Multiple sequence alignment - TraesCS1D01G032500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G032500 chr1D 100.000 3321 0 0 1 3321 12821198 12824518 0.000000e+00 6133.0
1 TraesCS1D01G032500 chr1D 81.250 544 62 22 2785 3320 390687559 390688070 1.430000e-108 403.0
2 TraesCS1D01G032500 chr1B 90.856 1870 146 14 660 2515 18678266 18676408 0.000000e+00 2483.0
3 TraesCS1D01G032500 chr1B 90.397 1864 153 13 660 2515 18572096 18570251 0.000000e+00 2427.0
4 TraesCS1D01G032500 chr1B 93.081 607 39 3 1 606 18573587 18572983 0.000000e+00 885.0
5 TraesCS1D01G032500 chr1B 92.928 608 38 4 1 606 18681505 18680901 0.000000e+00 880.0
6 TraesCS1D01G032500 chr1B 87.671 438 53 1 1807 2244 18675855 18675419 2.960000e-140 508.0
7 TraesCS1D01G032500 chr1B 87.671 438 50 2 1807 2244 18569702 18569269 1.060000e-139 507.0
8 TraesCS1D01G032500 chr1B 87.912 273 27 2 2248 2516 18675157 18674887 1.920000e-82 316.0
9 TraesCS1D01G032500 chr1A 92.009 1752 126 7 677 2423 14467638 14469380 0.000000e+00 2447.0
10 TraesCS1D01G032500 chr1A 81.885 541 62 12 75 604 14466932 14467447 1.100000e-114 424.0
11 TraesCS1D01G032500 chr6A 78.414 227 41 8 368 591 374410960 374411181 1.240000e-29 141.0
12 TraesCS1D01G032500 chr4D 75.980 204 41 7 387 590 501508404 501508599 7.580000e-17 99.0
13 TraesCS1D01G032500 chr3B 78.333 120 24 2 472 590 73613563 73613445 3.550000e-10 76.8
14 TraesCS1D01G032500 chr7A 80.723 83 13 3 1 81 715344522 715344441 9.950000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G032500 chr1D 12821198 12824518 3320 False 6133.00 6133 100.00000 1 3321 1 chr1D.!!$F1 3320
1 TraesCS1D01G032500 chr1D 390687559 390688070 511 False 403.00 403 81.25000 2785 3320 1 chr1D.!!$F2 535
2 TraesCS1D01G032500 chr1B 18569269 18573587 4318 True 1273.00 2427 90.38300 1 2515 3 chr1B.!!$R1 2514
3 TraesCS1D01G032500 chr1B 18674887 18681505 6618 True 1046.75 2483 89.84175 1 2516 4 chr1B.!!$R2 2515
4 TraesCS1D01G032500 chr1A 14466932 14469380 2448 False 1435.50 2447 86.94700 75 2423 2 chr1A.!!$F1 2348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.695347 AAAAGCTCTAGGTGCAGGCT 59.305 50.000 10.39 0.0 34.52 4.58 F
907 3547 1.065926 TCCTCAGTCCACATCATGCAC 60.066 52.381 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1200 3841 0.826256 TCTCGGCGGCACTATGGTAT 60.826 55.0 10.53 0.0 0.0 2.73 R
2668 5322 0.098025 GAGAGAGAGACAGTTCGCGG 59.902 60.0 6.13 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.336887 ACGTGTGCCACTCTGTACATC 60.337 52.381 0.00 0.00 31.34 3.06
53 54 5.730550 TCGCTCTTCTATAAGAAAAGGCAA 58.269 37.500 0.00 0.00 41.19 4.52
61 62 4.996788 ATAAGAAAAGGCAATGCTCCTG 57.003 40.909 4.82 0.00 33.43 3.86
68 69 2.639327 GCAATGCTCCTGCCGGTTT 61.639 57.895 1.90 0.00 38.71 3.27
69 70 1.966762 CAATGCTCCTGCCGGTTTT 59.033 52.632 1.90 0.00 38.71 2.43
73 74 1.243902 TGCTCCTGCCGGTTTTTAAG 58.756 50.000 1.90 0.00 38.71 1.85
96 97 0.695347 AAAAGCTCTAGGTGCAGGCT 59.305 50.000 10.39 0.00 34.52 4.58
106 107 5.811190 TCTAGGTGCAGGCTTGTAATTTAA 58.189 37.500 0.00 0.00 0.00 1.52
114 115 5.105756 GCAGGCTTGTAATTTAACTGGTCAT 60.106 40.000 0.00 0.00 0.00 3.06
116 117 6.010219 AGGCTTGTAATTTAACTGGTCATGT 58.990 36.000 0.00 0.00 0.00 3.21
206 239 9.860898 AAAAATGATGGAGAATTACTAGCAAAC 57.139 29.630 0.00 0.00 0.00 2.93
375 410 2.236395 CTCACTCCATCCGGGTTTACTT 59.764 50.000 0.00 0.00 38.11 2.24
383 418 2.332117 TCCGGGTTTACTTGTCTCCTT 58.668 47.619 0.00 0.00 0.00 3.36
540 577 3.584406 TGCTAGCCTAATATGTGCTCCAT 59.416 43.478 13.29 0.00 36.57 3.41
560 597 5.485353 TCCATGTTTGGCCCAAAATACAATA 59.515 36.000 11.20 0.00 43.29 1.90
591 628 2.592102 AACCAGACGGAGGTAGTACA 57.408 50.000 2.06 0.00 38.76 2.90
606 643 7.824779 GGAGGTAGTACAATTGAGAATTCTGTT 59.175 37.037 14.00 2.15 0.00 3.16
607 644 9.220767 GAGGTAGTACAATTGAGAATTCTGTTT 57.779 33.333 14.00 0.49 0.00 2.83
608 645 9.003658 AGGTAGTACAATTGAGAATTCTGTTTG 57.996 33.333 14.00 14.76 0.00 2.93
610 647 7.219484 AGTACAATTGAGAATTCTGTTTGGG 57.781 36.000 14.00 0.57 0.00 4.12
611 648 6.777580 AGTACAATTGAGAATTCTGTTTGGGT 59.222 34.615 14.00 6.60 0.00 4.51
613 650 5.835280 ACAATTGAGAATTCTGTTTGGGTCT 59.165 36.000 14.00 0.00 0.00 3.85
615 652 7.671398 ACAATTGAGAATTCTGTTTGGGTCTAT 59.329 33.333 14.00 0.00 0.00 1.98
648 3201 9.128107 GATATACGGGCAAATAAAAATCACATG 57.872 33.333 0.00 0.00 0.00 3.21
907 3547 1.065926 TCCTCAGTCCACATCATGCAC 60.066 52.381 0.00 0.00 0.00 4.57
915 3555 2.893895 CATCATGCACGCCGAGCT 60.894 61.111 8.20 0.00 0.00 4.09
981 3622 3.585732 CCCCCACTATATAAACGACCCAT 59.414 47.826 0.00 0.00 0.00 4.00
1068 3709 2.815647 CTCTTCCGCTCGTTGCCC 60.816 66.667 0.00 0.00 38.78 5.36
1083 3724 2.443016 CCCCTCCTCGTCCTCCTG 60.443 72.222 0.00 0.00 0.00 3.86
1084 3725 2.684104 CCCTCCTCGTCCTCCTGA 59.316 66.667 0.00 0.00 0.00 3.86
1087 3728 1.169661 CCTCCTCGTCCTCCTGATCG 61.170 65.000 0.00 0.00 0.00 3.69
1129 3770 3.066190 CCTCCCGTGCTACGTCCA 61.066 66.667 0.00 0.00 40.58 4.02
1272 3913 0.965866 TGGACTTCATCGACGCCTCT 60.966 55.000 0.00 0.00 0.00 3.69
1311 3952 1.134367 CTCGGCTATGAACTCGGTGAA 59.866 52.381 0.00 0.00 0.00 3.18
1332 3973 1.080705 CGAGTTCACCGACCTCACC 60.081 63.158 0.00 0.00 0.00 4.02
1336 3977 0.179067 GTTCACCGACCTCACCAACA 60.179 55.000 0.00 0.00 0.00 3.33
1350 3991 1.133513 ACCAACAAGGAGTTCATGGCA 60.134 47.619 0.00 0.00 38.74 4.92
1362 4003 1.142965 CATGGCACGGTATGTCGGA 59.857 57.895 0.00 0.00 34.72 4.55
1364 4005 1.040893 ATGGCACGGTATGTCGGAGA 61.041 55.000 0.00 0.00 34.72 3.71
1365 4006 1.040893 TGGCACGGTATGTCGGAGAT 61.041 55.000 0.00 0.00 40.67 2.75
1377 4018 0.106708 TCGGAGATGCTTATGGTGGC 59.893 55.000 0.00 0.00 0.00 5.01
1422 4063 3.192844 TCACTACTTTGGTCGGAGATGTC 59.807 47.826 0.00 0.00 40.67 3.06
1423 4064 3.056821 CACTACTTTGGTCGGAGATGTCA 60.057 47.826 0.00 0.00 40.67 3.58
1425 4066 1.336887 ACTTTGGTCGGAGATGTCACG 60.337 52.381 0.00 0.00 40.67 4.35
1433 4074 1.686110 GAGATGTCACGGAGGGGGT 60.686 63.158 0.00 0.00 0.00 4.95
1435 4076 1.987855 GATGTCACGGAGGGGGTGA 60.988 63.158 0.00 0.00 41.82 4.02
1516 4157 2.636412 CGGCAGTTCGACTGGAGGA 61.636 63.158 14.19 0.00 46.01 3.71
1606 4247 4.609947 CGTGTAGTTACTGGTTACACACA 58.390 43.478 14.11 0.00 44.53 3.72
1613 4254 5.529800 AGTTACTGGTTACACACATGAAACC 59.470 40.000 0.00 5.80 41.45 3.27
1694 4335 5.649831 GGTGGAGAGCTTGAACAAGATAAAT 59.350 40.000 17.19 2.29 40.79 1.40
1718 4359 0.324830 GGGAGCTGGTAGACCTGTCT 60.325 60.000 5.01 5.01 43.40 3.41
1730 4371 4.594367 CTGTCTGTGCAGGAGCTC 57.406 61.111 4.71 4.71 42.74 4.09
1743 4384 3.293901 GAGCTCGTGGACTGCAGCT 62.294 63.158 15.27 2.45 45.07 4.24
1751 4392 2.433318 GACTGCAGCTCGGGTGTC 60.433 66.667 15.27 0.00 33.19 3.67
1766 4407 0.671781 GTGTCTTCAGCTCGCCATGT 60.672 55.000 0.00 0.00 0.00 3.21
1778 4419 4.734652 CCATGTGGCTACGGGTTT 57.265 55.556 2.97 0.00 0.00 3.27
1787 4428 0.323957 GCTACGGGTTTCCCAAGAGT 59.676 55.000 5.64 0.00 45.83 3.24
1793 4434 1.692411 GGTTTCCCAAGAGTGCACTT 58.308 50.000 22.65 8.27 0.00 3.16
1794 4435 1.609072 GGTTTCCCAAGAGTGCACTTC 59.391 52.381 22.65 14.01 0.00 3.01
1817 4458 2.524306 TGGATCAAATCAAAAGGCGGT 58.476 42.857 0.00 0.00 0.00 5.68
1866 4507 2.437180 CCAAGCGAGGCAGATGCA 60.437 61.111 7.19 0.00 44.36 3.96
1868 4509 2.036571 CAAGCGAGGCAGATGCACA 61.037 57.895 7.19 0.00 44.36 4.57
2039 4681 4.338710 GGCGTGTACAAGGGGCCA 62.339 66.667 18.36 0.00 43.23 5.36
2043 4685 2.045438 TGTACAAGGGGCCATGCG 60.045 61.111 4.39 0.00 0.00 4.73
2114 4756 1.067821 GCCGGAGAAGAGTACTGGATG 59.932 57.143 5.05 0.00 32.36 3.51
2252 4894 7.926555 GCCATGTAGTTAGTATATCGGCATATT 59.073 37.037 0.00 0.00 32.02 1.28
2271 4913 1.006102 GTCTGCGCGCTGGGTATAT 60.006 57.895 33.04 0.00 0.00 0.86
2280 4926 3.639538 GCGCTGGGTATATATATGACGG 58.360 50.000 0.00 2.33 0.00 4.79
2297 4943 0.372334 CGGGTAGCGTAATGTGCAAC 59.628 55.000 0.00 0.00 33.85 4.17
2347 4993 1.028330 CACATCCTGGCTGTGCGAAT 61.028 55.000 16.79 0.00 37.76 3.34
2355 5001 1.302366 GGCTGTGCGAATGATGATGA 58.698 50.000 0.00 0.00 0.00 2.92
2378 5030 1.836166 CGGATGGATGGCTGGATCTAT 59.164 52.381 0.00 0.00 0.00 1.98
2379 5031 2.158986 CGGATGGATGGCTGGATCTATC 60.159 54.545 0.00 0.00 38.81 2.08
2411 5065 1.686587 TGGCACCGTATCTACAGATGG 59.313 52.381 1.88 0.00 36.05 3.51
2419 5073 5.641209 ACCGTATCTACAGATGGTACGATAC 59.359 44.000 12.39 0.00 36.61 2.24
2428 5082 9.217278 CTACAGATGGTACGATACAGTACTATT 57.783 37.037 0.00 0.00 44.91 1.73
2451 5105 4.913335 ATATGTGTGTAGTCCTACGTGG 57.087 45.455 0.00 0.00 38.85 4.94
2453 5107 1.251251 GTGTGTAGTCCTACGTGGGT 58.749 55.000 18.36 1.70 38.85 4.51
2462 5116 1.001520 TCCTACGTGGGTTGTGATGTG 59.998 52.381 18.36 0.00 36.20 3.21
2464 5118 2.066262 CTACGTGGGTTGTGATGTGTC 58.934 52.381 0.00 0.00 0.00 3.67
2481 5135 3.936453 TGTGTCTGTTTTGTCAGGTGTAC 59.064 43.478 0.00 0.00 36.25 2.90
2482 5136 3.936453 GTGTCTGTTTTGTCAGGTGTACA 59.064 43.478 0.00 0.00 36.25 2.90
2518 5172 9.391006 TGTAAGTGCAAGTTCTTAATAATAGGG 57.609 33.333 0.00 0.00 0.00 3.53
2519 5173 9.609346 GTAAGTGCAAGTTCTTAATAATAGGGA 57.391 33.333 0.00 0.00 0.00 4.20
2521 5175 9.528489 AAGTGCAAGTTCTTAATAATAGGGAAA 57.472 29.630 0.00 0.00 0.00 3.13
2522 5176 8.957466 AGTGCAAGTTCTTAATAATAGGGAAAC 58.043 33.333 0.00 0.00 0.00 2.78
2523 5177 7.908601 GTGCAAGTTCTTAATAATAGGGAAACG 59.091 37.037 0.00 0.00 0.00 3.60
2524 5178 7.608761 TGCAAGTTCTTAATAATAGGGAAACGT 59.391 33.333 0.00 0.00 0.00 3.99
2528 5182 8.456471 AGTTCTTAATAATAGGGAAACGTTTGC 58.544 33.333 22.71 22.71 0.00 3.68
2534 5188 1.871077 GGGAAACGTTTGCCTACGG 59.129 57.895 35.87 0.00 44.30 4.02
2552 5206 2.747855 CAGTCCGGCCCAAGCTTC 60.748 66.667 0.00 0.00 39.73 3.86
2553 5207 4.394712 AGTCCGGCCCAAGCTTCG 62.395 66.667 0.00 0.00 39.73 3.79
2561 5215 4.394712 CCAAGCTTCGGCCGGACT 62.395 66.667 27.83 17.39 43.01 3.85
2562 5216 2.815647 CAAGCTTCGGCCGGACTC 60.816 66.667 27.83 9.28 43.01 3.36
2563 5217 2.997897 AAGCTTCGGCCGGACTCT 60.998 61.111 27.83 11.77 43.01 3.24
2564 5218 2.584391 AAGCTTCGGCCGGACTCTT 61.584 57.895 27.83 17.43 43.01 2.85
2565 5219 2.508586 AAGCTTCGGCCGGACTCTTC 62.509 60.000 27.83 7.78 43.01 2.87
2566 5220 2.202623 CTTCGGCCGGACTCTTCG 60.203 66.667 27.83 0.00 0.00 3.79
2567 5221 4.430765 TTCGGCCGGACTCTTCGC 62.431 66.667 27.83 0.00 0.00 4.70
2570 5224 4.856607 GGCCGGACTCTTCGCTCG 62.857 72.222 5.05 0.00 0.00 5.03
2572 5226 3.816524 CCGGACTCTTCGCTCGCT 61.817 66.667 0.00 0.00 0.00 4.93
2573 5227 2.277628 CGGACTCTTCGCTCGCTC 60.278 66.667 0.00 0.00 0.00 5.03
2574 5228 2.103340 GGACTCTTCGCTCGCTCC 59.897 66.667 0.00 0.00 0.00 4.70
2577 5231 2.214181 GACTCTTCGCTCGCTCCCAA 62.214 60.000 0.00 0.00 0.00 4.12
2578 5232 1.807573 CTCTTCGCTCGCTCCCAAC 60.808 63.158 0.00 0.00 0.00 3.77
2579 5233 2.048222 CTTCGCTCGCTCCCAACA 60.048 61.111 0.00 0.00 0.00 3.33
2580 5234 2.357034 TTCGCTCGCTCCCAACAC 60.357 61.111 0.00 0.00 0.00 3.32
2581 5235 3.876589 TTCGCTCGCTCCCAACACC 62.877 63.158 0.00 0.00 0.00 4.16
2584 5238 3.322466 CTCGCTCCCAACACCCCT 61.322 66.667 0.00 0.00 0.00 4.79
2585 5239 3.316573 CTCGCTCCCAACACCCCTC 62.317 68.421 0.00 0.00 0.00 4.30
2586 5240 4.760047 CGCTCCCAACACCCCTCG 62.760 72.222 0.00 0.00 0.00 4.63
2590 5244 4.263572 CCCAACACCCCTCGCACA 62.264 66.667 0.00 0.00 0.00 4.57
2592 5246 2.978010 CAACACCCCTCGCACACC 60.978 66.667 0.00 0.00 0.00 4.16
2599 5253 2.978010 CCTCGCACACCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
2600 5254 3.345808 CTCGCACACCCACCAACG 61.346 66.667 0.00 0.00 0.00 4.10
2604 5258 3.286751 CACACCCACCAACGCCAG 61.287 66.667 0.00 0.00 0.00 4.85
2605 5259 4.579384 ACACCCACCAACGCCAGG 62.579 66.667 0.00 0.00 0.00 4.45
2613 5267 3.136123 CAACGCCAGGGAGCCATG 61.136 66.667 0.00 0.00 0.00 3.66
2618 5272 3.790437 CCAGGGAGCCATGCGTCT 61.790 66.667 0.00 0.00 0.00 4.18
2619 5273 2.270205 CAGGGAGCCATGCGTCTT 59.730 61.111 0.00 0.00 0.00 3.01
2622 5276 2.486966 GGAGCCATGCGTCTTTGC 59.513 61.111 0.00 0.00 0.00 3.68
2623 5277 2.486966 GAGCCATGCGTCTTTGCC 59.513 61.111 0.00 0.00 0.00 4.52
2626 5280 4.481112 CCATGCGTCTTTGCCGGC 62.481 66.667 22.73 22.73 0.00 6.13
2627 5281 4.481112 CATGCGTCTTTGCCGGCC 62.481 66.667 26.77 6.80 0.00 6.13
2635 5289 4.724501 TTTGCCGGCCCACGCATA 62.725 61.111 26.77 0.00 42.52 3.14
2636 5290 4.497984 TTGCCGGCCCACGCATAT 62.498 61.111 26.77 0.00 42.52 1.78
2637 5291 4.927782 TGCCGGCCCACGCATATC 62.928 66.667 26.77 0.00 42.52 1.63
2640 5294 4.969196 CGGCCCACGCATATCGCT 62.969 66.667 0.00 0.00 43.23 4.93
2642 5296 3.044305 GCCCACGCATATCGCTCC 61.044 66.667 0.00 0.00 43.23 4.70
2644 5298 1.373497 CCCACGCATATCGCTCCTC 60.373 63.158 0.00 0.00 43.23 3.71
2647 5301 0.032678 CACGCATATCGCTCCTCCTT 59.967 55.000 0.00 0.00 43.23 3.36
2649 5303 2.094494 CACGCATATCGCTCCTCCTTAT 60.094 50.000 0.00 0.00 43.23 1.73
2650 5304 2.164624 ACGCATATCGCTCCTCCTTATC 59.835 50.000 0.00 0.00 43.23 1.75
2651 5305 2.480416 CGCATATCGCTCCTCCTTATCC 60.480 54.545 0.00 0.00 39.08 2.59
2652 5306 2.763448 GCATATCGCTCCTCCTTATCCT 59.237 50.000 0.00 0.00 37.77 3.24
2655 5309 5.278758 GCATATCGCTCCTCCTTATCCTATC 60.279 48.000 0.00 0.00 37.77 2.08
2657 5311 4.390129 TCGCTCCTCCTTATCCTATCTT 57.610 45.455 0.00 0.00 0.00 2.40
2658 5312 4.337145 TCGCTCCTCCTTATCCTATCTTC 58.663 47.826 0.00 0.00 0.00 2.87
2660 5314 4.770010 CGCTCCTCCTTATCCTATCTTCTT 59.230 45.833 0.00 0.00 0.00 2.52
2661 5315 5.105917 CGCTCCTCCTTATCCTATCTTCTTC 60.106 48.000 0.00 0.00 0.00 2.87
2662 5316 6.016555 GCTCCTCCTTATCCTATCTTCTTCT 58.983 44.000 0.00 0.00 0.00 2.85
2663 5317 6.496911 GCTCCTCCTTATCCTATCTTCTTCTT 59.503 42.308 0.00 0.00 0.00 2.52
2664 5318 7.309805 GCTCCTCCTTATCCTATCTTCTTCTTC 60.310 44.444 0.00 0.00 0.00 2.87
2665 5319 7.013834 TCCTCCTTATCCTATCTTCTTCTTCC 58.986 42.308 0.00 0.00 0.00 3.46
2666 5320 7.016296 CCTCCTTATCCTATCTTCTTCTTCCT 58.984 42.308 0.00 0.00 0.00 3.36
2668 5322 7.013834 TCCTTATCCTATCTTCTTCTTCCTCC 58.986 42.308 0.00 0.00 0.00 4.30
2669 5323 6.212589 CCTTATCCTATCTTCTTCTTCCTCCC 59.787 46.154 0.00 0.00 0.00 4.30
2670 5324 3.567397 TCCTATCTTCTTCTTCCTCCCG 58.433 50.000 0.00 0.00 0.00 5.14
2671 5325 2.036604 CCTATCTTCTTCTTCCTCCCGC 59.963 54.545 0.00 0.00 0.00 6.13
2672 5326 0.461961 ATCTTCTTCTTCCTCCCGCG 59.538 55.000 0.00 0.00 0.00 6.46
2673 5327 0.611062 TCTTCTTCTTCCTCCCGCGA 60.611 55.000 8.23 0.00 0.00 5.87
2674 5328 0.246635 CTTCTTCTTCCTCCCGCGAA 59.753 55.000 8.23 0.00 0.00 4.70
2675 5329 0.037605 TTCTTCTTCCTCCCGCGAAC 60.038 55.000 8.23 0.00 0.00 3.95
2676 5330 0.898789 TCTTCTTCCTCCCGCGAACT 60.899 55.000 8.23 0.00 0.00 3.01
2677 5331 0.737715 CTTCTTCCTCCCGCGAACTG 60.738 60.000 8.23 0.00 0.00 3.16
2678 5332 1.469335 TTCTTCCTCCCGCGAACTGT 61.469 55.000 8.23 0.00 0.00 3.55
2679 5333 1.446272 CTTCCTCCCGCGAACTGTC 60.446 63.158 8.23 0.00 0.00 3.51
2680 5334 1.878656 CTTCCTCCCGCGAACTGTCT 61.879 60.000 8.23 0.00 0.00 3.41
2681 5335 1.874345 TTCCTCCCGCGAACTGTCTC 61.874 60.000 8.23 0.00 0.00 3.36
2682 5336 2.344203 CCTCCCGCGAACTGTCTCT 61.344 63.158 8.23 0.00 0.00 3.10
2683 5337 1.137825 CTCCCGCGAACTGTCTCTC 59.862 63.158 8.23 0.00 0.00 3.20
2684 5338 1.303398 TCCCGCGAACTGTCTCTCT 60.303 57.895 8.23 0.00 0.00 3.10
2685 5339 1.137825 CCCGCGAACTGTCTCTCTC 59.862 63.158 8.23 0.00 0.00 3.20
2686 5340 1.309499 CCCGCGAACTGTCTCTCTCT 61.309 60.000 8.23 0.00 0.00 3.10
2687 5341 0.098025 CCGCGAACTGTCTCTCTCTC 59.902 60.000 8.23 0.00 0.00 3.20
2688 5342 0.098025 CGCGAACTGTCTCTCTCTCC 59.902 60.000 0.00 0.00 0.00 3.71
2689 5343 0.454196 GCGAACTGTCTCTCTCTCCC 59.546 60.000 0.00 0.00 0.00 4.30
2690 5344 0.730265 CGAACTGTCTCTCTCTCCCG 59.270 60.000 0.00 0.00 0.00 5.14
2691 5345 1.676314 CGAACTGTCTCTCTCTCCCGA 60.676 57.143 0.00 0.00 0.00 5.14
2692 5346 2.650322 GAACTGTCTCTCTCTCCCGAT 58.350 52.381 0.00 0.00 0.00 4.18
2693 5347 2.051334 ACTGTCTCTCTCTCCCGATG 57.949 55.000 0.00 0.00 0.00 3.84
2694 5348 0.667993 CTGTCTCTCTCTCCCGATGC 59.332 60.000 0.00 0.00 0.00 3.91
2695 5349 1.098129 TGTCTCTCTCTCCCGATGCG 61.098 60.000 0.00 0.00 0.00 4.73
2696 5350 1.098712 GTCTCTCTCTCCCGATGCGT 61.099 60.000 0.00 0.00 0.00 5.24
2697 5351 1.098129 TCTCTCTCTCCCGATGCGTG 61.098 60.000 0.00 0.00 0.00 5.34
2698 5352 2.279120 CTCTCTCCCGATGCGTGC 60.279 66.667 0.00 0.00 0.00 5.34
2699 5353 2.755876 TCTCTCCCGATGCGTGCT 60.756 61.111 0.00 0.00 0.00 4.40
2700 5354 2.584418 CTCTCCCGATGCGTGCTG 60.584 66.667 0.00 0.00 0.00 4.41
2701 5355 4.819761 TCTCCCGATGCGTGCTGC 62.820 66.667 0.00 0.00 46.70 5.25
2705 5359 4.246206 CCGATGCGTGCTGCCATG 62.246 66.667 0.00 0.00 45.60 3.66
2706 5360 4.246206 CGATGCGTGCTGCCATGG 62.246 66.667 7.63 7.63 45.60 3.66
2707 5361 4.564116 GATGCGTGCTGCCATGGC 62.564 66.667 30.54 30.54 45.60 4.40
2727 5381 3.437867 CGCTCCGCCTCACTATCT 58.562 61.111 0.00 0.00 0.00 1.98
2728 5382 1.284408 CGCTCCGCCTCACTATCTC 59.716 63.158 0.00 0.00 0.00 2.75
2729 5383 1.169661 CGCTCCGCCTCACTATCTCT 61.170 60.000 0.00 0.00 0.00 3.10
2730 5384 0.313672 GCTCCGCCTCACTATCTCTG 59.686 60.000 0.00 0.00 0.00 3.35
2731 5385 1.974265 CTCCGCCTCACTATCTCTGA 58.026 55.000 0.00 0.00 0.00 3.27
2732 5386 2.513753 CTCCGCCTCACTATCTCTGAT 58.486 52.381 0.00 0.00 0.00 2.90
2733 5387 2.487762 CTCCGCCTCACTATCTCTGATC 59.512 54.545 0.00 0.00 0.00 2.92
2734 5388 1.198867 CCGCCTCACTATCTCTGATCG 59.801 57.143 0.00 0.00 0.00 3.69
2735 5389 1.876799 CGCCTCACTATCTCTGATCGT 59.123 52.381 0.00 0.00 0.00 3.73
2736 5390 2.095969 CGCCTCACTATCTCTGATCGTC 60.096 54.545 0.00 0.00 0.00 4.20
2737 5391 2.095969 GCCTCACTATCTCTGATCGTCG 60.096 54.545 0.00 0.00 0.00 5.12
2738 5392 3.135225 CCTCACTATCTCTGATCGTCGT 58.865 50.000 0.00 0.00 0.00 4.34
2739 5393 3.185594 CCTCACTATCTCTGATCGTCGTC 59.814 52.174 0.00 0.00 0.00 4.20
2740 5394 2.795470 TCACTATCTCTGATCGTCGTCG 59.205 50.000 0.00 0.00 38.55 5.12
2741 5395 1.527736 ACTATCTCTGATCGTCGTCGC 59.472 52.381 0.00 0.00 36.96 5.19
2742 5396 1.527311 CTATCTCTGATCGTCGTCGCA 59.473 52.381 0.00 0.00 36.96 5.10
2743 5397 0.733150 ATCTCTGATCGTCGTCGCAA 59.267 50.000 0.00 0.00 36.96 4.85
2744 5398 0.733150 TCTCTGATCGTCGTCGCAAT 59.267 50.000 0.00 0.00 36.96 3.56
2745 5399 0.842613 CTCTGATCGTCGTCGCAATG 59.157 55.000 0.00 0.00 36.96 2.82
2746 5400 0.525455 TCTGATCGTCGTCGCAATGG 60.525 55.000 0.00 0.00 36.96 3.16
2747 5401 2.082437 CTGATCGTCGTCGCAATGGC 62.082 60.000 0.00 0.00 36.96 4.40
2748 5402 1.878522 GATCGTCGTCGCAATGGCT 60.879 57.895 0.00 0.00 38.10 4.75
2749 5403 2.082437 GATCGTCGTCGCAATGGCTG 62.082 60.000 0.00 0.00 38.10 4.85
2768 5422 3.535962 GCTCCGCCCCTCTCTCTG 61.536 72.222 0.00 0.00 0.00 3.35
2769 5423 2.277072 CTCCGCCCCTCTCTCTGA 59.723 66.667 0.00 0.00 0.00 3.27
2770 5424 1.152567 CTCCGCCCCTCTCTCTGAT 60.153 63.158 0.00 0.00 0.00 2.90
2771 5425 1.152652 TCCGCCCCTCTCTCTGATC 60.153 63.158 0.00 0.00 0.00 2.92
2772 5426 2.206536 CCGCCCCTCTCTCTGATCC 61.207 68.421 0.00 0.00 0.00 3.36
2773 5427 1.152567 CGCCCCTCTCTCTGATCCT 60.153 63.158 0.00 0.00 0.00 3.24
2774 5428 1.178534 CGCCCCTCTCTCTGATCCTC 61.179 65.000 0.00 0.00 0.00 3.71
2775 5429 1.178534 GCCCCTCTCTCTGATCCTCG 61.179 65.000 0.00 0.00 0.00 4.63
2776 5430 0.184933 CCCCTCTCTCTGATCCTCGT 59.815 60.000 0.00 0.00 0.00 4.18
2777 5431 1.604604 CCCTCTCTCTGATCCTCGTC 58.395 60.000 0.00 0.00 0.00 4.20
2778 5432 1.225855 CCTCTCTCTGATCCTCGTCG 58.774 60.000 0.00 0.00 0.00 5.12
2779 5433 0.586319 CTCTCTCTGATCCTCGTCGC 59.414 60.000 0.00 0.00 0.00 5.19
2780 5434 0.816018 TCTCTCTGATCCTCGTCGCC 60.816 60.000 0.00 0.00 0.00 5.54
2781 5435 1.077716 TCTCTGATCCTCGTCGCCA 60.078 57.895 0.00 0.00 0.00 5.69
2782 5436 0.466372 TCTCTGATCCTCGTCGCCAT 60.466 55.000 0.00 0.00 0.00 4.40
2783 5437 0.318529 CTCTGATCCTCGTCGCCATG 60.319 60.000 0.00 0.00 0.00 3.66
2784 5438 1.300465 CTGATCCTCGTCGCCATGG 60.300 63.158 7.63 7.63 0.00 3.66
2785 5439 2.663188 GATCCTCGTCGCCATGGC 60.663 66.667 27.67 27.67 37.85 4.40
2786 5440 4.241555 ATCCTCGTCGCCATGGCC 62.242 66.667 30.79 16.77 37.98 5.36
2808 5462 1.528309 CTCCGCCTCTCTCTCTCCC 60.528 68.421 0.00 0.00 0.00 4.30
2810 5464 1.152567 CCGCCTCTCTCTCTCCCAT 60.153 63.158 0.00 0.00 0.00 4.00
2811 5465 1.178534 CCGCCTCTCTCTCTCCCATC 61.179 65.000 0.00 0.00 0.00 3.51
2812 5466 0.467106 CGCCTCTCTCTCTCCCATCA 60.467 60.000 0.00 0.00 0.00 3.07
2827 5481 4.889856 TCATCGTCGCCATGGCCG 62.890 66.667 30.79 27.22 37.98 6.13
2843 5498 2.780094 CCGCGCACTCTCCTCTCAT 61.780 63.158 8.75 0.00 0.00 2.90
2845 5500 0.869454 CGCGCACTCTCCTCTCATTC 60.869 60.000 8.75 0.00 0.00 2.67
2848 5503 1.066908 CGCACTCTCCTCTCATTCTCC 59.933 57.143 0.00 0.00 0.00 3.71
2859 5514 1.895707 CATTCTCCCCATGCTCGCC 60.896 63.158 0.00 0.00 0.00 5.54
2875 5530 2.697644 CCCCATGGCCTCCTCCTT 60.698 66.667 6.09 0.00 0.00 3.36
2876 5531 2.319762 CCCCATGGCCTCCTCCTTT 61.320 63.158 6.09 0.00 0.00 3.11
2877 5532 1.228510 CCCATGGCCTCCTCCTTTC 59.771 63.158 6.09 0.00 0.00 2.62
2878 5533 1.284841 CCCATGGCCTCCTCCTTTCT 61.285 60.000 6.09 0.00 0.00 2.52
2879 5534 0.182299 CCATGGCCTCCTCCTTTCTC 59.818 60.000 3.32 0.00 0.00 2.87
2880 5535 0.182299 CATGGCCTCCTCCTTTCTCC 59.818 60.000 3.32 0.00 0.00 3.71
2881 5536 0.253347 ATGGCCTCCTCCTTTCTCCA 60.253 55.000 3.32 0.00 0.00 3.86
2882 5537 1.201429 TGGCCTCCTCCTTTCTCCAC 61.201 60.000 3.32 0.00 0.00 4.02
2883 5538 1.604915 GCCTCCTCCTTTCTCCACC 59.395 63.158 0.00 0.00 0.00 4.61
2884 5539 1.916206 GCCTCCTCCTTTCTCCACCC 61.916 65.000 0.00 0.00 0.00 4.61
2885 5540 1.617947 CCTCCTCCTTTCTCCACCCG 61.618 65.000 0.00 0.00 0.00 5.28
2888 5543 3.327404 TCCTTTCTCCACCCGCCC 61.327 66.667 0.00 0.00 0.00 6.13
2908 5563 3.797353 CCCATGGGCACGGCTAGT 61.797 66.667 20.41 0.00 0.00 2.57
2929 5584 5.201243 AGTAAGCTTTTCTTTTCCACCAGT 58.799 37.500 3.20 0.00 36.25 4.00
2939 5594 2.746279 TTCCACCAGTCCACAAATGT 57.254 45.000 0.00 0.00 0.00 2.71
2941 5596 2.305928 TCCACCAGTCCACAAATGTTG 58.694 47.619 0.00 0.00 0.00 3.33
2942 5597 1.269726 CCACCAGTCCACAAATGTTGC 60.270 52.381 0.00 0.00 0.00 4.17
2943 5598 1.408340 CACCAGTCCACAAATGTTGCA 59.592 47.619 0.00 0.00 0.00 4.08
2944 5599 2.036217 CACCAGTCCACAAATGTTGCAT 59.964 45.455 0.00 0.00 0.00 3.96
2945 5600 2.297033 ACCAGTCCACAAATGTTGCATC 59.703 45.455 0.00 0.00 0.00 3.91
2947 5602 2.296752 CAGTCCACAAATGTTGCATCCA 59.703 45.455 0.00 0.00 0.00 3.41
2948 5603 2.964464 AGTCCACAAATGTTGCATCCAA 59.036 40.909 0.00 0.00 0.00 3.53
2955 5610 4.847255 GTTGCATCCAACGCTCAC 57.153 55.556 0.00 0.00 41.62 3.51
2956 5611 1.948508 GTTGCATCCAACGCTCACA 59.051 52.632 0.00 0.00 41.62 3.58
2957 5612 0.523072 GTTGCATCCAACGCTCACAT 59.477 50.000 0.00 0.00 41.62 3.21
2958 5613 1.068333 GTTGCATCCAACGCTCACATT 60.068 47.619 0.00 0.00 41.62 2.71
2961 5616 2.035704 TGCATCCAACGCTCACATTTTT 59.964 40.909 0.00 0.00 0.00 1.94
2976 5631 1.652012 TTTTTGCTGGAACTCGCGG 59.348 52.632 6.13 0.00 0.00 6.46
3021 5676 1.155042 GGCTGTGAGCTCTTGTTCAG 58.845 55.000 16.19 14.91 41.99 3.02
3059 5714 4.503741 TTTCTGTTAATGAAGCTGCACC 57.496 40.909 0.00 0.00 0.00 5.01
3060 5715 3.423539 TCTGTTAATGAAGCTGCACCT 57.576 42.857 0.00 0.00 0.00 4.00
3061 5716 3.076621 TCTGTTAATGAAGCTGCACCTG 58.923 45.455 0.00 0.00 0.00 4.00
3063 5718 1.135286 GTTAATGAAGCTGCACCTGCC 60.135 52.381 0.00 0.00 41.18 4.85
3064 5719 1.026182 TAATGAAGCTGCACCTGCCG 61.026 55.000 0.00 0.00 41.18 5.69
3100 5757 3.255725 CCACTGGCATTATGTTTTGCTG 58.744 45.455 0.00 0.00 38.88 4.41
3107 5764 3.928375 GCATTATGTTTTGCTGGAACCAG 59.072 43.478 15.64 15.64 46.15 4.00
3142 5799 4.024809 GCTGGAACCGTCTATAGATTTTGC 60.025 45.833 5.57 5.75 0.00 3.68
3148 5805 5.360591 ACCGTCTATAGATTTTGCTGGAAG 58.639 41.667 5.57 0.00 0.00 3.46
3151 5808 5.174035 CGTCTATAGATTTTGCTGGAAGACG 59.826 44.000 5.57 6.65 38.26 4.18
3153 5810 6.419413 GTCTATAGATTTTGCTGGAAGACGAG 59.581 42.308 5.57 0.00 34.07 4.18
3156 5813 1.878953 TTTTGCTGGAAGACGAGGTC 58.121 50.000 0.00 0.00 34.07 3.85
3182 5840 1.370051 GCGACGTTTTGCTGGAACC 60.370 57.895 0.00 0.00 0.00 3.62
3195 5853 3.234234 CTGGAACCAGCCAATATGGAT 57.766 47.619 7.95 0.00 39.92 3.41
3215 5873 1.202817 TGCTACAACCAGCGACGAATA 59.797 47.619 0.00 0.00 44.88 1.75
3219 5877 1.463444 ACAACCAGCGACGAATAAAGC 59.537 47.619 0.00 0.00 0.00 3.51
3229 5887 4.732938 GCGACGAATAAAGCTACTACTGGT 60.733 45.833 0.00 0.00 0.00 4.00
3230 5888 4.968788 CGACGAATAAAGCTACTACTGGTC 59.031 45.833 0.00 0.00 0.00 4.02
3263 5921 1.268234 GCAATCGTTCATGGTAGCTGC 60.268 52.381 0.00 0.00 0.00 5.25
3274 5932 4.082523 TAGCTGCCACCCTGCGAC 62.083 66.667 0.00 0.00 42.57 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.153842 CGCGATGTACAGAGTGGCA 60.154 57.895 0.00 0.00 0.00 4.92
53 54 1.818674 CTTAAAAACCGGCAGGAGCAT 59.181 47.619 10.86 0.00 44.61 3.79
106 107 8.771286 TGCCATATATATAATCACATGACCAGT 58.229 33.333 0.00 0.00 0.00 4.00
114 115 6.233905 AGCGGTGCCATATATATAATCACA 57.766 37.500 16.98 5.10 0.00 3.58
116 117 6.054941 CCAAGCGGTGCCATATATATAATCA 58.945 40.000 0.00 0.00 0.00 2.57
206 239 9.767684 CACTGATTAAGCTAAGATATACGAGAG 57.232 37.037 0.00 0.00 0.00 3.20
317 352 9.261035 AGAAAAGATGGAGTGAGAATTACTAGA 57.739 33.333 0.00 0.00 0.00 2.43
352 387 0.613777 AAACCCGGATGGAGTGAGAC 59.386 55.000 0.73 0.00 37.49 3.36
476 512 9.605275 TCACCAAAAATTATGTTGTTGAATTCA 57.395 25.926 3.38 3.38 0.00 2.57
498 535 7.432252 GCTAGCAAAATGTTAATACATGTCACC 59.568 37.037 10.63 0.00 44.14 4.02
540 577 5.544176 TCCTTATTGTATTTTGGGCCAAACA 59.456 36.000 30.49 22.91 32.79 2.83
560 597 3.644738 TCCGTCTGGTTTTCTTAGTCCTT 59.355 43.478 0.00 0.00 36.30 3.36
591 628 9.753674 TTATAGACCCAAACAGAATTCTCAATT 57.246 29.630 4.57 0.00 0.00 2.32
606 643 7.617225 CCCGTATATCACAATTATAGACCCAA 58.383 38.462 0.00 0.00 0.00 4.12
607 644 6.351541 GCCCGTATATCACAATTATAGACCCA 60.352 42.308 0.00 0.00 0.00 4.51
608 645 6.047231 GCCCGTATATCACAATTATAGACCC 58.953 44.000 0.00 0.00 0.00 4.46
610 647 8.542497 TTTGCCCGTATATCACAATTATAGAC 57.458 34.615 0.00 0.00 0.00 2.59
627 3180 4.502962 CCATGTGATTTTTATTTGCCCGT 58.497 39.130 0.00 0.00 0.00 5.28
907 3547 1.225855 TGCCAATTATTAGCTCGGCG 58.774 50.000 0.00 0.00 42.57 6.46
915 3555 2.422597 CCGCCGAGATGCCAATTATTA 58.577 47.619 0.00 0.00 0.00 0.98
948 3588 9.833917 GTTTATATAGTGGGGGATATTAAGCTC 57.166 37.037 0.00 0.00 0.00 4.09
981 3622 1.671742 GCGAGGGTTCTCAGTTCCA 59.328 57.895 0.00 0.00 39.95 3.53
1068 3709 1.169661 CGATCAGGAGGACGAGGAGG 61.170 65.000 0.00 0.00 0.00 4.30
1083 3724 2.512515 GTGCTGGACAGGGCGATC 60.513 66.667 1.01 0.00 0.00 3.69
1084 3725 4.101448 GGTGCTGGACAGGGCGAT 62.101 66.667 0.77 0.00 0.00 4.58
1102 3743 2.044946 ACGGGAGGAAGGCAATGC 60.045 61.111 0.00 0.00 0.00 3.56
1129 3770 0.904649 TCATGGTTGTCTCCATCGCT 59.095 50.000 0.00 0.00 45.23 4.93
1175 3816 1.746239 CCATGCGCTGACATCCACA 60.746 57.895 9.73 0.00 0.00 4.17
1198 3839 1.110518 TCGGCGGCACTATGGTATGA 61.111 55.000 10.53 0.00 0.00 2.15
1200 3841 0.826256 TCTCGGCGGCACTATGGTAT 60.826 55.000 10.53 0.00 0.00 2.73
1226 3867 4.783667 GGTACACCTCAAACCGCA 57.216 55.556 0.00 0.00 0.00 5.69
1272 3913 2.050350 CCTCTCGGCGTCCCTGTTA 61.050 63.158 6.85 0.00 0.00 2.41
1311 3952 3.582743 GAGGTCGGTGAACTCGTTT 57.417 52.632 0.00 0.00 36.63 3.60
1332 3973 1.069022 CGTGCCATGAACTCCTTGTTG 60.069 52.381 0.00 0.00 39.30 3.33
1336 3977 0.981183 TACCGTGCCATGAACTCCTT 59.019 50.000 0.00 0.00 0.00 3.36
1350 3991 1.112113 AAGCATCTCCGACATACCGT 58.888 50.000 0.00 0.00 0.00 4.83
1362 4003 1.526917 GGCGCCACCATAAGCATCT 60.527 57.895 24.80 0.00 38.86 2.90
1364 4005 2.275089 TGGCGCCACCATAAGCAT 59.725 55.556 29.03 0.00 46.36 3.79
1391 4032 5.452496 CCGACCAAAGTAGTGATGAGATCAT 60.452 44.000 0.00 0.00 42.04 2.45
1394 4035 4.023980 TCCGACCAAAGTAGTGATGAGAT 58.976 43.478 0.00 0.00 0.00 2.75
1410 4051 1.433879 CTCCGTGACATCTCCGACC 59.566 63.158 0.00 0.00 0.00 4.79
1422 4063 1.276421 GATGATATCACCCCCTCCGTG 59.724 57.143 7.78 0.00 0.00 4.94
1423 4064 1.645710 GATGATATCACCCCCTCCGT 58.354 55.000 7.78 0.00 0.00 4.69
1425 4066 2.044793 TGGATGATATCACCCCCTCC 57.955 55.000 13.98 13.59 0.00 4.30
1433 4074 7.148255 CCTCGACAAAGTTTTTGGATGATATCA 60.148 37.037 8.10 8.10 0.00 2.15
1435 4076 6.884295 TCCTCGACAAAGTTTTTGGATGATAT 59.116 34.615 6.51 0.00 0.00 1.63
1446 4087 2.299297 ACGATCCTCCTCGACAAAGTTT 59.701 45.455 0.00 0.00 41.12 2.66
1450 4091 4.730949 AATTACGATCCTCCTCGACAAA 57.269 40.909 0.00 0.00 41.12 2.83
1451 4092 4.158949 TCAAATTACGATCCTCCTCGACAA 59.841 41.667 0.00 0.00 41.12 3.18
1452 4093 3.697542 TCAAATTACGATCCTCCTCGACA 59.302 43.478 0.00 0.00 41.12 4.35
1533 4174 0.967380 CCCCTTGTTGCTTAGCAGGG 60.967 60.000 18.88 18.88 40.61 4.45
1589 4230 6.613755 GTTTCATGTGTGTAACCAGTAACT 57.386 37.500 0.00 0.00 34.36 2.24
1606 4247 2.888834 GTGCAACAAGGTGGTTTCAT 57.111 45.000 0.00 0.00 36.32 2.57
1664 4305 3.303135 AAGCTCTCCACCGTCGCA 61.303 61.111 0.00 0.00 0.00 5.10
1694 4335 4.392166 TCTACCAGCTCCCCGCCA 62.392 66.667 0.00 0.00 40.39 5.69
1718 4359 2.917227 TCCACGAGCTCCTGCACA 60.917 61.111 8.47 0.00 42.74 4.57
1743 4384 2.962569 CGAGCTGAAGACACCCGA 59.037 61.111 0.00 0.00 0.00 5.14
1751 4392 3.494378 CCACATGGCGAGCTGAAG 58.506 61.111 0.00 0.00 0.00 3.02
1777 4418 2.727123 TTGAAGTGCACTCTTGGGAA 57.273 45.000 21.95 4.08 0.00 3.97
1778 4419 2.507484 CATTGAAGTGCACTCTTGGGA 58.493 47.619 21.95 3.84 0.00 4.37
1787 4428 5.725325 TTGATTTGATCCATTGAAGTGCA 57.275 34.783 0.00 0.00 0.00 4.57
1793 4434 4.381825 CCGCCTTTTGATTTGATCCATTGA 60.382 41.667 0.00 0.00 0.00 2.57
1794 4435 3.866910 CCGCCTTTTGATTTGATCCATTG 59.133 43.478 0.00 0.00 0.00 2.82
2039 4681 2.916703 TTTTGGCTGGTGGCGCAT 60.917 55.556 10.83 0.00 42.94 4.73
2043 4685 2.421314 GTGGTTTTGGCTGGTGGC 59.579 61.111 0.00 0.00 40.90 5.01
2070 4712 2.182030 GACTCCGAAGCCGACCAG 59.818 66.667 0.00 0.00 38.22 4.00
2114 4756 2.359975 CCCCACGAGTTCTTGGCC 60.360 66.667 0.00 0.00 34.27 5.36
2133 4775 1.592223 CCTTCTGACCCCACGTCTC 59.408 63.158 0.00 0.00 42.49 3.36
2227 4869 9.249457 CAATATGCCGATATACTAACTACATGG 57.751 37.037 0.00 0.00 0.00 3.66
2252 4894 1.744320 ATATACCCAGCGCGCAGACA 61.744 55.000 35.10 14.44 0.00 3.41
2280 4926 4.932268 TTTAGTTGCACATTACGCTACC 57.068 40.909 0.00 0.00 36.01 3.18
2321 4967 3.364441 GCCAGGATGTGCGTGCAA 61.364 61.111 0.00 0.00 0.00 4.08
2333 4979 0.745486 TCATCATTCGCACAGCCAGG 60.745 55.000 0.00 0.00 0.00 4.45
2347 4993 2.224354 CCATCCATCCGTGTCATCATCA 60.224 50.000 0.00 0.00 0.00 3.07
2355 5001 1.348008 ATCCAGCCATCCATCCGTGT 61.348 55.000 0.00 0.00 0.00 4.49
2378 5030 4.023726 ACGGTGCCAAAGTAATTTAGGA 57.976 40.909 7.88 0.00 0.00 2.94
2379 5031 5.820947 AGATACGGTGCCAAAGTAATTTAGG 59.179 40.000 0.00 0.00 0.00 2.69
2428 5082 5.300034 CCCACGTAGGACTACACACATATAA 59.700 44.000 9.87 0.00 41.22 0.98
2440 5094 1.275291 CATCACAACCCACGTAGGACT 59.725 52.381 7.14 0.00 41.22 3.85
2442 5096 1.001520 CACATCACAACCCACGTAGGA 59.998 52.381 7.14 0.00 41.22 2.94
2451 5105 4.142491 TGACAAAACAGACACATCACAACC 60.142 41.667 0.00 0.00 0.00 3.77
2453 5107 4.096231 CCTGACAAAACAGACACATCACAA 59.904 41.667 0.00 0.00 39.94 3.33
2462 5116 4.574828 ACATGTACACCTGACAAAACAGAC 59.425 41.667 0.00 0.00 39.94 3.51
2464 5118 5.499139 AACATGTACACCTGACAAAACAG 57.501 39.130 0.00 0.00 37.61 3.16
2481 5135 7.436080 AGAACTTGCACTTACATTTCAAACATG 59.564 33.333 0.00 0.00 0.00 3.21
2482 5136 7.491682 AGAACTTGCACTTACATTTCAAACAT 58.508 30.769 0.00 0.00 0.00 2.71
2515 5169 0.604511 CCGTAGGCAAACGTTTCCCT 60.605 55.000 26.05 26.05 46.14 4.20
2516 5170 1.871077 CCGTAGGCAAACGTTTCCC 59.129 57.895 13.37 13.37 46.14 3.97
2535 5189 2.747855 GAAGCTTGGGCCGGACTG 60.748 66.667 7.57 0.00 39.73 3.51
2536 5190 4.394712 CGAAGCTTGGGCCGGACT 62.395 66.667 7.57 0.00 39.73 3.85
2544 5198 4.394712 AGTCCGGCCGAAGCTTGG 62.395 66.667 30.73 8.04 39.73 3.61
2547 5201 2.997897 AAGAGTCCGGCCGAAGCT 60.998 61.111 30.73 20.94 39.73 3.74
2548 5202 2.509561 GAAGAGTCCGGCCGAAGC 60.510 66.667 30.73 16.14 38.76 3.86
2550 5204 4.430765 GCGAAGAGTCCGGCCGAA 62.431 66.667 30.73 1.10 0.00 4.30
2552 5206 4.856607 GAGCGAAGAGTCCGGCCG 62.857 72.222 21.04 21.04 0.00 6.13
2553 5207 4.856607 CGAGCGAAGAGTCCGGCC 62.857 72.222 0.00 0.00 0.00 6.13
2555 5209 3.743091 GAGCGAGCGAAGAGTCCGG 62.743 68.421 0.00 0.00 0.00 5.14
2556 5210 2.277628 GAGCGAGCGAAGAGTCCG 60.278 66.667 0.00 0.00 0.00 4.79
2557 5211 2.103340 GGAGCGAGCGAAGAGTCC 59.897 66.667 0.00 0.00 0.00 3.85
2558 5212 2.103340 GGGAGCGAGCGAAGAGTC 59.897 66.667 0.00 0.00 0.00 3.36
2559 5213 2.276116 TTGGGAGCGAGCGAAGAGT 61.276 57.895 0.00 0.00 0.00 3.24
2560 5214 1.807573 GTTGGGAGCGAGCGAAGAG 60.808 63.158 0.00 0.00 0.00 2.85
2561 5215 2.261671 GTTGGGAGCGAGCGAAGA 59.738 61.111 0.00 0.00 0.00 2.87
2562 5216 2.048222 TGTTGGGAGCGAGCGAAG 60.048 61.111 0.00 0.00 0.00 3.79
2563 5217 2.357034 GTGTTGGGAGCGAGCGAA 60.357 61.111 0.00 0.00 0.00 4.70
2564 5218 4.373116 GGTGTTGGGAGCGAGCGA 62.373 66.667 0.00 0.00 0.00 4.93
2567 5221 3.316573 GAGGGGTGTTGGGAGCGAG 62.317 68.421 0.00 0.00 0.00 5.03
2571 5225 3.636231 TGCGAGGGGTGTTGGGAG 61.636 66.667 0.00 0.00 0.00 4.30
2572 5226 3.948719 GTGCGAGGGGTGTTGGGA 61.949 66.667 0.00 0.00 0.00 4.37
2573 5227 4.263572 TGTGCGAGGGGTGTTGGG 62.264 66.667 0.00 0.00 0.00 4.12
2574 5228 2.978010 GTGTGCGAGGGGTGTTGG 60.978 66.667 0.00 0.00 0.00 3.77
2581 5235 4.263572 TTGGTGGGTGTGCGAGGG 62.264 66.667 0.00 0.00 0.00 4.30
2582 5236 2.978010 GTTGGTGGGTGTGCGAGG 60.978 66.667 0.00 0.00 0.00 4.63
2583 5237 3.345808 CGTTGGTGGGTGTGCGAG 61.346 66.667 0.00 0.00 0.00 5.03
2587 5241 3.286751 CTGGCGTTGGTGGGTGTG 61.287 66.667 0.00 0.00 0.00 3.82
2595 5249 4.431131 ATGGCTCCCTGGCGTTGG 62.431 66.667 0.00 0.00 45.14 3.77
2596 5250 3.136123 CATGGCTCCCTGGCGTTG 61.136 66.667 0.00 0.00 45.14 4.10
2601 5255 2.826777 AAAGACGCATGGCTCCCTGG 62.827 60.000 0.00 0.00 0.00 4.45
2603 5257 1.377725 CAAAGACGCATGGCTCCCT 60.378 57.895 0.00 0.00 0.00 4.20
2604 5258 3.056313 GCAAAGACGCATGGCTCCC 62.056 63.158 0.00 0.00 0.00 4.30
2605 5259 2.486966 GCAAAGACGCATGGCTCC 59.513 61.111 0.00 0.00 0.00 4.70
2606 5260 2.486966 GGCAAAGACGCATGGCTC 59.513 61.111 0.00 0.00 38.91 4.70
2609 5263 4.481112 GCCGGCAAAGACGCATGG 62.481 66.667 24.80 0.00 29.68 3.66
2610 5264 4.481112 GGCCGGCAAAGACGCATG 62.481 66.667 30.85 0.00 29.68 4.06
2618 5272 4.724501 TATGCGTGGGCCGGCAAA 62.725 61.111 30.85 13.24 43.26 3.68
2619 5273 4.497984 ATATGCGTGGGCCGGCAA 62.498 61.111 30.85 13.68 43.26 4.52
2631 5285 2.763448 AGGATAAGGAGGAGCGATATGC 59.237 50.000 0.00 0.00 46.98 3.14
2632 5286 6.068010 AGATAGGATAAGGAGGAGCGATATG 58.932 44.000 0.00 0.00 0.00 1.78
2633 5287 6.274322 AGATAGGATAAGGAGGAGCGATAT 57.726 41.667 0.00 0.00 0.00 1.63
2635 5289 4.601406 AGATAGGATAAGGAGGAGCGAT 57.399 45.455 0.00 0.00 0.00 4.58
2636 5290 4.043561 AGAAGATAGGATAAGGAGGAGCGA 59.956 45.833 0.00 0.00 0.00 4.93
2637 5291 4.340617 AGAAGATAGGATAAGGAGGAGCG 58.659 47.826 0.00 0.00 0.00 5.03
2638 5292 6.016555 AGAAGAAGATAGGATAAGGAGGAGC 58.983 44.000 0.00 0.00 0.00 4.70
2639 5293 7.178451 GGAAGAAGAAGATAGGATAAGGAGGAG 59.822 44.444 0.00 0.00 0.00 3.69
2640 5294 7.013834 GGAAGAAGAAGATAGGATAAGGAGGA 58.986 42.308 0.00 0.00 0.00 3.71
2642 5296 7.178451 GGAGGAAGAAGAAGATAGGATAAGGAG 59.822 44.444 0.00 0.00 0.00 3.69
2644 5298 6.212589 GGGAGGAAGAAGAAGATAGGATAAGG 59.787 46.154 0.00 0.00 0.00 2.69
2647 5301 5.326069 CGGGAGGAAGAAGAAGATAGGATA 58.674 45.833 0.00 0.00 0.00 2.59
2649 5303 3.567397 CGGGAGGAAGAAGAAGATAGGA 58.433 50.000 0.00 0.00 0.00 2.94
2650 5304 2.036604 GCGGGAGGAAGAAGAAGATAGG 59.963 54.545 0.00 0.00 0.00 2.57
2651 5305 2.287909 CGCGGGAGGAAGAAGAAGATAG 60.288 54.545 0.00 0.00 0.00 2.08
2652 5306 1.681793 CGCGGGAGGAAGAAGAAGATA 59.318 52.381 0.00 0.00 0.00 1.98
2655 5309 0.246635 TTCGCGGGAGGAAGAAGAAG 59.753 55.000 6.13 0.00 0.00 2.85
2657 5311 0.898789 AGTTCGCGGGAGGAAGAAGA 60.899 55.000 6.13 0.00 0.00 2.87
2658 5312 0.737715 CAGTTCGCGGGAGGAAGAAG 60.738 60.000 6.13 0.00 0.00 2.85
2660 5314 1.874345 GACAGTTCGCGGGAGGAAGA 61.874 60.000 6.13 0.00 0.00 2.87
2661 5315 1.446272 GACAGTTCGCGGGAGGAAG 60.446 63.158 6.13 0.00 0.00 3.46
2662 5316 1.874345 GAGACAGTTCGCGGGAGGAA 61.874 60.000 6.13 0.00 0.00 3.36
2663 5317 2.282958 AGACAGTTCGCGGGAGGA 60.283 61.111 6.13 0.00 0.00 3.71
2664 5318 2.182030 GAGACAGTTCGCGGGAGG 59.818 66.667 6.13 0.00 0.00 4.30
2665 5319 1.137825 GAGAGACAGTTCGCGGGAG 59.862 63.158 6.13 0.00 0.00 4.30
2666 5320 1.303398 AGAGAGACAGTTCGCGGGA 60.303 57.895 6.13 0.00 0.00 5.14
2668 5322 0.098025 GAGAGAGAGACAGTTCGCGG 59.902 60.000 6.13 0.00 0.00 6.46
2669 5323 0.098025 GGAGAGAGAGACAGTTCGCG 59.902 60.000 0.00 0.00 0.00 5.87
2670 5324 0.454196 GGGAGAGAGAGACAGTTCGC 59.546 60.000 0.00 0.00 0.00 4.70
2671 5325 0.730265 CGGGAGAGAGAGACAGTTCG 59.270 60.000 0.00 0.00 0.00 3.95
2672 5326 2.116827 TCGGGAGAGAGAGACAGTTC 57.883 55.000 0.00 0.00 0.00 3.01
2673 5327 2.374184 CATCGGGAGAGAGAGACAGTT 58.626 52.381 0.00 0.00 45.48 3.16
2674 5328 2.021723 GCATCGGGAGAGAGAGACAGT 61.022 57.143 0.00 0.00 45.48 3.55
2675 5329 0.667993 GCATCGGGAGAGAGAGACAG 59.332 60.000 0.00 0.00 45.48 3.51
2676 5330 1.098129 CGCATCGGGAGAGAGAGACA 61.098 60.000 0.00 0.00 45.48 3.41
2677 5331 1.098712 ACGCATCGGGAGAGAGAGAC 61.099 60.000 0.00 0.00 45.48 3.36
2678 5332 1.098129 CACGCATCGGGAGAGAGAGA 61.098 60.000 0.00 0.00 45.48 3.10
2679 5333 1.358402 CACGCATCGGGAGAGAGAG 59.642 63.158 0.00 0.00 45.48 3.20
2680 5334 2.775856 GCACGCATCGGGAGAGAGA 61.776 63.158 0.00 0.00 45.48 3.10
2681 5335 2.279120 GCACGCATCGGGAGAGAG 60.279 66.667 0.00 0.00 45.48 3.20
2682 5336 2.755876 AGCACGCATCGGGAGAGA 60.756 61.111 0.00 0.00 45.48 3.10
2683 5337 2.584418 CAGCACGCATCGGGAGAG 60.584 66.667 0.00 0.00 45.48 3.20
2684 5338 4.819761 GCAGCACGCATCGGGAGA 62.820 66.667 0.00 0.00 46.90 3.71
2688 5342 4.246206 CATGGCAGCACGCATCGG 62.246 66.667 0.00 0.00 45.17 4.18
2689 5343 4.246206 CCATGGCAGCACGCATCG 62.246 66.667 0.00 0.00 45.17 3.84
2690 5344 4.564116 GCCATGGCAGCACGCATC 62.564 66.667 32.08 0.00 45.17 3.91
2712 5366 1.974265 TCAGAGATAGTGAGGCGGAG 58.026 55.000 0.00 0.00 0.00 4.63
2713 5367 2.509569 GATCAGAGATAGTGAGGCGGA 58.490 52.381 0.00 0.00 0.00 5.54
2714 5368 1.198867 CGATCAGAGATAGTGAGGCGG 59.801 57.143 0.00 0.00 0.00 6.13
2715 5369 1.876799 ACGATCAGAGATAGTGAGGCG 59.123 52.381 0.00 0.00 34.00 5.52
2716 5370 2.095969 CGACGATCAGAGATAGTGAGGC 60.096 54.545 0.00 0.00 0.00 4.70
2717 5371 3.135225 ACGACGATCAGAGATAGTGAGG 58.865 50.000 0.00 0.00 0.00 3.86
2718 5372 3.121160 CGACGACGATCAGAGATAGTGAG 60.121 52.174 0.00 0.00 42.66 3.51
2719 5373 2.795470 CGACGACGATCAGAGATAGTGA 59.205 50.000 0.00 0.00 42.66 3.41
2720 5374 2.660631 GCGACGACGATCAGAGATAGTG 60.661 54.545 12.29 0.00 42.66 2.74
2721 5375 1.527736 GCGACGACGATCAGAGATAGT 59.472 52.381 12.29 0.00 42.66 2.12
2722 5376 1.527311 TGCGACGACGATCAGAGATAG 59.473 52.381 12.29 0.00 42.66 2.08
2723 5377 1.578583 TGCGACGACGATCAGAGATA 58.421 50.000 12.29 0.00 42.66 1.98
2724 5378 0.733150 TTGCGACGACGATCAGAGAT 59.267 50.000 12.29 0.00 42.66 2.75
2725 5379 0.733150 ATTGCGACGACGATCAGAGA 59.267 50.000 12.29 0.00 42.66 3.10
2726 5380 0.842613 CATTGCGACGACGATCAGAG 59.157 55.000 12.29 0.00 42.66 3.35
2727 5381 0.525455 CCATTGCGACGACGATCAGA 60.525 55.000 12.29 0.00 42.66 3.27
2728 5382 1.920051 CCATTGCGACGACGATCAG 59.080 57.895 12.29 0.00 42.66 2.90
2729 5383 2.164663 GCCATTGCGACGACGATCA 61.165 57.895 12.29 0.00 42.66 2.92
2730 5384 1.878522 AGCCATTGCGACGACGATC 60.879 57.895 12.29 0.00 44.33 3.69
2731 5385 2.167219 CAGCCATTGCGACGACGAT 61.167 57.895 12.29 0.00 44.33 3.73
2732 5386 2.809174 CAGCCATTGCGACGACGA 60.809 61.111 12.29 0.00 44.33 4.20
2733 5387 4.505217 GCAGCCATTGCGACGACG 62.505 66.667 2.12 2.12 44.09 5.12
2752 5406 1.152567 ATCAGAGAGAGGGGCGGAG 60.153 63.158 0.00 0.00 0.00 4.63
2753 5407 1.152652 GATCAGAGAGAGGGGCGGA 60.153 63.158 0.00 0.00 0.00 5.54
2754 5408 2.206536 GGATCAGAGAGAGGGGCGG 61.207 68.421 0.00 0.00 0.00 6.13
2755 5409 1.152567 AGGATCAGAGAGAGGGGCG 60.153 63.158 0.00 0.00 0.00 6.13
2756 5410 1.178534 CGAGGATCAGAGAGAGGGGC 61.179 65.000 0.00 0.00 33.17 5.80
2757 5411 0.184933 ACGAGGATCAGAGAGAGGGG 59.815 60.000 0.00 0.00 33.17 4.79
2758 5412 1.604604 GACGAGGATCAGAGAGAGGG 58.395 60.000 0.00 0.00 33.17 4.30
2759 5413 1.225855 CGACGAGGATCAGAGAGAGG 58.774 60.000 0.00 0.00 33.17 3.69
2760 5414 0.586319 GCGACGAGGATCAGAGAGAG 59.414 60.000 0.00 0.00 33.17 3.20
2761 5415 0.816018 GGCGACGAGGATCAGAGAGA 60.816 60.000 0.00 0.00 33.17 3.10
2762 5416 1.098129 TGGCGACGAGGATCAGAGAG 61.098 60.000 0.00 0.00 33.17 3.20
2763 5417 0.466372 ATGGCGACGAGGATCAGAGA 60.466 55.000 0.00 0.00 33.17 3.10
2764 5418 0.318529 CATGGCGACGAGGATCAGAG 60.319 60.000 0.00 0.00 33.17 3.35
2765 5419 1.735973 CATGGCGACGAGGATCAGA 59.264 57.895 0.00 0.00 33.17 3.27
2766 5420 1.300465 CCATGGCGACGAGGATCAG 60.300 63.158 0.00 0.00 33.17 2.90
2767 5421 2.814604 CCATGGCGACGAGGATCA 59.185 61.111 0.00 0.00 33.17 2.92
2768 5422 2.663188 GCCATGGCGACGAGGATC 60.663 66.667 23.48 0.00 0.00 3.36
2769 5423 4.241555 GGCCATGGCGACGAGGAT 62.242 66.667 29.90 0.00 43.06 3.24
2790 5444 1.528309 GGGAGAGAGAGAGGCGGAG 60.528 68.421 0.00 0.00 0.00 4.63
2791 5445 1.650242 ATGGGAGAGAGAGAGGCGGA 61.650 60.000 0.00 0.00 0.00 5.54
2792 5446 1.152567 ATGGGAGAGAGAGAGGCGG 60.153 63.158 0.00 0.00 0.00 6.13
2793 5447 0.467106 TGATGGGAGAGAGAGAGGCG 60.467 60.000 0.00 0.00 0.00 5.52
2794 5448 1.895131 GATGATGGGAGAGAGAGAGGC 59.105 57.143 0.00 0.00 0.00 4.70
2795 5449 2.161855 CGATGATGGGAGAGAGAGAGG 58.838 57.143 0.00 0.00 0.00 3.69
2808 5462 2.610694 GGCCATGGCGACGATGATG 61.611 63.158 29.90 0.00 43.06 3.07
2827 5481 0.459489 AGAATGAGAGGAGAGTGCGC 59.541 55.000 0.00 0.00 0.00 6.09
2829 5483 1.412343 GGGAGAATGAGAGGAGAGTGC 59.588 57.143 0.00 0.00 0.00 4.40
2831 5485 1.648568 TGGGGAGAATGAGAGGAGAGT 59.351 52.381 0.00 0.00 0.00 3.24
2839 5493 0.883814 GCGAGCATGGGGAGAATGAG 60.884 60.000 0.00 0.00 0.00 2.90
2843 5498 3.797353 GGGCGAGCATGGGGAGAA 61.797 66.667 0.00 0.00 0.00 2.87
2859 5514 1.228510 GAAAGGAGGAGGCCATGGG 59.771 63.158 15.13 0.00 0.00 4.00
2869 5524 2.269241 GCGGGTGGAGAAAGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
2905 5560 6.362248 ACTGGTGGAAAAGAAAAGCTTACTA 58.638 36.000 0.00 0.00 35.24 1.82
2908 5563 4.583073 GGACTGGTGGAAAAGAAAAGCTTA 59.417 41.667 0.00 0.00 35.24 3.09
2929 5584 2.288091 CGTTGGATGCAACATTTGTGGA 60.288 45.455 26.79 0.00 34.94 4.02
2939 5594 1.246649 AATGTGAGCGTTGGATGCAA 58.753 45.000 0.00 0.00 31.07 4.08
2941 5596 2.352503 AAAATGTGAGCGTTGGATGC 57.647 45.000 0.00 0.00 0.00 3.91
2958 5613 1.652012 CCGCGAGTTCCAGCAAAAA 59.348 52.632 8.23 0.00 0.00 1.94
2961 5616 3.621805 TCCCGCGAGTTCCAGCAA 61.622 61.111 8.23 0.00 0.00 3.91
2962 5617 4.373116 GTCCCGCGAGTTCCAGCA 62.373 66.667 8.23 0.00 0.00 4.41
2963 5618 4.070552 AGTCCCGCGAGTTCCAGC 62.071 66.667 8.23 0.00 0.00 4.85
2965 5620 4.373116 GCAGTCCCGCGAGTTCCA 62.373 66.667 8.23 0.00 0.00 3.53
3007 5662 0.979665 CCTCCCTGAACAAGAGCTCA 59.020 55.000 17.77 0.00 0.00 4.26
3021 5676 3.381388 AAAAACATGGCCTCCTCCC 57.619 52.632 3.32 0.00 0.00 4.30
3041 5696 2.415090 GCAGGTGCAGCTTCATTAACAG 60.415 50.000 17.45 2.50 41.59 3.16
3042 5697 1.541147 GCAGGTGCAGCTTCATTAACA 59.459 47.619 17.45 0.00 41.59 2.41
3043 5698 1.135286 GGCAGGTGCAGCTTCATTAAC 60.135 52.381 17.45 0.00 44.36 2.01
3044 5699 1.176527 GGCAGGTGCAGCTTCATTAA 58.823 50.000 17.45 0.00 44.36 1.40
3082 5739 3.872511 TCCAGCAAAACATAATGCCAG 57.127 42.857 0.00 0.00 43.57 4.85
3100 5757 0.667184 CAAATGGCGTTGCTGGTTCC 60.667 55.000 0.00 0.00 0.00 3.62
3133 5790 3.260884 ACCTCGTCTTCCAGCAAAATCTA 59.739 43.478 0.00 0.00 0.00 1.98
3142 5799 1.134901 CGTCGACCTCGTCTTCCAG 59.865 63.158 10.58 0.00 40.80 3.86
3164 5821 1.370051 GGTTCCAGCAAAACGTCGC 60.370 57.895 0.00 0.00 0.00 5.19
3182 5840 3.254166 GGTTGTAGCATCCATATTGGCTG 59.746 47.826 0.00 0.00 37.47 4.85
3186 5844 3.058708 CGCTGGTTGTAGCATCCATATTG 60.059 47.826 0.00 0.00 43.87 1.90
3195 5853 0.037697 ATTCGTCGCTGGTTGTAGCA 60.038 50.000 0.00 0.00 43.87 3.49
3215 5873 5.810080 AAAGAGTGACCAGTAGTAGCTTT 57.190 39.130 0.00 0.00 0.00 3.51
3219 5877 6.586844 GCAGTAAAAAGAGTGACCAGTAGTAG 59.413 42.308 0.00 0.00 0.00 2.57
3229 5887 5.525745 TGAACGATTGCAGTAAAAAGAGTGA 59.474 36.000 0.00 0.00 0.00 3.41
3230 5888 5.747565 TGAACGATTGCAGTAAAAAGAGTG 58.252 37.500 0.00 0.00 0.00 3.51
3274 5932 3.708734 AAAACGACTTCGCCGCCG 61.709 61.111 0.00 0.00 44.43 6.46
3276 5934 2.127383 CCAAAACGACTTCGCCGC 60.127 61.111 0.00 0.00 44.43 6.53
3280 5938 1.843753 GTTGCAACCAAAACGACTTCG 59.156 47.619 19.15 0.00 37.82 3.79
3293 6200 2.113910 AAAACGACGATGGTTGCAAC 57.886 45.000 21.59 21.59 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.