Multiple sequence alignment - TraesCS1D01G033700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G033700 chr1D 100.000 6781 0 0 1 6781 13803577 13796797 0.000000e+00 12523.0
1 TraesCS1D01G033700 chr1D 92.202 3565 230 33 2564 6104 13705346 13701806 0.000000e+00 5000.0
2 TraesCS1D01G033700 chr1D 91.184 2779 207 13 1 2757 13707505 13704743 0.000000e+00 3740.0
3 TraesCS1D01G033700 chr1D 92.308 507 34 3 6103 6606 13701761 13701257 0.000000e+00 715.0
4 TraesCS1D01G033700 chr1D 86.667 600 78 2 2149 2746 13801014 13800415 0.000000e+00 664.0
5 TraesCS1D01G033700 chr1D 86.667 600 78 2 2564 3163 13801429 13800832 0.000000e+00 664.0
6 TraesCS1D01G033700 chr1B 90.692 3556 245 45 2564 6104 20571835 20575319 0.000000e+00 4654.0
7 TraesCS1D01G033700 chr1B 91.117 2139 171 4 1 2138 20569664 20571784 0.000000e+00 2880.0
8 TraesCS1D01G033700 chr1B 92.772 1771 106 9 4337 6104 20016705 20014954 0.000000e+00 2542.0
9 TraesCS1D01G033700 chr1B 92.795 1374 85 13 1 1370 20037372 20036009 0.000000e+00 1977.0
10 TraesCS1D01G033700 chr1B 86.485 1798 191 22 4999 6781 19340380 19338620 0.000000e+00 1927.0
11 TraesCS1D01G033700 chr1B 91.131 1308 90 12 3486 4781 19380085 19378792 0.000000e+00 1749.0
12 TraesCS1D01G033700 chr1B 91.055 1308 91 12 3486 4781 19479012 19477719 0.000000e+00 1744.0
13 TraesCS1D01G033700 chr1B 91.021 1303 91 10 3486 4776 19552092 19550804 0.000000e+00 1735.0
14 TraesCS1D01G033700 chr1B 91.100 1191 81 11 3486 4664 19343339 19342162 0.000000e+00 1589.0
15 TraesCS1D01G033700 chr1B 90.932 1191 83 11 3486 4664 19442077 19440900 0.000000e+00 1578.0
16 TraesCS1D01G033700 chr1B 89.341 1107 87 4 4999 6104 19537746 19536670 0.000000e+00 1362.0
17 TraesCS1D01G033700 chr1B 89.160 1107 89 4 4999 6104 19439110 19438034 0.000000e+00 1351.0
18 TraesCS1D01G033700 chr1B 87.511 1113 116 12 158 1267 19913938 19912846 0.000000e+00 1264.0
19 TraesCS1D01G033700 chr1B 89.760 918 91 3 352 1267 19808668 19807752 0.000000e+00 1171.0
20 TraesCS1D01G033700 chr1B 89.457 920 91 5 352 1267 19688575 19687658 0.000000e+00 1157.0
21 TraesCS1D01G033700 chr1B 89.239 920 93 5 352 1267 19588235 19587318 0.000000e+00 1146.0
22 TraesCS1D01G033700 chr1B 89.186 823 68 2 1424 2226 19553510 19552689 0.000000e+00 1007.0
23 TraesCS1D01G033700 chr1B 91.719 640 50 2 6103 6742 20575362 20575998 0.000000e+00 885.0
24 TraesCS1D01G033700 chr1B 91.207 580 43 5 648 1224 19554079 19553505 0.000000e+00 782.0
25 TraesCS1D01G033700 chr1B 91.142 508 39 3 6103 6606 20014910 20014405 0.000000e+00 684.0
26 TraesCS1D01G033700 chr1B 83.644 697 95 16 6098 6781 19437993 19437303 7.420000e-179 638.0
27 TraesCS1D01G033700 chr1B 83.381 698 96 16 6098 6781 19536629 19535938 4.460000e-176 628.0
28 TraesCS1D01G033700 chr1B 83.556 675 96 15 6116 6781 19374041 19373373 9.660000e-173 617.0
29 TraesCS1D01G033700 chr1B 83.211 679 95 14 6116 6781 19472963 19472291 7.520000e-169 604.0
30 TraesCS1D01G033700 chr1B 87.033 509 63 3 2629 3137 20017211 20016706 7.630000e-159 571.0
31 TraesCS1D01G033700 chr1B 83.527 601 72 9 2719 3310 19552677 19552095 2.780000e-148 536.0
32 TraesCS1D01G033700 chr1B 92.920 339 24 0 1631 1969 20017735 20017397 1.700000e-135 494.0
33 TraesCS1D01G033700 chr1B 82.582 488 64 8 158 643 19554635 19554167 1.760000e-110 411.0
34 TraesCS1D01G033700 chr1B 94.332 247 12 2 4763 5008 19475450 19475205 1.790000e-100 377.0
35 TraesCS1D01G033700 chr1B 93.927 247 13 2 4763 5008 19539953 19539708 8.310000e-99 372.0
36 TraesCS1D01G033700 chr1B 93.522 247 14 2 4763 5008 19376523 19376278 3.860000e-97 366.0
37 TraesCS1D01G033700 chr1B 89.091 220 20 4 4999 5216 19374309 19374092 3.120000e-68 270.0
38 TraesCS1D01G033700 chr1B 89.091 220 21 3 4999 5216 19473232 19473014 3.120000e-68 270.0
39 TraesCS1D01G033700 chr1B 92.958 142 10 0 1997 2138 20017401 20017260 2.480000e-49 207.0
40 TraesCS1D01G033700 chr1B 83.186 226 28 6 3094 3310 19380312 19380088 1.490000e-46 198.0
41 TraesCS1D01G033700 chr1B 90.217 92 7 2 1367 1458 20017821 20017732 1.190000e-22 119.0
42 TraesCS1D01G033700 chr1B 96.552 58 2 0 5232 5289 19374103 19374046 5.600000e-16 97.1
43 TraesCS1D01G033700 chr1B 96.552 58 2 0 5232 5289 19473025 19472968 5.600000e-16 97.1
44 TraesCS1D01G033700 chr1A 92.513 3152 205 19 2974 6104 14747069 14743928 0.000000e+00 4484.0
45 TraesCS1D01G033700 chr1A 91.659 2254 171 12 273 2513 14749317 14747068 0.000000e+00 3105.0
46 TraesCS1D01G033700 chr1A 91.781 365 29 1 2564 2928 14747431 14747068 2.180000e-139 507.0
47 TraesCS1D01G033700 chr1A 96.172 209 6 1 6098 6304 14743887 14743679 2.340000e-89 340.0
48 TraesCS1D01G033700 chr1A 83.041 171 27 2 1467 1636 94129715 94129546 3.270000e-33 154.0
49 TraesCS1D01G033700 chr6D 85.870 368 51 1 2796 3163 304306072 304305706 2.290000e-104 390.0
50 TraesCS1D01G033700 chr6D 84.496 387 57 2 2374 2758 304306079 304305694 4.960000e-101 379.0
51 TraesCS1D01G033700 chr7A 84.143 391 58 3 2374 2762 287215645 287216033 6.420000e-100 375.0
52 TraesCS1D01G033700 chr7A 84.804 204 27 3 2160 2361 347110311 347110110 1.150000e-47 202.0
53 TraesCS1D01G033700 chr2D 84.103 390 59 3 2790 3179 157007336 157007722 2.310000e-99 374.0
54 TraesCS1D01G033700 chr2D 82.097 391 65 4 2374 2762 157007335 157007722 5.070000e-86 329.0
55 TraesCS1D01G033700 chr2D 84.393 173 22 4 1470 1639 639533860 639533690 1.510000e-36 165.0
56 TraesCS1D01G033700 chr3A 83.929 392 57 4 2374 2762 603817510 603817898 2.990000e-98 370.0
57 TraesCS1D01G033700 chr7D 83.120 391 62 4 2374 2762 3649885 3649497 3.010000e-93 353.0
58 TraesCS1D01G033700 chr7D 83.436 163 25 2 1474 1635 571008941 571008780 4.240000e-32 150.0
59 TraesCS1D01G033700 chr2A 83.288 371 57 4 2796 3163 622189247 622189615 3.030000e-88 337.0
60 TraesCS1D01G033700 chr6B 83.182 220 33 4 2139 2357 25268143 25268359 1.490000e-46 198.0
61 TraesCS1D01G033700 chr6A 86.301 146 20 0 1490 1635 6922745 6922890 7.040000e-35 159.0
62 TraesCS1D01G033700 chr3D 84.049 163 24 2 1474 1635 613774420 613774259 9.110000e-34 156.0
63 TraesCS1D01G033700 chr2B 82.482 137 16 6 6369 6498 233255019 233255154 5.560000e-21 113.0
64 TraesCS1D01G033700 chr2B 89.583 48 5 0 3116 3163 331030501 331030454 2.040000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G033700 chr1D 13796797 13803577 6780 True 4617.000000 12523 91.111333 1 6781 3 chr1D.!!$R2 6780
1 TraesCS1D01G033700 chr1D 13701257 13707505 6248 True 3151.666667 5000 91.898000 1 6606 3 chr1D.!!$R1 6605
2 TraesCS1D01G033700 chr1B 20569664 20575998 6334 False 2806.333333 4654 91.176000 1 6742 3 chr1B.!!$F1 6741
3 TraesCS1D01G033700 chr1B 20036009 20037372 1363 True 1977.000000 1977 92.795000 1 1370 1 chr1B.!!$R5 1369
4 TraesCS1D01G033700 chr1B 19338620 19343339 4719 True 1758.000000 1927 88.792500 3486 6781 2 chr1B.!!$R6 3295
5 TraesCS1D01G033700 chr1B 19912846 19913938 1092 True 1264.000000 1264 87.511000 158 1267 1 chr1B.!!$R4 1109
6 TraesCS1D01G033700 chr1B 19437303 19442077 4774 True 1189.000000 1578 87.912000 3486 6781 3 chr1B.!!$R8 3295
7 TraesCS1D01G033700 chr1B 19807752 19808668 916 True 1171.000000 1171 89.760000 352 1267 1 chr1B.!!$R3 915
8 TraesCS1D01G033700 chr1B 19687658 19688575 917 True 1157.000000 1157 89.457000 352 1267 1 chr1B.!!$R2 915
9 TraesCS1D01G033700 chr1B 19587318 19588235 917 True 1146.000000 1146 89.239000 352 1267 1 chr1B.!!$R1 915
10 TraesCS1D01G033700 chr1B 19550804 19554635 3831 True 894.200000 1735 87.504600 158 4776 5 chr1B.!!$R11 4618
11 TraesCS1D01G033700 chr1B 19535938 19539953 4015 True 787.333333 1362 88.883000 4763 6781 3 chr1B.!!$R10 2018
12 TraesCS1D01G033700 chr1B 20014405 20017821 3416 True 769.500000 2542 91.173667 1367 6606 6 chr1B.!!$R12 5239
13 TraesCS1D01G033700 chr1B 19472291 19479012 6721 True 618.420000 1744 90.848200 3486 6781 5 chr1B.!!$R9 3295
14 TraesCS1D01G033700 chr1B 19373373 19380312 6939 True 549.516667 1749 89.506333 3094 6781 6 chr1B.!!$R7 3687
15 TraesCS1D01G033700 chr1A 14743679 14749317 5638 True 2109.000000 4484 93.031250 273 6304 4 chr1A.!!$R2 6031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 641 2.048023 CATGGCGGTGGCACAGAAT 61.048 57.895 22.02 10.83 41.80 2.40 F
2431 2571 0.036105 AATGGAGTGTCTGATGCGCA 60.036 50.000 14.96 14.96 0.00 6.09 F
2468 2608 0.105709 TATGCCGATGGACTGGGAGA 60.106 55.000 0.00 0.00 0.00 3.71 F
2740 2880 0.106369 AGTATGTCGATGGACCGGGA 60.106 55.000 6.32 0.00 42.73 5.14 F
3857 4024 0.162933 TTCGCACTTTCATTCGTCGC 59.837 50.000 0.00 0.00 0.00 5.19 F
5138 9590 0.478072 ACCACTCAAATGTCCTGCCA 59.522 50.000 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2587 2727 0.033796 TCCTCCCGTATCCGAGTTGT 60.034 55.000 0.00 0.00 35.63 3.32 R
4352 4527 0.106335 TTGAAAGTTCCGCGGGTACA 59.894 50.000 27.83 14.03 0.00 2.90 R
4434 4609 2.428890 TGGTGACAAAAAGATTGGCGTT 59.571 40.909 0.00 0.00 37.44 4.84 R
4671 4847 3.091545 ACCTGCATTGGGTTGACATTAG 58.908 45.455 0.00 0.00 32.46 1.73 R
5719 10177 0.110486 AGTTGATTGGAAGGTGCCGT 59.890 50.000 0.00 0.00 0.00 5.68 R
6537 11063 0.104144 TCCCTCCCAACTTCCTCCAA 60.104 55.000 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 99 7.281841 ACTTGGTTGAAACATGGAAATTTCAT 58.718 30.769 19.49 8.56 42.72 2.57
473 475 3.884774 TTGGGAGTGCTTGCCGGT 61.885 61.111 1.90 0.00 40.91 5.28
631 641 2.048023 CATGGCGGTGGCACAGAAT 61.048 57.895 22.02 10.83 41.80 2.40
747 840 5.126067 GTGAGGCTTGCATAGGAAGAAATA 58.874 41.667 2.32 0.00 0.00 1.40
808 902 5.244402 TGTGATTTCTGTGCAATTTCTCCAT 59.756 36.000 0.00 0.00 0.00 3.41
875 969 7.067494 AGCCTGCAATTTTAGAAGTTGTATAGG 59.933 37.037 0.00 0.00 0.00 2.57
930 1024 4.819088 TCAGAACTAGATGTGATCTCTCCG 59.181 45.833 0.00 0.00 40.76 4.63
1018 1114 8.383318 AGTATCAATGGATAACAATACTGTGC 57.617 34.615 0.00 0.00 37.73 4.57
1032 1128 1.148157 CTGTGCGCGGAAGTAGGATG 61.148 60.000 8.83 0.00 0.00 3.51
1188 1284 0.874175 TTGCGATTACGGCGGATGAG 60.874 55.000 13.24 0.15 40.15 2.90
1229 1325 4.660938 GGACAAGGCTGGCGGGTT 62.661 66.667 0.00 0.00 0.00 4.11
1273 1369 1.004560 CTGCTTGCCTCCTTCGACA 60.005 57.895 0.00 0.00 0.00 4.35
1516 1612 2.373169 ACCTCCTCTTTGCACATGAGAA 59.627 45.455 0.00 0.00 0.00 2.87
1588 1688 9.498176 GGTCTGATTAACTCTTACCTTTTTACA 57.502 33.333 0.00 0.00 0.00 2.41
1615 1715 6.096564 CGTATGTAAAAGGAGGAGGTAAGAGT 59.903 42.308 0.00 0.00 0.00 3.24
1618 1718 6.023603 TGTAAAAGGAGGAGGTAAGAGTGAT 58.976 40.000 0.00 0.00 0.00 3.06
1657 1757 8.426489 TGCCTACGGTTTATAGAATCTAACATT 58.574 33.333 0.00 0.00 0.00 2.71
1853 1953 2.431942 CTTCCACGGGTTCGACGG 60.432 66.667 0.00 0.00 40.11 4.79
1897 1997 4.382320 GCGGCACCGGTTCTACCA 62.382 66.667 2.97 0.00 38.47 3.25
1913 2013 3.899980 TCTACCATGGAGATGATCACCTG 59.100 47.826 21.47 6.06 0.00 4.00
1917 2017 1.870064 TGGAGATGATCACCTGCAGA 58.130 50.000 17.39 0.00 0.00 4.26
2039 2139 3.192844 GTCTCGTCACCTTGTGAATAGGA 59.807 47.826 0.00 0.00 44.49 2.94
2114 2214 3.510360 TCTTAGCACACTCTCCTAACCAC 59.490 47.826 0.00 0.00 0.00 4.16
2240 2380 0.541998 TTCACTCTCCTCAAGCCGGA 60.542 55.000 5.05 0.00 0.00 5.14
2261 2401 3.821033 GACTTTTGTGATGTAGTGGGCTT 59.179 43.478 0.00 0.00 0.00 4.35
2354 2494 0.537371 GGGCTGCTAACAAGTGGTGT 60.537 55.000 0.00 0.00 44.64 4.16
2355 2495 0.875059 GGCTGCTAACAAGTGGTGTC 59.125 55.000 0.00 0.00 40.60 3.67
2356 2496 1.593196 GCTGCTAACAAGTGGTGTCA 58.407 50.000 0.00 0.00 40.60 3.58
2357 2497 1.946768 GCTGCTAACAAGTGGTGTCAA 59.053 47.619 0.00 0.00 40.60 3.18
2358 2498 2.357637 GCTGCTAACAAGTGGTGTCAAA 59.642 45.455 0.00 0.00 40.60 2.69
2359 2499 3.548818 GCTGCTAACAAGTGGTGTCAAAG 60.549 47.826 0.00 0.00 40.60 2.77
2360 2500 2.357637 TGCTAACAAGTGGTGTCAAAGC 59.642 45.455 0.00 0.00 40.60 3.51
2361 2501 2.287608 GCTAACAAGTGGTGTCAAAGCC 60.288 50.000 0.00 0.00 40.60 4.35
2362 2502 0.738389 AACAAGTGGTGTCAAAGCCG 59.262 50.000 0.00 0.00 40.60 5.52
2363 2503 0.393808 ACAAGTGGTGTCAAAGCCGT 60.394 50.000 0.00 0.00 34.38 5.68
2364 2504 0.738389 CAAGTGGTGTCAAAGCCGTT 59.262 50.000 0.00 0.00 0.00 4.44
2365 2505 1.021968 AAGTGGTGTCAAAGCCGTTC 58.978 50.000 0.00 0.00 0.00 3.95
2366 2506 0.818040 AGTGGTGTCAAAGCCGTTCC 60.818 55.000 0.00 0.00 0.00 3.62
2367 2507 0.818040 GTGGTGTCAAAGCCGTTCCT 60.818 55.000 0.00 0.00 0.00 3.36
2368 2508 0.759959 TGGTGTCAAAGCCGTTCCTA 59.240 50.000 0.00 0.00 0.00 2.94
2369 2509 1.270625 TGGTGTCAAAGCCGTTCCTAG 60.271 52.381 0.00 0.00 0.00 3.02
2370 2510 0.796927 GTGTCAAAGCCGTTCCTAGC 59.203 55.000 0.00 0.00 0.00 3.42
2371 2511 0.321298 TGTCAAAGCCGTTCCTAGCC 60.321 55.000 0.00 0.00 0.00 3.93
2372 2512 1.025113 GTCAAAGCCGTTCCTAGCCC 61.025 60.000 0.00 0.00 0.00 5.19
2373 2513 1.749258 CAAAGCCGTTCCTAGCCCC 60.749 63.158 0.00 0.00 0.00 5.80
2374 2514 2.228480 AAAGCCGTTCCTAGCCCCA 61.228 57.895 0.00 0.00 0.00 4.96
2375 2515 2.198304 AAAGCCGTTCCTAGCCCCAG 62.198 60.000 0.00 0.00 0.00 4.45
2376 2516 4.176752 GCCGTTCCTAGCCCCAGG 62.177 72.222 0.00 0.00 37.00 4.45
2386 2526 2.361737 GCCCCAGGCCAGTCTTTC 60.362 66.667 5.01 0.00 44.06 2.62
2387 2527 2.045926 CCCCAGGCCAGTCTTTCG 60.046 66.667 5.01 0.00 0.00 3.46
2388 2528 2.045926 CCCAGGCCAGTCTTTCGG 60.046 66.667 5.01 0.00 0.00 4.30
2389 2529 2.045926 CCAGGCCAGTCTTTCGGG 60.046 66.667 5.01 0.00 34.52 5.14
2390 2530 2.045926 CAGGCCAGTCTTTCGGGG 60.046 66.667 5.01 0.00 32.04 5.73
2391 2531 2.529389 AGGCCAGTCTTTCGGGGT 60.529 61.111 5.01 0.00 32.04 4.95
2392 2532 2.359975 GGCCAGTCTTTCGGGGTG 60.360 66.667 0.00 0.00 32.04 4.61
2393 2533 2.430367 GCCAGTCTTTCGGGGTGT 59.570 61.111 0.00 0.00 32.04 4.16
2394 2534 1.675219 GCCAGTCTTTCGGGGTGTA 59.325 57.895 0.00 0.00 32.04 2.90
2395 2535 0.391263 GCCAGTCTTTCGGGGTGTAG 60.391 60.000 0.00 0.00 32.04 2.74
2396 2536 0.974383 CCAGTCTTTCGGGGTGTAGT 59.026 55.000 0.00 0.00 0.00 2.73
2397 2537 1.337823 CCAGTCTTTCGGGGTGTAGTG 60.338 57.143 0.00 0.00 0.00 2.74
2398 2538 0.974383 AGTCTTTCGGGGTGTAGTGG 59.026 55.000 0.00 0.00 0.00 4.00
2399 2539 0.036671 GTCTTTCGGGGTGTAGTGGG 60.037 60.000 0.00 0.00 0.00 4.61
2400 2540 0.472352 TCTTTCGGGGTGTAGTGGGT 60.472 55.000 0.00 0.00 0.00 4.51
2401 2541 0.399075 CTTTCGGGGTGTAGTGGGTT 59.601 55.000 0.00 0.00 0.00 4.11
2402 2542 0.397564 TTTCGGGGTGTAGTGGGTTC 59.602 55.000 0.00 0.00 0.00 3.62
2403 2543 0.472352 TTCGGGGTGTAGTGGGTTCT 60.472 55.000 0.00 0.00 0.00 3.01
2404 2544 0.901580 TCGGGGTGTAGTGGGTTCTC 60.902 60.000 0.00 0.00 0.00 2.87
2405 2545 0.903454 CGGGGTGTAGTGGGTTCTCT 60.903 60.000 0.00 0.00 0.00 3.10
2406 2546 0.613777 GGGGTGTAGTGGGTTCTCTG 59.386 60.000 0.00 0.00 0.00 3.35
2407 2547 0.036294 GGGTGTAGTGGGTTCTCTGC 60.036 60.000 0.00 0.00 0.00 4.26
2408 2548 0.977395 GGTGTAGTGGGTTCTCTGCT 59.023 55.000 0.00 0.00 0.00 4.24
2409 2549 2.176889 GGTGTAGTGGGTTCTCTGCTA 58.823 52.381 0.00 0.00 0.00 3.49
2410 2550 2.166664 GGTGTAGTGGGTTCTCTGCTAG 59.833 54.545 0.00 0.00 0.00 3.42
2411 2551 2.826725 GTGTAGTGGGTTCTCTGCTAGT 59.173 50.000 0.00 0.00 0.00 2.57
2412 2552 4.015084 GTGTAGTGGGTTCTCTGCTAGTA 58.985 47.826 0.00 0.00 0.00 1.82
2413 2553 4.461781 GTGTAGTGGGTTCTCTGCTAGTAA 59.538 45.833 0.00 0.00 0.00 2.24
2414 2554 5.127356 GTGTAGTGGGTTCTCTGCTAGTAAT 59.873 44.000 0.00 0.00 0.00 1.89
2415 2555 4.744795 AGTGGGTTCTCTGCTAGTAATG 57.255 45.455 0.00 0.00 0.00 1.90
2416 2556 3.452627 AGTGGGTTCTCTGCTAGTAATGG 59.547 47.826 0.00 0.00 0.00 3.16
2417 2557 3.451178 GTGGGTTCTCTGCTAGTAATGGA 59.549 47.826 0.00 0.00 0.00 3.41
2418 2558 3.706594 TGGGTTCTCTGCTAGTAATGGAG 59.293 47.826 0.00 0.00 0.00 3.86
2419 2559 3.707102 GGGTTCTCTGCTAGTAATGGAGT 59.293 47.826 0.00 0.00 0.00 3.85
2420 2560 4.442192 GGGTTCTCTGCTAGTAATGGAGTG 60.442 50.000 0.00 0.00 0.00 3.51
2421 2561 4.160626 GGTTCTCTGCTAGTAATGGAGTGT 59.839 45.833 0.00 0.00 0.00 3.55
2422 2562 5.344884 GTTCTCTGCTAGTAATGGAGTGTC 58.655 45.833 0.00 0.00 0.00 3.67
2423 2563 4.861196 TCTCTGCTAGTAATGGAGTGTCT 58.139 43.478 0.00 0.00 0.00 3.41
2424 2564 4.642437 TCTCTGCTAGTAATGGAGTGTCTG 59.358 45.833 0.00 0.00 0.00 3.51
2425 2565 4.600062 TCTGCTAGTAATGGAGTGTCTGA 58.400 43.478 0.00 0.00 0.00 3.27
2426 2566 5.204292 TCTGCTAGTAATGGAGTGTCTGAT 58.796 41.667 0.00 0.00 0.00 2.90
2427 2567 5.068329 TCTGCTAGTAATGGAGTGTCTGATG 59.932 44.000 0.00 0.00 0.00 3.07
2428 2568 4.054671 GCTAGTAATGGAGTGTCTGATGC 58.945 47.826 0.00 0.00 0.00 3.91
2429 2569 3.170791 AGTAATGGAGTGTCTGATGCG 57.829 47.619 0.00 0.00 0.00 4.73
2430 2570 1.594862 GTAATGGAGTGTCTGATGCGC 59.405 52.381 0.00 0.00 0.00 6.09
2431 2571 0.036105 AATGGAGTGTCTGATGCGCA 60.036 50.000 14.96 14.96 0.00 6.09
2432 2572 0.742281 ATGGAGTGTCTGATGCGCAC 60.742 55.000 14.90 7.75 0.00 5.34
2433 2573 2.103042 GGAGTGTCTGATGCGCACC 61.103 63.158 14.90 1.73 33.96 5.01
2434 2574 2.433145 AGTGTCTGATGCGCACCG 60.433 61.111 14.90 3.76 33.96 4.94
2435 2575 2.432456 GTGTCTGATGCGCACCGA 60.432 61.111 14.90 6.63 0.00 4.69
2436 2576 2.027073 GTGTCTGATGCGCACCGAA 61.027 57.895 14.90 0.00 0.00 4.30
2437 2577 1.301322 TGTCTGATGCGCACCGAAA 60.301 52.632 14.90 0.94 0.00 3.46
2438 2578 0.882484 TGTCTGATGCGCACCGAAAA 60.882 50.000 14.90 0.00 0.00 2.29
2439 2579 0.447801 GTCTGATGCGCACCGAAAAT 59.552 50.000 14.90 0.00 0.00 1.82
2440 2580 0.447406 TCTGATGCGCACCGAAAATG 59.553 50.000 14.90 0.00 0.00 2.32
2441 2581 0.168788 CTGATGCGCACCGAAAATGT 59.831 50.000 14.90 0.00 0.00 2.71
2442 2582 0.167908 TGATGCGCACCGAAAATGTC 59.832 50.000 14.90 3.03 0.00 3.06
2443 2583 0.447801 GATGCGCACCGAAAATGTCT 59.552 50.000 14.90 0.00 0.00 3.41
2444 2584 0.168788 ATGCGCACCGAAAATGTCTG 59.831 50.000 14.90 0.00 0.00 3.51
2445 2585 0.882484 TGCGCACCGAAAATGTCTGA 60.882 50.000 5.66 0.00 0.00 3.27
2446 2586 0.237235 GCGCACCGAAAATGTCTGAA 59.763 50.000 0.30 0.00 0.00 3.02
2447 2587 1.950472 CGCACCGAAAATGTCTGAAC 58.050 50.000 0.00 0.00 0.00 3.18
2448 2588 1.262950 CGCACCGAAAATGTCTGAACA 59.737 47.619 0.00 0.00 40.38 3.18
2450 2590 3.124466 CGCACCGAAAATGTCTGAACATA 59.876 43.478 0.00 0.00 45.48 2.29
2451 2591 4.201812 CGCACCGAAAATGTCTGAACATAT 60.202 41.667 0.00 0.00 45.48 1.78
2452 2592 5.030295 GCACCGAAAATGTCTGAACATATG 58.970 41.667 0.00 0.00 45.48 1.78
2453 2593 5.030295 CACCGAAAATGTCTGAACATATGC 58.970 41.667 1.58 0.00 45.48 3.14
2454 2594 4.096382 ACCGAAAATGTCTGAACATATGCC 59.904 41.667 1.58 0.00 45.48 4.40
2455 2595 4.274069 CGAAAATGTCTGAACATATGCCG 58.726 43.478 1.58 0.00 45.48 5.69
2456 2596 4.033932 CGAAAATGTCTGAACATATGCCGA 59.966 41.667 1.58 0.00 45.48 5.54
2457 2597 5.277490 CGAAAATGTCTGAACATATGCCGAT 60.277 40.000 1.58 0.00 45.48 4.18
2458 2598 5.428496 AAATGTCTGAACATATGCCGATG 57.572 39.130 1.58 0.00 45.48 3.84
2459 2599 2.837498 TGTCTGAACATATGCCGATGG 58.163 47.619 1.58 0.00 0.00 3.51
2460 2600 2.433970 TGTCTGAACATATGCCGATGGA 59.566 45.455 1.58 0.00 0.00 3.41
2461 2601 2.802816 GTCTGAACATATGCCGATGGAC 59.197 50.000 1.58 1.07 0.00 4.02
2462 2602 2.700371 TCTGAACATATGCCGATGGACT 59.300 45.455 1.58 0.00 0.00 3.85
2463 2603 2.804527 CTGAACATATGCCGATGGACTG 59.195 50.000 1.58 0.00 0.00 3.51
2464 2604 2.146342 GAACATATGCCGATGGACTGG 58.854 52.381 1.58 0.00 0.00 4.00
2465 2605 0.397941 ACATATGCCGATGGACTGGG 59.602 55.000 1.58 0.00 0.00 4.45
2466 2606 0.686789 CATATGCCGATGGACTGGGA 59.313 55.000 0.00 0.00 0.00 4.37
2467 2607 0.979665 ATATGCCGATGGACTGGGAG 59.020 55.000 0.00 0.00 0.00 4.30
2468 2608 0.105709 TATGCCGATGGACTGGGAGA 60.106 55.000 0.00 0.00 0.00 3.71
2469 2609 0.765903 ATGCCGATGGACTGGGAGAT 60.766 55.000 0.00 0.00 0.00 2.75
2470 2610 0.105709 TGCCGATGGACTGGGAGATA 60.106 55.000 0.00 0.00 0.00 1.98
2471 2611 1.048601 GCCGATGGACTGGGAGATAA 58.951 55.000 0.00 0.00 0.00 1.75
2472 2612 1.001406 GCCGATGGACTGGGAGATAAG 59.999 57.143 0.00 0.00 0.00 1.73
2473 2613 1.001406 CCGATGGACTGGGAGATAAGC 59.999 57.143 0.00 0.00 0.00 3.09
2474 2614 1.688735 CGATGGACTGGGAGATAAGCA 59.311 52.381 0.00 0.00 0.00 3.91
2475 2615 2.301296 CGATGGACTGGGAGATAAGCAT 59.699 50.000 0.00 0.00 0.00 3.79
2476 2616 3.672808 GATGGACTGGGAGATAAGCATG 58.327 50.000 0.00 0.00 0.00 4.06
2477 2617 1.770658 TGGACTGGGAGATAAGCATGG 59.229 52.381 0.00 0.00 0.00 3.66
2478 2618 1.072965 GGACTGGGAGATAAGCATGGG 59.927 57.143 0.00 0.00 0.00 4.00
2479 2619 0.475906 ACTGGGAGATAAGCATGGGC 59.524 55.000 0.00 0.00 41.61 5.36
2492 2632 0.813184 CATGGGCTGCTAACAAGTGG 59.187 55.000 0.00 0.00 0.00 4.00
2493 2633 0.405585 ATGGGCTGCTAACAAGTGGT 59.594 50.000 0.00 0.00 0.00 4.16
2494 2634 1.060729 TGGGCTGCTAACAAGTGGTA 58.939 50.000 0.00 0.00 0.00 3.25
2495 2635 1.633432 TGGGCTGCTAACAAGTGGTAT 59.367 47.619 0.00 0.00 0.00 2.73
2496 2636 2.041081 TGGGCTGCTAACAAGTGGTATT 59.959 45.455 0.00 0.00 0.00 1.89
2497 2637 3.264706 TGGGCTGCTAACAAGTGGTATTA 59.735 43.478 0.00 0.00 0.00 0.98
2498 2638 4.263550 TGGGCTGCTAACAAGTGGTATTAA 60.264 41.667 0.00 0.00 0.00 1.40
2499 2639 4.703093 GGGCTGCTAACAAGTGGTATTAAA 59.297 41.667 0.00 0.00 0.00 1.52
2500 2640 5.163652 GGGCTGCTAACAAGTGGTATTAAAG 60.164 44.000 0.00 0.00 0.00 1.85
2501 2641 5.332707 GCTGCTAACAAGTGGTATTAAAGC 58.667 41.667 0.00 0.00 0.00 3.51
2502 2642 5.123979 GCTGCTAACAAGTGGTATTAAAGCT 59.876 40.000 0.00 0.00 0.00 3.74
2503 2643 6.494893 TGCTAACAAGTGGTATTAAAGCTG 57.505 37.500 0.00 0.00 0.00 4.24
2504 2644 5.414454 TGCTAACAAGTGGTATTAAAGCTGG 59.586 40.000 0.00 0.00 0.00 4.85
2505 2645 4.783764 AACAAGTGGTATTAAAGCTGGC 57.216 40.909 0.00 0.00 0.00 4.85
2506 2646 3.089284 ACAAGTGGTATTAAAGCTGGCC 58.911 45.455 0.00 0.00 0.00 5.36
2507 2647 2.427095 CAAGTGGTATTAAAGCTGGCCC 59.573 50.000 0.00 0.00 0.00 5.80
2508 2648 1.063942 AGTGGTATTAAAGCTGGCCCC 60.064 52.381 0.00 0.00 0.00 5.80
2509 2649 0.260523 TGGTATTAAAGCTGGCCCCC 59.739 55.000 0.00 0.00 0.00 5.40
2510 2650 0.260523 GGTATTAAAGCTGGCCCCCA 59.739 55.000 0.00 0.00 0.00 4.96
2511 2651 1.399714 GTATTAAAGCTGGCCCCCAC 58.600 55.000 0.00 0.00 0.00 4.61
2512 2652 0.106918 TATTAAAGCTGGCCCCCACG 60.107 55.000 0.00 0.00 0.00 4.94
2513 2653 4.733542 TAAAGCTGGCCCCCACGC 62.734 66.667 0.00 0.00 0.00 5.34
2522 2662 4.109675 CCCCCACGCCACCCTAAG 62.110 72.222 0.00 0.00 0.00 2.18
2523 2663 4.109675 CCCCACGCCACCCTAAGG 62.110 72.222 0.00 0.00 40.04 2.69
2542 2682 3.581372 GGGCTTCCCTAGGGATGG 58.419 66.667 33.83 27.36 44.74 3.51
2543 2683 2.156774 GGGCTTCCCTAGGGATGGG 61.157 68.421 33.83 25.37 44.74 4.00
2544 2684 2.156774 GGCTTCCCTAGGGATGGGG 61.157 68.421 33.83 23.40 44.74 4.96
2545 2685 1.386057 GCTTCCCTAGGGATGGGGT 60.386 63.158 33.83 0.00 44.74 4.95
2546 2686 1.709994 GCTTCCCTAGGGATGGGGTG 61.710 65.000 33.83 20.17 44.74 4.61
2547 2687 0.327576 CTTCCCTAGGGATGGGGTGT 60.328 60.000 31.52 0.00 44.74 4.16
2548 2688 0.122435 TTCCCTAGGGATGGGGTGTT 59.878 55.000 31.52 0.00 44.74 3.32
2549 2689 1.028638 TCCCTAGGGATGGGGTGTTA 58.971 55.000 27.73 0.00 44.67 2.41
2550 2690 1.061657 TCCCTAGGGATGGGGTGTTAG 60.062 57.143 27.73 0.00 44.67 2.34
2551 2691 1.435256 CCTAGGGATGGGGTGTTAGG 58.565 60.000 0.00 0.00 0.00 2.69
2552 2692 1.061657 CCTAGGGATGGGGTGTTAGGA 60.062 57.143 0.00 0.00 31.42 2.94
2553 2693 2.631268 CCTAGGGATGGGGTGTTAGGAA 60.631 54.545 0.00 0.00 31.42 3.36
2554 2694 1.296002 AGGGATGGGGTGTTAGGAAC 58.704 55.000 0.00 0.00 0.00 3.62
2555 2695 0.257905 GGGATGGGGTGTTAGGAACC 59.742 60.000 0.00 0.00 36.94 3.62
2560 2700 2.751688 GGTGTTAGGAACCCGGCA 59.248 61.111 0.00 0.00 0.00 5.69
2561 2701 1.673337 GGTGTTAGGAACCCGGCAC 60.673 63.158 0.00 0.00 0.00 5.01
2562 2702 1.373812 GTGTTAGGAACCCGGCACT 59.626 57.895 0.00 0.00 0.00 4.40
2563 2703 0.672711 GTGTTAGGAACCCGGCACTC 60.673 60.000 0.00 0.00 0.00 3.51
2564 2704 1.447314 GTTAGGAACCCGGCACTCG 60.447 63.158 0.00 0.00 38.88 4.18
2586 2726 3.477899 GCAGTGCCAGTGATTTTAGTC 57.522 47.619 2.85 0.00 0.00 2.59
2587 2727 2.813754 GCAGTGCCAGTGATTTTAGTCA 59.186 45.455 2.85 0.00 0.00 3.41
2588 2728 3.365364 GCAGTGCCAGTGATTTTAGTCAC 60.365 47.826 2.85 0.00 46.90 3.67
2599 2739 6.990546 GTGATTTTAGTCACAACTCGGATAC 58.009 40.000 2.40 0.00 46.04 2.24
2612 2752 2.964343 GGATACGGGAGGAGGCTAG 58.036 63.158 0.00 0.00 0.00 3.42
2613 2753 0.612453 GGATACGGGAGGAGGCTAGG 60.612 65.000 0.00 0.00 0.00 3.02
2614 2754 0.612453 GATACGGGAGGAGGCTAGGG 60.612 65.000 0.00 0.00 0.00 3.53
2615 2755 1.072505 ATACGGGAGGAGGCTAGGGA 61.073 60.000 0.00 0.00 0.00 4.20
2616 2756 2.004408 TACGGGAGGAGGCTAGGGAC 62.004 65.000 0.00 0.00 0.00 4.46
2617 2757 3.029580 GGGAGGAGGCTAGGGACT 58.970 66.667 0.00 0.00 46.37 3.85
2618 2758 1.152419 GGGAGGAGGCTAGGGACTC 60.152 68.421 0.00 0.00 46.52 3.36
2628 2768 3.174779 GGCTAGGGACTCCTTATAAGGG 58.825 54.545 27.65 20.67 46.47 3.95
2629 2769 3.181409 GGCTAGGGACTCCTTATAAGGGA 60.181 52.174 27.65 15.21 46.47 4.20
2637 2777 3.708236 TCCTTATAAGGGAGAGTGCCT 57.292 47.619 27.65 0.00 46.47 4.75
2638 2778 3.577919 TCCTTATAAGGGAGAGTGCCTC 58.422 50.000 27.65 0.00 46.47 4.70
2639 2779 3.052109 TCCTTATAAGGGAGAGTGCCTCA 60.052 47.826 27.65 4.57 46.47 3.86
2640 2780 3.070302 CCTTATAAGGGAGAGTGCCTCAC 59.930 52.174 22.09 0.00 45.79 3.51
2651 2791 1.001860 AGTGCCTCACTCTTCTCAAGC 59.998 52.381 0.00 0.00 41.21 4.01
2652 2792 0.322975 TGCCTCACTCTTCTCAAGCC 59.677 55.000 0.00 0.00 0.00 4.35
2653 2793 0.739112 GCCTCACTCTTCTCAAGCCG 60.739 60.000 0.00 0.00 0.00 5.52
2654 2794 0.108424 CCTCACTCTTCTCAAGCCGG 60.108 60.000 0.00 0.00 0.00 6.13
2655 2795 0.605589 CTCACTCTTCTCAAGCCGGT 59.394 55.000 1.90 0.00 0.00 5.28
2656 2796 0.603569 TCACTCTTCTCAAGCCGGTC 59.396 55.000 1.90 0.00 0.00 4.79
2657 2797 0.605589 CACTCTTCTCAAGCCGGTCT 59.394 55.000 1.90 0.00 0.00 3.85
2658 2798 1.001406 CACTCTTCTCAAGCCGGTCTT 59.999 52.381 1.90 4.07 34.78 3.01
2659 2799 1.694696 ACTCTTCTCAAGCCGGTCTTT 59.305 47.619 1.90 0.00 31.27 2.52
2660 2800 2.104963 ACTCTTCTCAAGCCGGTCTTTT 59.895 45.455 1.90 0.00 31.27 2.27
2661 2801 2.481952 CTCTTCTCAAGCCGGTCTTTTG 59.518 50.000 1.90 3.56 31.27 2.44
2662 2802 2.158813 TCTTCTCAAGCCGGTCTTTTGT 60.159 45.455 1.90 0.00 31.27 2.83
2663 2803 1.593196 TCTCAAGCCGGTCTTTTGTG 58.407 50.000 1.90 4.78 31.27 3.33
2664 2804 1.140052 TCTCAAGCCGGTCTTTTGTGA 59.860 47.619 1.90 7.01 31.27 3.58
2665 2805 2.154462 CTCAAGCCGGTCTTTTGTGAT 58.846 47.619 1.90 0.00 31.27 3.06
2666 2806 2.554032 CTCAAGCCGGTCTTTTGTGATT 59.446 45.455 1.90 0.00 31.27 2.57
2667 2807 2.955660 TCAAGCCGGTCTTTTGTGATTT 59.044 40.909 1.90 0.00 31.27 2.17
2668 2808 4.138290 TCAAGCCGGTCTTTTGTGATTTA 58.862 39.130 1.90 0.00 31.27 1.40
2669 2809 4.764823 TCAAGCCGGTCTTTTGTGATTTAT 59.235 37.500 1.90 0.00 31.27 1.40
2670 2810 5.242838 TCAAGCCGGTCTTTTGTGATTTATT 59.757 36.000 1.90 0.00 31.27 1.40
2671 2811 5.059404 AGCCGGTCTTTTGTGATTTATTG 57.941 39.130 1.90 0.00 0.00 1.90
2672 2812 4.082245 AGCCGGTCTTTTGTGATTTATTGG 60.082 41.667 1.90 0.00 0.00 3.16
2673 2813 4.743493 CCGGTCTTTTGTGATTTATTGGG 58.257 43.478 0.00 0.00 0.00 4.12
2674 2814 4.173256 CGGTCTTTTGTGATTTATTGGGC 58.827 43.478 0.00 0.00 0.00 5.36
2675 2815 4.082245 CGGTCTTTTGTGATTTATTGGGCT 60.082 41.667 0.00 0.00 0.00 5.19
2676 2816 5.410924 GGTCTTTTGTGATTTATTGGGCTC 58.589 41.667 0.00 0.00 0.00 4.70
2677 2817 5.185828 GGTCTTTTGTGATTTATTGGGCTCT 59.814 40.000 0.00 0.00 0.00 4.09
2678 2818 6.325596 GTCTTTTGTGATTTATTGGGCTCTC 58.674 40.000 0.00 0.00 0.00 3.20
2679 2819 6.151817 GTCTTTTGTGATTTATTGGGCTCTCT 59.848 38.462 0.00 0.00 0.00 3.10
2680 2820 5.902613 TTTGTGATTTATTGGGCTCTCTG 57.097 39.130 0.00 0.00 0.00 3.35
2681 2821 3.282021 TGTGATTTATTGGGCTCTCTGC 58.718 45.455 0.00 0.00 41.94 4.26
2682 2822 3.054139 TGTGATTTATTGGGCTCTCTGCT 60.054 43.478 0.00 0.00 42.39 4.24
2683 2823 3.950395 GTGATTTATTGGGCTCTCTGCTT 59.050 43.478 0.00 0.00 42.39 3.91
2684 2824 3.949754 TGATTTATTGGGCTCTCTGCTTG 59.050 43.478 0.00 0.00 42.39 4.01
2685 2825 3.439857 TTTATTGGGCTCTCTGCTTGT 57.560 42.857 0.00 0.00 42.39 3.16
2686 2826 4.568072 TTTATTGGGCTCTCTGCTTGTA 57.432 40.909 0.00 0.00 42.39 2.41
2687 2827 2.706339 ATTGGGCTCTCTGCTTGTAG 57.294 50.000 0.00 0.00 42.39 2.74
2688 2828 1.352083 TTGGGCTCTCTGCTTGTAGT 58.648 50.000 0.00 0.00 42.39 2.73
2689 2829 0.610174 TGGGCTCTCTGCTTGTAGTG 59.390 55.000 0.00 0.00 42.39 2.74
2690 2830 0.107945 GGGCTCTCTGCTTGTAGTGG 60.108 60.000 0.00 0.00 42.39 4.00
2691 2831 0.898320 GGCTCTCTGCTTGTAGTGGA 59.102 55.000 0.00 0.00 42.39 4.02
2692 2832 1.134848 GGCTCTCTGCTTGTAGTGGAG 60.135 57.143 0.00 0.00 42.39 3.86
2693 2833 1.548269 GCTCTCTGCTTGTAGTGGAGT 59.452 52.381 0.00 0.00 38.95 3.85
2694 2834 2.673610 GCTCTCTGCTTGTAGTGGAGTG 60.674 54.545 0.00 0.00 38.95 3.51
2695 2835 2.560542 CTCTCTGCTTGTAGTGGAGTGT 59.439 50.000 0.00 0.00 0.00 3.55
2696 2836 2.558795 TCTCTGCTTGTAGTGGAGTGTC 59.441 50.000 0.00 0.00 0.00 3.67
2697 2837 1.618837 TCTGCTTGTAGTGGAGTGTCC 59.381 52.381 0.00 0.00 36.96 4.02
2698 2838 0.317160 TGCTTGTAGTGGAGTGTCCG 59.683 55.000 0.00 0.00 40.17 4.79
2699 2839 0.601558 GCTTGTAGTGGAGTGTCCGA 59.398 55.000 0.00 0.00 40.17 4.55
2700 2840 1.402984 GCTTGTAGTGGAGTGTCCGAG 60.403 57.143 0.00 0.00 40.17 4.63
2701 2841 1.202582 CTTGTAGTGGAGTGTCCGAGG 59.797 57.143 0.00 0.00 40.17 4.63
2702 2842 1.248785 TGTAGTGGAGTGTCCGAGGC 61.249 60.000 0.00 0.00 40.17 4.70
2703 2843 2.044555 TAGTGGAGTGTCCGAGGCG 61.045 63.158 0.00 0.00 40.17 5.52
2707 2847 4.057428 GAGTGTCCGAGGCGCACT 62.057 66.667 10.83 15.26 44.97 4.40
2708 2848 4.363990 AGTGTCCGAGGCGCACTG 62.364 66.667 10.83 0.00 41.33 3.66
2711 2851 4.373116 GTCCGAGGCGCACTGGAA 62.373 66.667 10.83 0.00 31.25 3.53
2712 2852 3.621805 TCCGAGGCGCACTGGAAA 61.622 61.111 10.83 0.00 0.00 3.13
2713 2853 3.423154 CCGAGGCGCACTGGAAAC 61.423 66.667 10.83 0.00 0.00 2.78
2714 2854 2.664851 CGAGGCGCACTGGAAACA 60.665 61.111 10.83 0.00 39.59 2.83
2715 2855 2.946762 GAGGCGCACTGGAAACAC 59.053 61.111 10.83 0.00 35.60 3.32
2716 2856 2.594592 AGGCGCACTGGAAACACC 60.595 61.111 10.83 0.00 35.60 4.16
2717 2857 3.670377 GGCGCACTGGAAACACCC 61.670 66.667 10.83 0.00 38.00 4.61
2718 2858 4.025401 GCGCACTGGAAACACCCG 62.025 66.667 0.30 0.00 38.00 5.28
2719 2859 2.280524 CGCACTGGAAACACCCGA 60.281 61.111 0.00 0.00 38.00 5.14
2720 2860 1.890041 CGCACTGGAAACACCCGAA 60.890 57.895 0.00 0.00 38.00 4.30
2721 2861 1.440938 CGCACTGGAAACACCCGAAA 61.441 55.000 0.00 0.00 38.00 3.46
2722 2862 0.310854 GCACTGGAAACACCCGAAAG 59.689 55.000 0.00 0.00 38.00 2.62
2723 2863 1.675552 CACTGGAAACACCCGAAAGT 58.324 50.000 0.00 0.00 38.00 2.66
2724 2864 2.841215 CACTGGAAACACCCGAAAGTA 58.159 47.619 0.00 0.00 38.00 2.24
2725 2865 3.408634 CACTGGAAACACCCGAAAGTAT 58.591 45.455 0.00 0.00 38.00 2.12
2726 2866 3.188460 CACTGGAAACACCCGAAAGTATG 59.812 47.826 0.00 0.00 38.00 2.39
2727 2867 3.181448 ACTGGAAACACCCGAAAGTATGT 60.181 43.478 0.00 0.00 38.00 2.29
2728 2868 3.404899 TGGAAACACCCGAAAGTATGTC 58.595 45.455 0.00 0.00 38.00 3.06
2729 2869 4.108444 TGGAAACACCCGAAAGTATGTCG 61.108 47.826 0.00 0.00 40.26 4.35
2730 2870 6.302865 TGGAAACACCCGAAAGTATGTCGA 62.303 45.833 0.00 0.00 42.13 4.20
2731 2871 7.534400 TGGAAACACCCGAAAGTATGTCGAT 62.534 44.000 0.00 0.00 42.13 3.59
2738 2878 2.470821 GAAAGTATGTCGATGGACCGG 58.529 52.381 0.00 0.00 42.73 5.28
2739 2879 0.750850 AAGTATGTCGATGGACCGGG 59.249 55.000 6.32 0.00 42.73 5.73
2740 2880 0.106369 AGTATGTCGATGGACCGGGA 60.106 55.000 6.32 0.00 42.73 5.14
2741 2881 0.314302 GTATGTCGATGGACCGGGAG 59.686 60.000 6.32 0.00 42.73 4.30
2742 2882 1.461091 TATGTCGATGGACCGGGAGC 61.461 60.000 6.32 0.00 42.73 4.70
2743 2883 3.148279 GTCGATGGACCGGGAGCT 61.148 66.667 6.32 0.00 37.19 4.09
2744 2884 3.147595 TCGATGGACCGGGAGCTG 61.148 66.667 6.32 0.00 0.00 4.24
2745 2885 4.227134 CGATGGACCGGGAGCTGG 62.227 72.222 6.32 0.00 35.68 4.85
2746 2886 3.866582 GATGGACCGGGAGCTGGG 61.867 72.222 6.32 0.00 33.40 4.45
2750 2890 4.785453 GACCGGGAGCTGGGCTTG 62.785 72.222 6.32 0.00 39.88 4.01
2759 2899 4.355720 CTGGGCTTGGGCTGCTGA 62.356 66.667 0.00 0.00 38.73 4.26
2760 2900 4.666253 TGGGCTTGGGCTGCTGAC 62.666 66.667 0.00 0.00 38.73 3.51
2761 2901 4.666253 GGGCTTGGGCTGCTGACA 62.666 66.667 0.00 0.00 38.73 3.58
2762 2902 2.598394 GGCTTGGGCTGCTGACAA 60.598 61.111 0.00 2.39 38.73 3.18
2763 2903 2.633509 GGCTTGGGCTGCTGACAAG 61.634 63.158 19.96 19.96 43.28 3.16
2764 2904 1.900498 GCTTGGGCTGCTGACAAGT 60.900 57.895 22.74 0.00 42.60 3.16
2765 2905 1.954528 CTTGGGCTGCTGACAAGTG 59.045 57.895 17.63 2.49 37.43 3.16
2766 2906 1.521450 CTTGGGCTGCTGACAAGTGG 61.521 60.000 17.63 1.98 37.43 4.00
2767 2907 2.113986 GGGCTGCTGACAAGTGGT 59.886 61.111 0.00 0.00 0.00 4.16
2768 2908 2.263741 GGGCTGCTGACAAGTGGTG 61.264 63.158 0.00 0.00 0.00 4.17
2788 2928 2.060980 CAGAGCCGTTCCTAGCCCT 61.061 63.158 0.00 0.00 0.00 5.19
2970 3110 1.616628 GGGGGTGAGGTGTCAGGAT 60.617 63.158 0.00 0.00 31.53 3.24
3005 3145 2.993899 CAGTGCCAGTAACTTTAGTCCG 59.006 50.000 0.00 0.00 0.00 4.79
3010 3150 3.306571 GCCAGTAACTTTAGTCCGACCTT 60.307 47.826 0.00 0.00 0.00 3.50
3067 3207 2.283173 TGCCACGCTCTCCTCAGA 60.283 61.111 0.00 0.00 0.00 3.27
3088 3228 4.040706 AGACCCGTGTTTTGGAATGTAGTA 59.959 41.667 0.00 0.00 0.00 1.82
3090 3230 4.040706 ACCCGTGTTTTGGAATGTAGTAGA 59.959 41.667 0.00 0.00 0.00 2.59
3113 3253 4.263550 ACTCTCTGCTTGTAGTGGACTCTA 60.264 45.833 0.00 0.00 0.00 2.43
3114 3254 4.861196 TCTCTGCTTGTAGTGGACTCTAT 58.139 43.478 0.00 0.00 0.00 1.98
3118 3258 6.365520 TCTGCTTGTAGTGGACTCTATGATA 58.634 40.000 0.00 0.00 0.00 2.15
3139 3279 1.986378 CGCACCAAAAACGTTTGAACA 59.014 42.857 15.46 0.00 45.99 3.18
3179 3319 2.676471 GTTCCGGGCTGCCAACAT 60.676 61.111 22.05 0.00 0.00 2.71
3215 3355 7.057894 TCTCTCACTCTCCTATTTTCCTCTAC 58.942 42.308 0.00 0.00 0.00 2.59
3268 3408 4.338682 GCATTTTTGCATCCATCTCTCTCT 59.661 41.667 0.00 0.00 34.41 3.10
3269 3409 5.505985 GCATTTTTGCATCCATCTCTCTCTC 60.506 44.000 0.00 0.00 34.41 3.20
3307 3468 4.572985 TCTTGTTTCAGTTTCTGCCATG 57.427 40.909 0.00 0.00 0.00 3.66
3328 3489 5.998454 TGCTCTTTCTTTCTGTTTCTCTG 57.002 39.130 0.00 0.00 0.00 3.35
3373 3534 1.003646 AGGGCAGGAGTAGAGAGACA 58.996 55.000 0.00 0.00 0.00 3.41
3393 3554 1.663695 ACTGAACAGACAAACACCGG 58.336 50.000 0.00 0.00 0.00 5.28
3409 3570 3.666253 GGTTTGTTCACGGGCCCG 61.666 66.667 42.17 42.17 46.03 6.13
3484 3645 5.269189 ACCTACCCTGGGTGATAAAAATTG 58.731 41.667 28.64 6.51 36.19 2.32
3490 3651 4.262377 CCTGGGTGATAAAAATTGCACACA 60.262 41.667 0.00 0.00 41.88 3.72
3524 3685 2.378547 ACCTAAGCTTCATTTGGTGGGA 59.621 45.455 0.00 0.00 37.00 4.37
3526 3687 3.193479 CCTAAGCTTCATTTGGTGGGAAC 59.807 47.826 0.00 0.00 0.00 3.62
3654 3816 8.559536 CAATAACACATACCGCATATTTTCTCT 58.440 33.333 0.00 0.00 0.00 3.10
3746 3912 5.204833 GCAAAACATCGCGTACATCATATT 58.795 37.500 5.77 0.00 0.00 1.28
3761 3928 7.458409 ACATCATATTTAACATCTCCATGGC 57.542 36.000 6.96 0.00 33.82 4.40
3804 3971 7.309805 GGGTTTTTAGGCATTCAGTTTGACTAT 60.310 37.037 0.00 0.00 34.71 2.12
3805 3972 8.736244 GGTTTTTAGGCATTCAGTTTGACTATA 58.264 33.333 0.00 0.00 34.71 1.31
3857 4024 0.162933 TTCGCACTTTCATTCGTCGC 59.837 50.000 0.00 0.00 0.00 5.19
3868 4035 6.313905 ACTTTCATTCGTCGCTGAATCTAAAT 59.686 34.615 9.82 0.00 36.46 1.40
4103 4270 2.664402 ATCTGACTGTTTGGGTTGCT 57.336 45.000 0.00 0.00 0.00 3.91
4228 4395 7.603404 TGTACTTTTGGTTGTTAGCGTATACAT 59.397 33.333 3.32 0.00 0.00 2.29
4242 4409 9.713713 TTAGCGTATACATAAATGGCTTATTCA 57.286 29.630 3.32 0.00 0.00 2.57
4270 4445 3.555795 CGTATGCACCATCATTAGCCTCT 60.556 47.826 0.00 0.00 0.00 3.69
4563 4739 9.462174 TTTTGTATTGCAACTGTATTCTCTTTG 57.538 29.630 0.00 0.00 36.72 2.77
5035 9487 1.547675 GGTCCAAGCAATCAAGGTGGA 60.548 52.381 0.00 0.00 0.00 4.02
5070 9522 5.048013 CAGAAGTAATTGAACCCCAGGTTTC 60.048 44.000 0.00 0.00 46.95 2.78
5082 9534 3.200165 CCCCAGGTTTCCTCTTACTAAGG 59.800 52.174 0.00 0.00 35.05 2.69
5115 9567 2.094659 CGATGTCGGACAGTGCCAC 61.095 63.158 16.84 0.00 35.37 5.01
5122 9574 1.453015 GGACAGTGCCACACAACCA 60.453 57.895 0.00 0.00 36.74 3.67
5129 9581 1.408702 GTGCCACACAACCACTCAAAT 59.591 47.619 0.00 0.00 34.08 2.32
5138 9590 0.478072 ACCACTCAAATGTCCTGCCA 59.522 50.000 0.00 0.00 0.00 4.92
5141 9593 2.619849 CCACTCAAATGTCCTGCCAGAT 60.620 50.000 0.00 0.00 0.00 2.90
5238 9695 3.495377 CCAATTCAACAATGCAACACTGG 59.505 43.478 0.00 0.00 0.00 4.00
5271 9728 5.821516 AACGAACCACAACTCAACAATTA 57.178 34.783 0.00 0.00 0.00 1.40
5316 9773 4.813027 ACGTCCGTGTACAATAGTGAATT 58.187 39.130 0.00 0.00 0.00 2.17
5501 9959 9.083036 ATACAGACGGTACTCCATATGTTGGAC 62.083 44.444 1.24 0.74 41.42 4.02
5612 10070 2.046892 CCAGAGGTGACAAGGGCG 60.047 66.667 0.00 0.00 0.00 6.13
5633 10091 4.142600 GCGGCACAAAATCTCTACATTCTT 60.143 41.667 0.00 0.00 0.00 2.52
5719 10177 1.064979 GGCTAGGGAATCGGGTTTCAA 60.065 52.381 0.00 0.00 0.00 2.69
5732 10190 0.741915 GTTTCAACGGCACCTTCCAA 59.258 50.000 0.00 0.00 0.00 3.53
5843 10301 3.402110 TGTGTGTGAGATTGGCTTGTAG 58.598 45.455 0.00 0.00 0.00 2.74
6027 10491 7.491048 CCAGGTGTATTTTTGTATTGCCAATAC 59.509 37.037 18.56 18.56 43.19 1.89
6055 10519 6.426587 ACCATGAAGAGGTACATAAAAGCAT 58.573 36.000 0.00 0.00 37.67 3.79
6192 10707 3.973206 TCATCGAGTGGGTACAAACAT 57.027 42.857 0.00 0.00 0.00 2.71
6242 10757 2.574006 AGGATGCACACAGTCAACAT 57.426 45.000 0.00 0.00 0.00 2.71
6384 10909 3.295973 CACAGGAAAACCCCTCAAAAGA 58.704 45.455 0.00 0.00 33.38 2.52
6393 10918 0.107654 CCCTCAAAAGACCCGCTAGG 60.108 60.000 0.00 0.00 43.78 3.02
6472 10997 7.899841 CGATCATATAGCACAAATTCATAACCG 59.100 37.037 0.00 0.00 0.00 4.44
6479 11004 6.686630 AGCACAAATTCATAACCGATTCAAA 58.313 32.000 0.00 0.00 0.00 2.69
6493 11018 4.135966 CGATTCAAAAATGCAACAAAGCG 58.864 39.130 0.00 0.00 37.31 4.68
6580 11106 0.603569 CGAACGGGATAGGAGGATGG 59.396 60.000 0.00 0.00 0.00 3.51
6582 11108 1.128188 AACGGGATAGGAGGATGGCC 61.128 60.000 0.00 0.00 0.00 5.36
6706 11232 0.529555 GTCAGAAGGCCTCGATCTGC 60.530 60.000 23.05 16.00 40.26 4.26
6709 11235 1.590259 GAAGGCCTCGATCTGCGTC 60.590 63.158 5.23 0.00 41.80 5.19
6725 11251 1.256812 CGTCCCCAAGGCTTCAAATT 58.743 50.000 0.00 0.00 0.00 1.82
6747 11273 2.440409 CCACCTCATTGAAACCTGGAG 58.560 52.381 0.00 0.00 0.00 3.86
6750 11276 4.338879 CACCTCATTGAAACCTGGAGATT 58.661 43.478 0.00 0.00 0.00 2.40
6752 11278 3.698040 CCTCATTGAAACCTGGAGATTGG 59.302 47.826 0.00 0.00 0.00 3.16
6753 11279 4.338879 CTCATTGAAACCTGGAGATTGGT 58.661 43.478 0.00 0.00 38.35 3.67
6754 11280 4.335416 TCATTGAAACCTGGAGATTGGTC 58.665 43.478 0.00 0.00 35.17 4.02
6755 11281 4.043310 TCATTGAAACCTGGAGATTGGTCT 59.957 41.667 0.00 0.00 35.17 3.85
6765 11291 0.687354 AGATTGGTCTTGTGGAGCGT 59.313 50.000 0.00 0.00 44.62 5.07
6773 11299 3.189376 TTGTGGAGCGTGCCATGGA 62.189 57.895 18.40 0.00 40.68 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.617959 TCTCTGTTGGTCGTAGAAACAAG 58.382 43.478 0.00 0.00 36.90 3.16
97 99 6.616947 CGTTGAAACTTAGGGATTTTGCATA 58.383 36.000 0.00 0.00 0.00 3.14
473 475 6.316140 ACGATTCAAAATTCATCCATTCGAGA 59.684 34.615 0.00 0.00 0.00 4.04
631 641 5.663456 GAGTCCAACAATATAACCCGTACA 58.337 41.667 0.00 0.00 0.00 2.90
635 645 4.049546 TCGAGTCCAACAATATAACCCG 57.950 45.455 0.00 0.00 0.00 5.28
808 902 1.065636 TGGTTGTGTCACCAAACCGTA 60.066 47.619 16.42 2.32 44.30 4.02
857 951 7.832685 GGTGTTCCCCTATACAACTTCTAAAAT 59.167 37.037 0.00 0.00 0.00 1.82
1018 1114 1.784525 GGATTCATCCTACTTCCGCG 58.215 55.000 0.00 0.00 43.73 6.46
1032 1128 4.467084 TCACCAGCGGCCGGATTC 62.467 66.667 29.38 10.23 0.00 2.52
1170 1266 1.299850 CTCATCCGCCGTAATCGCA 60.300 57.895 0.00 0.00 35.54 5.10
1313 1409 1.220749 GGCTTGTAGTGCCGGATCA 59.779 57.895 5.05 0.00 41.03 2.92
1323 1419 3.771160 ACCGGCGAGGGCTTGTAG 61.771 66.667 9.30 0.00 46.96 2.74
1390 1486 3.021695 CCTGGTCCGTAGTGAACATAGA 58.978 50.000 0.00 0.00 30.08 1.98
1550 1649 9.838339 AGAGTTAATCAGACCACTAATTAATGG 57.162 33.333 11.38 11.38 42.13 3.16
1588 1688 6.837568 TCTTACCTCCTCCTTTTACATACGAT 59.162 38.462 0.00 0.00 0.00 3.73
1601 1701 3.964031 ACATGATCACTCTTACCTCCTCC 59.036 47.826 0.00 0.00 0.00 4.30
1615 1715 6.559810 CCGTAGGCAAATTTTAACATGATCA 58.440 36.000 0.00 0.00 46.14 2.92
1657 1757 1.006337 GCCTTTGAAATGCACGGCA 60.006 52.632 0.22 1.01 44.86 5.69
1770 1870 3.296709 CTTGTCGACCACCCCGAGG 62.297 68.421 14.12 0.00 36.66 4.63
1833 1933 3.608662 TCGAACCCGTGGAAGCGT 61.609 61.111 0.00 0.00 37.05 5.07
1866 1966 3.124921 CCGCCACCAACATCGACC 61.125 66.667 0.00 0.00 0.00 4.79
1897 1997 2.405559 TCTGCAGGTGATCATCTCCAT 58.594 47.619 15.13 0.00 32.69 3.41
1913 2013 3.341823 CCCCTGATATGCTTGTATCTGC 58.658 50.000 6.11 0.00 33.26 4.26
1917 2017 3.331591 TGATGCCCCTGATATGCTTGTAT 59.668 43.478 0.00 0.00 0.00 2.29
2039 2139 9.726438 AAAGTTTATAGAGAAAGCACACAGTAT 57.274 29.630 0.00 0.00 0.00 2.12
2072 2172 6.365970 AAGAGAGAAAGAGTAAATGAGCCA 57.634 37.500 0.00 0.00 0.00 4.75
2114 2214 2.292569 GAGAGAGAGAGAGAGCATGCAG 59.707 54.545 21.98 0.00 0.00 4.41
2152 2292 3.754850 TGCGACTAAAGTCACTAGCACTA 59.245 43.478 10.55 0.00 44.99 2.74
2180 2320 0.178929 CCCTAGCCTCCTCCCGTATT 60.179 60.000 0.00 0.00 0.00 1.89
2221 2361 0.541998 TCCGGCTTGAGGAGAGTGAA 60.542 55.000 0.00 0.00 33.19 3.18
2240 2380 3.508845 AGCCCACTACATCACAAAAGT 57.491 42.857 0.00 0.00 0.00 2.66
2261 2401 2.965831 AGACACTCCACTACAAGCAGAA 59.034 45.455 0.00 0.00 0.00 3.02
2333 2473 0.184933 ACCACTTGTTAGCAGCCCAA 59.815 50.000 0.00 0.00 0.00 4.12
2354 2494 1.298667 GGGCTAGGAACGGCTTTGA 59.701 57.895 0.00 0.00 33.21 2.69
2355 2495 1.749258 GGGGCTAGGAACGGCTTTG 60.749 63.158 0.00 0.00 33.21 2.77
2356 2496 2.198304 CTGGGGCTAGGAACGGCTTT 62.198 60.000 0.00 0.00 33.21 3.51
2357 2497 2.609610 TGGGGCTAGGAACGGCTT 60.610 61.111 0.00 0.00 33.21 4.35
2358 2498 3.083997 CTGGGGCTAGGAACGGCT 61.084 66.667 0.00 0.00 33.21 5.52
2359 2499 4.176752 CCTGGGGCTAGGAACGGC 62.177 72.222 2.71 0.00 40.42 5.68
2360 2500 4.176752 GCCTGGGGCTAGGAACGG 62.177 72.222 11.66 0.00 46.69 4.44
2370 2510 2.045926 CGAAAGACTGGCCTGGGG 60.046 66.667 14.82 0.00 0.00 4.96
2371 2511 2.045926 CCGAAAGACTGGCCTGGG 60.046 66.667 14.82 0.20 0.00 4.45
2372 2512 2.045926 CCCGAAAGACTGGCCTGG 60.046 66.667 14.82 4.64 0.00 4.45
2373 2513 2.045926 CCCCGAAAGACTGGCCTG 60.046 66.667 8.29 8.29 0.00 4.85
2374 2514 2.529389 ACCCCGAAAGACTGGCCT 60.529 61.111 3.32 0.00 0.00 5.19
2375 2515 1.833787 TACACCCCGAAAGACTGGCC 61.834 60.000 0.00 0.00 0.00 5.36
2376 2516 0.391263 CTACACCCCGAAAGACTGGC 60.391 60.000 0.00 0.00 0.00 4.85
2377 2517 0.974383 ACTACACCCCGAAAGACTGG 59.026 55.000 0.00 0.00 0.00 4.00
2378 2518 1.337823 CCACTACACCCCGAAAGACTG 60.338 57.143 0.00 0.00 0.00 3.51
2379 2519 0.974383 CCACTACACCCCGAAAGACT 59.026 55.000 0.00 0.00 0.00 3.24
2380 2520 0.036671 CCCACTACACCCCGAAAGAC 60.037 60.000 0.00 0.00 0.00 3.01
2381 2521 0.472352 ACCCACTACACCCCGAAAGA 60.472 55.000 0.00 0.00 0.00 2.52
2382 2522 0.399075 AACCCACTACACCCCGAAAG 59.601 55.000 0.00 0.00 0.00 2.62
2383 2523 0.397564 GAACCCACTACACCCCGAAA 59.602 55.000 0.00 0.00 0.00 3.46
2384 2524 0.472352 AGAACCCACTACACCCCGAA 60.472 55.000 0.00 0.00 0.00 4.30
2385 2525 0.901580 GAGAACCCACTACACCCCGA 60.902 60.000 0.00 0.00 0.00 5.14
2386 2526 0.903454 AGAGAACCCACTACACCCCG 60.903 60.000 0.00 0.00 0.00 5.73
2387 2527 0.613777 CAGAGAACCCACTACACCCC 59.386 60.000 0.00 0.00 0.00 4.95
2388 2528 0.036294 GCAGAGAACCCACTACACCC 60.036 60.000 0.00 0.00 0.00 4.61
2389 2529 0.977395 AGCAGAGAACCCACTACACC 59.023 55.000 0.00 0.00 0.00 4.16
2390 2530 2.826725 ACTAGCAGAGAACCCACTACAC 59.173 50.000 0.00 0.00 0.00 2.90
2391 2531 3.170991 ACTAGCAGAGAACCCACTACA 57.829 47.619 0.00 0.00 0.00 2.74
2392 2532 5.452077 CCATTACTAGCAGAGAACCCACTAC 60.452 48.000 0.00 0.00 0.00 2.73
2393 2533 4.649674 CCATTACTAGCAGAGAACCCACTA 59.350 45.833 0.00 0.00 0.00 2.74
2394 2534 3.452627 CCATTACTAGCAGAGAACCCACT 59.547 47.826 0.00 0.00 0.00 4.00
2395 2535 3.451178 TCCATTACTAGCAGAGAACCCAC 59.549 47.826 0.00 0.00 0.00 4.61
2396 2536 3.706594 CTCCATTACTAGCAGAGAACCCA 59.293 47.826 0.00 0.00 0.00 4.51
2397 2537 3.707102 ACTCCATTACTAGCAGAGAACCC 59.293 47.826 0.00 0.00 0.00 4.11
2398 2538 4.160626 ACACTCCATTACTAGCAGAGAACC 59.839 45.833 0.00 0.00 0.00 3.62
2399 2539 5.126384 AGACACTCCATTACTAGCAGAGAAC 59.874 44.000 0.00 0.00 0.00 3.01
2400 2540 5.126222 CAGACACTCCATTACTAGCAGAGAA 59.874 44.000 0.00 0.00 0.00 2.87
2401 2541 4.642437 CAGACACTCCATTACTAGCAGAGA 59.358 45.833 0.00 0.00 0.00 3.10
2402 2542 4.642437 TCAGACACTCCATTACTAGCAGAG 59.358 45.833 0.00 0.00 0.00 3.35
2403 2543 4.600062 TCAGACACTCCATTACTAGCAGA 58.400 43.478 0.00 0.00 0.00 4.26
2404 2544 4.991153 TCAGACACTCCATTACTAGCAG 57.009 45.455 0.00 0.00 0.00 4.24
2405 2545 4.442052 GCATCAGACACTCCATTACTAGCA 60.442 45.833 0.00 0.00 0.00 3.49
2406 2546 4.054671 GCATCAGACACTCCATTACTAGC 58.945 47.826 0.00 0.00 0.00 3.42
2407 2547 4.294232 CGCATCAGACACTCCATTACTAG 58.706 47.826 0.00 0.00 0.00 2.57
2408 2548 3.490933 GCGCATCAGACACTCCATTACTA 60.491 47.826 0.30 0.00 0.00 1.82
2409 2549 2.739932 GCGCATCAGACACTCCATTACT 60.740 50.000 0.30 0.00 0.00 2.24
2410 2550 1.594862 GCGCATCAGACACTCCATTAC 59.405 52.381 0.30 0.00 0.00 1.89
2411 2551 1.206849 TGCGCATCAGACACTCCATTA 59.793 47.619 5.66 0.00 0.00 1.90
2412 2552 0.036105 TGCGCATCAGACACTCCATT 60.036 50.000 5.66 0.00 0.00 3.16
2413 2553 0.742281 GTGCGCATCAGACACTCCAT 60.742 55.000 15.91 0.00 0.00 3.41
2414 2554 1.374631 GTGCGCATCAGACACTCCA 60.375 57.895 15.91 0.00 0.00 3.86
2415 2555 2.103042 GGTGCGCATCAGACACTCC 61.103 63.158 17.62 3.62 34.70 3.85
2416 2556 2.447887 CGGTGCGCATCAGACACTC 61.448 63.158 22.51 0.22 34.70 3.51
2417 2557 2.433145 CGGTGCGCATCAGACACT 60.433 61.111 22.51 0.00 34.70 3.55
2418 2558 1.565156 TTTCGGTGCGCATCAGACAC 61.565 55.000 22.51 1.90 0.00 3.67
2419 2559 0.882484 TTTTCGGTGCGCATCAGACA 60.882 50.000 22.51 9.22 0.00 3.41
2420 2560 0.447801 ATTTTCGGTGCGCATCAGAC 59.552 50.000 22.51 3.59 0.00 3.51
2421 2561 0.447406 CATTTTCGGTGCGCATCAGA 59.553 50.000 22.51 15.79 0.00 3.27
2422 2562 0.168788 ACATTTTCGGTGCGCATCAG 59.831 50.000 22.51 13.59 0.00 2.90
2423 2563 0.167908 GACATTTTCGGTGCGCATCA 59.832 50.000 22.51 4.98 0.00 3.07
2424 2564 0.447801 AGACATTTTCGGTGCGCATC 59.552 50.000 15.91 13.67 0.00 3.91
2425 2565 0.168788 CAGACATTTTCGGTGCGCAT 59.831 50.000 15.91 0.00 0.00 4.73
2426 2566 0.882484 TCAGACATTTTCGGTGCGCA 60.882 50.000 5.66 5.66 0.00 6.09
2427 2567 0.237235 TTCAGACATTTTCGGTGCGC 59.763 50.000 0.00 0.00 0.00 6.09
2428 2568 1.262950 TGTTCAGACATTTTCGGTGCG 59.737 47.619 0.00 0.00 0.00 5.34
2429 2569 3.559238 ATGTTCAGACATTTTCGGTGC 57.441 42.857 0.00 0.00 43.92 5.01
2430 2570 5.030295 GCATATGTTCAGACATTTTCGGTG 58.970 41.667 4.29 0.00 43.92 4.94
2431 2571 4.096382 GGCATATGTTCAGACATTTTCGGT 59.904 41.667 4.29 0.00 43.92 4.69
2432 2572 4.601019 GGCATATGTTCAGACATTTTCGG 58.399 43.478 4.29 0.00 43.92 4.30
2433 2573 4.033932 TCGGCATATGTTCAGACATTTTCG 59.966 41.667 4.29 0.00 43.92 3.46
2434 2574 5.484173 TCGGCATATGTTCAGACATTTTC 57.516 39.130 4.29 0.00 43.92 2.29
2435 2575 5.221106 CCATCGGCATATGTTCAGACATTTT 60.221 40.000 4.29 0.00 43.92 1.82
2436 2576 4.276678 CCATCGGCATATGTTCAGACATTT 59.723 41.667 4.29 0.00 43.92 2.32
2437 2577 3.817084 CCATCGGCATATGTTCAGACATT 59.183 43.478 4.29 0.00 43.92 2.71
2439 2579 2.433970 TCCATCGGCATATGTTCAGACA 59.566 45.455 4.29 0.00 40.71 3.41
2440 2580 2.802816 GTCCATCGGCATATGTTCAGAC 59.197 50.000 4.29 1.44 0.00 3.51
2441 2581 2.700371 AGTCCATCGGCATATGTTCAGA 59.300 45.455 4.29 0.00 0.00 3.27
2442 2582 2.804527 CAGTCCATCGGCATATGTTCAG 59.195 50.000 4.29 0.00 0.00 3.02
2443 2583 2.485302 CCAGTCCATCGGCATATGTTCA 60.485 50.000 4.29 0.00 0.00 3.18
2444 2584 2.146342 CCAGTCCATCGGCATATGTTC 58.854 52.381 4.29 0.00 0.00 3.18
2445 2585 1.202806 CCCAGTCCATCGGCATATGTT 60.203 52.381 4.29 0.00 0.00 2.71
2446 2586 0.397941 CCCAGTCCATCGGCATATGT 59.602 55.000 4.29 0.00 0.00 2.29
2447 2587 0.686789 TCCCAGTCCATCGGCATATG 59.313 55.000 0.00 0.00 0.00 1.78
2448 2588 0.979665 CTCCCAGTCCATCGGCATAT 59.020 55.000 0.00 0.00 0.00 1.78
2449 2589 0.105709 TCTCCCAGTCCATCGGCATA 60.106 55.000 0.00 0.00 0.00 3.14
2450 2590 0.765903 ATCTCCCAGTCCATCGGCAT 60.766 55.000 0.00 0.00 0.00 4.40
2451 2591 0.105709 TATCTCCCAGTCCATCGGCA 60.106 55.000 0.00 0.00 0.00 5.69
2452 2592 1.001406 CTTATCTCCCAGTCCATCGGC 59.999 57.143 0.00 0.00 0.00 5.54
2453 2593 1.001406 GCTTATCTCCCAGTCCATCGG 59.999 57.143 0.00 0.00 0.00 4.18
2454 2594 1.688735 TGCTTATCTCCCAGTCCATCG 59.311 52.381 0.00 0.00 0.00 3.84
2455 2595 3.558746 CCATGCTTATCTCCCAGTCCATC 60.559 52.174 0.00 0.00 0.00 3.51
2456 2596 2.374504 CCATGCTTATCTCCCAGTCCAT 59.625 50.000 0.00 0.00 0.00 3.41
2457 2597 1.770658 CCATGCTTATCTCCCAGTCCA 59.229 52.381 0.00 0.00 0.00 4.02
2458 2598 1.072965 CCCATGCTTATCTCCCAGTCC 59.927 57.143 0.00 0.00 0.00 3.85
2459 2599 1.544314 GCCCATGCTTATCTCCCAGTC 60.544 57.143 0.00 0.00 33.53 3.51
2460 2600 0.475906 GCCCATGCTTATCTCCCAGT 59.524 55.000 0.00 0.00 33.53 4.00
2461 2601 3.336122 GCCCATGCTTATCTCCCAG 57.664 57.895 0.00 0.00 33.53 4.45
2473 2613 0.813184 CCACTTGTTAGCAGCCCATG 59.187 55.000 0.00 0.00 0.00 3.66
2474 2614 0.405585 ACCACTTGTTAGCAGCCCAT 59.594 50.000 0.00 0.00 0.00 4.00
2475 2615 1.060729 TACCACTTGTTAGCAGCCCA 58.939 50.000 0.00 0.00 0.00 5.36
2476 2616 2.420058 ATACCACTTGTTAGCAGCCC 57.580 50.000 0.00 0.00 0.00 5.19
2477 2617 5.676331 GCTTTAATACCACTTGTTAGCAGCC 60.676 44.000 0.00 0.00 0.00 4.85
2478 2618 5.123979 AGCTTTAATACCACTTGTTAGCAGC 59.876 40.000 0.00 0.00 0.00 5.25
2479 2619 6.403636 CCAGCTTTAATACCACTTGTTAGCAG 60.404 42.308 0.00 0.00 0.00 4.24
2480 2620 5.414454 CCAGCTTTAATACCACTTGTTAGCA 59.586 40.000 0.00 0.00 0.00 3.49
2481 2621 5.676331 GCCAGCTTTAATACCACTTGTTAGC 60.676 44.000 0.00 0.00 0.00 3.09
2482 2622 5.163652 GGCCAGCTTTAATACCACTTGTTAG 60.164 44.000 0.00 0.00 0.00 2.34
2483 2623 4.703093 GGCCAGCTTTAATACCACTTGTTA 59.297 41.667 0.00 0.00 0.00 2.41
2484 2624 3.509967 GGCCAGCTTTAATACCACTTGTT 59.490 43.478 0.00 0.00 0.00 2.83
2485 2625 3.089284 GGCCAGCTTTAATACCACTTGT 58.911 45.455 0.00 0.00 0.00 3.16
2486 2626 2.427095 GGGCCAGCTTTAATACCACTTG 59.573 50.000 4.39 0.00 0.00 3.16
2487 2627 2.623239 GGGGCCAGCTTTAATACCACTT 60.623 50.000 4.39 0.00 0.00 3.16
2488 2628 1.063942 GGGGCCAGCTTTAATACCACT 60.064 52.381 4.39 0.00 0.00 4.00
2489 2629 1.399714 GGGGCCAGCTTTAATACCAC 58.600 55.000 4.39 0.00 0.00 4.16
2490 2630 0.260523 GGGGGCCAGCTTTAATACCA 59.739 55.000 4.39 0.00 0.00 3.25
2491 2631 0.260523 TGGGGGCCAGCTTTAATACC 59.739 55.000 4.39 0.00 0.00 2.73
2492 2632 1.399714 GTGGGGGCCAGCTTTAATAC 58.600 55.000 4.39 0.00 32.34 1.89
2493 2633 0.106918 CGTGGGGGCCAGCTTTAATA 60.107 55.000 4.39 0.00 32.34 0.98
2494 2634 1.379843 CGTGGGGGCCAGCTTTAAT 60.380 57.895 4.39 0.00 32.34 1.40
2495 2635 2.034999 CGTGGGGGCCAGCTTTAA 59.965 61.111 4.39 0.00 32.34 1.52
2496 2636 4.733542 GCGTGGGGGCCAGCTTTA 62.734 66.667 4.39 0.00 32.34 1.85
2505 2645 4.109675 CTTAGGGTGGCGTGGGGG 62.110 72.222 0.00 0.00 0.00 5.40
2506 2646 4.109675 CCTTAGGGTGGCGTGGGG 62.110 72.222 0.00 0.00 0.00 4.96
2507 2647 4.109675 CCCTTAGGGTGGCGTGGG 62.110 72.222 9.64 0.00 38.25 4.61
2532 2672 1.061657 TCCTAACACCCCATCCCTAGG 60.062 57.143 0.06 0.06 0.00 3.02
2533 2673 2.438392 GTTCCTAACACCCCATCCCTAG 59.562 54.545 0.00 0.00 0.00 3.02
2534 2674 2.484602 GTTCCTAACACCCCATCCCTA 58.515 52.381 0.00 0.00 0.00 3.53
2535 2675 1.296002 GTTCCTAACACCCCATCCCT 58.704 55.000 0.00 0.00 0.00 4.20
2536 2676 0.257905 GGTTCCTAACACCCCATCCC 59.742 60.000 0.00 0.00 0.00 3.85
2537 2677 3.896854 GGTTCCTAACACCCCATCC 57.103 57.895 0.00 0.00 0.00 3.51
2543 2683 1.673337 GTGCCGGGTTCCTAACACC 60.673 63.158 2.18 0.00 0.00 4.16
2544 2684 0.672711 GAGTGCCGGGTTCCTAACAC 60.673 60.000 2.18 0.00 0.00 3.32
2545 2685 1.675219 GAGTGCCGGGTTCCTAACA 59.325 57.895 2.18 0.00 0.00 2.41
2546 2686 1.447314 CGAGTGCCGGGTTCCTAAC 60.447 63.158 2.18 0.00 33.91 2.34
2547 2687 2.975536 CGAGTGCCGGGTTCCTAA 59.024 61.111 2.18 0.00 33.91 2.69
2565 2705 6.386800 GTGACTAAAATCACTGGCACTGCC 62.387 50.000 13.68 13.68 44.71 4.85
2566 2706 2.813754 TGACTAAAATCACTGGCACTGC 59.186 45.455 0.00 0.00 0.00 4.40
2567 2707 4.410492 GTGACTAAAATCACTGGCACTG 57.590 45.455 0.00 0.00 44.71 3.66
2574 2714 8.311627 CGTATCCGAGTTGTGACTAAAATCACT 61.312 40.741 7.37 0.00 42.27 3.41
2575 2715 6.237490 CGTATCCGAGTTGTGACTAAAATCAC 60.237 42.308 0.00 0.00 42.19 3.06
2576 2716 5.803461 CGTATCCGAGTTGTGACTAAAATCA 59.197 40.000 0.00 0.00 35.88 2.57
2577 2717 5.231568 CCGTATCCGAGTTGTGACTAAAATC 59.768 44.000 0.00 0.00 35.88 2.17
2578 2718 5.107133 CCGTATCCGAGTTGTGACTAAAAT 58.893 41.667 0.00 0.00 35.88 1.82
2579 2719 4.487948 CCGTATCCGAGTTGTGACTAAAA 58.512 43.478 0.00 0.00 35.88 1.52
2580 2720 3.119388 CCCGTATCCGAGTTGTGACTAAA 60.119 47.826 0.00 0.00 35.88 1.85
2581 2721 2.424601 CCCGTATCCGAGTTGTGACTAA 59.575 50.000 0.00 0.00 35.88 2.24
2582 2722 2.019249 CCCGTATCCGAGTTGTGACTA 58.981 52.381 0.00 0.00 35.88 2.59
2583 2723 0.815734 CCCGTATCCGAGTTGTGACT 59.184 55.000 0.00 0.00 39.32 3.41
2584 2724 0.813184 TCCCGTATCCGAGTTGTGAC 59.187 55.000 0.00 0.00 35.63 3.67
2585 2725 1.100510 CTCCCGTATCCGAGTTGTGA 58.899 55.000 0.00 0.00 35.63 3.58
2586 2726 0.102481 CCTCCCGTATCCGAGTTGTG 59.898 60.000 0.00 0.00 35.63 3.33
2587 2727 0.033796 TCCTCCCGTATCCGAGTTGT 60.034 55.000 0.00 0.00 35.63 3.32
2588 2728 0.669077 CTCCTCCCGTATCCGAGTTG 59.331 60.000 0.00 0.00 35.63 3.16
2589 2729 0.467659 CCTCCTCCCGTATCCGAGTT 60.468 60.000 0.00 0.00 35.63 3.01
2590 2730 1.150992 CCTCCTCCCGTATCCGAGT 59.849 63.158 0.00 0.00 35.63 4.18
2591 2731 2.269529 GCCTCCTCCCGTATCCGAG 61.270 68.421 0.00 0.00 35.63 4.63
2592 2732 1.421346 TAGCCTCCTCCCGTATCCGA 61.421 60.000 0.00 0.00 35.63 4.55
2593 2733 0.961358 CTAGCCTCCTCCCGTATCCG 60.961 65.000 0.00 0.00 0.00 4.18
2594 2734 0.612453 CCTAGCCTCCTCCCGTATCC 60.612 65.000 0.00 0.00 0.00 2.59
2595 2735 0.612453 CCCTAGCCTCCTCCCGTATC 60.612 65.000 0.00 0.00 0.00 2.24
2596 2736 1.072505 TCCCTAGCCTCCTCCCGTAT 61.073 60.000 0.00 0.00 0.00 3.06
2597 2737 1.698840 TCCCTAGCCTCCTCCCGTA 60.699 63.158 0.00 0.00 0.00 4.02
2598 2738 3.028098 TCCCTAGCCTCCTCCCGT 61.028 66.667 0.00 0.00 0.00 5.28
2599 2739 2.522193 GTCCCTAGCCTCCTCCCG 60.522 72.222 0.00 0.00 0.00 5.14
2600 2740 1.152419 GAGTCCCTAGCCTCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
2601 2741 1.152419 GGAGTCCCTAGCCTCCTCC 60.152 68.421 0.00 7.01 43.29 4.30
2602 2742 4.611119 GGAGTCCCTAGCCTCCTC 57.389 66.667 0.00 2.52 43.29 3.71
2604 2744 2.706112 ATAAGGAGTCCCTAGCCTCC 57.294 55.000 5.25 11.45 43.48 4.30
2632 2772 1.437625 GCTTGAGAAGAGTGAGGCAC 58.562 55.000 0.00 0.00 34.10 5.01
2633 2773 0.322975 GGCTTGAGAAGAGTGAGGCA 59.677 55.000 0.00 0.00 33.59 4.75
2634 2774 0.739112 CGGCTTGAGAAGAGTGAGGC 60.739 60.000 0.00 0.00 0.00 4.70
2635 2775 0.108424 CCGGCTTGAGAAGAGTGAGG 60.108 60.000 0.00 0.00 0.00 3.86
2636 2776 0.605589 ACCGGCTTGAGAAGAGTGAG 59.394 55.000 0.00 0.00 0.00 3.51
2637 2777 0.603569 GACCGGCTTGAGAAGAGTGA 59.396 55.000 0.00 0.00 0.00 3.41
2638 2778 0.605589 AGACCGGCTTGAGAAGAGTG 59.394 55.000 0.00 0.00 0.00 3.51
2639 2779 1.343069 AAGACCGGCTTGAGAAGAGT 58.657 50.000 0.00 0.00 34.93 3.24
2640 2780 2.464157 AAAGACCGGCTTGAGAAGAG 57.536 50.000 0.00 0.00 36.80 2.85
2641 2781 2.158813 ACAAAAGACCGGCTTGAGAAGA 60.159 45.455 0.00 0.00 36.80 2.87
2642 2782 2.031682 CACAAAAGACCGGCTTGAGAAG 60.032 50.000 0.00 0.00 36.80 2.85
2643 2783 1.946768 CACAAAAGACCGGCTTGAGAA 59.053 47.619 0.00 0.00 36.80 2.87
2644 2784 1.140052 TCACAAAAGACCGGCTTGAGA 59.860 47.619 0.00 1.71 36.80 3.27
2645 2785 1.593196 TCACAAAAGACCGGCTTGAG 58.407 50.000 0.00 5.31 36.80 3.02
2646 2786 2.270352 ATCACAAAAGACCGGCTTGA 57.730 45.000 0.00 0.81 36.80 3.02
2647 2787 3.369546 AAATCACAAAAGACCGGCTTG 57.630 42.857 0.00 2.71 36.80 4.01
2648 2788 5.469479 CAATAAATCACAAAAGACCGGCTT 58.531 37.500 0.00 2.82 38.88 4.35
2649 2789 4.082245 CCAATAAATCACAAAAGACCGGCT 60.082 41.667 0.00 0.00 0.00 5.52
2650 2790 4.173256 CCAATAAATCACAAAAGACCGGC 58.827 43.478 0.00 0.00 0.00 6.13
2651 2791 4.743493 CCCAATAAATCACAAAAGACCGG 58.257 43.478 0.00 0.00 0.00 5.28
2652 2792 4.082245 AGCCCAATAAATCACAAAAGACCG 60.082 41.667 0.00 0.00 0.00 4.79
2653 2793 5.185828 AGAGCCCAATAAATCACAAAAGACC 59.814 40.000 0.00 0.00 0.00 3.85
2654 2794 6.151817 AGAGAGCCCAATAAATCACAAAAGAC 59.848 38.462 0.00 0.00 0.00 3.01
2655 2795 6.151648 CAGAGAGCCCAATAAATCACAAAAGA 59.848 38.462 0.00 0.00 0.00 2.52
2656 2796 6.327934 CAGAGAGCCCAATAAATCACAAAAG 58.672 40.000 0.00 0.00 0.00 2.27
2657 2797 5.336690 GCAGAGAGCCCAATAAATCACAAAA 60.337 40.000 0.00 0.00 37.23 2.44
2658 2798 4.158394 GCAGAGAGCCCAATAAATCACAAA 59.842 41.667 0.00 0.00 37.23 2.83
2659 2799 3.696051 GCAGAGAGCCCAATAAATCACAA 59.304 43.478 0.00 0.00 37.23 3.33
2660 2800 3.282021 GCAGAGAGCCCAATAAATCACA 58.718 45.455 0.00 0.00 37.23 3.58
2661 2801 3.978718 GCAGAGAGCCCAATAAATCAC 57.021 47.619 0.00 0.00 37.23 3.06
2673 2813 1.548269 ACTCCACTACAAGCAGAGAGC 59.452 52.381 0.00 0.00 46.19 4.09
2674 2814 2.560542 ACACTCCACTACAAGCAGAGAG 59.439 50.000 0.00 0.00 0.00 3.20
2675 2815 2.558795 GACACTCCACTACAAGCAGAGA 59.441 50.000 0.00 0.00 0.00 3.10
2676 2816 2.353208 GGACACTCCACTACAAGCAGAG 60.353 54.545 0.00 0.00 36.28 3.35
2677 2817 1.618837 GGACACTCCACTACAAGCAGA 59.381 52.381 0.00 0.00 36.28 4.26
2678 2818 1.670087 CGGACACTCCACTACAAGCAG 60.670 57.143 0.00 0.00 35.91 4.24
2679 2819 0.317160 CGGACACTCCACTACAAGCA 59.683 55.000 0.00 0.00 35.91 3.91
2680 2820 0.601558 TCGGACACTCCACTACAAGC 59.398 55.000 0.00 0.00 35.91 4.01
2681 2821 1.202582 CCTCGGACACTCCACTACAAG 59.797 57.143 0.00 0.00 35.91 3.16
2682 2822 1.254026 CCTCGGACACTCCACTACAA 58.746 55.000 0.00 0.00 35.91 2.41
2683 2823 1.248785 GCCTCGGACACTCCACTACA 61.249 60.000 0.00 0.00 35.91 2.74
2684 2824 1.511768 GCCTCGGACACTCCACTAC 59.488 63.158 0.00 0.00 35.91 2.73
2685 2825 2.044555 CGCCTCGGACACTCCACTA 61.045 63.158 0.00 0.00 35.91 2.74
2686 2826 3.374402 CGCCTCGGACACTCCACT 61.374 66.667 0.00 0.00 35.91 4.00
2695 2835 3.621805 TTTCCAGTGCGCCTCGGA 61.622 61.111 4.18 4.55 0.00 4.55
2696 2836 3.423154 GTTTCCAGTGCGCCTCGG 61.423 66.667 4.18 1.60 0.00 4.63
2697 2837 2.664851 TGTTTCCAGTGCGCCTCG 60.665 61.111 4.18 0.00 0.00 4.63
2698 2838 2.617274 GGTGTTTCCAGTGCGCCTC 61.617 63.158 4.18 0.00 35.97 4.70
2699 2839 2.594592 GGTGTTTCCAGTGCGCCT 60.595 61.111 4.18 0.00 35.97 5.52
2700 2840 3.670377 GGGTGTTTCCAGTGCGCC 61.670 66.667 4.18 0.00 38.11 6.53
2701 2841 4.025401 CGGGTGTTTCCAGTGCGC 62.025 66.667 0.00 0.00 38.11 6.09
2702 2842 1.440938 TTTCGGGTGTTTCCAGTGCG 61.441 55.000 0.00 0.00 38.11 5.34
2703 2843 0.310854 CTTTCGGGTGTTTCCAGTGC 59.689 55.000 0.00 0.00 38.11 4.40
2704 2844 1.675552 ACTTTCGGGTGTTTCCAGTG 58.324 50.000 0.00 0.00 38.11 3.66
2705 2845 3.181448 ACATACTTTCGGGTGTTTCCAGT 60.181 43.478 0.00 0.00 38.11 4.00
2706 2846 3.408634 ACATACTTTCGGGTGTTTCCAG 58.591 45.455 0.00 0.00 38.11 3.86
2707 2847 3.404899 GACATACTTTCGGGTGTTTCCA 58.595 45.455 0.00 0.00 38.11 3.53
2708 2848 2.414138 CGACATACTTTCGGGTGTTTCC 59.586 50.000 0.00 0.00 32.66 3.13
2709 2849 3.319755 TCGACATACTTTCGGGTGTTTC 58.680 45.455 0.00 0.00 37.09 2.78
2710 2850 3.389925 TCGACATACTTTCGGGTGTTT 57.610 42.857 0.00 0.00 37.09 2.83
2711 2851 3.259064 CATCGACATACTTTCGGGTGTT 58.741 45.455 0.00 0.00 37.09 3.32
2712 2852 2.418197 CCATCGACATACTTTCGGGTGT 60.418 50.000 0.00 0.00 37.09 4.16
2713 2853 2.159156 TCCATCGACATACTTTCGGGTG 60.159 50.000 0.00 0.00 37.09 4.61
2714 2854 2.104967 TCCATCGACATACTTTCGGGT 58.895 47.619 0.00 0.00 37.09 5.28
2715 2855 2.470821 GTCCATCGACATACTTTCGGG 58.529 52.381 0.00 0.00 38.99 5.14
2716 2856 2.470821 GGTCCATCGACATACTTTCGG 58.529 52.381 0.00 0.00 41.13 4.30
2717 2857 2.117137 CGGTCCATCGACATACTTTCG 58.883 52.381 0.00 0.00 41.13 3.46
2718 2858 2.470821 CCGGTCCATCGACATACTTTC 58.529 52.381 0.00 0.00 41.13 2.62
2719 2859 1.138266 CCCGGTCCATCGACATACTTT 59.862 52.381 0.00 0.00 41.13 2.66
2720 2860 0.750850 CCCGGTCCATCGACATACTT 59.249 55.000 0.00 0.00 41.13 2.24
2721 2861 0.106369 TCCCGGTCCATCGACATACT 60.106 55.000 0.00 0.00 41.13 2.12
2722 2862 0.314302 CTCCCGGTCCATCGACATAC 59.686 60.000 0.00 0.00 41.13 2.39
2723 2863 1.461091 GCTCCCGGTCCATCGACATA 61.461 60.000 0.00 0.00 41.13 2.29
2724 2864 2.797278 GCTCCCGGTCCATCGACAT 61.797 63.158 0.00 0.00 41.13 3.06
2725 2865 3.458163 GCTCCCGGTCCATCGACA 61.458 66.667 0.00 0.00 41.13 4.35
2726 2866 3.148279 AGCTCCCGGTCCATCGAC 61.148 66.667 0.00 0.00 38.38 4.20
2727 2867 3.147595 CAGCTCCCGGTCCATCGA 61.148 66.667 0.00 0.00 0.00 3.59
2728 2868 4.227134 CCAGCTCCCGGTCCATCG 62.227 72.222 0.00 0.00 0.00 3.84
2729 2869 3.866582 CCCAGCTCCCGGTCCATC 61.867 72.222 0.00 0.00 0.00 3.51
2733 2873 4.785453 CAAGCCCAGCTCCCGGTC 62.785 72.222 0.00 0.00 38.25 4.79
2742 2882 4.355720 TCAGCAGCCCAAGCCCAG 62.356 66.667 0.00 0.00 41.25 4.45
2743 2883 4.666253 GTCAGCAGCCCAAGCCCA 62.666 66.667 0.00 0.00 41.25 5.36
2744 2884 4.666253 TGTCAGCAGCCCAAGCCC 62.666 66.667 0.00 0.00 41.25 5.19
2745 2885 2.598394 TTGTCAGCAGCCCAAGCC 60.598 61.111 0.00 0.00 41.25 4.35
2746 2886 1.900498 ACTTGTCAGCAGCCCAAGC 60.900 57.895 14.09 0.00 39.30 4.01
2747 2887 1.521450 CCACTTGTCAGCAGCCCAAG 61.521 60.000 13.04 13.04 41.02 3.61
2748 2888 1.529010 CCACTTGTCAGCAGCCCAA 60.529 57.895 0.00 0.00 0.00 4.12
2749 2889 2.113774 CCACTTGTCAGCAGCCCA 59.886 61.111 0.00 0.00 0.00 5.36
2750 2890 2.113986 ACCACTTGTCAGCAGCCC 59.886 61.111 0.00 0.00 0.00 5.19
2751 2891 1.526917 ACACCACTTGTCAGCAGCC 60.527 57.895 0.00 0.00 29.79 4.85
2752 2892 4.147701 ACACCACTTGTCAGCAGC 57.852 55.556 0.00 0.00 29.79 5.25
2759 2899 1.069765 CGGCTCTGACACCACTTGT 59.930 57.895 0.00 0.00 43.10 3.16
2760 2900 0.532862 AACGGCTCTGACACCACTTG 60.533 55.000 0.00 0.00 0.00 3.16
2761 2901 0.249911 GAACGGCTCTGACACCACTT 60.250 55.000 0.00 0.00 0.00 3.16
2762 2902 1.367840 GAACGGCTCTGACACCACT 59.632 57.895 0.00 0.00 0.00 4.00
2763 2903 1.668151 GGAACGGCTCTGACACCAC 60.668 63.158 0.00 0.00 0.00 4.16
2764 2904 0.541063 TAGGAACGGCTCTGACACCA 60.541 55.000 0.00 0.00 0.00 4.17
2765 2905 0.173708 CTAGGAACGGCTCTGACACC 59.826 60.000 0.00 0.00 0.00 4.16
2766 2906 0.458716 GCTAGGAACGGCTCTGACAC 60.459 60.000 0.00 0.00 0.00 3.67
2767 2907 1.605058 GGCTAGGAACGGCTCTGACA 61.605 60.000 0.00 0.00 33.21 3.58
2768 2908 1.142097 GGCTAGGAACGGCTCTGAC 59.858 63.158 0.00 0.00 33.21 3.51
2788 2928 0.404040 CACCCCAAAAGACTGGCCTA 59.596 55.000 3.32 0.00 34.88 3.93
2956 3096 0.970937 TCGGGATCCTGACACCTCAC 60.971 60.000 19.95 0.00 0.00 3.51
3005 3145 1.614413 CCTGCTCCCGTATCTAAGGTC 59.386 57.143 0.00 0.00 0.00 3.85
3010 3150 1.271982 CCTAGCCTGCTCCCGTATCTA 60.272 57.143 0.00 0.00 0.00 1.98
3052 3192 2.716017 GGGTCTGAGGAGAGCGTGG 61.716 68.421 0.00 0.00 46.08 4.94
3067 3207 3.217681 ACTACATTCCAAAACACGGGT 57.782 42.857 0.00 0.00 0.00 5.28
3088 3228 2.823154 GTCCACTACAAGCAGAGAGTCT 59.177 50.000 0.00 0.00 0.00 3.24
3090 3230 2.823154 GAGTCCACTACAAGCAGAGAGT 59.177 50.000 0.00 0.00 0.00 3.24
3113 3253 3.907894 AACGTTTTTGGTGCGTATCAT 57.092 38.095 0.00 0.00 37.92 2.45
3114 3254 3.064958 TCAAACGTTTTTGGTGCGTATCA 59.935 39.130 11.66 0.00 42.23 2.15
3118 3258 1.987074 GTTCAAACGTTTTTGGTGCGT 59.013 42.857 11.66 0.00 42.23 5.24
3179 3319 4.202357 GGAGAGTGAGAGATAGAGAGAGCA 60.202 50.000 0.00 0.00 0.00 4.26
3262 3402 2.011548 GCGCACAGAGAGAGAGAGAGA 61.012 57.143 0.30 0.00 0.00 3.10
3263 3403 0.378257 GCGCACAGAGAGAGAGAGAG 59.622 60.000 0.30 0.00 0.00 3.20
3268 3408 1.615883 AGAAAAGCGCACAGAGAGAGA 59.384 47.619 11.47 0.00 0.00 3.10
3269 3409 2.077413 AGAAAAGCGCACAGAGAGAG 57.923 50.000 11.47 0.00 0.00 3.20
3307 3468 5.049749 GGACAGAGAAACAGAAAGAAAGAGC 60.050 44.000 0.00 0.00 0.00 4.09
3328 3489 2.106684 GGGGAATCCATCTGGTTAGGAC 59.893 54.545 0.09 0.00 33.57 3.85
3373 3534 2.014128 CCGGTGTTTGTCTGTTCAGTT 58.986 47.619 0.00 0.00 0.00 3.16
3393 3554 4.337060 GCGGGCCCGTGAACAAAC 62.337 66.667 42.53 21.64 42.09 2.93
3409 3570 1.024271 TGTCTTCAGGTGCACTTTGC 58.976 50.000 17.98 0.00 45.29 3.68
3474 3635 6.446318 TCAGGAAGTGTGTGCAATTTTTATC 58.554 36.000 0.00 0.00 32.65 1.75
3484 3645 1.599542 GTGAACTCAGGAAGTGTGTGC 59.400 52.381 0.00 0.00 38.58 4.57
3490 3651 3.243724 AGCTTAGGTGAACTCAGGAAGT 58.756 45.455 0.00 0.00 41.10 3.01
3654 3816 6.202331 TCTGGACACTATCTCCTCCAATTTA 58.798 40.000 0.00 0.00 32.30 1.40
3746 3912 5.997746 GCTTATAGTGCCATGGAGATGTTAA 59.002 40.000 18.40 4.76 0.00 2.01
3761 3928 0.532862 CCCGTGCCTGGCTTATAGTG 60.533 60.000 21.03 1.44 0.00 2.74
4064 4231 8.270744 GTCAGATAGGCCTGGAATAATCATAAT 58.729 37.037 17.99 0.00 34.99 1.28
4103 4270 2.683933 GAGACTCCAGGCCGGGAA 60.684 66.667 25.63 9.75 36.27 3.97
4194 4361 3.053170 ACAACCAAAAGTACAACCCCTCT 60.053 43.478 0.00 0.00 0.00 3.69
4228 4395 4.839121 ACGTCTGGTGAATAAGCCATTTA 58.161 39.130 0.00 0.00 33.84 1.40
4242 4409 0.901827 TGATGGTGCATACGTCTGGT 59.098 50.000 12.82 0.00 0.00 4.00
4352 4527 0.106335 TTGAAAGTTCCGCGGGTACA 59.894 50.000 27.83 14.03 0.00 2.90
4434 4609 2.428890 TGGTGACAAAAAGATTGGCGTT 59.571 40.909 0.00 0.00 37.44 4.84
4563 4739 3.737266 CAGTCACAACATCCATGCAAAAC 59.263 43.478 0.00 0.00 0.00 2.43
4666 4842 4.955450 TGCATTGGGTTGACATTAGCTAAT 59.045 37.500 13.37 13.37 0.00 1.73
4667 4843 4.339748 TGCATTGGGTTGACATTAGCTAA 58.660 39.130 8.99 8.99 0.00 3.09
4671 4847 3.091545 ACCTGCATTGGGTTGACATTAG 58.908 45.455 0.00 0.00 32.46 1.73
4843 7306 4.139786 TGAGGGTGTATCACGTATCTACC 58.860 47.826 0.00 0.00 34.83 3.18
5035 9487 2.584835 TTACTTCTGCACAAGGGCAT 57.415 45.000 6.67 0.00 43.97 4.40
5070 9522 4.182339 GCGGAGAAAACCTTAGTAAGAGG 58.818 47.826 11.66 0.00 40.24 3.69
5115 9567 2.287788 GCAGGACATTTGAGTGGTTGTG 60.288 50.000 0.00 0.00 0.00 3.33
5122 9574 4.265073 GTTATCTGGCAGGACATTTGAGT 58.735 43.478 15.73 0.00 0.00 3.41
5129 9581 1.003118 GTGTGGTTATCTGGCAGGACA 59.997 52.381 15.73 5.60 0.00 4.02
5138 9590 7.437713 TTTGATATGAGGAGTGTGGTTATCT 57.562 36.000 0.00 0.00 0.00 1.98
5141 9593 6.177610 GGTTTTGATATGAGGAGTGTGGTTA 58.822 40.000 0.00 0.00 0.00 2.85
5238 9695 3.246619 TGTGGTTCGTTTTGCTTTGTTC 58.753 40.909 0.00 0.00 0.00 3.18
5271 9728 8.401709 ACGTTGAATTTAATTTTGGCATGTTTT 58.598 25.926 0.00 0.00 0.00 2.43
5316 9773 6.148315 TGTTTGTCACAATGAAAACATTGCAA 59.852 30.769 18.64 0.00 44.10 4.08
5501 9959 4.393062 AGAACCTTTATGCAGTCATTGTCG 59.607 41.667 0.00 0.00 34.22 4.35
5612 10070 6.500684 TCAAGAATGTAGAGATTTTGTGCC 57.499 37.500 0.00 0.00 0.00 5.01
5633 10091 9.889128 TCAGAGTTATTTAACATCATCACATCA 57.111 29.630 3.50 0.00 38.62 3.07
5719 10177 0.110486 AGTTGATTGGAAGGTGCCGT 59.890 50.000 0.00 0.00 0.00 5.68
5806 10264 5.983118 TCACACACATTATCAATAGTAGCCG 59.017 40.000 0.00 0.00 0.00 5.52
6027 10491 7.465513 GCTTTTATGTACCTCTTCATGGTAACG 60.466 40.741 0.00 0.00 41.16 3.18
6192 10707 0.322456 GGCTGGGTGTGTGCTCATTA 60.322 55.000 0.00 0.00 0.00 1.90
6384 10909 3.246112 TGTGGTTGCCTAGCGGGT 61.246 61.111 1.06 0.00 37.43 5.28
6393 10918 5.627499 TTTGATATGAAGAGTGTGGTTGC 57.373 39.130 0.00 0.00 0.00 4.17
6472 10997 5.327502 TCGCTTTGTTGCATTTTTGAATC 57.672 34.783 0.00 0.00 0.00 2.52
6479 11004 4.209703 CACTCATTTCGCTTTGTTGCATTT 59.790 37.500 0.00 0.00 0.00 2.32
6493 11018 4.336713 GCCCTGTTTCCTATCACTCATTTC 59.663 45.833 0.00 0.00 0.00 2.17
6537 11063 0.104144 TCCCTCCCAACTTCCTCCAA 60.104 55.000 0.00 0.00 0.00 3.53
6538 11064 0.121197 ATCCCTCCCAACTTCCTCCA 59.879 55.000 0.00 0.00 0.00 3.86
6542 11068 0.256177 GTGGATCCCTCCCAACTTCC 59.744 60.000 9.90 0.00 41.29 3.46
6580 11106 1.070914 CCTAATCCTTCCCTTCGAGGC 59.929 57.143 0.00 0.00 32.73 4.70
6582 11108 3.031736 TGTCCTAATCCTTCCCTTCGAG 58.968 50.000 0.00 0.00 0.00 4.04
6659 11185 3.788227 TTATATGCTTCCCATCGGCTT 57.212 42.857 0.00 0.00 35.34 4.35
6666 11192 2.553602 CTGCGCAATTATATGCTTCCCA 59.446 45.455 13.05 0.00 44.21 4.37
6686 11212 1.110442 CAGATCGAGGCCTTCTGACT 58.890 55.000 23.36 10.12 39.36 3.41
6706 11232 1.067635 CAATTTGAAGCCTTGGGGACG 60.068 52.381 0.00 0.00 33.58 4.79
6709 11235 3.538379 GCAATTTGAAGCCTTGGGG 57.462 52.632 0.00 0.00 0.00 4.96
6725 11251 1.619654 CAGGTTTCAATGAGGTGGCA 58.380 50.000 0.00 0.00 0.00 4.92
6747 11273 0.798776 CACGCTCCACAAGACCAATC 59.201 55.000 0.00 0.00 0.00 2.67
6750 11276 2.280797 GCACGCTCCACAAGACCA 60.281 61.111 0.00 0.00 0.00 4.02
6752 11278 1.672356 ATGGCACGCTCCACAAGAC 60.672 57.895 0.00 0.00 39.25 3.01
6753 11279 1.672030 CATGGCACGCTCCACAAGA 60.672 57.895 0.00 0.00 39.25 3.02
6754 11280 2.693762 CCATGGCACGCTCCACAAG 61.694 63.158 0.00 0.00 39.25 3.16
6755 11281 2.672651 CCATGGCACGCTCCACAA 60.673 61.111 0.00 0.00 39.25 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.