 0.00 2.74
27 28 3.769844 GAGAACAGATCCAACCCTCTACA 59.230 47.826 0.00 0.00 0.00 2.74
28 29 3.133183 GGAGAACAGATCCAACCCTCTAC 59.867 52.174 0.00 0.00 36.79 2.59
29 30 3.375699 GGAGAACAGATCCAACCCTCTA 58.624 50.000 0.00 0.00 36.79 2.43
30 31 2.192263 GGAGAACAGATCCAACCCTCT 58.808 52.381 0.00 0.00 36.79 3.69
31 32 1.134670 CGGAGAACAGATCCAACCCTC 60.135 57.143 0.00 0.00 36.57 4.30
32 33 0.905357 CGGAGAACAGATCCAACCCT 59.095 55.000 0.00 0.00 36.57 4.34
33 34 0.613777 ACGGAGAACAGATCCAACCC 59.386 55.000 0.00 0.00 36.57 4.11
52 53 3.647367 GCCATGGACTAGGAGGCA 58.353 61.111 18.40 0.00 44.59 4.75
60 61 2.270205 CCTTCGCAGCCATGGACT 59.730 61.111 18.40 9.58 0.00 3.85
63 64 3.197790 CGACCTTCGCAGCCATGG 61.198 66.667 7.63 7.63 31.14 3.66
64 65 2.434884 ACGACCTTCGCAGCCATG 60.435 61.111 0.00 0.00 45.12 3.66
65 66 2.434884 CACGACCTTCGCAGCCAT 60.435 61.111 0.00 0.00 45.12 4.40
80 81 0.391661 ATGTGATGGTCTCGTGGCAC 60.392 55.000 7.79 7.79 0.00 5.01
86 87 0.741326 AGGTCGATGTGATGGTCTCG 59.259 55.000 0.00 0.00 0.00 4.04
95 96 2.099141 ACATCCAACAGGTCGATGTG 57.901 50.000 0.00 0.00 43.74 3.21
118 119 1.472878 AGCTTTAGATCTGACGCGTCA 59.527 47.619 36.96 36.96 38.06 4.35
121 122 3.039405 CACTAGCTTTAGATCTGACGCG 58.961 50.000 3.53 3.53 0.00 6.01
124 125 4.367450 CTGGCACTAGCTTTAGATCTGAC 58.633 47.826 5.18 0.00 41.70 3.51
133 134 1.230635 CGTGTGCTGGCACTAGCTTT 61.231 55.000 23.30 0.00 46.30 3.51
212 213 1.589716 GCACTGTTCATGGCCACCTC 61.590 60.000 8.16 0.00 0.00 3.85
242 243 1.406751 CGCACTGGGTATGATGACCAA 60.407 52.381 0.00 0.00 41.73 3.67
243 244 0.177836 CGCACTGGGTATGATGACCA 59.822 55.000 0.00 0.00 41.73 4.02
244 245 1.160329 GCGCACTGGGTATGATGACC 61.160 60.000 0.30 0.00 38.93 4.02
248 249 1.146930 CTGGCGCACTGGGTATGAT 59.853 57.895 10.83 0.00 0.00 2.45
251 252 3.402681 AGCTGGCGCACTGGGTAT 61.403 61.111 10.83 0.00 39.10 2.73
256 257 1.370900 GTTTTCAGCTGGCGCACTG 60.371 57.895 15.13 13.92 39.10 3.66
257 258 1.510480 GAGTTTTCAGCTGGCGCACT 61.510 55.000 15.13 10.88 39.10 4.40
265 266 4.103311 AGGTTAGGACAAGAGTTTTCAGCT 59.897 41.667 0.00 0.00 0.00 4.24
288 919 2.915659 CGGAGCCCGGCCAGTATA 60.916 66.667 5.55 0.00 44.15 1.47
332 963 2.806244 GCAGGTAGACAACACGTTCAAT 59.194 45.455 0.00 0.00 0.00 2.57
340 971 2.093181 ACACAACAGCAGGTAGACAACA 60.093 45.455 0.00 0.00 0.00 3.33
347 978 1.476110 GGACCAACACAACAGCAGGTA 60.476 52.381 0.00 0.00 0.00 3.08
350 981 0.947244 GAGGACCAACACAACAGCAG 59.053 55.000 0.00 0.00 0.00 4.24
376 1007 4.698201 TTCATCTTGGTTACTGTGACCA 57.302 40.909 19.28 19.28 45.09 4.02
382 1013 7.219484 ACAAGGATTTTCATCTTGGTTACTG 57.781 36.000 0.00 0.00 0.00 2.74
383 1014 6.434340 GGACAAGGATTTTCATCTTGGTTACT 59.566 38.462 0.00 0.00 0.00 2.24
389 1020 4.697352 ACTCGGACAAGGATTTTCATCTTG 59.303 41.667 0.00 0.00 0.00 3.02
391 1022 4.020218 TGACTCGGACAAGGATTTTCATCT 60.020 41.667 0.00 0.00 0.00 2.90
394 1025 3.762407 TGACTCGGACAAGGATTTTCA 57.238 42.857 0.00 0.00 0.00 2.69
409 1040 3.941081 TCCGGCAGGAGATGACTC 58.059 61.111 0.00 0.00 42.75 3.36
419 1050 4.813526 CGTCGTCTCGTCCGGCAG 62.814 72.222 0.00 0.00 0.00 4.85
422 1053 2.022902 CATCGTCGTCTCGTCCGG 59.977 66.667 0.00 0.00 0.00 5.14
451 1082 3.278574 CAACGCCTTCATGAGGGATAAA 58.721 45.455 27.03 0.00 46.40 1.40
474 1105 2.431057 ACTAAATCGACTTCATCCCGCT 59.569 45.455 0.00 0.00 0.00 5.52
477 1108 6.159988 CCTATGACTAAATCGACTTCATCCC 58.840 44.000 0.00 0.00 0.00 3.85
481 1112 6.525578 ACACCTATGACTAAATCGACTTCA 57.474 37.500 0.00 0.00 0.00 3.02
500 1131 9.528018 CCATTACATGGTATGAAAATAAACACC 57.472 33.333 10.01 0.00 45.54 4.16
526 1157 4.434713 AATTTGGCAGTTATGACCGAAC 57.565 40.909 0.00 0.00 32.35 3.95
531 1162 7.042797 ACCATCATAATTTGGCAGTTATGAC 57.957 36.000 26.10 0.00 45.09 3.06
534 1165 8.976353 TGTTTACCATCATAATTTGGCAGTTAT 58.024 29.630 0.00 0.00 36.41 1.89
538 1169 9.985730 ATATTGTTTACCATCATAATTTGGCAG 57.014 29.630 0.00 0.00 36.41 4.85
674 1463 5.353394 AGATGGAGTATAAAGCCGTTCAA 57.647 39.130 0.00 0.00 0.00 2.69
676 1465 7.964604 AAATAGATGGAGTATAAAGCCGTTC 57.035 36.000 0.00 0.00 0.00 3.95
677 1466 9.490379 CTAAAATAGATGGAGTATAAAGCCGTT 57.510 33.333 0.00 0.00 0.00 4.44
678 1467 8.095169 CCTAAAATAGATGGAGTATAAAGCCGT 58.905 37.037 0.00 0.00 0.00 5.68
679 1468 7.549488 CCCTAAAATAGATGGAGTATAAAGCCG 59.451 40.741 0.00 0.00 0.00 5.52
682 1471 7.549488 CCGCCCTAAAATAGATGGAGTATAAAG 59.451 40.741 0.00 0.00 0.00 1.85
702 1495 5.130477 TCATTTTTATTACTCTCTCCGCCCT 59.870 40.000 0.00 0.00 0.00 5.19
711 1504 7.228507 TGTGCACACAGTCATTTTTATTACTCT 59.771 33.333 17.42 0.00 36.21 3.24
749 1543 5.361135 TTTCGAAAAGACGGATAAAACCC 57.639 39.130 8.44 0.00 0.00 4.11
775 1569 4.916831 CACATTTCACGCATGCTTTTAGAA 59.083 37.500 17.13 9.26 0.00 2.10
776 1570 4.215185 TCACATTTCACGCATGCTTTTAGA 59.785 37.500 17.13 3.31 0.00 2.10
777 1571 4.475028 TCACATTTCACGCATGCTTTTAG 58.525 39.130 17.13 1.61 0.00 1.85
778 1572 4.495911 TCACATTTCACGCATGCTTTTA 57.504 36.364 17.13 0.00 0.00 1.52
779 1573 3.367992 TCACATTTCACGCATGCTTTT 57.632 38.095 17.13 0.00 0.00 2.27
780 1574 3.052036 GTTCACATTTCACGCATGCTTT 58.948 40.909 17.13 0.00 0.00 3.51
783 1577 0.976963 CGTTCACATTTCACGCATGC 59.023 50.000 7.91 7.91 0.00 4.06
784 1578 1.971284 CACGTTCACATTTCACGCATG 59.029 47.619 0.00 0.00 37.44 4.06
785 1579 1.601903 ACACGTTCACATTTCACGCAT 59.398 42.857 0.00 0.00 37.44 4.73
786 1580 1.010580 ACACGTTCACATTTCACGCA 58.989 45.000 0.00 0.00 37.44 5.24
787 1581 1.004398 TCACACGTTCACATTTCACGC 60.004 47.619 0.00 0.00 37.44 5.34
788 1582 3.026349 GTTCACACGTTCACATTTCACG 58.974 45.455 0.00 0.00 39.86 4.35
790 1584 2.356382 GGGTTCACACGTTCACATTTCA 59.644 45.455 0.00 0.00 0.00 2.69
791 1585 2.356382 TGGGTTCACACGTTCACATTTC 59.644 45.455 0.00 0.00 0.00 2.17
792 1586 2.098443 GTGGGTTCACACGTTCACATTT 59.902 45.455 0.00 0.00 43.13 2.32
795 1589 2.770134 GTGGGTTCACACGTTCACA 58.230 52.632 0.00 0.00 43.13 3.58
838 1633 6.035112 GCTTTCAGTGCTAGTACTATGAACAC 59.965 42.308 13.52 13.57 0.00 3.32
840 1635 5.520649 GGCTTTCAGTGCTAGTACTATGAAC 59.479 44.000 13.52 8.57 0.00 3.18
845 1640 3.087031 ACGGCTTTCAGTGCTAGTACTA 58.913 45.455 13.52 1.89 0.00 1.82
846 1641 1.893801 ACGGCTTTCAGTGCTAGTACT 59.106 47.619 7.78 7.78 0.00 2.73
847 1642 2.365408 ACGGCTTTCAGTGCTAGTAC 57.635 50.000 2.24 2.24 0.00 2.73
850 1645 0.166814 GCAACGGCTTTCAGTGCTAG 59.833 55.000 0.00 0.00 36.96 3.42
887 1684 4.504340 GCAGCCCCGGTTTCTATTTATAGA 60.504 45.833 0.00 0.00 37.60 1.98
911 1708 2.203480 ACTGGTGCCAATTGCCGT 60.203 55.556 0.00 0.00 40.16 5.68
913 1710 1.907807 TGGACTGGTGCCAATTGCC 60.908 57.895 0.00 0.00 40.16 4.52
915 1712 1.259609 ATGTGGACTGGTGCCAATTG 58.740 50.000 0.00 0.00 37.12 2.32
1099 1899 2.116125 GTCAAGCAGGTTGGGGCT 59.884 61.111 12.42 0.00 43.46 5.19
1314 2114 4.334118 TGCCAGTGCGTCATGCCT 62.334 61.111 0.00 0.00 45.60 4.75
1470 2270 2.361104 TTGCCGAGCCAATCCACC 60.361 61.111 0.00 0.00 0.00 4.61
1584 2384 3.249189 AGCTTCCGGTCCCTTGCA 61.249 61.111 0.00 0.00 0.00 4.08
2286 3086 1.760613 ACAACCTCAAACCTCTCGTCA 59.239 47.619 0.00 0.00 0.00 4.35
2403 3209 3.644399 GACCGCGTTCACCTCCTCC 62.644 68.421 4.92 0.00 0.00 4.30
2424 3230 2.822399 CTCATGTAGGGGCCGGAC 59.178 66.667 5.05 0.00 0.00 4.79
2582 3392 5.100943 GCAAGTTCGTAGGTTACTTAGAGG 58.899 45.833 0.00 0.00 31.30 3.69
2588 3398 4.280174 TCTTCTGCAAGTTCGTAGGTTACT 59.720 41.667 0.00 0.00 33.76 2.24
2629 3439 3.403038 CCCGCCTAATTATTGAGGTGAG 58.597 50.000 7.05 0.00 44.68 3.51
2635 3445 1.477923 GGTGGCCCGCCTAATTATTGA 60.478 52.381 5.94 0.00 36.94 2.57
2655 3465 4.753610 AGTACAATCCTCATGCATGATTCG 59.246 41.667 28.81 17.37 36.02 3.34
2698 3508 9.605275 AAGTAGTAGTACATTACACGAGATACA 57.395 33.333 10.33 0.00 0.00 2.29
2699 3509 9.861138 CAAGTAGTAGTACATTACACGAGATAC 57.139 37.037 10.33 0.00 0.00 2.24
2700 3510 8.554528 GCAAGTAGTAGTACATTACACGAGATA 58.445 37.037 10.33 0.00 0.00 1.98
2701 3511 7.282675 AGCAAGTAGTAGTACATTACACGAGAT 59.717 37.037 10.33 0.00 0.00 2.75
2702 3512 6.596888 AGCAAGTAGTAGTACATTACACGAGA 59.403 38.462 10.33 0.00 0.00 4.04
2703 3513 6.783162 AGCAAGTAGTAGTACATTACACGAG 58.217 40.000 10.33 0.00 0.00 4.18
2704 3514 6.748333 AGCAAGTAGTAGTACATTACACGA 57.252 37.500 10.33 0.00 0.00 4.35
2705 3515 7.807687 AAAGCAAGTAGTAGTACATTACACG 57.192 36.000 10.33 0.00 0.00 4.49
2706 3516 8.985805 ACAAAAGCAAGTAGTAGTACATTACAC 58.014 33.333 10.33 0.00 0.00 2.90
2865 3676 3.244665 TGAAGCAGGAACACATGATCAGT 60.245 43.478 0.00 0.00 0.00 3.41
2866 3677 3.340928 TGAAGCAGGAACACATGATCAG 58.659 45.455 0.00 0.00 0.00 2.90
2868 3679 4.157289 ACAATGAAGCAGGAACACATGATC 59.843 41.667 0.00 0.00 0.00 2.92
2871 3682 3.928727 ACAATGAAGCAGGAACACATG 57.071 42.857 0.00 0.00 0.00 3.21
2881 3692 7.550551 TGGAAATACAACAAAAACAATGAAGCA 59.449 29.630 0.00 0.00 0.00 3.91
2904 3715 5.465390 GCAATAATGTAAGCGATGTAGTGGA 59.535 40.000 0.00 0.00 0.00 4.02
2905 3716 5.236263 TGCAATAATGTAAGCGATGTAGTGG 59.764 40.000 0.00 0.00 0.00 4.00
2906 3717 6.285790 TGCAATAATGTAAGCGATGTAGTG 57.714 37.500 0.00 0.00 0.00 2.74
2915 3745 3.059597 AGACGCGATGCAATAATGTAAGC 60.060 43.478 15.93 0.00 0.00 3.09
2920 3750 3.964347 CAGAAAGACGCGATGCAATAATG 59.036 43.478 15.93 0.00 0.00 1.90
2921 3751 3.546815 GCAGAAAGACGCGATGCAATAAT 60.547 43.478 15.93 0.00 36.88 1.28
2928 3758 2.532531 ATTTGCAGAAAGACGCGATG 57.467 45.000 15.93 2.36 0.00 3.84
2933 3763 9.507280 AATGAATACATTATTTGCAGAAAGACG 57.493 29.630 0.00 0.00 43.77 4.18
2955 3785 9.838975 GTTTGTGTGATTAATGTACATCAATGA 57.161 29.630 9.04 0.00 31.14 2.57
2966 3796 8.382130 GCCAATACAATGTTTGTGTGATTAATG 58.618 33.333 3.22 0.00 45.03 1.90
2973 3803 5.523188 AGTTTGCCAATACAATGTTTGTGTG 59.477 36.000 3.22 2.03 45.03 3.82
2975 3805 5.984926 AGAGTTTGCCAATACAATGTTTGTG 59.015 36.000 3.22 0.00 45.03 3.33
2977 3807 8.761575 ATAAGAGTTTGCCAATACAATGTTTG 57.238 30.769 0.00 0.00 0.00 2.93
2983 3819 8.465999 CCAATGTATAAGAGTTTGCCAATACAA 58.534 33.333 0.00 0.00 34.52 2.41
3010 3846 1.268589 CCGATCTGCAGTAGTGGTACG 60.269 57.143 14.67 8.67 33.97 3.67
3017 3853 3.377346 AATAGCACCGATCTGCAGTAG 57.623 47.619 14.67 6.25 39.86 2.57
3039 3875 2.247699 TGTGTGTGATAGGTAGGGCT 57.752 50.000 0.00 0.00 0.00 5.19
3042 3878 6.085555 ACGATATTGTGTGTGATAGGTAGG 57.914 41.667 0.00 0.00 0.00 3.18
3044 3880 5.528320 TCGACGATATTGTGTGTGATAGGTA 59.472 40.000 0.00 0.00 0.00 3.08
3045 3881 4.337274 TCGACGATATTGTGTGTGATAGGT 59.663 41.667 0.00 0.00 0.00 3.08
3046 3882 4.855531 TCGACGATATTGTGTGTGATAGG 58.144 43.478 0.00 0.00 0.00 2.57
3047 3883 6.993175 ATTCGACGATATTGTGTGTGATAG 57.007 37.500 0.00 0.00 0.00 2.08
3048 3884 8.911662 CATAATTCGACGATATTGTGTGTGATA 58.088 33.333 0.00 0.00 0.00 2.15
3049 3885 7.438160 ACATAATTCGACGATATTGTGTGTGAT 59.562 33.333 21.82 8.02 35.59 3.06
3050 3886 6.754675 ACATAATTCGACGATATTGTGTGTGA 59.245 34.615 21.82 0.00 35.59 3.58
3051 3887 6.933130 ACATAATTCGACGATATTGTGTGTG 58.067 36.000 21.82 12.69 35.59 3.82
3052 3888 6.200286 GGACATAATTCGACGATATTGTGTGT 59.800 38.462 24.71 18.74 36.59 3.72
3053 3889 6.581370 GGACATAATTCGACGATATTGTGTG 58.419 40.000 24.71 16.96 36.59 3.82
3054 3890 5.401376 CGGACATAATTCGACGATATTGTGT 59.599 40.000 22.24 22.24 38.34 3.72
3055 3891 5.627780 TCGGACATAATTCGACGATATTGTG 59.372 40.000 18.46 18.46 0.00 3.33
3056 3892 5.765176 TCGGACATAATTCGACGATATTGT 58.235 37.500 0.00 0.00 0.00 2.71
3057 3893 6.526674 TCATCGGACATAATTCGACGATATTG 59.473 38.462 0.00 0.00 38.80 1.90
3058 3894 6.617879 TCATCGGACATAATTCGACGATATT 58.382 36.000 0.00 4.61 38.80 1.28
3064 3900 5.041287 TGACTTCATCGGACATAATTCGAC 58.959 41.667 0.00 0.00 35.70 4.20
3080 3916 4.048241 TGTAACGTGTGTGATGACTTCA 57.952 40.909 0.00 0.00 0.00 3.02
3086 3922 5.163302 TCCTTTTTGTAACGTGTGTGATG 57.837 39.130 0.00 0.00 0.00 3.07
3096 3932 5.815222 AGGCACACAATTTCCTTTTTGTAAC 59.185 36.000 0.00 0.00 34.42 2.50
3100 3936 4.440880 TGAGGCACACAATTTCCTTTTTG 58.559 39.130 0.00 0.00 0.00 2.44
3101 3937 4.751767 TGAGGCACACAATTTCCTTTTT 57.248 36.364 0.00 0.00 0.00 1.94
3106 3942 3.068024 TCACTTTGAGGCACACAATTTCC 59.932 43.478 0.00 0.00 38.93 3.13
3107 3943 4.305989 TCACTTTGAGGCACACAATTTC 57.694 40.909 0.00 0.00 38.93 2.17
3144 3980 2.756207 CCAATCAAGCATGATGTGGTGA 59.244 45.455 17.63 0.00 45.60 4.02
3147 3983 1.411246 CCCCAATCAAGCATGATGTGG 59.589 52.381 18.37 18.37 45.60 4.17
3154 3990 2.925966 TTCCTTCCCCAATCAAGCAT 57.074 45.000 0.00 0.00 0.00 3.79
3155 3991 2.632512 GTTTTCCTTCCCCAATCAAGCA 59.367 45.455 0.00 0.00 0.00 3.91
3158 3994 4.719273 ACAAAGTTTTCCTTCCCCAATCAA 59.281 37.500 0.00 0.00 31.27 2.57
3177 4013 4.766373 ACCATGTGCATAGAATCACACAAA 59.234 37.500 0.00 0.00 45.33 2.83
3179 4015 3.954200 ACCATGTGCATAGAATCACACA 58.046 40.909 0.00 0.00 44.74 3.72
3183 4019 6.829849 TGATAGAACCATGTGCATAGAATCA 58.170 36.000 0.00 0.00 0.00 2.57
3188 4024 5.819379 ACTGTTGATAGAACCATGTGCATAG 59.181 40.000 0.00 0.00 0.00 2.23
3189 4025 5.744171 ACTGTTGATAGAACCATGTGCATA 58.256 37.500 0.00 0.00 0.00 3.14
3190 4026 4.592942 ACTGTTGATAGAACCATGTGCAT 58.407 39.130 0.00 0.00 0.00 3.96
3224 4060 1.746787 ACAACCCACGAACCTTTGTTC 59.253 47.619 0.00 0.00 46.05 3.18
3225 4061 1.842052 ACAACCCACGAACCTTTGTT 58.158 45.000 0.00 0.00 37.42 2.83
3226 4062 1.842052 AACAACCCACGAACCTTTGT 58.158 45.000 0.00 0.00 31.74 2.83
3227 4063 4.577834 ATTAACAACCCACGAACCTTTG 57.422 40.909 0.00 0.00 0.00 2.77
3228 4064 5.593502 TGTAATTAACAACCCACGAACCTTT 59.406 36.000 0.00 0.00 34.29 3.11
3229 4065 5.131784 TGTAATTAACAACCCACGAACCTT 58.868 37.500 0.00 0.00 34.29 3.50
3230 4066 4.716794 TGTAATTAACAACCCACGAACCT 58.283 39.130 0.00 0.00 34.29 3.50
3231 4067 5.435820 TTGTAATTAACAACCCACGAACC 57.564 39.130 0.00 0.00 43.22 3.62
3232 4068 4.913345 GCTTGTAATTAACAACCCACGAAC 59.087 41.667 0.00 0.00 43.22 3.95
3233 4069 4.579340 TGCTTGTAATTAACAACCCACGAA 59.421 37.500 0.00 0.00 43.22 3.85
3234 4070 4.135306 TGCTTGTAATTAACAACCCACGA 58.865 39.130 0.00 0.00 43.22 4.35
3235 4071 4.491234 TGCTTGTAATTAACAACCCACG 57.509 40.909 0.00 0.00 43.22 4.94
3236 4072 8.996024 AATATTGCTTGTAATTAACAACCCAC 57.004 30.769 0.00 0.00 43.22 4.61
3260 4096 9.811995 ACGCATAGTCTCTATGTATGTTTTAAA 57.188 29.630 15.22 0.00 0.00 1.52
3263 4099 9.811995 TTTACGCATAGTCTCTATGTATGTTTT 57.188 29.630 15.22 0.46 0.00 2.43
3264 4100 9.811995 TTTTACGCATAGTCTCTATGTATGTTT 57.188 29.630 15.22 1.45 0.00 2.83
3265 4101 9.245962 GTTTTACGCATAGTCTCTATGTATGTT 57.754 33.333 15.22 2.71 0.00 2.71
3266 4102 8.410912 TGTTTTACGCATAGTCTCTATGTATGT 58.589 33.333 15.22 13.51 0.00 2.29
3267 4103 8.797266 TGTTTTACGCATAGTCTCTATGTATG 57.203 34.615 15.22 9.79 0.00 2.39
3268 4104 9.982651 ATTGTTTTACGCATAGTCTCTATGTAT 57.017 29.630 15.22 8.50 0.00 2.29
3269 4105 9.811995 AATTGTTTTACGCATAGTCTCTATGTA 57.188 29.630 15.22 2.34 0.00 2.29
3270 4106 8.718102 AATTGTTTTACGCATAGTCTCTATGT 57.282 30.769 15.22 3.10 0.00 2.29
3274 4110 9.988350 CATTTAATTGTTTTACGCATAGTCTCT 57.012 29.630 0.00 0.00 0.00 3.10
3275 4111 9.982291 TCATTTAATTGTTTTACGCATAGTCTC 57.018 29.630 0.00 0.00 0.00 3.36
3281 4117 9.800433 TGATGATCATTTAATTGTTTTACGCAT 57.200 25.926 10.14 0.00 0.00 4.73
3282 4118 9.800433 ATGATGATCATTTAATTGTTTTACGCA 57.200 25.926 10.14 0.00 32.13 5.24
3301 4137 9.842775 ACATGACAATAAGAACTACATGATGAT 57.157 29.630 0.00 0.00 37.59 2.45
3302 4138 9.671279 AACATGACAATAAGAACTACATGATGA 57.329 29.630 0.00 0.00 37.59 2.92
3305 4141 8.236586 GCAAACATGACAATAAGAACTACATGA 58.763 33.333 0.00 0.00 37.59 3.07
3306 4142 8.022550 TGCAAACATGACAATAAGAACTACATG 58.977 33.333 0.00 0.00 39.27 3.21
3307 4143 8.109705 TGCAAACATGACAATAAGAACTACAT 57.890 30.769 0.00 0.00 0.00 2.29
3308 4144 7.503521 TGCAAACATGACAATAAGAACTACA 57.496 32.000 0.00 0.00 0.00 2.74
3309 4145 7.061094 GCTTGCAAACATGACAATAAGAACTAC 59.939 37.037 0.00 0.00 0.00 2.73
3310 4146 7.083858 GCTTGCAAACATGACAATAAGAACTA 58.916 34.615 0.00 0.00 0.00 2.24
3311 4147 5.922544 GCTTGCAAACATGACAATAAGAACT 59.077 36.000 0.00 0.00 0.00 3.01
3312 4148 5.164158 CGCTTGCAAACATGACAATAAGAAC 60.164 40.000 0.00 0.00 0.00 3.01
3313 4149 4.916831 CGCTTGCAAACATGACAATAAGAA 59.083 37.500 0.00 0.00 0.00 2.52
3314 4150 4.023279 ACGCTTGCAAACATGACAATAAGA 60.023 37.500 0.00 0.00 0.00 2.10
3315 4151 4.229096 ACGCTTGCAAACATGACAATAAG 58.771 39.130 0.00 0.00 0.00 1.73
3316 4152 4.235939 ACGCTTGCAAACATGACAATAA 57.764 36.364 0.00 0.00 0.00 1.40
3317 4153 3.913548 ACGCTTGCAAACATGACAATA 57.086 38.095 0.00 0.00 0.00 1.90
3318 4154 2.796031 CAACGCTTGCAAACATGACAAT 59.204 40.909 0.00 0.00 0.00 2.71
3319 4155 2.191802 CAACGCTTGCAAACATGACAA 58.808 42.857 0.00 0.00 0.00 3.18
3320 4156 1.133982 ACAACGCTTGCAAACATGACA 59.866 42.857 0.00 0.00 0.00 3.58
3321 4157 1.518102 CACAACGCTTGCAAACATGAC 59.482 47.619 0.00 0.00 0.00 3.06
3322 4158 1.535649 CCACAACGCTTGCAAACATGA 60.536 47.619 0.00 0.00 0.00 3.07
3323 4159 0.854062 CCACAACGCTTGCAAACATG 59.146 50.000 0.00 0.75 0.00 3.21
3324 4160 0.875474 GCCACAACGCTTGCAAACAT 60.875 50.000 0.00 0.00 0.00 2.71
3325 4161 1.518133 GCCACAACGCTTGCAAACA 60.518 52.632 0.00 0.00 0.00 2.83
3326 4162 2.576002 CGCCACAACGCTTGCAAAC 61.576 57.895 0.00 0.00 0.00 2.93
3327 4163 2.278466 CGCCACAACGCTTGCAAA 60.278 55.556 0.00 0.00 0.00 3.68
3328 4164 3.513438 ACGCCACAACGCTTGCAA 61.513 55.556 0.00 0.00 36.19 4.08
3329 4165 4.249020 CACGCCACAACGCTTGCA 62.249 61.111 0.00 0.00 36.19 4.08
3330 4166 3.254014 ATCACGCCACAACGCTTGC 62.254 57.895 0.00 0.00 36.19 4.01
3331 4167 1.154413 GATCACGCCACAACGCTTG 60.154 57.895 0.00 0.00 36.19 4.01
3332 4168 2.325082 GGATCACGCCACAACGCTT 61.325 57.895 0.00 0.00 36.19 4.68
3333 4169 2.742372 GGATCACGCCACAACGCT 60.742 61.111 0.00 0.00 36.19 5.07
3334 4170 4.147322 CGGATCACGCCACAACGC 62.147 66.667 0.00 0.00 36.19 4.84
3335 4171 1.955529 CTTCGGATCACGCCACAACG 61.956 60.000 0.00 0.00 43.86 4.10
3336 4172 1.635663 CCTTCGGATCACGCCACAAC 61.636 60.000 0.00 0.00 43.86 3.32
3337 4173 1.375396 CCTTCGGATCACGCCACAA 60.375 57.895 0.00 0.00 43.86 3.33
3338 4174 2.264480 CCTTCGGATCACGCCACA 59.736 61.111 0.00 0.00 43.86 4.17
3339 4175 3.195698 GCCTTCGGATCACGCCAC 61.196 66.667 0.00 0.00 43.86 5.01
3340 4176 4.467084 GGCCTTCGGATCACGCCA 62.467 66.667 0.00 0.00 43.86 5.69
3341 4177 4.162690 AGGCCTTCGGATCACGCC 62.163 66.667 0.00 0.00 43.86 5.68
3342 4178 2.586357 GAGGCCTTCGGATCACGC 60.586 66.667 6.77 0.00 43.86 5.34
3343 4179 2.107141 GGAGGCCTTCGGATCACG 59.893 66.667 6.77 0.00 46.11 4.35
3344 4180 1.045911 AGAGGAGGCCTTCGGATCAC 61.046 60.000 6.77 0.00 31.76 3.06
3345 4181 1.045350 CAGAGGAGGCCTTCGGATCA 61.045 60.000 6.77 0.00 31.76 2.92
3346 4182 1.045911 ACAGAGGAGGCCTTCGGATC 61.046 60.000 6.77 0.00 31.76 3.36
3347 4183 0.618968 AACAGAGGAGGCCTTCGGAT 60.619 55.000 6.77 0.00 31.76 4.18
3348 4184 0.836400 AAACAGAGGAGGCCTTCGGA 60.836 55.000 6.77 0.00 31.76 4.55
3349 4185 0.036875 AAAACAGAGGAGGCCTTCGG 59.963 55.000 6.77 4.63 31.76 4.30
3350 4186 1.897560 AAAAACAGAGGAGGCCTTCG 58.102 50.000 6.77 0.00 31.76 3.79
3351 4187 3.751518 TGTAAAAACAGAGGAGGCCTTC 58.248 45.455 6.77 3.97 31.76 3.46
3352 4188 3.394606 TCTGTAAAAACAGAGGAGGCCTT 59.605 43.478 6.77 0.00 41.34 4.35
3353 4189 2.979678 TCTGTAAAAACAGAGGAGGCCT 59.020 45.455 3.86 3.86 41.34 5.19
3354 4190 3.418684 TCTGTAAAAACAGAGGAGGCC 57.581 47.619 4.16 0.00 41.34 5.19
3355 4191 4.216472 CCTTTCTGTAAAAACAGAGGAGGC 59.784 45.833 18.76 0.00 46.04 4.70
3356 4192 5.470437 GTCCTTTCTGTAAAAACAGAGGAGG 59.530 44.000 21.84 21.84 46.04 4.30
3357 4193 6.017852 GTGTCCTTTCTGTAAAAACAGAGGAG 60.018 42.308 13.74 12.38 46.04 3.69
3358 4194 5.820947 GTGTCCTTTCTGTAAAAACAGAGGA 59.179 40.000 10.74 10.74 46.04 3.71
3359 4195 5.588648 TGTGTCCTTTCTGTAAAAACAGAGG 59.411 40.000 8.13 7.65 46.04 3.69
3360 4196 6.487103 GTGTGTCCTTTCTGTAAAAACAGAG 58.513 40.000 8.13 0.00 46.04 3.35
3361 4197 5.064198 CGTGTGTCCTTTCTGTAAAAACAGA 59.936 40.000 4.16 4.16 44.15 3.41
3362 4198 5.163794 ACGTGTGTCCTTTCTGTAAAAACAG 60.164 40.000 0.00 0.00 39.00 3.16
3363 4199 4.696402 ACGTGTGTCCTTTCTGTAAAAACA 59.304 37.500 0.00 0.00 0.00 2.83
3364 4200 5.225899 ACGTGTGTCCTTTCTGTAAAAAC 57.774 39.130 0.00 0.00 0.00 2.43
3365 4201 5.473796 GACGTGTGTCCTTTCTGTAAAAA 57.526 39.130 0.00 0.00 39.30 1.94
3378 4214 2.148916 TTGACATGAGGACGTGTGTC 57.851 50.000 0.00 0.01 44.92 3.67
3379 4215 2.037121 TCATTGACATGAGGACGTGTGT 59.963 45.455 0.00 0.00 44.92 3.72
3380 4216 2.687370 TCATTGACATGAGGACGTGTG 58.313 47.619 0.00 0.00 44.92 3.82
3382 4218 3.554731 CAGATCATTGACATGAGGACGTG 59.445 47.826 0.00 0.00 42.93 4.49
3383 4219 3.196469 ACAGATCATTGACATGAGGACGT 59.804 43.478 0.00 0.00 42.93 4.34
3384 4220 3.790091 ACAGATCATTGACATGAGGACG 58.210 45.455 0.00 0.00 42.93 4.79
3385 4221 4.201891 GCAACAGATCATTGACATGAGGAC 60.202 45.833 12.56 0.00 42.93 3.85
3386 4222 3.943381 GCAACAGATCATTGACATGAGGA 59.057 43.478 12.56 0.00 42.93 3.71
3387 4223 3.692593 TGCAACAGATCATTGACATGAGG 59.307 43.478 12.56 1.18 42.93 3.86
3388 4224 4.957759 TGCAACAGATCATTGACATGAG 57.042 40.909 12.56 1.75 42.93 2.90
3389 4225 4.034742 CGATGCAACAGATCATTGACATGA 59.965 41.667 12.56 0.00 43.85 3.07
3390 4226 4.201881 ACGATGCAACAGATCATTGACATG 60.202 41.667 12.56 0.00 29.71 3.21
3391 4227 3.943381 ACGATGCAACAGATCATTGACAT 59.057 39.130 12.56 13.39 31.15 3.06
3392 4228 3.125658 CACGATGCAACAGATCATTGACA 59.874 43.478 12.56 10.14 0.00 3.58
3393 4229 3.371898 TCACGATGCAACAGATCATTGAC 59.628 43.478 12.56 5.84 0.00 3.18
3394 4230 3.371898 GTCACGATGCAACAGATCATTGA 59.628 43.478 12.56 0.00 0.00 2.57
3395 4231 3.486375 GGTCACGATGCAACAGATCATTG 60.486 47.826 0.00 0.03 0.00 2.82
3396 4232 2.679837 GGTCACGATGCAACAGATCATT 59.320 45.455 0.00 0.00 0.00 2.57
3397 4233 2.093288 AGGTCACGATGCAACAGATCAT 60.093 45.455 0.00 0.00 0.00 2.45
3398 4234 1.276138 AGGTCACGATGCAACAGATCA 59.724 47.619 0.00 0.00 0.00 2.92
3399 4235 2.015736 AGGTCACGATGCAACAGATC 57.984 50.000 0.00 0.00 0.00 2.75
3400 4236 2.159043 CCTAGGTCACGATGCAACAGAT 60.159 50.000 0.00 0.00 0.00 2.90
3401 4237 1.204704 CCTAGGTCACGATGCAACAGA 59.795 52.381 0.00 0.00 0.00 3.41
3402 4238 1.645034 CCTAGGTCACGATGCAACAG 58.355 55.000 0.00 0.00 0.00 3.16
3403 4239 0.249120 CCCTAGGTCACGATGCAACA 59.751 55.000 8.29 0.00 0.00 3.33
3404 4240 1.090052 GCCCTAGGTCACGATGCAAC 61.090 60.000 8.29 0.00 0.00 4.17
3405 4241 1.220749 GCCCTAGGTCACGATGCAA 59.779 57.895 8.29 0.00 0.00 4.08
3406 4242 1.987306 TGCCCTAGGTCACGATGCA 60.987 57.895 8.29 5.23 0.00 3.96
3407 4243 1.521681 GTGCCCTAGGTCACGATGC 60.522 63.158 7.28 1.92 0.00 3.91
3408 4244 1.144057 GGTGCCCTAGGTCACGATG 59.856 63.158 16.40 0.00 33.06 3.84
3409 4245 2.064581 GGGTGCCCTAGGTCACGAT 61.065 63.158 16.40 0.00 33.06 3.73
3410 4246 2.682494 GGGTGCCCTAGGTCACGA 60.682 66.667 16.40 0.00 33.06 4.35
3411 4247 2.683933 AGGGTGCCCTAGGTCACG 60.684 66.667 16.40 0.00 46.14 4.35
3420 4256 2.215942 ATAAACAACAGAGGGTGCCC 57.784 50.000 0.00 0.00 0.00 5.36
3421 4257 4.338400 GGATTATAAACAACAGAGGGTGCC 59.662 45.833 0.00 0.00 0.00 5.01
3422 4258 4.947388 TGGATTATAAACAACAGAGGGTGC 59.053 41.667 0.00 0.00 0.00 5.01
3423 4259 6.659242 ACTTGGATTATAAACAACAGAGGGTG 59.341 38.462 2.79 0.00 0.00 4.61
3424 4260 6.790319 ACTTGGATTATAAACAACAGAGGGT 58.210 36.000 2.79 0.00 0.00 4.34
3425 4261 7.112779 AGACTTGGATTATAAACAACAGAGGG 58.887 38.462 2.79 0.00 0.00 4.30
3426 4262 7.281100 GGAGACTTGGATTATAAACAACAGAGG 59.719 40.741 2.79 0.00 0.00 3.69
3427 4263 8.043710 AGGAGACTTGGATTATAAACAACAGAG 58.956 37.037 2.79 0.00 37.44 3.35
3428 4264 7.918076 AGGAGACTTGGATTATAAACAACAGA 58.082 34.615 2.79 0.00 37.44 3.41
3429 4265 8.043710 AGAGGAGACTTGGATTATAAACAACAG 58.956 37.037 2.79 0.00 44.43 3.16
3430 4266 7.918076 AGAGGAGACTTGGATTATAAACAACA 58.082 34.615 2.79 0.00 44.43 3.33
3431 4267 7.496263 GGAGAGGAGACTTGGATTATAAACAAC 59.504 40.741 2.79 0.00 44.43 3.32
3432 4268 7.403231 AGGAGAGGAGACTTGGATTATAAACAA 59.597 37.037 6.00 6.00 44.43 2.83
3433 4269 6.903534 AGGAGAGGAGACTTGGATTATAAACA 59.096 38.462 0.00 0.00 44.43 2.83
3434 4270 7.368198 AGGAGAGGAGACTTGGATTATAAAC 57.632 40.000 0.00 0.00 44.43 2.01
3435 4271 7.996758 AAGGAGAGGAGACTTGGATTATAAA 57.003 36.000 0.00 0.00 44.43 1.40
3436 4272 7.996758 AAAGGAGAGGAGACTTGGATTATAA 57.003 36.000 0.00 0.00 44.43 0.98
3437 4273 7.996758 AAAAGGAGAGGAGACTTGGATTATA 57.003 36.000 0.00 0.00 44.43 0.98
3438 4274 6.899892 AAAAGGAGAGGAGACTTGGATTAT 57.100 37.500 0.00 0.00 44.43 1.28
3439 4275 6.960542 ACTAAAAGGAGAGGAGACTTGGATTA 59.039 38.462 0.00 0.00 44.43 1.75
3440 4276 5.788014 ACTAAAAGGAGAGGAGACTTGGATT 59.212 40.000 0.00 0.00 44.43 3.01
3441 4277 5.346270 ACTAAAAGGAGAGGAGACTTGGAT 58.654 41.667 0.00 0.00 44.43 3.41
3442 4278 4.753186 ACTAAAAGGAGAGGAGACTTGGA 58.247 43.478 0.00 0.00 44.43 3.53
3443 4279 5.491323 AACTAAAAGGAGAGGAGACTTGG 57.509 43.478 0.00 0.00 44.43 3.61
3444 4280 6.992715 TGAAAACTAAAAGGAGAGGAGACTTG 59.007 38.462 0.00 0.00 44.43 3.16
3445 4281 6.993308 GTGAAAACTAAAAGGAGAGGAGACTT 59.007 38.462 0.00 0.00 44.43 3.01
3447 4283 6.526526 AGTGAAAACTAAAAGGAGAGGAGAC 58.473 40.000 0.00 0.00 0.00 3.36
3448 4284 6.555360 AGAGTGAAAACTAAAAGGAGAGGAGA 59.445 38.462 0.00 0.00 0.00 3.71
3449 4285 6.764379 AGAGTGAAAACTAAAAGGAGAGGAG 58.236 40.000 0.00 0.00 0.00 3.69
3450 4286 6.555360 AGAGAGTGAAAACTAAAAGGAGAGGA 59.445 38.462 0.00 0.00 0.00 3.71
3451 4287 6.764379 AGAGAGTGAAAACTAAAAGGAGAGG 58.236 40.000 0.00 0.00 0.00 3.69
3452 4288 7.115663 CGAAGAGAGTGAAAACTAAAAGGAGAG 59.884 40.741 0.00 0.00 0.00 3.20
3453 4289 6.924060 CGAAGAGAGTGAAAACTAAAAGGAGA 59.076 38.462 0.00 0.00 0.00 3.71
3454 4290 6.146347 CCGAAGAGAGTGAAAACTAAAAGGAG 59.854 42.308 0.00 0.00 0.00 3.69
3455 4291 5.989777 CCGAAGAGAGTGAAAACTAAAAGGA 59.010 40.000 0.00 0.00 0.00 3.36
3456 4292 5.334182 GCCGAAGAGAGTGAAAACTAAAAGG 60.334 44.000 0.00 0.00 0.00 3.11
3457 4293 5.334182 GGCCGAAGAGAGTGAAAACTAAAAG 60.334 44.000 0.00 0.00 0.00 2.27
3458 4294 4.514066 GGCCGAAGAGAGTGAAAACTAAAA 59.486 41.667 0.00 0.00 0.00 1.52
3459 4295 4.062991 GGCCGAAGAGAGTGAAAACTAAA 58.937 43.478 0.00 0.00 0.00 1.85
3460 4296 3.070446 TGGCCGAAGAGAGTGAAAACTAA 59.930 43.478 0.00 0.00 0.00 2.24
3461 4297 2.631062 TGGCCGAAGAGAGTGAAAACTA 59.369 45.455 0.00 0.00 0.00 2.24
3462 4298 1.416401 TGGCCGAAGAGAGTGAAAACT 59.584 47.619 0.00 0.00 0.00 2.66
3463 4299 1.878953 TGGCCGAAGAGAGTGAAAAC 58.121 50.000 0.00 0.00 0.00 2.43
3464 4300 2.426522 CATGGCCGAAGAGAGTGAAAA 58.573 47.619 0.00 0.00 0.00 2.29
3465 4301 1.945819 GCATGGCCGAAGAGAGTGAAA 60.946 52.381 0.00 0.00 0.00 2.69
3466 4302 0.391661 GCATGGCCGAAGAGAGTGAA 60.392 55.000 0.00 0.00 0.00 3.18
3467 4303 1.219124 GCATGGCCGAAGAGAGTGA 59.781 57.895 0.00 0.00 0.00 3.41
3468 4304 1.078918 TGCATGGCCGAAGAGAGTG 60.079 57.895 0.00 0.00 0.00 3.51
3469 4305 1.078848 GTGCATGGCCGAAGAGAGT 60.079 57.895 0.00 0.00 0.00 3.24
3470 4306 1.817099 GGTGCATGGCCGAAGAGAG 60.817 63.158 0.00 0.00 0.00 3.20
3471 4307 2.123248 TTGGTGCATGGCCGAAGAGA 62.123 55.000 0.00 0.00 0.00 3.10
3472 4308 1.651240 CTTGGTGCATGGCCGAAGAG 61.651 60.000 0.00 0.00 0.00 2.85
3473 4309 1.675310 CTTGGTGCATGGCCGAAGA 60.675 57.895 0.00 0.00 0.00 2.87
3474 4310 2.879907 CTTGGTGCATGGCCGAAG 59.120 61.111 0.00 0.00 0.00 3.79
3475 4311 3.372730 GCTTGGTGCATGGCCGAA 61.373 61.111 0.00 0.00 42.31 4.30
3476 4312 4.349503 AGCTTGGTGCATGGCCGA 62.350 61.111 0.00 0.00 45.94 5.54
3477 4313 3.818787 GAGCTTGGTGCATGGCCG 61.819 66.667 0.00 0.00 45.94 6.13
3478 4314 2.012902 GATGAGCTTGGTGCATGGCC 62.013 60.000 0.00 0.00 45.94 5.36
3479 4315 1.035932 AGATGAGCTTGGTGCATGGC 61.036 55.000 0.00 0.00 45.94 4.40
3480 4316 1.022735 GAGATGAGCTTGGTGCATGG 58.977 55.000 0.00 0.00 45.94 3.66
3481 4317 1.022735 GGAGATGAGCTTGGTGCATG 58.977 55.000 0.00 0.00 45.94 4.06
3482 4318 0.622136 TGGAGATGAGCTTGGTGCAT 59.378 50.000 0.00 0.00 45.94 3.96
3483 4319 0.622136 ATGGAGATGAGCTTGGTGCA 59.378 50.000 0.00 0.00 45.94 4.57
3484 4320 1.022735 CATGGAGATGAGCTTGGTGC 58.977 55.000 0.00 0.00 43.29 5.01
3485 4321 2.704464 TCATGGAGATGAGCTTGGTG 57.296 50.000 0.00 0.00 33.40 4.17
3486 4322 3.327172 CCTATCATGGAGATGAGCTTGGT 59.673 47.826 0.00 0.00 42.01 3.67
3487 4323 3.581770 TCCTATCATGGAGATGAGCTTGG 59.418 47.826 0.00 0.00 42.01 3.61
3488 4324 4.886496 TCCTATCATGGAGATGAGCTTG 57.114 45.455 0.00 0.00 42.01 4.01
3498 4334 4.475919 TGATGGAGTCTCCTATCATGGA 57.524 45.455 19.82 0.00 37.46 3.41
3499 4335 5.303971 GTTTGATGGAGTCTCCTATCATGG 58.696 45.833 23.44 0.00 37.46 3.66
3500 4336 5.303971 GGTTTGATGGAGTCTCCTATCATG 58.696 45.833 23.44 0.00 37.46 3.07
3501 4337 4.349342 GGGTTTGATGGAGTCTCCTATCAT 59.651 45.833 23.44 10.68 37.46 2.45
3502 4338 3.711704 GGGTTTGATGGAGTCTCCTATCA 59.288 47.826 19.82 20.52 37.46 2.15
3503 4339 3.970640 AGGGTTTGATGGAGTCTCCTATC 59.029 47.826 19.82 18.55 37.46 2.08
3504 4340 3.970640 GAGGGTTTGATGGAGTCTCCTAT 59.029 47.826 19.82 11.30 37.46 2.57
3505 4341 3.012959 AGAGGGTTTGATGGAGTCTCCTA 59.987 47.826 19.82 6.94 37.46 2.94
3506 4342 2.192263 GAGGGTTTGATGGAGTCTCCT 58.808 52.381 19.82 5.55 37.46 3.69
3507 4343 2.169561 GAGAGGGTTTGATGGAGTCTCC 59.830 54.545 12.40 12.40 36.96 3.71
3508 4344 3.103742 AGAGAGGGTTTGATGGAGTCTC 58.896 50.000 0.00 0.00 0.00 3.36
3509 4345 3.197927 AGAGAGGGTTTGATGGAGTCT 57.802 47.619 0.00 0.00 0.00 3.24
3510 4346 3.517500 AGAAGAGAGGGTTTGATGGAGTC 59.482 47.826 0.00 0.00 0.00 3.36
3511 4347 3.517500 GAGAAGAGAGGGTTTGATGGAGT 59.482 47.826 0.00 0.00 0.00 3.85
3512 4348 3.774216 AGAGAAGAGAGGGTTTGATGGAG 59.226 47.826 0.00 0.00 0.00 3.86
3513 4349 3.796111 AGAGAAGAGAGGGTTTGATGGA 58.204 45.455 0.00 0.00 0.00 3.41
3514 4350 4.141824 GGTAGAGAAGAGAGGGTTTGATGG 60.142 50.000 0.00 0.00 0.00 3.51
3515 4351 4.714308 AGGTAGAGAAGAGAGGGTTTGATG 59.286 45.833 0.00 0.00 0.00 3.07
3516 4352 4.954089 AGGTAGAGAAGAGAGGGTTTGAT 58.046 43.478 0.00 0.00 0.00 2.57
3517 4353 4.405756 AGGTAGAGAAGAGAGGGTTTGA 57.594 45.455 0.00 0.00 0.00 2.69
3518 4354 4.528596 TGAAGGTAGAGAAGAGAGGGTTTG 59.471 45.833 0.00 0.00 0.00 2.93
3519 4355 4.528987 GTGAAGGTAGAGAAGAGAGGGTTT 59.471 45.833 0.00 0.00 0.00 3.27
3520 4356 4.090819 GTGAAGGTAGAGAAGAGAGGGTT 58.909 47.826 0.00 0.00 0.00 4.11
3521 4357 3.335484 AGTGAAGGTAGAGAAGAGAGGGT 59.665 47.826 0.00 0.00 0.00 4.34
3522 4358 3.951680 GAGTGAAGGTAGAGAAGAGAGGG 59.048 52.174 0.00 0.00 0.00 4.30
3523 4359 4.594970 TGAGTGAAGGTAGAGAAGAGAGG 58.405 47.826 0.00 0.00 0.00 3.69
3524 4360 6.376864 TGAATGAGTGAAGGTAGAGAAGAGAG 59.623 42.308 0.00 0.00 0.00 3.20
3525 4361 6.249192 TGAATGAGTGAAGGTAGAGAAGAGA 58.751 40.000 0.00 0.00 0.00 3.10
3526 4362 6.522625 TGAATGAGTGAAGGTAGAGAAGAG 57.477 41.667 0.00 0.00 0.00 2.85
3527 4363 6.629068 GCATGAATGAGTGAAGGTAGAGAAGA 60.629 42.308 0.00 0.00 0.00 2.87
3528 4364 5.523188 GCATGAATGAGTGAAGGTAGAGAAG 59.477 44.000 0.00 0.00 0.00 2.85
3529 4365 5.188555 AGCATGAATGAGTGAAGGTAGAGAA 59.811 40.000 0.00 0.00 0.00 2.87
3530 4366 4.713814 AGCATGAATGAGTGAAGGTAGAGA 59.286 41.667 0.00 0.00 0.00 3.10
3531 4367 4.809958 CAGCATGAATGAGTGAAGGTAGAG 59.190 45.833 0.00 0.00 39.69 2.43
3532 4368 4.467438 TCAGCATGAATGAGTGAAGGTAGA 59.533 41.667 0.00 0.00 45.97 2.59
3533 4369 4.763073 TCAGCATGAATGAGTGAAGGTAG 58.237 43.478 0.00 0.00 45.97 3.18
3534 4370 4.824479 TCAGCATGAATGAGTGAAGGTA 57.176 40.909 0.00 0.00 45.97 3.08
3535 4371 3.708403 TCAGCATGAATGAGTGAAGGT 57.292 42.857 0.00 0.00 45.97 3.50
3547 4383 4.451150 GCGGTCCCGTCAGCATGA 62.451 66.667 7.66 0.00 41.08 3.07
3548 4384 4.758251 TGCGGTCCCGTCAGCATG 62.758 66.667 7.66 0.00 42.09 4.06
3549 4385 4.457496 CTGCGGTCCCGTCAGCAT 62.457 66.667 14.14 0.00 42.09 3.79
3552 4388 4.680237 TTGCTGCGGTCCCGTCAG 62.680 66.667 19.17 19.17 42.16 3.51
3553 4389 4.980805 GTTGCTGCGGTCCCGTCA 62.981 66.667 7.66 5.27 42.09 4.35
3557 4393 4.643387 ACAGGTTGCTGCGGTCCC 62.643 66.667 0.00 0.00 0.00 4.46
3558 4394 3.050275 GACAGGTTGCTGCGGTCC 61.050 66.667 0.00 0.00 0.00 4.46
3559 4395 3.414700 CGACAGGTTGCTGCGGTC 61.415 66.667 0.00 0.00 0.00 4.79
3563 4399 3.579626 GAACGCGACAGGTTGCTGC 62.580 63.158 15.93 0.00 37.83 5.25
3564 4400 2.551270 GAACGCGACAGGTTGCTG 59.449 61.111 15.93 6.13 37.83 4.41
3565 4401 3.036084 CGAACGCGACAGGTTGCT 61.036 61.111 15.93 0.00 40.82 3.91
3566 4402 3.033764 TCGAACGCGACAGGTTGC 61.034 61.111 15.93 1.42 42.51 4.17
3577 4413 1.876714 CTATGGCGTGGGTCGAACG 60.877 63.158 3.80 3.80 43.81 3.95
3578 4414 1.082117 CACTATGGCGTGGGTCGAAC 61.082 60.000 0.00 0.00 42.86 3.95
3579 4415 1.216977 CACTATGGCGTGGGTCGAA 59.783 57.895 0.00 0.00 42.86 3.71
3580 4416 1.663379 CTCACTATGGCGTGGGTCGA 61.663 60.000 0.00 0.00 42.86 4.20
3581 4417 1.226974 CTCACTATGGCGTGGGTCG 60.227 63.158 0.00 0.00 43.12 4.79
3582 4418 1.521681 GCTCACTATGGCGTGGGTC 60.522 63.158 0.00 0.00 37.69 4.46
3583 4419 1.626356 ATGCTCACTATGGCGTGGGT 61.626 55.000 0.00 0.00 37.69 4.51
3584 4420 0.882042 GATGCTCACTATGGCGTGGG 60.882 60.000 0.00 0.00 38.42 4.61
3585 4421 0.882042 GGATGCTCACTATGGCGTGG 60.882 60.000 0.00 0.00 35.63 4.94
3586 4422 1.217585 CGGATGCTCACTATGGCGTG 61.218 60.000 0.00 0.00 36.25 5.34
3587 4423 1.068083 CGGATGCTCACTATGGCGT 59.932 57.895 0.00 0.00 0.00 5.68
3588 4424 0.941463 GTCGGATGCTCACTATGGCG 60.941 60.000 0.00 0.00 0.00 5.69
3589 4425 0.601311 GGTCGGATGCTCACTATGGC 60.601 60.000 0.00 0.00 0.00 4.40
3590 4426 0.752658 TGGTCGGATGCTCACTATGG 59.247 55.000 0.00 0.00 0.00 2.74
3591 4427 2.827800 ATGGTCGGATGCTCACTATG 57.172 50.000 0.00 0.00 0.00 2.23
3592 4428 3.845781 AAATGGTCGGATGCTCACTAT 57.154 42.857 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.