Multiple sequence alignment - TraesCS1D01G033100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G033100 chr1D 100.000 4364 0 0 1 4364 13261442 13265805 0.000000e+00 8059
1 TraesCS1D01G033100 chr1D 86.519 3108 346 40 930 3994 12552048 12548971 0.000000e+00 3350
2 TraesCS1D01G033100 chr1D 89.237 2397 237 12 986 3373 13252268 13254652 0.000000e+00 2977
3 TraesCS1D01G033100 chr1D 98.592 71 1 0 4048 4118 13265448 13265518 4.580000e-25 126
4 TraesCS1D01G033100 chr1D 98.592 71 1 0 4007 4077 13265489 13265559 4.580000e-25 126
5 TraesCS1D01G033100 chr1B 88.199 3076 314 20 930 3986 18118714 18115669 0.000000e+00 3624
6 TraesCS1D01G033100 chr1B 88.922 2699 249 22 1298 3986 19075907 19073249 0.000000e+00 3282
7 TraesCS1D01G033100 chr1B 88.712 2392 253 6 986 3373 18867700 18870078 0.000000e+00 2905
8 TraesCS1D01G033100 chr1B 85.250 2800 353 40 984 3761 17896581 17893820 0.000000e+00 2828
9 TraesCS1D01G033100 chr1B 85.353 2410 306 30 1368 3767 539872559 539870187 0.000000e+00 2451
10 TraesCS1D01G033100 chr1B 90.237 1690 137 9 2307 3986 17965661 17963990 0.000000e+00 2182
11 TraesCS1D01G033100 chr1B 87.413 1867 220 7 989 2852 539933632 539931778 0.000000e+00 2132
12 TraesCS1D01G033100 chr1B 76.371 474 74 18 3585 4035 18113466 18113008 2.040000e-53 220
13 TraesCS1D01G033100 chr1B 83.575 207 29 5 4152 4354 18870538 18870743 5.760000e-44 189
14 TraesCS1D01G033100 chr1A 87.426 2712 295 24 785 3462 14584692 14587391 0.000000e+00 3077
15 TraesCS1D01G033100 chr1A 85.833 2647 312 34 782 3383 14577328 14579956 0.000000e+00 2752
16 TraesCS1D01G033100 chr2B 85.053 3004 354 62 987 3937 95097481 95094520 0.000000e+00 2972
17 TraesCS1D01G033100 chr5D 95.718 794 22 2 1 782 106944639 106943846 0.000000e+00 1267
18 TraesCS1D01G033100 chr6A 92.929 792 44 2 3 782 20306217 20305426 0.000000e+00 1142
19 TraesCS1D01G033100 chr5B 86.202 761 85 6 1 746 507892385 507893140 0.000000e+00 806
20 TraesCS1D01G033100 chr7D 91.443 409 32 1 107 515 299600732 299600327 3.810000e-155 558
21 TraesCS1D01G033100 chr7D 89.583 240 24 1 543 782 299600332 299600094 1.970000e-78 303
22 TraesCS1D01G033100 chr7D 78.042 378 63 11 4 368 581267354 581266984 2.040000e-53 220
23 TraesCS1D01G033100 chr7D 97.248 109 3 0 1 109 295538066 295538174 7.450000e-43 185
24 TraesCS1D01G033100 chr2D 76.329 207 46 3 1 206 645938576 645938780 1.660000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G033100 chr1D 13261442 13265805 4363 False 2770.333333 8059 99.061333 1 4364 3 chr1D.!!$F2 4363
1 TraesCS1D01G033100 chr1D 12548971 12552048 3077 True 3350.000000 3350 86.519000 930 3994 1 chr1D.!!$R1 3064
2 TraesCS1D01G033100 chr1D 13252268 13254652 2384 False 2977.000000 2977 89.237000 986 3373 1 chr1D.!!$F1 2387
3 TraesCS1D01G033100 chr1B 19073249 19075907 2658 True 3282.000000 3282 88.922000 1298 3986 1 chr1B.!!$R3 2688
4 TraesCS1D01G033100 chr1B 17893820 17896581 2761 True 2828.000000 2828 85.250000 984 3761 1 chr1B.!!$R1 2777
5 TraesCS1D01G033100 chr1B 539870187 539872559 2372 True 2451.000000 2451 85.353000 1368 3767 1 chr1B.!!$R4 2399
6 TraesCS1D01G033100 chr1B 17963990 17965661 1671 True 2182.000000 2182 90.237000 2307 3986 1 chr1B.!!$R2 1679
7 TraesCS1D01G033100 chr1B 539931778 539933632 1854 True 2132.000000 2132 87.413000 989 2852 1 chr1B.!!$R5 1863
8 TraesCS1D01G033100 chr1B 18113008 18118714 5706 True 1922.000000 3624 82.285000 930 4035 2 chr1B.!!$R6 3105
9 TraesCS1D01G033100 chr1B 18867700 18870743 3043 False 1547.000000 2905 86.143500 986 4354 2 chr1B.!!$F1 3368
10 TraesCS1D01G033100 chr1A 14584692 14587391 2699 False 3077.000000 3077 87.426000 785 3462 1 chr1A.!!$F2 2677
11 TraesCS1D01G033100 chr1A 14577328 14579956 2628 False 2752.000000 2752 85.833000 782 3383 1 chr1A.!!$F1 2601
12 TraesCS1D01G033100 chr2B 95094520 95097481 2961 True 2972.000000 2972 85.053000 987 3937 1 chr2B.!!$R1 2950
13 TraesCS1D01G033100 chr5D 106943846 106944639 793 True 1267.000000 1267 95.718000 1 782 1 chr5D.!!$R1 781
14 TraesCS1D01G033100 chr6A 20305426 20306217 791 True 1142.000000 1142 92.929000 3 782 1 chr6A.!!$R1 779
15 TraesCS1D01G033100 chr5B 507892385 507893140 755 False 806.000000 806 86.202000 1 746 1 chr5B.!!$F1 745
16 TraesCS1D01G033100 chr7D 299600094 299600732 638 True 430.500000 558 90.513000 107 782 2 chr7D.!!$R2 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 457 0.172578 CGCACCAGATAACGAGGTCA 59.827 55.0 0.00 0.0 32.15 4.02 F
736 752 0.179062 ATCTGTCTTGGATCCAGCGC 60.179 55.0 15.53 0.0 0.00 5.92 F
927 953 0.320771 AGCTGAACGTTGCCACCTAG 60.321 55.0 5.00 0.0 0.00 3.02 F
1988 2067 0.779997 AAGGGCCTGAAACCTGACAT 59.220 50.0 6.92 0.0 37.13 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 2317 0.249120 CAGCATCGTCCAACCTACCA 59.751 55.000 0.00 0.0 0.00 3.25 R
2427 2506 0.815213 TGCATAGGTTCTGCATCGCC 60.815 55.000 0.00 0.0 44.30 5.54 R
2464 2543 2.505819 AGTCAAGGATATCCCGTGCTTT 59.494 45.455 18.56 1.9 43.06 3.51 R
3799 4215 0.261696 AACCAGACAAAAGGGGCACT 59.738 50.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
234 238 5.701290 TCCGAAGTTCTCCTTTCTGAAAATC 59.299 40.000 4.18 0.00 32.03 2.17
402 418 4.227134 CTGGCGGTGGAGATCCCG 62.227 72.222 3.98 3.98 46.90 5.14
408 424 3.923354 GGTGGAGATCCCGATGATG 57.077 57.895 0.00 0.00 37.93 3.07
409 425 1.342074 GGTGGAGATCCCGATGATGA 58.658 55.000 0.00 0.00 37.93 2.92
410 426 1.905215 GGTGGAGATCCCGATGATGAT 59.095 52.381 0.00 0.00 37.93 2.45
411 427 2.304180 GGTGGAGATCCCGATGATGATT 59.696 50.000 0.00 0.00 37.93 2.57
412 428 3.244700 GGTGGAGATCCCGATGATGATTT 60.245 47.826 0.00 0.00 37.93 2.17
413 429 3.750130 GTGGAGATCCCGATGATGATTTG 59.250 47.826 0.00 0.00 37.93 2.32
414 430 3.392285 TGGAGATCCCGATGATGATTTGT 59.608 43.478 0.00 0.00 37.93 2.83
415 431 3.999663 GGAGATCCCGATGATGATTTGTC 59.000 47.826 0.00 0.00 32.41 3.18
416 432 3.999663 GAGATCCCGATGATGATTTGTCC 59.000 47.826 0.00 0.00 32.41 4.02
417 433 3.649981 AGATCCCGATGATGATTTGTCCT 59.350 43.478 0.00 0.00 32.41 3.85
418 434 3.475566 TCCCGATGATGATTTGTCCTC 57.524 47.619 0.00 0.00 0.00 3.71
419 435 3.041211 TCCCGATGATGATTTGTCCTCT 58.959 45.455 0.00 0.00 0.00 3.69
420 436 4.223144 TCCCGATGATGATTTGTCCTCTA 58.777 43.478 0.00 0.00 0.00 2.43
421 437 4.039245 TCCCGATGATGATTTGTCCTCTAC 59.961 45.833 0.00 0.00 0.00 2.59
422 438 4.310769 CCGATGATGATTTGTCCTCTACC 58.689 47.826 0.00 0.00 0.00 3.18
423 439 3.983988 CGATGATGATTTGTCCTCTACCG 59.016 47.826 0.00 0.00 0.00 4.02
424 440 3.179443 TGATGATTTGTCCTCTACCGC 57.821 47.619 0.00 0.00 0.00 5.68
425 441 2.499693 TGATGATTTGTCCTCTACCGCA 59.500 45.455 0.00 0.00 0.00 5.69
426 442 2.380084 TGATTTGTCCTCTACCGCAC 57.620 50.000 0.00 0.00 0.00 5.34
427 443 1.066430 TGATTTGTCCTCTACCGCACC 60.066 52.381 0.00 0.00 0.00 5.01
428 444 0.981183 ATTTGTCCTCTACCGCACCA 59.019 50.000 0.00 0.00 0.00 4.17
429 445 0.320374 TTTGTCCTCTACCGCACCAG 59.680 55.000 0.00 0.00 0.00 4.00
430 446 0.541063 TTGTCCTCTACCGCACCAGA 60.541 55.000 0.00 0.00 0.00 3.86
431 447 0.324368 TGTCCTCTACCGCACCAGAT 60.324 55.000 0.00 0.00 0.00 2.90
432 448 1.064240 TGTCCTCTACCGCACCAGATA 60.064 52.381 0.00 0.00 0.00 1.98
433 449 2.029623 GTCCTCTACCGCACCAGATAA 58.970 52.381 0.00 0.00 0.00 1.75
434 450 2.029623 TCCTCTACCGCACCAGATAAC 58.970 52.381 0.00 0.00 0.00 1.89
435 451 1.269102 CCTCTACCGCACCAGATAACG 60.269 57.143 0.00 0.00 0.00 3.18
436 452 1.674441 CTCTACCGCACCAGATAACGA 59.326 52.381 0.00 0.00 0.00 3.85
437 453 1.674441 TCTACCGCACCAGATAACGAG 59.326 52.381 0.00 0.00 0.00 4.18
438 454 0.742505 TACCGCACCAGATAACGAGG 59.257 55.000 0.00 0.00 0.00 4.63
439 455 1.255667 ACCGCACCAGATAACGAGGT 61.256 55.000 0.00 0.00 35.65 3.85
440 456 0.527817 CCGCACCAGATAACGAGGTC 60.528 60.000 0.00 0.00 32.15 3.85
441 457 0.172578 CGCACCAGATAACGAGGTCA 59.827 55.000 0.00 0.00 32.15 4.02
442 458 1.799181 CGCACCAGATAACGAGGTCAG 60.799 57.143 0.00 0.00 32.15 3.51
443 459 1.204941 GCACCAGATAACGAGGTCAGT 59.795 52.381 0.00 0.00 32.15 3.41
444 460 2.881074 CACCAGATAACGAGGTCAGTG 58.119 52.381 0.00 0.00 32.15 3.66
445 461 1.825474 ACCAGATAACGAGGTCAGTGG 59.175 52.381 0.00 0.00 0.00 4.00
446 462 1.471676 CCAGATAACGAGGTCAGTGGC 60.472 57.143 0.00 0.00 0.00 5.01
447 463 1.204704 CAGATAACGAGGTCAGTGGCA 59.795 52.381 0.00 0.00 0.00 4.92
448 464 1.204941 AGATAACGAGGTCAGTGGCAC 59.795 52.381 10.29 10.29 0.00 5.01
449 465 0.249398 ATAACGAGGTCAGTGGCACC 59.751 55.000 15.27 0.00 0.00 5.01
450 466 2.149803 TAACGAGGTCAGTGGCACCG 62.150 60.000 15.27 11.97 39.13 4.94
452 468 4.008933 GAGGTCAGTGGCACCGCT 62.009 66.667 15.27 0.00 39.13 5.52
453 469 3.941657 GAGGTCAGTGGCACCGCTC 62.942 68.421 15.27 3.38 39.13 5.03
455 471 4.008933 GTCAGTGGCACCGCTCCT 62.009 66.667 15.27 0.00 34.14 3.69
456 472 4.007644 TCAGTGGCACCGCTCCTG 62.008 66.667 15.27 4.90 34.14 3.86
459 475 4.767255 GTGGCACCGCTCCTGGAG 62.767 72.222 19.55 19.55 0.00 3.86
467 483 4.828925 GCTCCTGGAGGCGACAGC 62.829 72.222 24.43 5.97 44.18 4.40
468 484 4.504916 CTCCTGGAGGCGACAGCG 62.505 72.222 16.19 0.00 46.35 5.18
507 523 4.742201 CGTCAGGGCCCACAGACG 62.742 72.222 34.47 34.47 46.12 4.18
508 524 4.394712 GTCAGGGCCCACAGACGG 62.395 72.222 27.56 3.91 0.00 4.79
533 549 4.994471 CCAGCGCACTCAGCCACA 62.994 66.667 11.47 0.00 41.38 4.17
534 550 3.420606 CAGCGCACTCAGCCACAG 61.421 66.667 11.47 0.00 41.38 3.66
535 551 4.694233 AGCGCACTCAGCCACAGG 62.694 66.667 11.47 0.00 41.38 4.00
536 552 4.687215 GCGCACTCAGCCACAGGA 62.687 66.667 0.30 0.00 41.38 3.86
537 553 2.433838 CGCACTCAGCCACAGGAG 60.434 66.667 0.00 0.00 41.38 3.69
538 554 2.046507 GCACTCAGCCACAGGAGG 60.047 66.667 0.00 0.00 37.23 4.30
539 555 2.667418 CACTCAGCCACAGGAGGG 59.333 66.667 0.00 0.00 35.45 4.30
577 593 3.801997 CTCCCCAAGCCGCCAGAT 61.802 66.667 0.00 0.00 0.00 2.90
578 594 4.113815 TCCCCAAGCCGCCAGATG 62.114 66.667 0.00 0.00 0.00 2.90
597 613 3.220222 CGCAGCCCTCTCCACATA 58.780 61.111 0.00 0.00 0.00 2.29
598 614 1.227380 CGCAGCCCTCTCCACATAC 60.227 63.158 0.00 0.00 0.00 2.39
599 615 1.147153 GCAGCCCTCTCCACATACC 59.853 63.158 0.00 0.00 0.00 2.73
600 616 1.626356 GCAGCCCTCTCCACATACCA 61.626 60.000 0.00 0.00 0.00 3.25
601 617 0.467384 CAGCCCTCTCCACATACCAG 59.533 60.000 0.00 0.00 0.00 4.00
602 618 1.147153 GCCCTCTCCACATACCAGC 59.853 63.158 0.00 0.00 0.00 4.85
603 619 1.443407 CCCTCTCCACATACCAGCG 59.557 63.158 0.00 0.00 0.00 5.18
604 620 1.443407 CCTCTCCACATACCAGCGG 59.557 63.158 0.00 0.00 0.00 5.52
605 621 1.443407 CTCTCCACATACCAGCGGG 59.557 63.158 0.00 0.00 41.29 6.13
606 622 2.203070 CTCCACATACCAGCGGGC 60.203 66.667 1.46 0.00 37.90 6.13
607 623 3.757248 CTCCACATACCAGCGGGCC 62.757 68.421 1.46 0.00 37.90 5.80
608 624 4.108299 CCACATACCAGCGGGCCA 62.108 66.667 4.39 0.00 37.90 5.36
609 625 2.045438 CACATACCAGCGGGCCAA 60.045 61.111 4.39 0.00 37.90 4.52
610 626 2.045340 ACATACCAGCGGGCCAAC 60.045 61.111 4.39 0.00 37.90 3.77
611 627 3.202001 CATACCAGCGGGCCAACG 61.202 66.667 4.39 0.00 37.90 4.10
612 628 4.483243 ATACCAGCGGGCCAACGG 62.483 66.667 4.39 1.89 37.90 4.44
619 635 3.702048 CGGGCCAACGGAGGAGAA 61.702 66.667 4.39 0.00 0.00 2.87
620 636 2.046217 GGGCCAACGGAGGAGAAC 60.046 66.667 4.39 0.00 0.00 3.01
621 637 2.046217 GGCCAACGGAGGAGAACC 60.046 66.667 0.00 0.00 0.00 3.62
622 638 2.747686 GCCAACGGAGGAGAACCA 59.252 61.111 0.00 0.00 38.94 3.67
623 639 1.376037 GCCAACGGAGGAGAACCAG 60.376 63.158 0.00 0.00 38.94 4.00
624 640 1.296715 CCAACGGAGGAGAACCAGG 59.703 63.158 0.00 0.00 38.94 4.45
625 641 1.481056 CCAACGGAGGAGAACCAGGT 61.481 60.000 0.00 0.00 38.94 4.00
626 642 0.320771 CAACGGAGGAGAACCAGGTG 60.321 60.000 0.00 0.00 38.94 4.00
627 643 1.481056 AACGGAGGAGAACCAGGTGG 61.481 60.000 0.00 0.00 38.94 4.61
628 644 2.671682 GGAGGAGAACCAGGTGGC 59.328 66.667 0.00 0.00 39.32 5.01
629 645 2.671682 GAGGAGAACCAGGTGGCC 59.328 66.667 0.00 0.00 39.32 5.36
630 646 2.936032 AGGAGAACCAGGTGGCCC 60.936 66.667 0.00 0.00 39.32 5.80
631 647 3.256960 GGAGAACCAGGTGGCCCA 61.257 66.667 0.00 0.00 39.32 5.36
632 648 2.840753 GGAGAACCAGGTGGCCCAA 61.841 63.158 0.00 0.00 39.32 4.12
633 649 1.603739 GAGAACCAGGTGGCCCAAC 60.604 63.158 0.00 0.00 39.32 3.77
634 650 2.983592 GAACCAGGTGGCCCAACG 60.984 66.667 0.00 0.00 39.32 4.10
635 651 4.596585 AACCAGGTGGCCCAACGG 62.597 66.667 0.00 7.93 39.32 4.44
641 657 4.338710 GTGGCCCAACGGGTGCTA 62.339 66.667 0.00 0.00 46.51 3.49
642 658 4.338710 TGGCCCAACGGGTGCTAC 62.339 66.667 0.00 0.00 46.51 3.58
645 661 4.770874 CCCAACGGGTGCTACGGG 62.771 72.222 0.00 0.00 38.25 5.28
647 663 4.388499 CAACGGGTGCTACGGGCT 62.388 66.667 4.43 0.00 42.39 5.19
648 664 4.388499 AACGGGTGCTACGGGCTG 62.388 66.667 0.00 0.00 42.39 4.85
650 666 4.077184 CGGGTGCTACGGGCTGAA 62.077 66.667 0.00 0.00 42.39 3.02
651 667 2.349755 GGGTGCTACGGGCTGAAA 59.650 61.111 0.00 0.00 42.39 2.69
652 668 2.038837 GGGTGCTACGGGCTGAAAC 61.039 63.158 0.00 0.00 42.39 2.78
653 669 2.038837 GGTGCTACGGGCTGAAACC 61.039 63.158 0.00 0.00 42.39 3.27
662 678 3.793144 GCTGAAACCGAGGCGCAG 61.793 66.667 10.83 0.00 0.00 5.18
663 679 2.048222 CTGAAACCGAGGCGCAGA 60.048 61.111 10.83 0.00 0.00 4.26
664 680 2.048222 TGAAACCGAGGCGCAGAG 60.048 61.111 10.83 0.00 0.00 3.35
665 681 2.815647 GAAACCGAGGCGCAGAGG 60.816 66.667 10.83 11.46 0.00 3.69
666 682 3.296709 GAAACCGAGGCGCAGAGGA 62.297 63.158 18.84 0.00 0.00 3.71
667 683 2.579684 GAAACCGAGGCGCAGAGGAT 62.580 60.000 18.84 6.28 0.00 3.24
668 684 2.579684 AAACCGAGGCGCAGAGGATC 62.580 60.000 18.84 2.25 0.00 3.36
681 697 1.863267 GAGGATCTGCGTTGGATCAG 58.137 55.000 13.31 0.00 40.74 2.90
682 698 0.467384 AGGATCTGCGTTGGATCAGG 59.533 55.000 13.31 0.00 40.74 3.86
683 699 1.162800 GGATCTGCGTTGGATCAGGC 61.163 60.000 13.31 0.00 40.74 4.85
684 700 1.493950 GATCTGCGTTGGATCAGGCG 61.494 60.000 0.00 0.00 39.30 5.52
688 704 3.499737 CGTTGGATCAGGCGCACC 61.500 66.667 10.83 4.77 0.00 5.01
701 717 4.082523 GCACCTACCTCGGCTGCA 62.083 66.667 0.50 0.00 33.87 4.41
702 718 2.185350 CACCTACCTCGGCTGCAG 59.815 66.667 10.11 10.11 0.00 4.41
703 719 3.775654 ACCTACCTCGGCTGCAGC 61.776 66.667 30.88 30.88 41.14 5.25
704 720 3.465403 CCTACCTCGGCTGCAGCT 61.465 66.667 35.82 19.83 41.70 4.24
706 722 4.457496 TACCTCGGCTGCAGCTGC 62.457 66.667 37.56 31.89 46.62 5.25
714 730 4.383861 CTGCAGCTGCCTCCGACA 62.384 66.667 34.64 14.22 41.18 4.35
715 731 4.383861 TGCAGCTGCCTCCGACAG 62.384 66.667 34.64 0.00 41.18 3.51
720 736 2.898738 CTGCCTCCGACAGCATCT 59.101 61.111 0.00 0.00 38.56 2.90
721 737 1.521010 CTGCCTCCGACAGCATCTG 60.521 63.158 0.00 0.00 38.56 2.90
731 747 2.706339 ACAGCATCTGTCTTGGATCC 57.294 50.000 4.20 4.20 41.21 3.36
732 748 1.911357 ACAGCATCTGTCTTGGATCCA 59.089 47.619 11.44 11.44 41.21 3.41
733 749 2.093075 ACAGCATCTGTCTTGGATCCAG 60.093 50.000 15.53 9.55 41.21 3.86
734 750 1.134159 AGCATCTGTCTTGGATCCAGC 60.134 52.381 15.53 12.19 0.00 4.85
735 751 1.579698 CATCTGTCTTGGATCCAGCG 58.420 55.000 15.53 10.51 0.00 5.18
736 752 0.179062 ATCTGTCTTGGATCCAGCGC 60.179 55.000 15.53 0.00 0.00 5.92
737 753 2.125552 TGTCTTGGATCCAGCGCG 60.126 61.111 15.53 0.00 0.00 6.86
738 754 2.125512 GTCTTGGATCCAGCGCGT 60.126 61.111 15.53 0.00 0.00 6.01
739 755 2.167861 GTCTTGGATCCAGCGCGTC 61.168 63.158 15.53 0.00 0.00 5.19
740 756 2.185350 CTTGGATCCAGCGCGTCT 59.815 61.111 15.53 1.94 0.00 4.18
741 757 2.125552 TTGGATCCAGCGCGTCTG 60.126 61.111 15.53 19.36 42.49 3.51
742 758 4.819761 TGGATCCAGCGCGTCTGC 62.820 66.667 11.44 10.50 41.50 4.26
762 778 4.838152 CGGGATCCGGTGTGGCTG 62.838 72.222 11.10 0.00 44.15 4.85
764 780 4.408821 GGATCCGGTGTGGCTGCA 62.409 66.667 0.00 0.00 37.80 4.41
765 781 2.821366 GATCCGGTGTGGCTGCAG 60.821 66.667 10.11 10.11 37.80 4.41
771 787 4.996434 GTGTGGCTGCAGCGTCCT 62.996 66.667 31.19 0.00 43.26 3.85
772 788 4.687215 TGTGGCTGCAGCGTCCTC 62.687 66.667 31.19 17.94 43.26 3.71
773 789 4.385405 GTGGCTGCAGCGTCCTCT 62.385 66.667 31.19 0.00 43.26 3.69
774 790 4.074526 TGGCTGCAGCGTCCTCTC 62.075 66.667 31.19 16.48 43.26 3.20
775 791 4.828925 GGCTGCAGCGTCCTCTCC 62.829 72.222 31.19 11.96 43.26 3.71
777 793 4.504916 CTGCAGCGTCCTCTCCGG 62.505 72.222 0.00 0.00 0.00 5.14
780 796 2.835431 CAGCGTCCTCTCCGGGAT 60.835 66.667 0.00 0.00 37.73 3.85
781 797 2.519780 AGCGTCCTCTCCGGGATC 60.520 66.667 0.00 0.00 37.73 3.36
782 798 2.833582 GCGTCCTCTCCGGGATCA 60.834 66.667 0.00 0.00 37.73 2.92
783 799 2.423898 GCGTCCTCTCCGGGATCAA 61.424 63.158 0.00 0.00 37.73 2.57
920 946 6.771188 AATCTACATATAGCTGAACGTTGC 57.229 37.500 5.00 3.52 0.00 4.17
923 949 2.936498 ACATATAGCTGAACGTTGCCAC 59.064 45.455 5.00 0.00 0.00 5.01
924 950 2.018542 TATAGCTGAACGTTGCCACC 57.981 50.000 5.00 0.00 0.00 4.61
927 953 0.320771 AGCTGAACGTTGCCACCTAG 60.321 55.000 5.00 0.00 0.00 3.02
928 954 1.912371 GCTGAACGTTGCCACCTAGC 61.912 60.000 5.00 0.26 0.00 3.42
934 960 1.163420 CGTTGCCACCTAGCACAACA 61.163 55.000 12.71 0.00 43.97 3.33
942 968 3.320541 CCACCTAGCACAACATGGAAAAA 59.679 43.478 0.00 0.00 0.00 1.94
943 969 4.549458 CACCTAGCACAACATGGAAAAAG 58.451 43.478 0.00 0.00 0.00 2.27
944 970 3.005791 ACCTAGCACAACATGGAAAAAGC 59.994 43.478 0.00 0.00 0.00 3.51
945 971 3.005684 CCTAGCACAACATGGAAAAAGCA 59.994 43.478 0.00 0.00 0.00 3.91
947 973 4.075963 AGCACAACATGGAAAAAGCATT 57.924 36.364 0.00 0.00 0.00 3.56
948 974 5.212532 AGCACAACATGGAAAAAGCATTA 57.787 34.783 0.00 0.00 0.00 1.90
949 975 5.232463 AGCACAACATGGAAAAAGCATTAG 58.768 37.500 0.00 0.00 0.00 1.73
953 979 2.166254 ACATGGAAAAAGCATTAGCCCG 59.834 45.455 0.00 0.00 43.56 6.13
954 980 1.917872 TGGAAAAAGCATTAGCCCGT 58.082 45.000 0.00 0.00 43.56 5.28
955 981 1.816224 TGGAAAAAGCATTAGCCCGTC 59.184 47.619 0.00 0.00 43.56 4.79
959 985 1.090052 AAAGCATTAGCCCGTCTCGC 61.090 55.000 0.00 0.00 43.56 5.03
1017 1060 1.519246 CATGCCTCGCTTCTCCTCA 59.481 57.895 0.00 0.00 0.00 3.86
1030 1073 1.303236 TCCTCAACCACGCCAATGG 60.303 57.895 0.00 0.00 46.10 3.16
1534 1613 2.675056 GCTCTGGACGTGCTGCTTG 61.675 63.158 8.99 3.21 0.00 4.01
1852 1931 1.896660 GCGGTCAGGGTGCTGAAAA 60.897 57.895 0.00 0.00 34.88 2.29
1954 2033 5.235831 AGCAAAGAAGCTGCAGAAATTTTTC 59.764 36.000 20.43 10.13 44.66 2.29
1988 2067 0.779997 AAGGGCCTGAAACCTGACAT 59.220 50.000 6.92 0.00 37.13 3.06
1992 2071 1.079503 GCCTGAAACCTGACATCGTC 58.920 55.000 0.00 0.00 0.00 4.20
1995 2074 2.254459 CTGAAACCTGACATCGTCTCG 58.746 52.381 0.00 0.00 33.15 4.04
1998 2077 2.915738 AACCTGACATCGTCTCGTAC 57.084 50.000 0.00 0.00 33.15 3.67
1999 2078 1.817357 ACCTGACATCGTCTCGTACA 58.183 50.000 0.00 0.00 33.15 2.90
2000 2079 1.738350 ACCTGACATCGTCTCGTACAG 59.262 52.381 0.00 0.00 33.15 2.74
2003 2082 3.242349 CCTGACATCGTCTCGTACAGTAC 60.242 52.174 0.00 0.00 33.15 2.73
2007 2086 3.617706 ACATCGTCTCGTACAGTACTCTG 59.382 47.826 9.10 0.00 46.18 3.35
2013 2092 3.436015 TCTCGTACAGTACTCTGCTTCAC 59.564 47.826 9.10 0.00 44.77 3.18
2048 2127 6.459257 CGAAGGATGCTTAGTTGATATGAC 57.541 41.667 0.00 0.00 0.00 3.06
2215 2294 5.600484 CCAGATCTAGTCACCTATTCAACCT 59.400 44.000 0.00 0.00 0.00 3.50
2229 2308 8.850156 ACCTATTCAACCTTAATACATGCATTC 58.150 33.333 0.00 0.00 0.00 2.67
2314 2393 2.872245 CGACCGGATGCATCTGTTTATT 59.128 45.455 29.25 11.52 0.00 1.40
2359 2438 2.562298 ACACATGGCGATTTGGTGAAAT 59.438 40.909 0.00 0.00 34.29 2.17
2400 2479 1.448985 TGAGGAACAAAGGTATGCGC 58.551 50.000 0.00 0.00 0.00 6.09
2416 2495 1.347707 TGCGCCCTCCTGATATTAAGG 59.652 52.381 4.18 0.00 36.02 2.69
2427 2506 6.759272 TCCTGATATTAAGGTCTTCCATTCG 58.241 40.000 5.55 0.00 36.14 3.34
2428 2507 5.934625 CCTGATATTAAGGTCTTCCATTCGG 59.065 44.000 0.00 0.00 35.89 4.30
2429 2508 5.305585 TGATATTAAGGTCTTCCATTCGGC 58.694 41.667 0.00 0.00 35.89 5.54
2430 2509 2.018542 TTAAGGTCTTCCATTCGGCG 57.981 50.000 0.00 0.00 35.89 6.46
2464 2543 1.543871 GCACGGAAGGAAGGGTAACAA 60.544 52.381 0.00 0.00 39.74 2.83
2551 2630 1.781786 ACTGATCGGTGGATACTGCT 58.218 50.000 6.33 0.00 31.51 4.24
2559 2638 2.223829 CGGTGGATACTGCTTAGTCTGG 60.224 54.545 0.00 0.00 37.61 3.86
2608 2687 7.984422 TTTGATGATATGGTGTCATATGGTC 57.016 36.000 2.13 0.00 44.20 4.02
2695 2774 5.192927 ACGATGGGCTGATTCTATTCAAAA 58.807 37.500 0.00 0.00 0.00 2.44
2696 2775 5.066505 ACGATGGGCTGATTCTATTCAAAAC 59.933 40.000 0.00 0.00 0.00 2.43
2775 2854 3.410631 TTATTTCTGGCTGGACGAACA 57.589 42.857 0.00 0.00 0.00 3.18
2840 2919 6.426980 AGTAAGTGTGTGCATTGATACATG 57.573 37.500 0.00 0.00 0.00 3.21
2867 2946 8.197592 TCTATAGTTCTTGGTGGACTTTGTAA 57.802 34.615 0.00 0.00 0.00 2.41
3017 3096 6.038714 GCTAAGGATTTGTTTGCTGCTATACT 59.961 38.462 0.00 0.00 0.00 2.12
3103 3434 2.224402 GGTTCAGTGGAAGAAGCTGACT 60.224 50.000 0.00 0.00 38.76 3.41
3126 3457 9.751542 GACTATCTTTTCTTATCGATGGAGAAA 57.248 33.333 23.66 23.66 37.56 2.52
3239 3570 5.532406 TGTCTAAAGTTGATGCAAAGAGCTT 59.468 36.000 0.00 0.00 45.94 3.74
3240 3571 6.039717 TGTCTAAAGTTGATGCAAAGAGCTTT 59.960 34.615 0.00 0.19 45.94 3.51
3464 3828 9.871238 TCTGTATGTAAATAGGAAGTCAGTTTC 57.129 33.333 0.00 0.00 0.00 2.78
3549 3954 0.180171 AGGCCTGCCAAAACAAAACC 59.820 50.000 3.11 0.00 38.92 3.27
3550 3955 0.107459 GGCCTGCCAAAACAAAACCA 60.107 50.000 2.58 0.00 35.81 3.67
3576 3981 4.704540 TCAAAACTCAAACAGAAGGAGCAA 59.295 37.500 0.00 0.00 31.88 3.91
3577 3982 4.907879 AAACTCAAACAGAAGGAGCAAG 57.092 40.909 0.00 0.00 31.88 4.01
3579 3984 4.363991 ACTCAAACAGAAGGAGCAAGAT 57.636 40.909 0.00 0.00 31.88 2.40
3580 3985 4.723309 ACTCAAACAGAAGGAGCAAGATT 58.277 39.130 0.00 0.00 31.88 2.40
3581 3986 4.518211 ACTCAAACAGAAGGAGCAAGATTG 59.482 41.667 0.00 0.00 31.88 2.67
3609 4018 1.550327 AGCTGTACAGTCTGCTAGCA 58.450 50.000 23.44 18.22 39.97 3.49
3645 4057 2.510906 GTCAGGCGGGGCATGTAT 59.489 61.111 2.05 0.00 41.32 2.29
3671 4083 3.949313 CGTCTAAGCGCCTTTGTTC 57.051 52.632 2.29 0.00 0.00 3.18
3775 4188 3.213206 TCATTTTCAGCCGCCAGATAT 57.787 42.857 0.00 0.00 0.00 1.63
3799 4215 4.991056 GCATGGTCAGATTAATTAGCGAGA 59.009 41.667 0.00 0.00 0.00 4.04
3819 4235 0.389025 GTGCCCCTTTTGTCTGGTTG 59.611 55.000 0.00 0.00 0.00 3.77
3828 4244 4.829492 CCTTTTGTCTGGTTGGAGAAAGAT 59.171 41.667 0.00 0.00 31.77 2.40
3831 4247 6.391227 TTTGTCTGGTTGGAGAAAGATTTC 57.609 37.500 0.00 0.00 37.45 2.17
3864 4280 1.301716 GCAACAGGAGCTTGACCGA 60.302 57.895 0.00 0.00 0.00 4.69
3907 4334 7.148239 CCAGTTTGAGGTTAGTTAATCATGGTC 60.148 40.741 0.00 0.00 0.00 4.02
3937 4364 3.179048 GTGTTTTGTTGACTGTTGAGGC 58.821 45.455 0.00 0.00 0.00 4.70
3949 4376 5.808540 TGACTGTTGAGGCGTAATATGTTAC 59.191 40.000 2.43 2.43 37.44 2.50
3974 4401 2.883386 CCAAGCTCTTGATGATTAGGGC 59.117 50.000 10.94 0.00 42.93 5.19
3995 4422 1.001378 GACCTGTGAAGCACGCAAATT 60.001 47.619 0.00 0.00 38.59 1.82
3996 4423 2.225491 GACCTGTGAAGCACGCAAATTA 59.775 45.455 0.00 0.00 38.59 1.40
3999 4426 2.979813 CTGTGAAGCACGCAAATTAACC 59.020 45.455 0.00 0.00 38.59 2.85
4000 4427 2.621055 TGTGAAGCACGCAAATTAACCT 59.379 40.909 0.00 0.00 37.14 3.50
4001 4428 3.234386 GTGAAGCACGCAAATTAACCTC 58.766 45.455 0.00 0.00 0.00 3.85
4003 4430 3.058293 TGAAGCACGCAAATTAACCTCTG 60.058 43.478 0.00 0.00 0.00 3.35
4004 4431 2.778299 AGCACGCAAATTAACCTCTGA 58.222 42.857 0.00 0.00 0.00 3.27
4012 4467 9.139174 CACGCAAATTAACCTCTGAATTATTTT 57.861 29.630 0.00 0.00 0.00 1.82
4025 4480 8.340618 TCTGAATTATTTTTGCAGCTTCTAGT 57.659 30.769 0.00 0.00 0.00 2.57
4027 4482 8.109705 TGAATTATTTTTGCAGCTTCTAGTCA 57.890 30.769 0.00 0.00 0.00 3.41
4035 4490 2.489329 GCAGCTTCTAGTCATTTTGCCA 59.511 45.455 0.00 0.00 0.00 4.92
4036 4491 3.057315 GCAGCTTCTAGTCATTTTGCCAA 60.057 43.478 0.00 0.00 0.00 4.52
4042 4610 2.159327 AGTCATTTTGCCAAGCTTGC 57.841 45.000 21.43 16.17 0.00 4.01
4063 4631 4.766891 TGCCTAGTTATTTTTGCAGCTTCT 59.233 37.500 0.00 0.00 0.00 2.85
4068 4636 7.334421 CCTAGTTATTTTTGCAGCTTCTAGTCA 59.666 37.037 0.00 0.00 0.00 3.41
4070 4638 8.115490 AGTTATTTTTGCAGCTTCTAGTCATT 57.885 30.769 0.00 0.00 0.00 2.57
4071 4639 8.579863 AGTTATTTTTGCAGCTTCTAGTCATTT 58.420 29.630 0.00 0.00 0.00 2.32
4072 4640 9.196552 GTTATTTTTGCAGCTTCTAGTCATTTT 57.803 29.630 0.00 0.00 0.00 1.82
4073 4641 7.647907 ATTTTTGCAGCTTCTAGTCATTTTG 57.352 32.000 0.00 0.00 0.00 2.44
4075 4643 2.489329 TGCAGCTTCTAGTCATTTTGCC 59.511 45.455 0.00 0.00 0.00 4.52
4076 4644 2.489329 GCAGCTTCTAGTCATTTTGCCA 59.511 45.455 0.00 0.00 0.00 4.92
4077 4645 3.057315 GCAGCTTCTAGTCATTTTGCCAA 60.057 43.478 0.00 0.00 0.00 4.52
4078 4646 4.730657 CAGCTTCTAGTCATTTTGCCAAG 58.269 43.478 0.00 0.00 0.00 3.61
4079 4647 3.192212 AGCTTCTAGTCATTTTGCCAAGC 59.808 43.478 0.00 0.00 36.15 4.01
4080 4648 3.192212 GCTTCTAGTCATTTTGCCAAGCT 59.808 43.478 0.00 0.00 33.68 3.74
4081 4649 4.321527 GCTTCTAGTCATTTTGCCAAGCTT 60.322 41.667 0.00 0.00 33.68 3.74
4082 4650 4.771590 TCTAGTCATTTTGCCAAGCTTG 57.228 40.909 19.93 19.93 0.00 4.01
4083 4651 2.159327 AGTCATTTTGCCAAGCTTGC 57.841 45.000 21.43 16.17 0.00 4.01
4084 4652 1.150827 GTCATTTTGCCAAGCTTGCC 58.849 50.000 21.43 11.17 0.00 4.52
4085 4653 1.050204 TCATTTTGCCAAGCTTGCCT 58.950 45.000 21.43 0.00 0.00 4.75
4086 4654 2.029110 GTCATTTTGCCAAGCTTGCCTA 60.029 45.455 21.43 3.89 0.00 3.93
4087 4655 2.231964 TCATTTTGCCAAGCTTGCCTAG 59.768 45.455 21.43 8.47 0.00 3.02
4088 4656 1.703411 TTTTGCCAAGCTTGCCTAGT 58.297 45.000 21.43 0.00 0.00 2.57
4089 4657 1.703411 TTTGCCAAGCTTGCCTAGTT 58.297 45.000 21.43 0.00 0.00 2.24
4090 4658 2.577606 TTGCCAAGCTTGCCTAGTTA 57.422 45.000 21.43 0.00 0.00 2.24
4091 4659 2.806945 TGCCAAGCTTGCCTAGTTAT 57.193 45.000 21.43 0.00 0.00 1.89
4092 4660 3.085952 TGCCAAGCTTGCCTAGTTATT 57.914 42.857 21.43 0.00 0.00 1.40
4093 4661 3.430453 TGCCAAGCTTGCCTAGTTATTT 58.570 40.909 21.43 0.00 0.00 1.40
4094 4662 3.831911 TGCCAAGCTTGCCTAGTTATTTT 59.168 39.130 21.43 0.00 0.00 1.82
4095 4663 4.283212 TGCCAAGCTTGCCTAGTTATTTTT 59.717 37.500 21.43 0.00 0.00 1.94
4096 4664 4.627035 GCCAAGCTTGCCTAGTTATTTTTG 59.373 41.667 21.43 3.20 0.00 2.44
4097 4665 4.627035 CCAAGCTTGCCTAGTTATTTTTGC 59.373 41.667 21.43 0.00 0.00 3.68
4098 4666 5.229423 CAAGCTTGCCTAGTTATTTTTGCA 58.771 37.500 14.65 0.00 0.00 4.08
4099 4667 5.064441 AGCTTGCCTAGTTATTTTTGCAG 57.936 39.130 0.00 0.00 0.00 4.41
4100 4668 3.614176 GCTTGCCTAGTTATTTTTGCAGC 59.386 43.478 0.00 0.00 0.00 5.25
4101 4669 4.619160 GCTTGCCTAGTTATTTTTGCAGCT 60.619 41.667 0.00 0.00 0.00 4.24
4102 4670 5.467035 TTGCCTAGTTATTTTTGCAGCTT 57.533 34.783 0.00 0.00 0.00 3.74
4103 4671 5.059404 TGCCTAGTTATTTTTGCAGCTTC 57.941 39.130 0.00 0.00 0.00 3.86
4104 4672 4.766891 TGCCTAGTTATTTTTGCAGCTTCT 59.233 37.500 0.00 0.00 0.00 2.85
4105 4673 5.943416 TGCCTAGTTATTTTTGCAGCTTCTA 59.057 36.000 0.00 0.00 0.00 2.10
4106 4674 6.094048 TGCCTAGTTATTTTTGCAGCTTCTAG 59.906 38.462 0.00 0.00 0.00 2.43
4107 4675 6.094186 GCCTAGTTATTTTTGCAGCTTCTAGT 59.906 38.462 0.00 0.00 0.00 2.57
4108 4676 7.677511 GCCTAGTTATTTTTGCAGCTTCTAGTC 60.678 40.741 0.00 0.00 0.00 2.59
4109 4677 7.334421 CCTAGTTATTTTTGCAGCTTCTAGTCA 59.666 37.037 0.00 0.00 0.00 3.41
4110 4678 7.693969 AGTTATTTTTGCAGCTTCTAGTCAT 57.306 32.000 0.00 0.00 0.00 3.06
4124 4692 7.335422 AGCTTCTAGTCATTTTTCCATGTACAG 59.665 37.037 0.33 0.00 0.00 2.74
4140 4708 6.356556 CATGTACAGGTTTTATGGATCCAGA 58.643 40.000 21.33 13.69 0.00 3.86
4142 4710 6.356556 TGTACAGGTTTTATGGATCCAGATG 58.643 40.000 21.33 12.61 0.00 2.90
4143 4711 5.456921 ACAGGTTTTATGGATCCAGATGT 57.543 39.130 21.33 13.28 0.00 3.06
4144 4712 5.195940 ACAGGTTTTATGGATCCAGATGTG 58.804 41.667 21.33 12.55 0.00 3.21
4159 4748 4.402474 CCAGATGTGGTAGTCTGTATGTGA 59.598 45.833 0.00 0.00 40.12 3.58
4181 4770 7.879677 TGTGATGGCATTTAATATGAGGTCTAG 59.120 37.037 0.00 0.00 0.00 2.43
4195 4784 7.663043 ATGAGGTCTAGAGGTTTAGTTAAGG 57.337 40.000 0.00 0.00 0.00 2.69
4196 4785 6.797707 TGAGGTCTAGAGGTTTAGTTAAGGA 58.202 40.000 0.00 0.00 0.00 3.36
4198 4787 7.560626 TGAGGTCTAGAGGTTTAGTTAAGGATC 59.439 40.741 0.00 0.00 0.00 3.36
4208 4797 3.695830 AGTTAAGGATCGGTCTGCAAA 57.304 42.857 0.00 0.00 0.00 3.68
4226 4817 6.200665 TCTGCAAATTTTTGGTTTTGATCGAG 59.799 34.615 5.28 0.00 38.57 4.04
4240 4831 0.322816 ATCGAGGCAGCACCATGTTT 60.323 50.000 0.00 0.00 43.14 2.83
4264 4856 6.872628 AGTTTAACCTGTAACTTGGCTTAC 57.127 37.500 0.00 0.00 30.72 2.34
4267 4859 4.448720 AACCTGTAACTTGGCTTACCTT 57.551 40.909 0.00 0.00 36.63 3.50
4314 4906 4.564782 ATCACAATATCGATGGCCTCAT 57.435 40.909 8.54 0.00 36.09 2.90
4315 4907 4.356405 TCACAATATCGATGGCCTCATT 57.644 40.909 8.54 0.00 32.98 2.57
4316 4908 4.067192 TCACAATATCGATGGCCTCATTG 58.933 43.478 8.54 11.08 36.36 2.82
4318 4910 4.276678 CACAATATCGATGGCCTCATTGTT 59.723 41.667 15.83 3.65 35.12 2.83
4321 4913 5.695851 ATATCGATGGCCTCATTGTTTTC 57.304 39.130 8.54 0.00 36.42 2.29
4324 4916 3.826157 TCGATGGCCTCATTGTTTTCTTT 59.174 39.130 3.32 0.00 36.42 2.52
4325 4917 4.280677 TCGATGGCCTCATTGTTTTCTTTT 59.719 37.500 3.32 0.00 36.42 2.27
4326 4918 5.475220 TCGATGGCCTCATTGTTTTCTTTTA 59.525 36.000 3.32 0.00 36.42 1.52
4327 4919 5.572896 CGATGGCCTCATTGTTTTCTTTTAC 59.427 40.000 3.32 0.00 32.98 2.01
4328 4920 5.860941 TGGCCTCATTGTTTTCTTTTACA 57.139 34.783 3.32 0.00 0.00 2.41
4356 4948 7.439955 TGAATTAAACATACTCTGTGTTGTCGT 59.560 33.333 0.00 0.00 39.57 4.34
4357 4949 7.724305 ATTAAACATACTCTGTGTTGTCGTT 57.276 32.000 0.00 0.00 39.57 3.85
4358 4950 5.403897 AAACATACTCTGTGTTGTCGTTG 57.596 39.130 0.00 0.00 39.57 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
234 238 1.072965 GCCCCCATGATCAGAAGTAGG 59.927 57.143 0.09 0.00 0.00 3.18
402 418 3.743396 GCGGTAGAGGACAAATCATCATC 59.257 47.826 0.00 0.00 38.14 2.92
403 419 3.134623 TGCGGTAGAGGACAAATCATCAT 59.865 43.478 0.00 0.00 38.14 2.45
404 420 2.499693 TGCGGTAGAGGACAAATCATCA 59.500 45.455 0.00 0.00 38.14 3.07
405 421 2.866762 GTGCGGTAGAGGACAAATCATC 59.133 50.000 0.00 0.00 35.82 2.92
406 422 2.420129 GGTGCGGTAGAGGACAAATCAT 60.420 50.000 0.00 0.00 33.93 2.45
407 423 1.066430 GGTGCGGTAGAGGACAAATCA 60.066 52.381 0.00 0.00 33.93 2.57
408 424 1.066430 TGGTGCGGTAGAGGACAAATC 60.066 52.381 0.00 0.00 33.93 2.17
409 425 0.981183 TGGTGCGGTAGAGGACAAAT 59.019 50.000 0.00 0.00 33.93 2.32
410 426 0.320374 CTGGTGCGGTAGAGGACAAA 59.680 55.000 0.00 0.00 33.93 2.83
411 427 0.541063 TCTGGTGCGGTAGAGGACAA 60.541 55.000 0.00 0.00 33.93 3.18
412 428 0.324368 ATCTGGTGCGGTAGAGGACA 60.324 55.000 0.00 0.00 33.93 4.02
413 429 1.688772 TATCTGGTGCGGTAGAGGAC 58.311 55.000 0.00 0.00 0.00 3.85
414 430 2.029623 GTTATCTGGTGCGGTAGAGGA 58.970 52.381 0.00 0.00 0.00 3.71
415 431 1.269102 CGTTATCTGGTGCGGTAGAGG 60.269 57.143 0.00 0.00 0.00 3.69
416 432 1.674441 TCGTTATCTGGTGCGGTAGAG 59.326 52.381 0.00 0.00 0.00 2.43
417 433 1.674441 CTCGTTATCTGGTGCGGTAGA 59.326 52.381 0.00 0.00 0.00 2.59
418 434 1.269102 CCTCGTTATCTGGTGCGGTAG 60.269 57.143 0.00 0.00 0.00 3.18
419 435 0.742505 CCTCGTTATCTGGTGCGGTA 59.257 55.000 0.00 0.00 0.00 4.02
420 436 1.255667 ACCTCGTTATCTGGTGCGGT 61.256 55.000 0.00 0.00 32.16 5.68
421 437 0.527817 GACCTCGTTATCTGGTGCGG 60.528 60.000 0.00 0.00 33.74 5.69
422 438 0.172578 TGACCTCGTTATCTGGTGCG 59.827 55.000 0.00 0.00 33.74 5.34
423 439 1.204941 ACTGACCTCGTTATCTGGTGC 59.795 52.381 0.00 0.00 33.74 5.01
424 440 2.417379 CCACTGACCTCGTTATCTGGTG 60.417 54.545 0.00 0.00 33.74 4.17
425 441 1.825474 CCACTGACCTCGTTATCTGGT 59.175 52.381 0.00 0.00 36.70 4.00
426 442 1.471676 GCCACTGACCTCGTTATCTGG 60.472 57.143 0.00 0.00 0.00 3.86
427 443 1.204704 TGCCACTGACCTCGTTATCTG 59.795 52.381 0.00 0.00 0.00 2.90
428 444 1.204941 GTGCCACTGACCTCGTTATCT 59.795 52.381 0.00 0.00 0.00 1.98
429 445 1.641577 GTGCCACTGACCTCGTTATC 58.358 55.000 0.00 0.00 0.00 1.75
430 446 0.249398 GGTGCCACTGACCTCGTTAT 59.751 55.000 0.00 0.00 0.00 1.89
431 447 1.669440 GGTGCCACTGACCTCGTTA 59.331 57.895 0.00 0.00 0.00 3.18
432 448 2.426023 GGTGCCACTGACCTCGTT 59.574 61.111 0.00 0.00 0.00 3.85
433 449 3.991051 CGGTGCCACTGACCTCGT 61.991 66.667 0.00 0.00 0.00 4.18
435 451 3.941657 GAGCGGTGCCACTGACCTC 62.942 68.421 8.12 1.58 0.00 3.85
436 452 4.008933 GAGCGGTGCCACTGACCT 62.009 66.667 8.12 0.00 0.00 3.85
438 454 4.008933 AGGAGCGGTGCCACTGAC 62.009 66.667 8.12 0.20 0.00 3.51
439 455 4.007644 CAGGAGCGGTGCCACTGA 62.008 66.667 8.12 0.00 35.70 3.41
442 458 4.767255 CTCCAGGAGCGGTGCCAC 62.767 72.222 2.60 0.00 0.00 5.01
450 466 4.828925 GCTGTCGCCTCCAGGAGC 62.829 72.222 11.57 5.91 37.39 4.70
451 467 4.504916 CGCTGTCGCCTCCAGGAG 62.505 72.222 9.90 9.90 37.39 3.69
490 506 4.742201 CGTCTGTGGGCCCTGACG 62.742 72.222 33.38 33.38 45.68 4.35
491 507 4.394712 CCGTCTGTGGGCCCTGAC 62.395 72.222 25.70 24.57 0.00 3.51
516 532 4.994471 TGTGGCTGAGTGCGCTGG 62.994 66.667 3.44 0.00 44.05 4.85
517 533 3.420606 CTGTGGCTGAGTGCGCTG 61.421 66.667 3.44 0.00 44.05 5.18
518 534 4.694233 CCTGTGGCTGAGTGCGCT 62.694 66.667 9.73 0.00 44.05 5.92
519 535 4.687215 TCCTGTGGCTGAGTGCGC 62.687 66.667 0.00 0.00 44.05 6.09
520 536 2.433838 CTCCTGTGGCTGAGTGCG 60.434 66.667 0.00 0.00 44.05 5.34
521 537 2.046507 CCTCCTGTGGCTGAGTGC 60.047 66.667 0.00 0.00 41.94 4.40
522 538 2.667418 CCCTCCTGTGGCTGAGTG 59.333 66.667 0.00 0.00 0.00 3.51
523 539 3.325753 GCCCTCCTGTGGCTGAGT 61.326 66.667 0.00 0.00 45.70 3.41
560 576 3.801997 ATCTGGCGGCTTGGGGAG 61.802 66.667 11.43 0.00 0.00 4.30
561 577 4.113815 CATCTGGCGGCTTGGGGA 62.114 66.667 11.43 1.19 0.00 4.81
579 595 3.094062 TATGTGGAGAGGGCTGCGC 62.094 63.158 8.86 8.86 42.55 6.09
580 596 1.227380 GTATGTGGAGAGGGCTGCG 60.227 63.158 0.00 0.00 34.84 5.18
581 597 1.147153 GGTATGTGGAGAGGGCTGC 59.853 63.158 0.00 0.00 0.00 5.25
582 598 0.467384 CTGGTATGTGGAGAGGGCTG 59.533 60.000 0.00 0.00 0.00 4.85
583 599 1.341156 GCTGGTATGTGGAGAGGGCT 61.341 60.000 0.00 0.00 0.00 5.19
584 600 1.147153 GCTGGTATGTGGAGAGGGC 59.853 63.158 0.00 0.00 0.00 5.19
585 601 1.443407 CGCTGGTATGTGGAGAGGG 59.557 63.158 0.00 0.00 0.00 4.30
586 602 1.443407 CCGCTGGTATGTGGAGAGG 59.557 63.158 0.00 0.00 39.82 3.69
587 603 1.443407 CCCGCTGGTATGTGGAGAG 59.557 63.158 0.00 0.00 39.82 3.20
588 604 2.731571 GCCCGCTGGTATGTGGAGA 61.732 63.158 0.00 0.00 39.82 3.71
589 605 2.203070 GCCCGCTGGTATGTGGAG 60.203 66.667 0.00 0.00 39.82 3.86
590 606 3.792736 GGCCCGCTGGTATGTGGA 61.793 66.667 0.00 0.00 39.82 4.02
591 607 3.636929 TTGGCCCGCTGGTATGTGG 62.637 63.158 0.00 0.00 37.35 4.17
592 608 2.045438 TTGGCCCGCTGGTATGTG 60.045 61.111 0.00 0.00 0.00 3.21
593 609 2.045340 GTTGGCCCGCTGGTATGT 60.045 61.111 0.00 0.00 0.00 2.29
594 610 3.202001 CGTTGGCCCGCTGGTATG 61.202 66.667 0.00 0.00 0.00 2.39
595 611 4.483243 CCGTTGGCCCGCTGGTAT 62.483 66.667 0.00 0.00 0.00 2.73
602 618 3.702048 TTCTCCTCCGTTGGCCCG 61.702 66.667 0.00 0.00 0.00 6.13
603 619 2.046217 GTTCTCCTCCGTTGGCCC 60.046 66.667 0.00 0.00 0.00 5.80
604 620 2.046217 GGTTCTCCTCCGTTGGCC 60.046 66.667 0.00 0.00 0.00 5.36
605 621 1.376037 CTGGTTCTCCTCCGTTGGC 60.376 63.158 0.00 0.00 34.23 4.52
606 622 1.296715 CCTGGTTCTCCTCCGTTGG 59.703 63.158 0.00 0.00 34.23 3.77
607 623 0.320771 CACCTGGTTCTCCTCCGTTG 60.321 60.000 0.00 0.00 34.23 4.10
608 624 1.481056 CCACCTGGTTCTCCTCCGTT 61.481 60.000 0.00 0.00 34.23 4.44
609 625 1.913762 CCACCTGGTTCTCCTCCGT 60.914 63.158 0.00 0.00 34.23 4.69
610 626 2.982130 CCACCTGGTTCTCCTCCG 59.018 66.667 0.00 0.00 34.23 4.63
611 627 2.671682 GCCACCTGGTTCTCCTCC 59.328 66.667 0.00 0.00 37.57 4.30
612 628 2.671682 GGCCACCTGGTTCTCCTC 59.328 66.667 0.00 0.00 37.57 3.71
613 629 2.936032 GGGCCACCTGGTTCTCCT 60.936 66.667 4.39 0.00 37.57 3.69
614 630 2.840753 TTGGGCCACCTGGTTCTCC 61.841 63.158 5.23 0.00 37.76 3.71
615 631 1.603739 GTTGGGCCACCTGGTTCTC 60.604 63.158 5.23 0.00 37.76 2.87
616 632 2.520968 GTTGGGCCACCTGGTTCT 59.479 61.111 5.23 0.00 37.76 3.01
617 633 2.983592 CGTTGGGCCACCTGGTTC 60.984 66.667 5.23 0.00 37.76 3.62
618 634 4.596585 CCGTTGGGCCACCTGGTT 62.597 66.667 5.23 0.00 37.76 3.67
638 654 1.810030 CTCGGTTTCAGCCCGTAGC 60.810 63.158 0.00 0.00 45.63 3.58
639 655 1.153628 CCTCGGTTTCAGCCCGTAG 60.154 63.158 0.00 0.00 45.63 3.51
640 656 2.975536 CCTCGGTTTCAGCCCGTA 59.024 61.111 0.00 0.00 45.63 4.02
641 657 4.699522 GCCTCGGTTTCAGCCCGT 62.700 66.667 0.00 0.00 45.63 5.28
645 661 3.793144 CTGCGCCTCGGTTTCAGC 61.793 66.667 4.18 0.00 0.00 4.26
646 662 2.048222 TCTGCGCCTCGGTTTCAG 60.048 61.111 4.18 0.00 0.00 3.02
647 663 2.048222 CTCTGCGCCTCGGTTTCA 60.048 61.111 4.18 0.00 0.00 2.69
648 664 2.579684 ATCCTCTGCGCCTCGGTTTC 62.580 60.000 4.18 0.00 0.00 2.78
649 665 2.579684 GATCCTCTGCGCCTCGGTTT 62.580 60.000 4.18 0.00 0.00 3.27
650 666 3.077556 ATCCTCTGCGCCTCGGTT 61.078 61.111 4.18 0.00 0.00 4.44
651 667 3.532155 GATCCTCTGCGCCTCGGT 61.532 66.667 4.18 0.00 0.00 4.69
652 668 3.222855 AGATCCTCTGCGCCTCGG 61.223 66.667 4.18 1.65 0.00 4.63
653 669 2.027314 CAGATCCTCTGCGCCTCG 59.973 66.667 4.18 0.00 37.72 4.63
660 676 1.137675 TGATCCAACGCAGATCCTCTG 59.862 52.381 7.28 0.00 46.90 3.35
661 677 1.411977 CTGATCCAACGCAGATCCTCT 59.588 52.381 7.28 0.00 39.56 3.69
662 678 1.539929 CCTGATCCAACGCAGATCCTC 60.540 57.143 7.28 0.00 39.56 3.71
663 679 0.467384 CCTGATCCAACGCAGATCCT 59.533 55.000 7.28 0.00 39.56 3.24
664 680 1.162800 GCCTGATCCAACGCAGATCC 61.163 60.000 7.28 0.00 39.56 3.36
665 681 1.493950 CGCCTGATCCAACGCAGATC 61.494 60.000 0.00 3.61 40.51 2.75
666 682 1.522355 CGCCTGATCCAACGCAGAT 60.522 57.895 0.00 0.00 34.06 2.90
667 683 2.125552 CGCCTGATCCAACGCAGA 60.126 61.111 0.00 0.00 34.06 4.26
671 687 2.572095 TAGGTGCGCCTGATCCAACG 62.572 60.000 29.26 0.00 46.47 4.10
672 688 1.090052 GTAGGTGCGCCTGATCCAAC 61.090 60.000 29.26 13.90 46.47 3.77
673 689 1.220749 GTAGGTGCGCCTGATCCAA 59.779 57.895 29.26 4.33 46.47 3.53
674 690 2.731571 GGTAGGTGCGCCTGATCCA 61.732 63.158 29.26 5.18 46.47 3.41
675 691 2.109181 GGTAGGTGCGCCTGATCC 59.891 66.667 29.26 22.04 46.47 3.36
676 692 1.068250 GAGGTAGGTGCGCCTGATC 59.932 63.158 29.26 18.51 46.47 2.92
677 693 2.786495 CGAGGTAGGTGCGCCTGAT 61.786 63.158 29.26 14.04 46.47 2.90
678 694 3.449227 CGAGGTAGGTGCGCCTGA 61.449 66.667 29.26 10.09 46.47 3.86
679 695 4.514577 CCGAGGTAGGTGCGCCTG 62.515 72.222 29.26 11.37 46.47 4.85
684 700 4.082523 TGCAGCCGAGGTAGGTGC 62.083 66.667 7.93 7.93 38.16 5.01
685 701 2.185350 CTGCAGCCGAGGTAGGTG 59.815 66.667 0.00 0.00 0.00 4.00
686 702 3.775654 GCTGCAGCCGAGGTAGGT 61.776 66.667 28.76 0.00 34.31 3.08
687 703 3.465403 AGCTGCAGCCGAGGTAGG 61.465 66.667 34.39 0.00 43.38 3.18
688 704 2.202851 CAGCTGCAGCCGAGGTAG 60.203 66.667 34.39 12.23 43.38 3.18
689 705 4.457496 GCAGCTGCAGCCGAGGTA 62.457 66.667 34.39 0.00 43.38 3.08
697 713 4.383861 TGTCGGAGGCAGCTGCAG 62.384 66.667 37.63 24.78 36.97 4.41
704 720 2.285773 ACAGATGCTGTCGGAGGCA 61.286 57.895 7.80 7.80 41.21 4.75
705 721 2.581354 ACAGATGCTGTCGGAGGC 59.419 61.111 0.00 0.00 41.21 4.70
713 729 2.562635 CTGGATCCAAGACAGATGCTG 58.437 52.381 17.00 0.00 37.52 4.41
714 730 1.134159 GCTGGATCCAAGACAGATGCT 60.134 52.381 17.00 0.00 33.60 3.79
715 731 1.307097 GCTGGATCCAAGACAGATGC 58.693 55.000 17.00 9.26 34.21 3.91
716 732 1.579698 CGCTGGATCCAAGACAGATG 58.420 55.000 17.00 2.23 34.21 2.90
717 733 0.179062 GCGCTGGATCCAAGACAGAT 60.179 55.000 17.00 0.00 34.21 2.90
718 734 1.219124 GCGCTGGATCCAAGACAGA 59.781 57.895 17.00 0.00 34.21 3.41
719 735 2.169789 CGCGCTGGATCCAAGACAG 61.170 63.158 17.00 4.62 35.40 3.51
720 736 2.125552 CGCGCTGGATCCAAGACA 60.126 61.111 17.00 0.00 0.00 3.41
721 737 2.125512 ACGCGCTGGATCCAAGAC 60.126 61.111 17.00 7.44 0.00 3.01
722 738 2.184322 GACGCGCTGGATCCAAGA 59.816 61.111 17.00 0.00 0.00 3.02
723 739 2.169789 CAGACGCGCTGGATCCAAG 61.170 63.158 17.00 13.81 41.07 3.61
724 740 2.125552 CAGACGCGCTGGATCCAA 60.126 61.111 17.00 0.00 41.07 3.53
725 741 4.819761 GCAGACGCGCTGGATCCA 62.820 66.667 24.76 15.27 45.03 3.41
726 742 4.521062 AGCAGACGCGCTGGATCC 62.521 66.667 24.76 4.20 45.03 3.36
737 753 4.899239 CCGGATCCCGCAGCAGAC 62.899 72.222 6.06 0.00 46.86 3.51
742 758 4.838152 CCACACCGGATCCCGCAG 62.838 72.222 9.46 0.00 46.86 5.18
747 763 4.408821 TGCAGCCACACCGGATCC 62.409 66.667 9.46 0.00 36.56 3.36
748 764 2.821366 CTGCAGCCACACCGGATC 60.821 66.667 9.46 0.00 36.56 3.36
754 770 4.996434 AGGACGCTGCAGCCACAC 62.996 66.667 32.07 19.37 37.91 3.82
755 771 4.687215 GAGGACGCTGCAGCCACA 62.687 66.667 32.07 0.00 37.91 4.17
756 772 4.385405 AGAGGACGCTGCAGCCAC 62.385 66.667 32.07 24.12 37.91 5.01
757 773 4.074526 GAGAGGACGCTGCAGCCA 62.075 66.667 32.07 0.00 37.91 4.75
758 774 4.828925 GGAGAGGACGCTGCAGCC 62.829 72.222 32.07 19.16 37.91 4.85
760 776 4.504916 CCGGAGAGGACGCTGCAG 62.505 72.222 10.11 10.11 45.00 4.41
763 779 2.835431 ATCCCGGAGAGGACGCTG 60.835 66.667 0.73 0.00 45.00 5.18
764 780 2.519780 GATCCCGGAGAGGACGCT 60.520 66.667 0.73 0.00 45.00 5.07
765 781 1.749334 ATTGATCCCGGAGAGGACGC 61.749 60.000 0.73 0.00 45.00 5.19
766 782 0.753262 AATTGATCCCGGAGAGGACG 59.247 55.000 0.73 0.00 45.00 4.79
767 783 2.043227 AGAATTGATCCCGGAGAGGAC 58.957 52.381 0.73 0.00 45.00 3.85
768 784 2.478872 AGAATTGATCCCGGAGAGGA 57.521 50.000 0.73 0.00 45.00 3.71
769 785 2.564947 CCTAGAATTGATCCCGGAGAGG 59.435 54.545 0.73 0.00 40.63 3.69
770 786 2.564947 CCCTAGAATTGATCCCGGAGAG 59.435 54.545 0.73 0.00 0.00 3.20
771 787 2.609747 CCCTAGAATTGATCCCGGAGA 58.390 52.381 0.73 0.00 0.00 3.71
772 788 1.002544 GCCCTAGAATTGATCCCGGAG 59.997 57.143 0.73 0.00 0.00 4.63
773 789 1.056660 GCCCTAGAATTGATCCCGGA 58.943 55.000 0.73 0.00 0.00 5.14
774 790 1.059913 AGCCCTAGAATTGATCCCGG 58.940 55.000 0.00 0.00 0.00 5.73
775 791 2.498167 CAAGCCCTAGAATTGATCCCG 58.502 52.381 0.00 0.00 0.00 5.14
776 792 2.234143 GCAAGCCCTAGAATTGATCCC 58.766 52.381 0.00 0.00 0.00 3.85
777 793 2.936202 TGCAAGCCCTAGAATTGATCC 58.064 47.619 0.00 0.00 0.00 3.36
778 794 3.950395 AGTTGCAAGCCCTAGAATTGATC 59.050 43.478 0.00 0.00 0.00 2.92
779 795 3.973425 AGTTGCAAGCCCTAGAATTGAT 58.027 40.909 0.00 0.00 0.00 2.57
780 796 3.439857 AGTTGCAAGCCCTAGAATTGA 57.560 42.857 0.00 0.00 0.00 2.57
781 797 5.643379 TTTAGTTGCAAGCCCTAGAATTG 57.357 39.130 0.00 0.00 0.00 2.32
782 798 6.857437 AATTTAGTTGCAAGCCCTAGAATT 57.143 33.333 0.00 5.05 0.00 2.17
783 799 6.857437 AAATTTAGTTGCAAGCCCTAGAAT 57.143 33.333 0.00 0.00 0.00 2.40
847 863 9.082313 GGTCTCATATGGATTTATTCAAACCAT 57.918 33.333 2.13 0.00 38.25 3.55
896 922 6.202954 GGCAACGTTCAGCTATATGTAGATTT 59.797 38.462 10.07 0.00 0.00 2.17
900 926 4.209288 GTGGCAACGTTCAGCTATATGTAG 59.791 45.833 10.07 0.00 42.51 2.74
901 927 4.116961 GTGGCAACGTTCAGCTATATGTA 58.883 43.478 10.07 0.00 42.51 2.29
905 931 1.553248 AGGTGGCAACGTTCAGCTATA 59.447 47.619 17.16 0.73 39.56 1.31
906 932 0.324943 AGGTGGCAACGTTCAGCTAT 59.675 50.000 17.16 0.00 39.56 2.97
908 934 0.320771 CTAGGTGGCAACGTTCAGCT 60.321 55.000 20.88 20.88 43.13 4.24
910 936 0.602638 TGCTAGGTGGCAACGTTCAG 60.603 55.000 0.00 0.00 39.43 3.02
914 940 1.147376 TTGTGCTAGGTGGCAACGT 59.853 52.632 0.00 0.00 44.18 3.99
916 942 1.068333 CATGTTGTGCTAGGTGGCAAC 60.068 52.381 0.00 0.00 44.18 4.17
917 943 1.246649 CATGTTGTGCTAGGTGGCAA 58.753 50.000 0.00 0.00 44.18 4.52
919 945 0.322456 TCCATGTTGTGCTAGGTGGC 60.322 55.000 0.00 0.00 0.00 5.01
920 946 2.198827 TTCCATGTTGTGCTAGGTGG 57.801 50.000 0.00 0.00 0.00 4.61
923 949 3.005684 TGCTTTTTCCATGTTGTGCTAGG 59.994 43.478 0.00 0.00 0.00 3.02
924 950 4.241590 TGCTTTTTCCATGTTGTGCTAG 57.758 40.909 0.00 0.00 0.00 3.42
927 953 4.143052 GCTAATGCTTTTTCCATGTTGTGC 60.143 41.667 0.00 0.00 36.03 4.57
928 954 4.389687 GGCTAATGCTTTTTCCATGTTGTG 59.610 41.667 0.00 0.00 39.59 3.33
934 960 2.427095 GACGGGCTAATGCTTTTTCCAT 59.573 45.455 0.00 0.00 39.59 3.41
942 968 2.107141 GCGAGACGGGCTAATGCT 59.893 61.111 0.00 0.00 39.59 3.79
943 969 2.967615 GGCGAGACGGGCTAATGC 60.968 66.667 0.00 0.00 38.76 3.56
944 970 1.300233 GAGGCGAGACGGGCTAATG 60.300 63.158 0.00 0.00 43.66 1.90
945 971 2.499827 GGAGGCGAGACGGGCTAAT 61.500 63.158 0.00 0.00 43.66 1.73
959 985 2.439701 TGTACTCGGAGCGGGAGG 60.440 66.667 4.58 0.00 35.82 4.30
965 991 1.023502 GTAGGTCCTGTACTCGGAGC 58.976 60.000 19.68 19.68 46.67 4.70
1852 1931 8.747538 GGTATAATACCCTGACTTGTCATTTT 57.252 34.615 3.79 0.00 43.18 1.82
1954 2033 0.754217 CCCTTCATGGCCATGGAGTG 60.754 60.000 40.04 31.44 41.79 3.51
1988 2067 1.998315 GCAGAGTACTGTACGAGACGA 59.002 52.381 11.97 0.00 45.04 4.20
1992 2071 3.725305 CGTGAAGCAGAGTACTGTACGAG 60.725 52.174 11.97 7.46 45.04 4.18
1995 2074 2.415625 CCCGTGAAGCAGAGTACTGTAC 60.416 54.545 9.93 9.93 45.04 2.90
1998 2077 0.603569 ACCCGTGAAGCAGAGTACTG 59.396 55.000 0.00 0.00 45.91 2.74
1999 2078 2.211250 TACCCGTGAAGCAGAGTACT 57.789 50.000 0.00 0.00 0.00 2.73
2000 2079 2.810650 CATACCCGTGAAGCAGAGTAC 58.189 52.381 0.00 0.00 0.00 2.73
2003 2082 0.811616 GGCATACCCGTGAAGCAGAG 60.812 60.000 0.00 0.00 0.00 3.35
2007 2086 2.112815 GGTGGCATACCCGTGAAGC 61.113 63.158 0.00 0.00 44.15 3.86
2048 2127 9.611284 CTCTAGTCATCGAATTGAAGAGATTAG 57.389 37.037 10.35 0.00 34.58 1.73
2064 2143 4.381079 GGCCGAATACCATCTCTAGTCATC 60.381 50.000 0.00 0.00 0.00 2.92
2229 2308 2.749621 GTCCAACCTACCATTTCTGCAG 59.250 50.000 7.63 7.63 0.00 4.41
2234 2313 2.354821 GCATCGTCCAACCTACCATTTC 59.645 50.000 0.00 0.00 0.00 2.17
2238 2317 0.249120 CAGCATCGTCCAACCTACCA 59.751 55.000 0.00 0.00 0.00 3.25
2359 2438 7.039784 CCTCATTTCAGTAACCAATTCCTTTGA 60.040 37.037 0.00 0.00 37.53 2.69
2400 2479 4.907875 TGGAAGACCTTAATATCAGGAGGG 59.092 45.833 7.74 0.00 35.14 4.30
2416 2495 1.089481 TGCATCGCCGAATGGAAGAC 61.089 55.000 0.00 0.00 37.49 3.01
2427 2506 0.815213 TGCATAGGTTCTGCATCGCC 60.815 55.000 0.00 0.00 44.30 5.54
2428 2507 2.694065 TGCATAGGTTCTGCATCGC 58.306 52.632 0.00 0.00 44.30 4.58
2464 2543 2.505819 AGTCAAGGATATCCCGTGCTTT 59.494 45.455 18.56 1.90 43.06 3.51
2551 2630 3.389329 GCATCCTCCATCTTCCAGACTAA 59.611 47.826 0.00 0.00 0.00 2.24
2559 2638 5.587388 TTTTTGATGCATCCTCCATCTTC 57.413 39.130 23.67 0.00 39.76 2.87
2740 2819 6.888632 GCCAGAAATAATCCATCCAGTATGAT 59.111 38.462 0.00 0.00 39.69 2.45
2775 2854 4.725790 AAACTTCTCTTTTGCAGCAACT 57.274 36.364 7.54 0.00 0.00 3.16
2840 2919 5.346181 AAGTCCACCAAGAACTATAGAGC 57.654 43.478 6.78 0.00 0.00 4.09
3239 3570 7.540745 GTGAAACAGTTTTAGCTTCAAGTGAAA 59.459 33.333 15.79 0.00 36.32 2.69
3240 3571 7.027161 GTGAAACAGTTTTAGCTTCAAGTGAA 58.973 34.615 15.79 0.00 36.32 3.18
3321 3652 5.488341 TCCAGAAACTGATACTTTGTAGGC 58.512 41.667 0.00 0.00 32.44 3.93
3387 3722 3.692101 CCCATGGCAAACGATACAAGTTA 59.308 43.478 6.09 0.00 0.00 2.24
3399 3751 0.971959 GCAGATGGACCCATGGCAAA 60.972 55.000 6.09 0.00 36.70 3.68
3464 3828 3.186001 GCATCATCCTGATAGCTTGTTCG 59.814 47.826 0.00 0.00 34.28 3.95
3549 3954 6.199719 GCTCCTTCTGTTTGAGTTTTGATTTG 59.800 38.462 0.00 0.00 0.00 2.32
3550 3955 6.127366 TGCTCCTTCTGTTTGAGTTTTGATTT 60.127 34.615 0.00 0.00 0.00 2.17
3645 4057 2.434185 CGCTTAGACGCCAGCCAA 60.434 61.111 0.00 0.00 31.82 4.52
3669 4081 0.396139 GCCATGGATGCTGGAAGGAA 60.396 55.000 18.40 0.00 38.32 3.36
3670 4082 1.228228 GCCATGGATGCTGGAAGGA 59.772 57.895 18.40 0.00 40.11 3.36
3671 4083 0.396695 AAGCCATGGATGCTGGAAGG 60.397 55.000 18.40 0.00 39.48 3.46
3702 4115 4.398319 ACAGGAATTGGTTGACTCGATTT 58.602 39.130 0.00 0.00 0.00 2.17
3775 4188 4.702831 TCGCTAATTAATCTGACCATGCA 58.297 39.130 0.00 0.00 0.00 3.96
3799 4215 0.261696 AACCAGACAAAAGGGGCACT 59.738 50.000 0.00 0.00 0.00 4.40
3819 4235 4.932200 TCAGCTTCTTCGAAATCTTTCTCC 59.068 41.667 0.00 0.00 35.07 3.71
3864 4280 0.468226 TGGCTTCGGTGAGAACAAGT 59.532 50.000 0.00 0.00 34.66 3.16
3937 4364 5.466728 AGAGCTTGGCATGTAACATATTACG 59.533 40.000 2.12 0.00 43.23 3.18
3949 4376 4.023107 CCTAATCATCAAGAGCTTGGCATG 60.023 45.833 10.09 7.71 40.78 4.06
3974 4401 1.771073 TTTGCGTGCTTCACAGGTCG 61.771 55.000 0.00 0.00 36.51 4.79
3988 4415 9.956797 CAAAAATAATTCAGAGGTTAATTTGCG 57.043 29.630 0.00 0.00 0.00 4.85
3995 4422 7.466746 AGCTGCAAAAATAATTCAGAGGTTA 57.533 32.000 1.02 0.00 0.00 2.85
3996 4423 6.350629 AGCTGCAAAAATAATTCAGAGGTT 57.649 33.333 1.02 0.00 0.00 3.50
3999 4426 8.457261 ACTAGAAGCTGCAAAAATAATTCAGAG 58.543 33.333 1.02 0.00 0.00 3.35
4000 4427 8.340618 ACTAGAAGCTGCAAAAATAATTCAGA 57.659 30.769 1.02 0.00 0.00 3.27
4001 4428 8.239314 TGACTAGAAGCTGCAAAAATAATTCAG 58.761 33.333 1.02 0.00 0.00 3.02
4003 4430 9.578439 AATGACTAGAAGCTGCAAAAATAATTC 57.422 29.630 1.02 0.00 0.00 2.17
4004 4431 9.933723 AAATGACTAGAAGCTGCAAAAATAATT 57.066 25.926 1.02 0.00 0.00 1.40
4012 4467 3.057315 GGCAAAATGACTAGAAGCTGCAA 60.057 43.478 1.02 0.00 0.00 4.08
4035 4490 5.467035 TGCAAAAATAACTAGGCAAGCTT 57.533 34.783 0.00 0.00 0.00 3.74
4036 4491 4.619160 GCTGCAAAAATAACTAGGCAAGCT 60.619 41.667 0.00 0.00 0.00 3.74
4042 4610 7.334421 TGACTAGAAGCTGCAAAAATAACTAGG 59.666 37.037 1.02 0.00 32.11 3.02
4063 4631 3.302365 GCAAGCTTGGCAAAATGACTA 57.698 42.857 27.10 0.00 0.00 2.59
4075 4643 5.229423 TGCAAAAATAACTAGGCAAGCTTG 58.771 37.500 22.44 22.44 0.00 4.01
4076 4644 5.467035 TGCAAAAATAACTAGGCAAGCTT 57.533 34.783 0.00 0.00 0.00 3.74
4077 4645 4.619160 GCTGCAAAAATAACTAGGCAAGCT 60.619 41.667 0.00 0.00 0.00 3.74
4078 4646 3.614176 GCTGCAAAAATAACTAGGCAAGC 59.386 43.478 0.00 0.00 0.00 4.01
4079 4647 5.064441 AGCTGCAAAAATAACTAGGCAAG 57.936 39.130 1.02 0.00 0.00 4.01
4080 4648 5.243730 AGAAGCTGCAAAAATAACTAGGCAA 59.756 36.000 1.02 0.00 0.00 4.52
4081 4649 4.766891 AGAAGCTGCAAAAATAACTAGGCA 59.233 37.500 1.02 0.00 0.00 4.75
4082 4650 5.316327 AGAAGCTGCAAAAATAACTAGGC 57.684 39.130 1.02 0.00 0.00 3.93
4083 4651 7.334421 TGACTAGAAGCTGCAAAAATAACTAGG 59.666 37.037 1.02 0.00 32.11 3.02
4084 4652 8.256611 TGACTAGAAGCTGCAAAAATAACTAG 57.743 34.615 1.02 0.00 0.00 2.57
4085 4653 8.792830 ATGACTAGAAGCTGCAAAAATAACTA 57.207 30.769 1.02 0.00 0.00 2.24
4086 4654 7.693969 ATGACTAGAAGCTGCAAAAATAACT 57.306 32.000 1.02 0.00 0.00 2.24
4087 4655 8.748380 AAATGACTAGAAGCTGCAAAAATAAC 57.252 30.769 1.02 0.00 0.00 1.89
4088 4656 9.762933 AAAAATGACTAGAAGCTGCAAAAATAA 57.237 25.926 1.02 0.00 0.00 1.40
4089 4657 9.410556 GAAAAATGACTAGAAGCTGCAAAAATA 57.589 29.630 1.02 0.00 0.00 1.40
4090 4658 7.386025 GGAAAAATGACTAGAAGCTGCAAAAAT 59.614 33.333 1.02 0.00 0.00 1.82
4091 4659 6.701400 GGAAAAATGACTAGAAGCTGCAAAAA 59.299 34.615 1.02 0.00 0.00 1.94
4092 4660 6.183360 TGGAAAAATGACTAGAAGCTGCAAAA 60.183 34.615 1.02 0.00 0.00 2.44
4093 4661 5.301551 TGGAAAAATGACTAGAAGCTGCAAA 59.698 36.000 1.02 0.00 0.00 3.68
4094 4662 4.826733 TGGAAAAATGACTAGAAGCTGCAA 59.173 37.500 1.02 0.00 0.00 4.08
4095 4663 4.397420 TGGAAAAATGACTAGAAGCTGCA 58.603 39.130 1.02 0.00 0.00 4.41
4096 4664 5.105997 ACATGGAAAAATGACTAGAAGCTGC 60.106 40.000 0.00 0.00 0.00 5.25
4097 4665 6.506500 ACATGGAAAAATGACTAGAAGCTG 57.493 37.500 0.00 0.00 0.00 4.24
4098 4666 7.168219 TGTACATGGAAAAATGACTAGAAGCT 58.832 34.615 0.00 0.00 0.00 3.74
4099 4667 7.377766 TGTACATGGAAAAATGACTAGAAGC 57.622 36.000 0.00 0.00 0.00 3.86
4100 4668 7.607991 ACCTGTACATGGAAAAATGACTAGAAG 59.392 37.037 15.59 0.00 0.00 2.85
4101 4669 7.458397 ACCTGTACATGGAAAAATGACTAGAA 58.542 34.615 15.59 0.00 0.00 2.10
4102 4670 7.016153 ACCTGTACATGGAAAAATGACTAGA 57.984 36.000 15.59 0.00 0.00 2.43
4103 4671 7.687941 AACCTGTACATGGAAAAATGACTAG 57.312 36.000 15.59 0.00 0.00 2.57
4104 4672 8.472007 AAAACCTGTACATGGAAAAATGACTA 57.528 30.769 15.59 0.00 0.00 2.59
4105 4673 6.976934 AAACCTGTACATGGAAAAATGACT 57.023 33.333 15.59 0.00 0.00 3.41
4106 4674 9.139174 CATAAAACCTGTACATGGAAAAATGAC 57.861 33.333 15.59 0.00 0.00 3.06
4107 4675 8.310382 CCATAAAACCTGTACATGGAAAAATGA 58.690 33.333 15.59 0.00 38.77 2.57
4108 4676 8.310382 TCCATAAAACCTGTACATGGAAAAATG 58.690 33.333 15.59 12.56 41.61 2.32
4109 4677 8.429237 TCCATAAAACCTGTACATGGAAAAAT 57.571 30.769 15.59 4.34 41.61 1.82
4110 4678 7.841282 TCCATAAAACCTGTACATGGAAAAA 57.159 32.000 15.59 2.66 41.61 1.94
4124 4692 4.536765 ACCACATCTGGATCCATAAAACC 58.463 43.478 16.63 0.00 40.55 3.27
4140 4708 4.443457 GCCATCACATACAGACTACCACAT 60.443 45.833 0.00 0.00 0.00 3.21
4142 4710 3.118775 TGCCATCACATACAGACTACCAC 60.119 47.826 0.00 0.00 0.00 4.16
4143 4711 3.103742 TGCCATCACATACAGACTACCA 58.896 45.455 0.00 0.00 0.00 3.25
4144 4712 3.819564 TGCCATCACATACAGACTACC 57.180 47.619 0.00 0.00 0.00 3.18
4159 4748 7.238514 ACCTCTAGACCTCATATTAAATGCCAT 59.761 37.037 0.00 0.00 0.00 4.40
4181 4770 5.349809 CAGACCGATCCTTAACTAAACCTC 58.650 45.833 0.00 0.00 0.00 3.85
4192 4781 4.559153 CAAAAATTTGCAGACCGATCCTT 58.441 39.130 0.00 0.00 0.00 3.36
4195 4784 3.913089 ACCAAAAATTTGCAGACCGATC 58.087 40.909 0.29 0.00 36.86 3.69
4196 4785 4.335400 AACCAAAAATTTGCAGACCGAT 57.665 36.364 0.29 0.00 36.86 4.18
4198 4787 4.331168 TCAAAACCAAAAATTTGCAGACCG 59.669 37.500 0.29 0.00 36.66 4.79
4208 4797 4.559153 CTGCCTCGATCAAAACCAAAAAT 58.441 39.130 0.00 0.00 0.00 1.82
4226 4817 4.234574 GTTAAACTAAACATGGTGCTGCC 58.765 43.478 0.00 0.00 37.90 4.85
4240 4831 6.936335 GGTAAGCCAAGTTACAGGTTAAACTA 59.064 38.462 0.00 0.00 34.91 2.24
4264 4856 3.249320 CGATAACACCAGCATGATCAAGG 59.751 47.826 0.00 2.29 39.69 3.61
4267 4859 2.158914 AGCGATAACACCAGCATGATCA 60.159 45.455 0.00 0.00 39.69 2.92
4326 4918 9.897744 CAACACAGAGTATGTTTAATTCAATGT 57.102 29.630 0.00 0.00 41.41 2.71
4327 4919 9.897744 ACAACACAGAGTATGTTTAATTCAATG 57.102 29.630 0.00 0.00 41.41 2.82
4339 4931 5.234329 AGTTTCAACGACAACACAGAGTATG 59.766 40.000 0.00 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.