Multiple sequence alignment - TraesCS1D01G032700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G032700 chr1D 100.000 3852 0 0 1 3852 13040194 13044045 0.000000e+00 7114.0
1 TraesCS1D01G032700 chr1D 97.500 40 1 0 3288 3327 13043329 13043368 6.910000e-08 69.4
2 TraesCS1D01G032700 chr1D 97.500 40 1 0 3136 3175 13043481 13043520 6.910000e-08 69.4
3 TraesCS1D01G032700 chr1A 93.876 3364 155 22 342 3684 14519204 14522537 0.000000e+00 5024.0
4 TraesCS1D01G032700 chr1A 97.297 185 4 1 3655 3839 14522539 14522722 2.890000e-81 313.0
5 TraesCS1D01G032700 chr1A 95.028 181 8 1 3 183 14517392 14517571 2.270000e-72 283.0
6 TraesCS1D01G032700 chr1A 97.561 41 1 0 3135 3175 14522137 14522177 1.920000e-08 71.3
7 TraesCS1D01G032700 chr1B 93.678 3195 144 22 3 3175 18388671 18385513 0.000000e+00 4728.0
8 TraesCS1D01G032700 chr1B 96.250 400 12 1 3288 3684 18385552 18385153 0.000000e+00 652.0
9 TraesCS1D01G032700 chr1B 95.676 185 7 1 3655 3839 18385151 18384968 2.910000e-76 296.0
10 TraesCS1D01G032700 chr1B 93.750 160 9 1 3 162 18390700 18390542 4.970000e-59 239.0
11 TraesCS1D01G032700 chr7A 79.259 270 50 3 1173 1439 420843311 420843045 2.360000e-42 183.0
12 TraesCS1D01G032700 chr7D 83.957 187 30 0 1253 1439 374571921 374571735 3.060000e-41 180.0
13 TraesCS1D01G032700 chr7B 83.957 187 30 0 1253 1439 369416947 369416761 3.060000e-41 180.0
14 TraesCS1D01G032700 chr5A 84.277 159 23 2 2499 2656 693633297 693633140 1.850000e-33 154.0
15 TraesCS1D01G032700 chr4D 84.277 159 23 2 2499 2656 508264948 508264791 1.850000e-33 154.0
16 TraesCS1D01G032700 chr4B 84.277 159 23 2 2499 2656 659583063 659583220 1.850000e-33 154.0
17 TraesCS1D01G032700 chr4B 83.648 159 24 2 2499 2656 656827858 656828015 8.620000e-32 148.0
18 TraesCS1D01G032700 chr3D 88.172 93 11 0 1575 1667 23230453 23230361 1.130000e-20 111.0
19 TraesCS1D01G032700 chr3A 76.585 205 42 6 1575 1776 32426758 32426959 1.460000e-19 108.0
20 TraesCS1D01G032700 chr3B 86.316 95 9 4 1575 1667 41015429 41015337 2.450000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G032700 chr1D 13040194 13044045 3851 False 2417.600 7114 98.333333 1 3852 3 chr1D.!!$F1 3851
1 TraesCS1D01G032700 chr1A 14517392 14522722 5330 False 1422.825 5024 95.940500 3 3839 4 chr1A.!!$F1 3836
2 TraesCS1D01G032700 chr1B 18384968 18390700 5732 True 1478.750 4728 94.838500 3 3839 4 chr1B.!!$R1 3836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 4515 0.380733 TCCATCCATCGTCGTCTTCG 59.619 55.0 0.00 0.00 38.55 3.79 F
983 4520 0.453950 CCATCGTCGTCTTCGTTCGT 60.454 55.0 0.00 0.00 37.07 3.85 F
2281 5832 0.248012 TCTTCTTCGTTGGCGCCATA 59.752 50.0 33.25 18.58 38.14 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 5652 1.279496 CCATCTTCACCTCCTCCACA 58.721 55.000 0.0 0.0 0.00 4.17 R
2521 6072 1.320344 TGTAGATGAACGCCTCGCCT 61.320 55.000 0.0 0.0 0.00 5.52 R
3170 6722 1.936547 GAGATGGCAAATCCTGTCGTC 59.063 52.381 0.0 0.0 44.71 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.624336 ATTGCATGTGGCTCTTGTGT 58.376 45.000 0.00 0.00 45.15 3.72
250 3533 8.915654 GTCTTATAAATGTTTTGAGCCAAACAG 58.084 33.333 11.01 0.00 32.79 3.16
377 3897 1.335810 TCGCACCGAGTGGACATATAC 59.664 52.381 6.23 0.00 39.21 1.47
381 3901 3.430374 GCACCGAGTGGACATATACAAGT 60.430 47.826 6.23 0.00 39.21 3.16
452 3977 4.380843 TGATCCTTTGCTTTGTCCCTAA 57.619 40.909 0.00 0.00 0.00 2.69
603 4128 4.245660 TGTTGAAGCTCCTAGAACATTCG 58.754 43.478 0.00 0.00 0.00 3.34
608 4133 2.028112 AGCTCCTAGAACATTCGTTGCA 60.028 45.455 0.00 0.00 34.75 4.08
684 4210 1.830477 GATCAGCAGTTCTCCTCCTGT 59.170 52.381 0.00 0.00 0.00 4.00
696 4222 1.289231 TCCTCCTGTGACCATCTAGCT 59.711 52.381 0.00 0.00 0.00 3.32
697 4223 2.514160 TCCTCCTGTGACCATCTAGCTA 59.486 50.000 0.00 0.00 0.00 3.32
698 4224 3.052869 TCCTCCTGTGACCATCTAGCTAA 60.053 47.826 0.00 0.00 0.00 3.09
699 4225 3.068873 CCTCCTGTGACCATCTAGCTAAC 59.931 52.174 0.00 0.00 0.00 2.34
700 4226 3.701542 CTCCTGTGACCATCTAGCTAACA 59.298 47.826 0.00 0.00 0.00 2.41
701 4227 3.447586 TCCTGTGACCATCTAGCTAACAC 59.552 47.826 0.00 0.00 0.00 3.32
702 4228 3.430929 CCTGTGACCATCTAGCTAACACC 60.431 52.174 0.00 0.00 0.00 4.16
704 4230 3.195610 TGTGACCATCTAGCTAACACCTG 59.804 47.826 0.00 0.00 0.00 4.00
705 4231 3.447586 GTGACCATCTAGCTAACACCTGA 59.552 47.826 0.00 0.00 0.00 3.86
706 4232 4.081642 GTGACCATCTAGCTAACACCTGAA 60.082 45.833 0.00 0.00 0.00 3.02
707 4233 4.716784 TGACCATCTAGCTAACACCTGAAT 59.283 41.667 0.00 0.00 0.00 2.57
708 4234 5.897250 TGACCATCTAGCTAACACCTGAATA 59.103 40.000 0.00 0.00 0.00 1.75
709 4235 6.163135 ACCATCTAGCTAACACCTGAATAC 57.837 41.667 0.00 0.00 0.00 1.89
710 4236 5.900123 ACCATCTAGCTAACACCTGAATACT 59.100 40.000 0.00 0.00 0.00 2.12
711 4237 7.067421 ACCATCTAGCTAACACCTGAATACTA 58.933 38.462 0.00 0.00 0.00 1.82
712 4238 7.730784 ACCATCTAGCTAACACCTGAATACTAT 59.269 37.037 0.00 0.00 0.00 2.12
713 4239 9.244292 CCATCTAGCTAACACCTGAATACTATA 57.756 37.037 0.00 0.00 0.00 1.31
762 4288 3.072468 CCACCATTGGCTGCCCTG 61.072 66.667 17.53 13.43 35.56 4.45
763 4289 3.766691 CACCATTGGCTGCCCTGC 61.767 66.667 17.53 0.00 0.00 4.85
825 4359 0.898320 CACGTCCCTCTCCATCACTT 59.102 55.000 0.00 0.00 0.00 3.16
949 4483 6.551601 TCTTCTTCCACTGGTATATTCTCCTC 59.448 42.308 0.00 0.00 0.00 3.71
971 4505 2.285827 GGATCGATCCATCCATCGTC 57.714 55.000 34.65 7.34 46.38 4.20
972 4506 1.468224 GGATCGATCCATCCATCGTCG 60.468 57.143 34.65 0.00 46.38 5.12
978 4515 0.380733 TCCATCCATCGTCGTCTTCG 59.619 55.000 0.00 0.00 38.55 3.79
983 4520 0.453950 CCATCGTCGTCTTCGTTCGT 60.454 55.000 0.00 0.00 37.07 3.85
1027 4568 1.401905 GTGATTGAGACCGGGAAATGC 59.598 52.381 6.32 0.00 0.00 3.56
1032 4575 1.207089 TGAGACCGGGAAATGCACTAG 59.793 52.381 6.32 0.00 0.00 2.57
1093 4644 1.733360 GTGTGTTTGTACGTGTGGTGT 59.267 47.619 0.00 0.00 0.00 4.16
1094 4645 1.732809 TGTGTTTGTACGTGTGGTGTG 59.267 47.619 0.00 0.00 0.00 3.82
1095 4646 1.062880 GTGTTTGTACGTGTGGTGTGG 59.937 52.381 0.00 0.00 0.00 4.17
1096 4647 1.338864 TGTTTGTACGTGTGGTGTGGT 60.339 47.619 0.00 0.00 0.00 4.16
1097 4648 1.062880 GTTTGTACGTGTGGTGTGGTG 59.937 52.381 0.00 0.00 0.00 4.17
1156 4707 3.332493 GAGCGACGACGGCAACCTA 62.332 63.158 9.67 0.00 40.15 3.08
1203 4754 4.722700 CCCGGCCAACAGGTCCAG 62.723 72.222 2.24 0.00 0.00 3.86
1375 4926 3.827752 GGCACCTCCTTCCTCCTT 58.172 61.111 0.00 0.00 0.00 3.36
1433 4984 2.109181 GCTACCTCACCATCGCCC 59.891 66.667 0.00 0.00 0.00 6.13
1567 5118 0.620030 TGCAGATGGGTGTGCTGTAT 59.380 50.000 0.00 0.00 44.42 2.29
1657 5208 0.454620 AGTTCGACGAGCACGATGAC 60.455 55.000 11.40 3.52 42.66 3.06
1703 5254 3.720949 TCTTCGACCGTTTCTTCTTCA 57.279 42.857 0.00 0.00 0.00 3.02
1714 5265 5.111989 CGTTTCTTCTTCATCATCAGCCTA 58.888 41.667 0.00 0.00 0.00 3.93
1882 5433 4.329545 AGCCCGGTCGTGCACATT 62.330 61.111 18.64 0.00 0.00 2.71
1900 5451 2.752238 CTCCAGGTCCTCGTCGCT 60.752 66.667 0.00 0.00 0.00 4.93
2011 5562 1.227853 GTTCCGGTGCTTGGACAGT 60.228 57.895 0.00 0.00 34.56 3.55
2089 5640 1.227853 GAACCCGTGGAAGCTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
2092 5643 1.071471 CCCGTGGAAGCTGTGTTCT 59.929 57.895 0.00 0.00 0.00 3.01
2101 5652 1.227556 GCTGTGTTCTGTGTCCCGT 60.228 57.895 0.00 0.00 0.00 5.28
2281 5832 0.248012 TCTTCTTCGTTGGCGCCATA 59.752 50.000 33.25 18.58 38.14 2.74
2500 6051 0.804364 GCGTGTTCATGCTGATTCCA 59.196 50.000 9.41 0.00 0.00 3.53
2638 6189 0.252284 TCTCCCTCGGCTTCTTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
2659 6210 3.137459 AGCGCCCTCGTCTCTCTG 61.137 66.667 2.29 0.00 38.14 3.35
2731 6282 4.279145 TCGATTACTTCTACTGGCTCCTT 58.721 43.478 0.00 0.00 0.00 3.36
2767 6318 3.633116 AACCTGGCCGCGTACCTT 61.633 61.111 15.50 0.54 0.00 3.50
2860 6411 1.399791 GAGAAATGCTAGCTGGTGCAC 59.600 52.381 17.23 8.80 42.26 4.57
2864 6415 1.960040 ATGCTAGCTGGTGCACGCTA 61.960 55.000 20.70 20.70 42.26 4.26
2865 6416 2.167861 GCTAGCTGGTGCACGCTAC 61.168 63.158 18.86 13.33 42.74 3.58
2866 6417 1.519455 CTAGCTGGTGCACGCTACC 60.519 63.158 18.86 3.02 42.74 3.18
2867 6418 3.350909 TAGCTGGTGCACGCTACCG 62.351 63.158 18.86 0.89 41.18 4.02
2882 6433 3.547413 CGCTACCGATCGTTCATTACTGA 60.547 47.826 15.09 0.00 36.29 3.41
2948 6499 2.093890 TCCATGTACGTCCGTATGTGT 58.906 47.619 2.56 0.00 32.82 3.72
3162 6714 5.027293 TGAGGATCATGGTTATCACACTG 57.973 43.478 0.00 0.00 42.56 3.66
3163 6715 4.716287 TGAGGATCATGGTTATCACACTGA 59.284 41.667 0.00 0.00 42.56 3.41
3164 6716 5.189539 TGAGGATCATGGTTATCACACTGAA 59.810 40.000 0.00 0.00 42.56 3.02
3165 6717 5.678583 AGGATCATGGTTATCACACTGAAG 58.321 41.667 0.00 0.00 0.00 3.02
3168 6720 7.047891 GGATCATGGTTATCACACTGAAGTTA 58.952 38.462 0.00 0.00 0.00 2.24
3170 6722 7.905604 TCATGGTTATCACACTGAAGTTAAG 57.094 36.000 0.00 0.00 0.00 1.85
3173 6725 5.924254 TGGTTATCACACTGAAGTTAAGACG 59.076 40.000 0.00 0.00 0.00 4.18
3178 6730 3.736252 CACACTGAAGTTAAGACGACAGG 59.264 47.826 0.00 0.00 37.77 4.00
3184 6736 4.451096 TGAAGTTAAGACGACAGGATTTGC 59.549 41.667 0.00 0.00 0.00 3.68
3187 6739 2.496899 AAGACGACAGGATTTGCCAT 57.503 45.000 0.00 0.00 40.02 4.40
3215 6767 6.206634 CCTACTTGATAAAGTTGCCACAGAAA 59.793 38.462 0.00 0.00 34.37 2.52
3283 6835 3.566742 CACTACCGTTTTATATTGCCCCC 59.433 47.826 0.00 0.00 0.00 5.40
3286 6838 3.824133 ACCGTTTTATATTGCCCCCTAC 58.176 45.455 0.00 0.00 0.00 3.18
3698 7284 6.431543 TGCAGTAATGAGCTAGAGTATAGGAC 59.568 42.308 0.00 0.00 0.00 3.85
3796 7382 9.029368 ATGAGTGTAGCATCTATATACACACAT 57.971 33.333 16.57 16.57 46.79 3.21
3844 7430 9.941325 TGTATTTTTAAATAGTCACTACCGGAA 57.059 29.630 9.46 0.00 31.94 4.30
3847 7433 7.760131 TTTTAAATAGTCACTACCGGAATCG 57.240 36.000 9.46 0.00 0.00 3.34
3848 7434 3.366440 AATAGTCACTACCGGAATCGC 57.634 47.619 9.46 0.00 34.56 4.58
3849 7435 1.753930 TAGTCACTACCGGAATCGCA 58.246 50.000 9.46 0.00 34.56 5.10
3850 7436 0.172803 AGTCACTACCGGAATCGCAC 59.827 55.000 9.46 0.00 34.56 5.34
3851 7437 0.804933 GTCACTACCGGAATCGCACC 60.805 60.000 9.46 0.00 34.56 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.960113 TGCAATATGAGGTAAAATTTGCGT 58.040 33.333 0.00 0.00 0.00 5.24
1 2 6.476380 ACATGCAATATGAGGTAAAATTTGCG 59.524 34.615 0.00 0.00 0.00 4.85
226 3509 8.243289 CCTGTTTGGCTCAAAACATTTATAAG 57.757 34.615 11.47 2.01 46.12 1.73
250 3533 1.663379 GGAACCCATTGCGTAAGGCC 61.663 60.000 0.00 0.00 42.61 5.19
258 3541 6.534793 CACATAAAATACAAGGAACCCATTGC 59.465 38.462 0.00 0.00 0.00 3.56
377 3897 4.631377 TCACATGCTAATTCTTCGGACTTG 59.369 41.667 0.00 0.00 0.00 3.16
381 3901 6.567687 TTTTTCACATGCTAATTCTTCGGA 57.432 33.333 0.00 0.00 0.00 4.55
543 4068 1.067212 CCTCCTTCCCACTAACGATCG 59.933 57.143 14.88 14.88 0.00 3.69
603 4128 0.877743 GAGGGAGTTCAGCTTGCAAC 59.122 55.000 0.00 0.00 0.00 4.17
608 4133 2.614259 TGAGAAGAGGGAGTTCAGCTT 58.386 47.619 0.00 0.00 0.00 3.74
684 4210 3.708451 TCAGGTGTTAGCTAGATGGTCA 58.292 45.455 0.00 0.00 0.00 4.02
762 4288 4.148825 ATCTCTCGTGGTGGCGGC 62.149 66.667 0.00 0.00 0.00 6.53
763 4289 2.202797 CATCTCTCGTGGTGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
764 4290 2.202797 CCATCTCTCGTGGTGGCG 60.203 66.667 0.00 0.00 31.96 5.69
765 4291 1.142748 CTCCATCTCTCGTGGTGGC 59.857 63.158 0.00 0.00 37.96 5.01
772 4298 3.354089 GAGCTTTCTCTCCATCTCTCG 57.646 52.381 0.00 0.00 36.42 4.04
825 4359 3.507786 GTGTACATGCTACACGATCACA 58.492 45.455 17.11 0.00 38.46 3.58
949 4483 2.028658 ACGATGGATGGATCGATCCTTG 60.029 50.000 37.39 25.16 46.72 3.61
969 4503 0.236711 TGAGGACGAACGAAGACGAC 59.763 55.000 0.14 0.00 42.66 4.34
971 4505 1.328439 CTTGAGGACGAACGAAGACG 58.672 55.000 0.14 0.00 45.75 4.18
972 4506 1.061485 GCTTGAGGACGAACGAAGAC 58.939 55.000 0.14 0.00 0.00 3.01
978 4515 1.336887 TGTGCTAGCTTGAGGACGAAC 60.337 52.381 17.23 1.81 40.44 3.95
983 4520 2.040278 ACCATTTGTGCTAGCTTGAGGA 59.960 45.455 17.23 0.00 0.00 3.71
1027 4568 3.120408 GCAAGAACATGCACAGACTAGTG 60.120 47.826 0.00 0.00 45.70 2.74
1093 4644 3.569210 CCTCCCTGCACCACACCA 61.569 66.667 0.00 0.00 0.00 4.17
1094 4645 2.351924 TTTCCTCCCTGCACCACACC 62.352 60.000 0.00 0.00 0.00 4.16
1095 4646 0.467290 TTTTCCTCCCTGCACCACAC 60.467 55.000 0.00 0.00 0.00 3.82
1096 4647 0.260230 TTTTTCCTCCCTGCACCACA 59.740 50.000 0.00 0.00 0.00 4.17
1097 4648 1.273327 CATTTTTCCTCCCTGCACCAC 59.727 52.381 0.00 0.00 0.00 4.16
1144 4695 0.736325 CCTGAACTAGGTTGCCGTCG 60.736 60.000 0.00 0.00 42.00 5.12
1156 4707 1.215647 GTCGACCGCATCCTGAACT 59.784 57.895 3.51 0.00 0.00 3.01
1375 4926 4.329545 AAGCCGCCGAGGAAGCAA 62.330 61.111 0.91 0.00 45.00 3.91
1433 4984 2.097038 CCTGGACAAGCGCGAAGAG 61.097 63.158 12.10 0.00 0.00 2.85
1546 5097 2.044555 CAGCACACCCATCTGCAGG 61.045 63.158 15.13 0.00 35.73 4.85
1558 5109 0.686789 AGAGGCACACATACAGCACA 59.313 50.000 0.00 0.00 0.00 4.57
1567 5118 0.817654 CGATGAGGTAGAGGCACACA 59.182 55.000 0.00 0.00 0.00 3.72
1680 5231 2.405172 AGAAGAAACGGTCGAAGAAGC 58.595 47.619 0.00 0.00 39.69 3.86
1703 5254 1.504912 AGTGTGCCTAGGCTGATGAT 58.495 50.000 33.07 12.50 42.51 2.45
1714 5265 1.812686 TAACGGCGAGAAGTGTGCCT 61.813 55.000 16.62 0.00 46.67 4.75
1882 5433 2.750637 GCGACGAGGACCTGGAGA 60.751 66.667 10.93 0.00 0.00 3.71
2065 5616 4.629523 TTCCACGGGTTCGGTGCC 62.630 66.667 0.00 0.00 41.39 5.01
2089 5640 1.745890 CTCCACACGGGACACAGAA 59.254 57.895 0.00 0.00 42.15 3.02
2092 5643 2.123208 TCCTCCACACGGGACACA 60.123 61.111 0.00 0.00 42.15 3.72
2101 5652 1.279496 CCATCTTCACCTCCTCCACA 58.721 55.000 0.00 0.00 0.00 4.17
2281 5832 3.665675 GACGGCGAGGGTCAGCATT 62.666 63.158 16.62 0.00 34.56 3.56
2362 5913 3.393472 GCCGATGCCAATCTTCTCT 57.607 52.632 0.00 0.00 0.00 3.10
2521 6072 1.320344 TGTAGATGAACGCCTCGCCT 61.320 55.000 0.00 0.00 0.00 5.52
2638 6189 3.518998 GAGACGAGGGCGCTGCTA 61.519 66.667 8.56 0.00 42.48 3.49
2677 6228 1.741770 GATGGTGTCACCGAGCCAC 60.742 63.158 17.27 1.54 42.58 5.01
2761 6312 1.867233 CACATGGCGCATAGAAGGTAC 59.133 52.381 10.83 0.00 0.00 3.34
2860 6411 2.719556 CAGTAATGAACGATCGGTAGCG 59.280 50.000 20.98 8.29 41.22 4.26
2864 6415 4.566759 CACATTCAGTAATGAACGATCGGT 59.433 41.667 20.98 14.31 44.50 4.69
2865 6416 4.550831 GCACATTCAGTAATGAACGATCGG 60.551 45.833 20.98 1.23 44.50 4.18
2866 6417 4.032786 TGCACATTCAGTAATGAACGATCG 59.967 41.667 14.88 14.88 44.50 3.69
2867 6418 5.469373 TGCACATTCAGTAATGAACGATC 57.531 39.130 7.92 0.00 44.50 3.69
2882 6433 4.225942 ACCGGATGGATCTATATGCACATT 59.774 41.667 9.46 0.00 36.14 2.71
3160 6712 5.389935 GCAAATCCTGTCGTCTTAACTTCAG 60.390 44.000 0.00 0.00 0.00 3.02
3161 6713 4.451096 GCAAATCCTGTCGTCTTAACTTCA 59.549 41.667 0.00 0.00 0.00 3.02
3162 6714 4.142881 GGCAAATCCTGTCGTCTTAACTTC 60.143 45.833 0.00 0.00 0.00 3.01
3163 6715 3.751698 GGCAAATCCTGTCGTCTTAACTT 59.248 43.478 0.00 0.00 0.00 2.66
3164 6716 3.244422 TGGCAAATCCTGTCGTCTTAACT 60.244 43.478 0.00 0.00 35.26 2.24
3165 6717 3.071479 TGGCAAATCCTGTCGTCTTAAC 58.929 45.455 0.00 0.00 35.26 2.01
3168 6720 2.359900 GATGGCAAATCCTGTCGTCTT 58.640 47.619 0.00 0.00 41.68 3.01
3170 6722 1.936547 GAGATGGCAAATCCTGTCGTC 59.063 52.381 0.00 0.00 44.71 4.20
3173 6725 2.725221 AGGAGATGGCAAATCCTGTC 57.275 50.000 19.71 0.00 41.95 3.51
3178 6730 7.500559 ACTTTATCAAGTAGGAGATGGCAAATC 59.499 37.037 0.00 0.00 41.81 2.17
3184 6736 5.529060 GGCAACTTTATCAAGTAGGAGATGG 59.471 44.000 0.00 0.00 42.89 3.51
3187 6739 5.012664 TGTGGCAACTTTATCAAGTAGGAGA 59.987 40.000 0.00 0.00 42.89 3.71
3283 6835 4.970860 ACCATGATCCTCAAGATGGTAG 57.029 45.455 10.57 0.00 35.99 3.18
3286 6838 5.704515 GTGATAACCATGATCCTCAAGATGG 59.295 44.000 6.06 6.06 34.42 3.51
3501 7053 3.161866 GGCAACCAGGAAGGACAATTTA 58.838 45.455 0.00 0.00 41.22 1.40
3834 7420 4.104143 GGTGCGATTCCGGTAGTG 57.896 61.111 0.00 0.00 36.06 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.