Multiple sequence alignment - TraesCS1D01G031400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G031400 chr1D 100.000 5715 0 0 1 5715 12310013 12315727 0.000000e+00 10554.0
1 TraesCS1D01G031400 chr1D 80.251 319 45 14 655 959 12298419 12298733 2.070000e-54 224.0
2 TraesCS1D01G031400 chr1D 84.951 206 12 7 981 1173 11973171 11973370 2.100000e-44 191.0
3 TraesCS1D01G031400 chr1D 95.327 107 5 0 2450 2556 490538222 490538116 2.740000e-38 171.0
4 TraesCS1D01G031400 chr1D 81.522 184 25 8 28 209 228022449 228022625 5.970000e-30 143.0
5 TraesCS1D01G031400 chr1D 78.286 175 25 11 72 241 208190650 208190484 3.640000e-17 100.0
6 TraesCS1D01G031400 chr1B 94.196 2464 98 19 2555 4991 17790203 17792648 0.000000e+00 3716.0
7 TraesCS1D01G031400 chr1B 85.922 1996 160 59 522 2461 17788274 17790204 0.000000e+00 2017.0
8 TraesCS1D01G031400 chr1B 90.930 441 27 7 4992 5419 17792614 17793054 1.070000e-161 580.0
9 TraesCS1D01G031400 chr1B 90.244 123 10 2 2457 2578 568530942 568530821 5.930000e-35 159.0
10 TraesCS1D01G031400 chr1A 93.649 2472 115 18 2555 4991 14141127 14143591 0.000000e+00 3657.0
11 TraesCS1D01G031400 chr1A 89.898 1178 80 23 1296 2461 14139978 14141128 0.000000e+00 1480.0
12 TraesCS1D01G031400 chr1A 91.784 426 27 2 4992 5417 14143557 14143974 2.290000e-163 586.0
13 TraesCS1D01G031400 chr1A 87.532 393 29 8 788 1178 14139545 14139919 2.450000e-118 436.0
14 TraesCS1D01G031400 chr1A 86.869 198 17 4 979 1176 14068256 14068444 4.490000e-51 213.0
15 TraesCS1D01G031400 chr1A 92.241 116 8 1 2457 2572 516778201 516778087 4.580000e-36 163.0
16 TraesCS1D01G031400 chr1A 87.879 99 10 2 529 625 14138922 14139020 1.300000e-21 115.0
17 TraesCS1D01G031400 chr1A 87.179 78 7 3 457 532 264988089 264988165 1.020000e-12 86.1
18 TraesCS1D01G031400 chr7D 97.706 523 11 1 1 522 87751995 87751473 0.000000e+00 898.0
19 TraesCS1D01G031400 chr7D 94.336 512 10 2 1 511 2015481 2014988 0.000000e+00 767.0
20 TraesCS1D01G031400 chr7D 84.507 71 9 2 5418 5487 18689547 18689616 1.030000e-07 69.4
21 TraesCS1D01G031400 chr3D 97.519 524 11 2 1 523 289810246 289809724 0.000000e+00 894.0
22 TraesCS1D01G031400 chr6A 89.504 524 47 5 1 523 437496984 437496468 0.000000e+00 656.0
23 TraesCS1D01G031400 chr6A 86.364 66 5 4 5425 5487 129336834 129336898 1.030000e-07 69.4
24 TraesCS1D01G031400 chr2A 88.484 521 51 6 1 520 385327468 385326956 6.290000e-174 621.0
25 TraesCS1D01G031400 chr7A 95.039 383 18 1 139 521 44436537 44436918 8.190000e-168 601.0
26 TraesCS1D01G031400 chr7A 86.111 324 27 7 200 523 533507267 533507572 3.300000e-87 333.0
27 TraesCS1D01G031400 chr7A 96.154 104 3 1 2460 2562 73807269 73807166 9.850000e-38 169.0
28 TraesCS1D01G031400 chr7A 93.396 106 7 0 1 106 533507111 533507216 2.130000e-34 158.0
29 TraesCS1D01G031400 chr7A 93.478 46 3 0 5445 5490 106820069 106820024 1.030000e-07 69.4
30 TraesCS1D01G031400 chrUn 86.057 459 37 11 66 523 71655098 71655530 8.670000e-128 468.0
31 TraesCS1D01G031400 chr4D 97.059 102 3 0 2456 2557 13198382 13198281 7.610000e-39 172.0
32 TraesCS1D01G031400 chr4D 76.433 157 22 12 83 236 70877993 70877849 2.860000e-08 71.3
33 TraesCS1D01G031400 chr4B 97.980 99 2 0 2458 2556 664775716 664775618 7.610000e-39 172.0
34 TraesCS1D01G031400 chr7B 95.238 105 5 0 2456 2560 588874913 588875017 3.540000e-37 167.0
35 TraesCS1D01G031400 chr7B 93.478 46 3 0 5445 5490 191777258 191777213 1.030000e-07 69.4
36 TraesCS1D01G031400 chr7B 86.364 66 5 4 5425 5487 274319085 274319149 1.030000e-07 69.4
37 TraesCS1D01G031400 chr7B 86.364 66 5 4 5425 5487 489148481 489148545 1.030000e-07 69.4
38 TraesCS1D01G031400 chr2D 94.495 109 5 1 2451 2559 643762737 643762844 3.540000e-37 167.0
39 TraesCS1D01G031400 chr2D 86.620 142 10 7 2420 2556 305909949 305909812 1.280000e-31 148.0
40 TraesCS1D01G031400 chr2D 96.970 33 1 0 5523 5555 446850224 446850256 8.000000e-04 56.5
41 TraesCS1D01G031400 chr6B 86.154 65 7 2 5425 5487 299051474 299051538 1.030000e-07 69.4
42 TraesCS1D01G031400 chr5B 86.364 66 5 4 5425 5487 638765331 638765395 1.030000e-07 69.4
43 TraesCS1D01G031400 chr3B 86.364 66 5 4 5425 5487 50957195 50957259 1.030000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G031400 chr1D 12310013 12315727 5714 False 10554.000000 10554 100.000000 1 5715 1 chr1D.!!$F3 5714
1 TraesCS1D01G031400 chr1B 17788274 17793054 4780 False 2104.333333 3716 90.349333 522 5419 3 chr1B.!!$F1 4897
2 TraesCS1D01G031400 chr1A 14138922 14143974 5052 False 1254.800000 3657 90.148400 529 5417 5 chr1A.!!$F3 4888
3 TraesCS1D01G031400 chr7D 87751473 87751995 522 True 898.000000 898 97.706000 1 522 1 chr7D.!!$R2 521
4 TraesCS1D01G031400 chr3D 289809724 289810246 522 True 894.000000 894 97.519000 1 523 1 chr3D.!!$R1 522
5 TraesCS1D01G031400 chr6A 437496468 437496984 516 True 656.000000 656 89.504000 1 523 1 chr6A.!!$R1 522
6 TraesCS1D01G031400 chr2A 385326956 385327468 512 True 621.000000 621 88.484000 1 520 1 chr2A.!!$R1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 1292 0.383124 GTTCAAACGCGACTCAGTGC 60.383 55.0 15.93 0.00 0.00 4.40 F
1371 1796 0.105039 CCAAGCTGGGACGAGTATCC 59.895 60.0 0.00 0.00 38.13 2.59 F
1514 1946 0.184451 CTGCAAGCATAGGGATGGGT 59.816 55.0 0.00 0.00 33.26 4.51 F
2371 2828 0.394352 GGCTTGTCCCTGGGTATGTG 60.394 60.0 13.56 2.15 0.00 3.21 F
3048 3510 0.539518 GAAGCCTTCTGAGAGGTCCC 59.460 60.0 0.00 0.00 39.11 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2828 0.835941 ATCTGCTCTCACCACCCATC 59.164 55.000 0.00 0.00 0.00 3.51 R
3048 3510 1.153349 GCTTCTTCCCTAGGGCACG 60.153 63.158 24.42 13.25 34.68 5.34 R
3200 3662 3.552684 GCAAGCATGTAAAGTTCCAAGCA 60.553 43.478 0.00 0.00 0.00 3.91 R
3697 4174 0.044092 TGGGAATGTCCAGGCCTCTA 59.956 55.000 0.00 0.00 38.64 2.43 R
4934 5441 0.317854 GCAGTTGCTTCCAAACGGAC 60.318 55.000 0.00 0.00 38.21 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.276421 CAGGCGAAGAGGAGGAAGAAA 59.724 52.381 0.00 0.00 0.00 2.52
45 46 1.893801 GAGGAGGAAGAAACTCACCGA 59.106 52.381 0.00 0.00 36.70 4.69
241 243 0.547954 GAGGAGGTTCCAGGAAGGGT 60.548 60.000 0.54 0.00 39.61 4.34
398 400 3.892588 TCGACTGGCCCAGTTTAAATTTT 59.107 39.130 19.36 0.00 45.44 1.82
405 407 6.836242 TGGCCCAGTTTAAATTTTCATTTCT 58.164 32.000 0.00 0.00 34.29 2.52
499 501 6.546972 TTTATGTGTTAATGAAGACGTGCA 57.453 33.333 0.00 0.00 31.46 4.57
532 534 8.173130 GTGCACGCTTACTAGTAATAACAAAAT 58.827 33.333 15.57 0.00 0.00 1.82
533 535 8.172484 TGCACGCTTACTAGTAATAACAAAATG 58.828 33.333 15.57 7.36 0.00 2.32
554 557 3.444034 TGAATACTCTTCACCCTGACGAG 59.556 47.826 4.62 4.62 45.11 4.18
601 604 7.630242 TGGTGTATTTTCTTTGATCTCCATC 57.370 36.000 0.00 0.00 0.00 3.51
634 637 4.907809 TCATATTTTTGTACGGGTCACCA 58.092 39.130 0.00 0.00 36.13 4.17
636 639 1.310904 TTTTTGTACGGGTCACCAGC 58.689 50.000 0.00 0.00 36.13 4.85
642 645 0.958382 TACGGGTCACCAGCAATTGC 60.958 55.000 23.05 23.05 42.49 3.56
655 658 2.100584 AGCAATTGCAACTTGTTTCCGA 59.899 40.909 30.89 0.00 45.16 4.55
685 1061 1.577328 AATCGCAGCTTGTTCACCCG 61.577 55.000 0.00 0.00 0.00 5.28
687 1063 2.946762 GCAGCTTGTTCACCCGAC 59.053 61.111 0.00 0.00 0.00 4.79
702 1078 5.227152 TCACCCGACATATAATTCACATCG 58.773 41.667 0.00 0.00 0.00 3.84
704 1080 4.988540 ACCCGACATATAATTCACATCGTG 59.011 41.667 0.00 0.00 34.45 4.35
726 1102 7.228507 TCGTGTTCATATGATTTCATTTAGGGG 59.771 37.037 6.17 0.00 37.76 4.79
727 1103 7.522073 CGTGTTCATATGATTTCATTTAGGGGG 60.522 40.741 6.17 0.00 37.76 5.40
768 1144 2.575279 AGCAGGGACATCTTGTTCATCT 59.425 45.455 0.00 0.00 0.00 2.90
771 1147 3.937706 CAGGGACATCTTGTTCATCTGAC 59.062 47.826 0.00 0.00 0.00 3.51
775 1151 4.872691 GGACATCTTGTTCATCTGACGAAT 59.127 41.667 0.00 0.00 0.00 3.34
783 1159 1.135112 TCATCTGACGAATGTGGGTCG 60.135 52.381 0.00 0.00 44.10 4.79
785 1161 1.183030 TCTGACGAATGTGGGTCGGT 61.183 55.000 0.00 0.00 42.82 4.69
824 1217 2.997463 TGGGGAGGGGTCTTATTTTTCA 59.003 45.455 0.00 0.00 0.00 2.69
832 1225 6.131961 AGGGGTCTTATTTTTCATGGATGAG 58.868 40.000 0.00 0.00 38.19 2.90
846 1239 1.363744 GATGAGTTCTGGGCTTGACG 58.636 55.000 0.00 0.00 0.00 4.35
855 1248 2.430367 GGCTTGACGAAGGTGGGT 59.570 61.111 0.00 0.00 0.00 4.51
867 1260 0.966920 AGGTGGGTCTAACGTGACAG 59.033 55.000 8.15 0.00 38.61 3.51
881 1274 4.990910 ACAGAGCCCAGGCCCAGT 62.991 66.667 4.70 0.00 43.17 4.00
883 1276 3.334054 AGAGCCCAGGCCCAGTTC 61.334 66.667 4.70 0.00 43.17 3.01
886 1279 2.203625 GCCCAGGCCCAGTTCAAA 60.204 61.111 0.00 0.00 34.56 2.69
888 1281 2.268076 CCCAGGCCCAGTTCAAACG 61.268 63.158 0.00 0.00 0.00 3.60
899 1292 0.383124 GTTCAAACGCGACTCAGTGC 60.383 55.000 15.93 0.00 0.00 4.40
900 1293 0.529773 TTCAAACGCGACTCAGTGCT 60.530 50.000 15.93 0.00 0.00 4.40
915 1308 1.001048 AGTGCTGTACGTAAACGCTCA 60.001 47.619 0.00 1.65 44.43 4.26
932 1325 1.081442 CACGGAAGGCGGAAAAAGC 60.081 57.895 0.00 0.00 0.00 3.51
944 1337 2.163509 GGAAAAAGCTCTCCCCTGTTC 58.836 52.381 0.00 0.00 0.00 3.18
950 1343 1.334384 GCTCTCCCCTGTTCCCTCTC 61.334 65.000 0.00 0.00 0.00 3.20
977 1372 0.694783 CCCTAAACCCCTCCCCTCTC 60.695 65.000 0.00 0.00 0.00 3.20
1088 1495 1.135972 CAAGGCAAATGAAGACGACGG 60.136 52.381 0.00 0.00 0.00 4.79
1180 1605 4.179599 CCTCCCTCCCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1183 1608 4.179599 CCCTCCCTCCCCCTCTCC 62.180 77.778 0.00 0.00 0.00 3.71
1184 1609 3.368501 CCTCCCTCCCCCTCTCCA 61.369 72.222 0.00 0.00 0.00 3.86
1185 1610 2.787866 CTCCCTCCCCCTCTCCAA 59.212 66.667 0.00 0.00 0.00 3.53
1186 1611 1.690985 CTCCCTCCCCCTCTCCAAC 60.691 68.421 0.00 0.00 0.00 3.77
1188 1613 1.690985 CCCTCCCCCTCTCCAACTC 60.691 68.421 0.00 0.00 0.00 3.01
1189 1614 1.690985 CCTCCCCCTCTCCAACTCC 60.691 68.421 0.00 0.00 0.00 3.85
1192 1617 2.124996 CCCCTCTCCAACTCCCCA 59.875 66.667 0.00 0.00 0.00 4.96
1194 1619 1.639635 CCCCTCTCCAACTCCCCATG 61.640 65.000 0.00 0.00 0.00 3.66
1196 1621 0.543749 CCTCTCCAACTCCCCATGTC 59.456 60.000 0.00 0.00 0.00 3.06
1197 1622 1.577736 CTCTCCAACTCCCCATGTCT 58.422 55.000 0.00 0.00 0.00 3.41
1199 1624 0.543749 CTCCAACTCCCCATGTCTCC 59.456 60.000 0.00 0.00 0.00 3.71
1200 1625 1.221840 CCAACTCCCCATGTCTCCG 59.778 63.158 0.00 0.00 0.00 4.63
1208 1633 2.887568 CATGTCTCCGTGGCTCGC 60.888 66.667 2.96 0.00 38.35 5.03
1209 1634 3.071206 ATGTCTCCGTGGCTCGCT 61.071 61.111 2.96 0.00 38.35 4.93
1225 1650 1.290639 GCTAGCCGCCTCCATCTAC 59.709 63.158 2.29 0.00 0.00 2.59
1226 1651 1.968310 CTAGCCGCCTCCATCTACC 59.032 63.158 0.00 0.00 0.00 3.18
1228 1653 2.635787 TAGCCGCCTCCATCTACCGT 62.636 60.000 0.00 0.00 0.00 4.83
1230 1655 2.331805 CGCCTCCATCTACCGTCG 59.668 66.667 0.00 0.00 0.00 5.12
1238 1663 1.536072 CCATCTACCGTCGTCCATGTG 60.536 57.143 0.00 0.00 0.00 3.21
1244 1669 1.202604 ACCGTCGTCCATGTGTTTTCT 60.203 47.619 0.00 0.00 0.00 2.52
1265 1690 0.321671 CTTCCTGTTCGAGCTTCCCA 59.678 55.000 0.00 0.00 0.00 4.37
1280 1705 2.169789 CCCATCGAAGCAGCGACTG 61.170 63.158 2.99 2.92 43.79 3.51
1283 1708 0.851495 CATCGAAGCAGCGACTGATC 59.149 55.000 10.46 6.92 43.79 2.92
1304 1729 4.679662 TCGAGGCAATTAGTTAGCAGTAC 58.320 43.478 0.00 0.00 0.00 2.73
1311 1736 4.602340 ATTAGTTAGCAGTACCCCATCG 57.398 45.455 0.00 0.00 0.00 3.84
1329 1754 5.297776 CCCATCGAATTAGTGCAGAAAGAAT 59.702 40.000 0.00 0.00 0.00 2.40
1330 1755 6.197276 CCATCGAATTAGTGCAGAAAGAATG 58.803 40.000 0.00 0.00 0.00 2.67
1370 1795 3.669354 CCAAGCTGGGACGAGTATC 57.331 57.895 0.00 0.00 32.67 2.24
1371 1796 0.105039 CCAAGCTGGGACGAGTATCC 59.895 60.000 0.00 0.00 38.13 2.59
1405 1837 1.398390 GTTGCTGGGTCAAATCTAGCG 59.602 52.381 0.00 0.00 37.20 4.26
1419 1851 3.510388 TCTAGCGGAAGAACTCACATG 57.490 47.619 0.00 0.00 0.00 3.21
1436 1868 3.670055 CACATGTTTCGGTGAGATTTTGC 59.330 43.478 0.00 0.00 37.18 3.68
1437 1869 3.317711 ACATGTTTCGGTGAGATTTTGCA 59.682 39.130 0.00 0.00 0.00 4.08
1441 1873 6.266168 TGTTTCGGTGAGATTTTGCATATT 57.734 33.333 0.00 0.00 0.00 1.28
1444 1876 3.631686 TCGGTGAGATTTTGCATATTGGG 59.368 43.478 0.00 0.00 0.00 4.12
1445 1877 3.631686 CGGTGAGATTTTGCATATTGGGA 59.368 43.478 0.00 0.00 0.00 4.37
1446 1878 4.498009 CGGTGAGATTTTGCATATTGGGAC 60.498 45.833 0.00 0.00 0.00 4.46
1488 1920 0.970427 TGTATCCTGCCGAGCACAGA 60.970 55.000 0.00 0.00 37.32 3.41
1489 1921 0.528684 GTATCCTGCCGAGCACAGAC 60.529 60.000 0.00 0.00 37.32 3.51
1490 1922 0.970427 TATCCTGCCGAGCACAGACA 60.970 55.000 0.00 0.00 37.32 3.41
1491 1923 2.513026 ATCCTGCCGAGCACAGACAC 62.513 60.000 0.00 0.00 37.32 3.67
1492 1924 2.029518 CTGCCGAGCACAGACACA 59.970 61.111 0.00 0.00 37.32 3.72
1493 1925 2.025969 CTGCCGAGCACAGACACAG 61.026 63.158 0.00 0.00 37.32 3.66
1514 1946 0.184451 CTGCAAGCATAGGGATGGGT 59.816 55.000 0.00 0.00 33.26 4.51
1517 1949 1.686115 GCAAGCATAGGGATGGGTTGT 60.686 52.381 0.00 0.00 40.92 3.32
1559 1995 8.667592 AACTAATGTACTTCTTACTCCCTTCT 57.332 34.615 0.00 0.00 0.00 2.85
1575 2014 3.760684 CCCTTCTGCTTTGCTGATAGTTT 59.239 43.478 0.34 0.00 36.48 2.66
1576 2015 4.943705 CCCTTCTGCTTTGCTGATAGTTTA 59.056 41.667 0.34 0.00 36.48 2.01
1577 2016 5.163713 CCCTTCTGCTTTGCTGATAGTTTAC 60.164 44.000 0.34 0.00 36.48 2.01
1578 2017 5.163713 CCTTCTGCTTTGCTGATAGTTTACC 60.164 44.000 0.34 0.00 36.48 2.85
1580 2019 3.670625 TGCTTTGCTGATAGTTTACCGT 58.329 40.909 0.00 0.00 0.00 4.83
1597 2036 1.937899 CCGTTTTCGTTTCTCTGGTGT 59.062 47.619 0.00 0.00 42.35 4.16
1704 2143 4.401519 CCATCAGAACCTCATTTTGCTCAT 59.598 41.667 0.00 0.00 0.00 2.90
1793 2232 4.421479 CTCGTGAAGGCGGCGACT 62.421 66.667 10.88 10.88 0.00 4.18
1965 2407 7.332926 GTGGATATGCTCTGTTTATCATGGTAG 59.667 40.741 0.00 0.00 0.00 3.18
1971 2413 7.592938 TGCTCTGTTTATCATGGTAGTTTTTG 58.407 34.615 0.00 0.00 0.00 2.44
1972 2414 7.029563 GCTCTGTTTATCATGGTAGTTTTTGG 58.970 38.462 0.00 0.00 0.00 3.28
1973 2415 7.461182 TCTGTTTATCATGGTAGTTTTTGGG 57.539 36.000 0.00 0.00 0.00 4.12
1984 2426 7.619512 TGGTAGTTTTTGGGGTCATTAAATT 57.380 32.000 0.00 0.00 0.00 1.82
2004 2450 5.852282 ATTTGGTTGGTGGTTATATCTGC 57.148 39.130 0.00 0.00 0.00 4.26
2009 2455 4.130118 GTTGGTGGTTATATCTGCTGGAG 58.870 47.826 0.00 0.00 0.00 3.86
2028 2474 4.286032 TGGAGTTCAGCTATGTTACCAGTT 59.714 41.667 0.00 0.00 0.00 3.16
2030 2476 6.014070 TGGAGTTCAGCTATGTTACCAGTTTA 60.014 38.462 0.00 0.00 0.00 2.01
2031 2477 7.048512 GGAGTTCAGCTATGTTACCAGTTTAT 58.951 38.462 0.00 0.00 0.00 1.40
2032 2478 8.202137 GGAGTTCAGCTATGTTACCAGTTTATA 58.798 37.037 0.00 0.00 0.00 0.98
2033 2479 9.765795 GAGTTCAGCTATGTTACCAGTTTATAT 57.234 33.333 0.00 0.00 0.00 0.86
2114 2568 7.881775 AGGTCCAAAAGAAACCATATCATAC 57.118 36.000 0.00 0.00 35.43 2.39
2119 2573 8.739039 TCCAAAAGAAACCATATCATACAACTG 58.261 33.333 0.00 0.00 0.00 3.16
2224 2680 8.865420 TGTAAATCACTCTAGTAGTTGTCTCT 57.135 34.615 0.00 0.00 35.76 3.10
2296 2753 0.875728 TGGTAATTGTTCCAACGCGG 59.124 50.000 12.47 0.00 0.00 6.46
2323 2780 2.099756 GTGCTTGCAGGTTTATGGGATC 59.900 50.000 0.00 0.00 0.00 3.36
2324 2781 2.291475 TGCTTGCAGGTTTATGGGATCA 60.291 45.455 0.00 0.00 0.00 2.92
2371 2828 0.394352 GGCTTGTCCCTGGGTATGTG 60.394 60.000 13.56 2.15 0.00 3.21
2424 2881 3.877508 GCAAGACTGCGGAAAGGTATATT 59.122 43.478 0.00 0.00 39.20 1.28
2464 2921 7.183580 GTTGATGCAACTTCTCATATACTCC 57.816 40.000 0.00 0.00 40.73 3.85
2465 2922 5.858381 TGATGCAACTTCTCATATACTCCC 58.142 41.667 0.00 0.00 0.00 4.30
2466 2923 5.604231 TGATGCAACTTCTCATATACTCCCT 59.396 40.000 0.00 0.00 0.00 4.20
2467 2924 5.537300 TGCAACTTCTCATATACTCCCTC 57.463 43.478 0.00 0.00 0.00 4.30
2468 2925 4.345257 TGCAACTTCTCATATACTCCCTCC 59.655 45.833 0.00 0.00 0.00 4.30
2469 2926 4.559704 GCAACTTCTCATATACTCCCTCCG 60.560 50.000 0.00 0.00 0.00 4.63
2470 2927 4.456662 ACTTCTCATATACTCCCTCCGT 57.543 45.455 0.00 0.00 0.00 4.69
2471 2928 4.400120 ACTTCTCATATACTCCCTCCGTC 58.600 47.826 0.00 0.00 0.00 4.79
2472 2929 3.436577 TCTCATATACTCCCTCCGTCC 57.563 52.381 0.00 0.00 0.00 4.79
2473 2930 2.041350 TCTCATATACTCCCTCCGTCCC 59.959 54.545 0.00 0.00 0.00 4.46
2474 2931 1.784593 TCATATACTCCCTCCGTCCCA 59.215 52.381 0.00 0.00 0.00 4.37
2475 2932 2.178325 TCATATACTCCCTCCGTCCCAA 59.822 50.000 0.00 0.00 0.00 4.12
2476 2933 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2477 2934 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2478 2935 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2479 2936 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2480 2937 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2481 2938 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2482 2939 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2483 2940 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2484 2941 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2485 2942 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2486 2943 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2487 2944 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2488 2945 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2489 2946 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2490 2947 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2491 2948 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2492 2949 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2493 2950 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2494 2951 7.041644 CGTCCCAAAATAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
2495 2952 8.290325 GTCCCAAAATAAGTGTCTCAACTTTAG 58.710 37.037 0.00 0.00 40.77 1.85
2496 2953 7.996644 TCCCAAAATAAGTGTCTCAACTTTAGT 59.003 33.333 0.00 0.00 40.77 2.24
2497 2954 9.280174 CCCAAAATAAGTGTCTCAACTTTAGTA 57.720 33.333 0.00 0.00 40.77 1.82
2504 2961 8.788325 AAGTGTCTCAACTTTAGTACAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2505 2962 8.197988 AGTGTCTCAACTTTAGTACAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
2506 2963 7.822822 AGTGTCTCAACTTTAGTACAACTTTGT 59.177 33.333 0.00 0.00 44.86 2.83
2507 2964 9.090692 GTGTCTCAACTTTAGTACAACTTTGTA 57.909 33.333 0.00 0.00 42.35 2.41
2532 2989 8.461249 ACTAGAGTTAGTACAAAGTTGAGACA 57.539 34.615 0.00 0.00 38.35 3.41
2533 2990 8.351461 ACTAGAGTTAGTACAAAGTTGAGACAC 58.649 37.037 0.00 0.00 38.35 3.67
2534 2991 7.349412 AGAGTTAGTACAAAGTTGAGACACT 57.651 36.000 0.00 0.00 0.00 3.55
2535 2992 7.783042 AGAGTTAGTACAAAGTTGAGACACTT 58.217 34.615 0.00 0.00 38.74 3.16
2536 2993 8.910944 AGAGTTAGTACAAAGTTGAGACACTTA 58.089 33.333 0.00 0.00 35.87 2.24
2537 2994 9.694137 GAGTTAGTACAAAGTTGAGACACTTAT 57.306 33.333 0.00 0.00 35.87 1.73
2542 2999 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2543 3000 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2544 3001 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2545 3002 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2546 3003 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2547 3004 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2548 3005 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2549 3006 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2550 3007 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2551 3008 2.640826 ACACTTATTTTGGGACGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
2552 3009 3.073356 ACACTTATTTTGGGACGGAGGAA 59.927 43.478 0.00 0.00 0.00 3.36
2553 3010 3.689649 CACTTATTTTGGGACGGAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
2554 3011 3.329814 ACTTATTTTGGGACGGAGGAAGT 59.670 43.478 0.00 0.00 0.00 3.01
2555 3012 4.533311 ACTTATTTTGGGACGGAGGAAGTA 59.467 41.667 0.00 0.00 0.00 2.24
2750 3212 8.443160 GTCATAAACTCATCATTTTCTTGACGA 58.557 33.333 0.00 0.00 0.00 4.20
2752 3214 9.778993 CATAAACTCATCATTTTCTTGACGATT 57.221 29.630 0.00 0.00 0.00 3.34
2785 3247 8.274322 ACAAGATATCTTATCCAATGGACACAA 58.726 33.333 17.53 0.00 31.27 3.33
2978 3440 0.661020 ACGAAAAGGTGAACCGCTTG 59.339 50.000 0.00 0.00 42.08 4.01
2993 3455 2.490115 CCGCTTGGCCAACATTAGTTTA 59.510 45.455 16.05 0.00 35.28 2.01
3005 3467 7.368059 CCAACATTAGTTTAAAGAACCCAGTC 58.632 38.462 0.00 0.00 35.28 3.51
3048 3510 0.539518 GAAGCCTTCTGAGAGGTCCC 59.460 60.000 0.00 0.00 39.11 4.46
3098 3560 6.349777 CCTTATTATCTGACGATGAGGAGGAC 60.350 46.154 6.95 0.00 29.75 3.85
3134 3596 5.530915 GCACAATAATATAGTGGAACCTGCA 59.469 40.000 0.00 0.00 37.80 4.41
3200 3662 5.010213 TGTTAAAGGTAGCGGAAATTTGCTT 59.990 36.000 8.18 0.00 42.48 3.91
3240 3702 1.339610 TGCCATGTGTTGCTTTGGTAC 59.660 47.619 0.00 0.00 0.00 3.34
3460 3937 9.007901 CCTGAGAATTGAGTTAGTTTCATCTTT 57.992 33.333 0.00 0.00 0.00 2.52
3685 4162 6.699575 AAATCTGCAATCCTTGTATGTACC 57.300 37.500 0.00 0.00 0.00 3.34
3697 4174 2.093711 TGTATGTACCGATGTTGCTGCT 60.094 45.455 0.00 0.00 0.00 4.24
3704 4181 1.156645 CGATGTTGCTGCTAGAGGCC 61.157 60.000 0.00 0.00 40.92 5.19
3715 4192 0.761802 CTAGAGGCCTGGACATTCCC 59.238 60.000 12.00 0.00 35.03 3.97
3886 4363 4.297299 ACTGAATGAAGCAAACACACAG 57.703 40.909 0.00 0.00 33.55 3.66
3943 4420 6.374333 ACACTGTTTAGCTCTTTCTTGTGAAA 59.626 34.615 0.00 0.00 39.59 2.69
3944 4421 7.067494 ACACTGTTTAGCTCTTTCTTGTGAAAT 59.933 33.333 0.00 0.00 40.85 2.17
4043 4522 2.093235 GCACTAGCATCTTCTTCTGGGT 60.093 50.000 0.00 0.00 41.58 4.51
4050 4529 3.314635 GCATCTTCTTCTGGGTATGCTTG 59.685 47.826 0.00 0.00 37.37 4.01
4147 4626 3.945285 TGTTTCTCCAACCTGTTGAACTC 59.055 43.478 11.47 0.00 42.93 3.01
4174 4653 5.394224 ACTTGAAAGACCTAGAGCTACAC 57.606 43.478 0.00 0.00 0.00 2.90
4189 4668 2.683867 GCTACACGGTGTATCTCTGACT 59.316 50.000 20.35 0.00 31.66 3.41
4231 4710 2.825861 TAGACGGTTTCCCTGTGAAC 57.174 50.000 0.00 0.00 31.05 3.18
4234 4713 1.070105 CGGTTTCCCTGTGAACGGA 59.930 57.895 0.00 0.00 31.05 4.69
4367 4850 3.470709 CTTCCTTCAGTTGACTCTTGCA 58.529 45.455 0.00 0.00 0.00 4.08
4395 4886 1.731720 AGAACAGCTCCGATTGCTTC 58.268 50.000 0.00 0.00 38.92 3.86
4422 4913 9.449550 TTTATTGTAAAATATCATGCTTCTGCG 57.550 29.630 0.00 0.00 43.34 5.18
4446 4937 6.436261 GGATCTCAACAAATGTGCTATCATG 58.564 40.000 0.00 0.00 0.00 3.07
4480 4975 2.547642 GGCCACAACAAATAAGCTTGCA 60.548 45.455 9.86 0.00 0.00 4.08
4687 5182 0.396811 AAGGACAAGGACCGACCAAG 59.603 55.000 0.00 0.00 42.04 3.61
4708 5203 2.243810 CGGAGAAAATTCCCCACCAAA 58.756 47.619 0.00 0.00 33.46 3.28
4727 5222 5.784906 ACCAAAAAGTGAATTCCCATATGGT 59.215 36.000 20.46 7.87 34.77 3.55
4844 5341 7.607991 AGCTAGACAACTAATTTACTGTGCAAT 59.392 33.333 0.00 0.00 0.00 3.56
4934 5441 0.109086 ACCTCATGCTCGTCTGTTCG 60.109 55.000 0.00 0.00 0.00 3.95
4991 5498 7.423598 CACGAAATAACAAAATCTCACGATGAG 59.576 37.037 8.24 8.24 45.59 2.90
4992 5499 6.409185 CGAAATAACAAAATCTCACGATGAGC 59.591 38.462 9.34 0.00 43.95 4.26
4993 5500 6.992063 AATAACAAAATCTCACGATGAGCT 57.008 33.333 9.34 0.00 43.95 4.09
4994 5501 6.992063 ATAACAAAATCTCACGATGAGCTT 57.008 33.333 9.34 4.77 43.95 3.74
4995 5502 4.675190 ACAAAATCTCACGATGAGCTTG 57.325 40.909 9.34 12.63 43.95 4.01
4996 5503 4.318332 ACAAAATCTCACGATGAGCTTGA 58.682 39.130 18.88 0.00 43.95 3.02
4997 5504 4.756642 ACAAAATCTCACGATGAGCTTGAA 59.243 37.500 18.88 4.72 43.95 2.69
4998 5505 5.239306 ACAAAATCTCACGATGAGCTTGAAA 59.761 36.000 18.88 4.26 43.95 2.69
4999 5506 6.072286 ACAAAATCTCACGATGAGCTTGAAAT 60.072 34.615 18.88 5.68 43.95 2.17
5000 5507 5.731599 AATCTCACGATGAGCTTGAAATC 57.268 39.130 9.34 0.00 43.95 2.17
5001 5508 4.192429 TCTCACGATGAGCTTGAAATCA 57.808 40.909 9.34 0.00 43.95 2.57
5002 5509 4.763073 TCTCACGATGAGCTTGAAATCAT 58.237 39.130 9.34 0.00 43.95 2.45
5003 5510 4.569564 TCTCACGATGAGCTTGAAATCATG 59.430 41.667 9.34 0.00 43.95 3.07
5004 5511 4.506758 TCACGATGAGCTTGAAATCATGA 58.493 39.130 0.00 0.00 36.30 3.07
5005 5512 4.937015 TCACGATGAGCTTGAAATCATGAA 59.063 37.500 0.00 0.00 36.30 2.57
5006 5513 5.412286 TCACGATGAGCTTGAAATCATGAAA 59.588 36.000 0.00 0.00 36.30 2.69
5007 5514 6.094464 TCACGATGAGCTTGAAATCATGAAAT 59.906 34.615 0.00 0.00 36.30 2.17
5008 5515 7.280652 TCACGATGAGCTTGAAATCATGAAATA 59.719 33.333 0.00 0.00 36.30 1.40
5009 5516 7.911727 CACGATGAGCTTGAAATCATGAAATAA 59.088 33.333 0.00 0.00 36.30 1.40
5010 5517 7.912250 ACGATGAGCTTGAAATCATGAAATAAC 59.088 33.333 0.00 0.00 36.30 1.89
5011 5518 7.911727 CGATGAGCTTGAAATCATGAAATAACA 59.088 33.333 0.00 0.00 36.30 2.41
5012 5519 9.577110 GATGAGCTTGAAATCATGAAATAACAA 57.423 29.630 0.00 2.16 36.30 2.83
5013 5520 9.932207 ATGAGCTTGAAATCATGAAATAACAAA 57.068 25.926 0.00 0.00 34.88 2.83
5014 5521 9.761504 TGAGCTTGAAATCATGAAATAACAAAA 57.238 25.926 0.00 0.00 0.00 2.44
5119 5626 3.796504 GAACATGTTCTGCCAACAACTGG 60.797 47.826 27.66 0.00 41.13 4.00
5160 5668 7.636150 ATCAAAATTACACTGGGATTCAGAG 57.364 36.000 0.00 0.00 46.18 3.35
5168 5676 3.688185 CACTGGGATTCAGAGACAACATG 59.312 47.826 0.00 0.00 46.18 3.21
5185 5694 1.667724 CATGACTGCCTGAACCGATTC 59.332 52.381 0.00 0.00 35.18 2.52
5186 5695 0.036388 TGACTGCCTGAACCGATTCC 60.036 55.000 0.00 0.00 33.49 3.01
5260 5775 1.705002 TTCCGCCAATCCGATCCCAT 61.705 55.000 0.00 0.00 0.00 4.00
5319 5834 3.118408 AGTGAGCCAAACTGTACACAAGA 60.118 43.478 0.00 0.00 0.00 3.02
5341 5856 2.585330 TCCATGAAAGCTGCAACAAGA 58.415 42.857 1.02 0.00 0.00 3.02
5352 5872 4.114794 GCTGCAACAAGAAACAACAATCT 58.885 39.130 0.00 0.00 0.00 2.40
5367 5887 7.624360 ACAACAATCTTCTTGTCAGTTTGTA 57.376 32.000 0.00 0.00 34.49 2.41
5401 5921 6.264518 TCATCTGCTGATTGAATATGCATTGT 59.735 34.615 3.54 0.00 33.02 2.71
5406 5926 6.754675 TGCTGATTGAATATGCATTGTCAAAG 59.245 34.615 21.65 17.51 0.00 2.77
5419 5939 5.570589 GCATTGTCAAAGAAGTAATGTGCTC 59.429 40.000 0.00 0.00 32.75 4.26
5420 5940 5.689383 TTGTCAAAGAAGTAATGTGCTCC 57.311 39.130 0.00 0.00 0.00 4.70
5421 5941 4.072131 TGTCAAAGAAGTAATGTGCTCCC 58.928 43.478 0.00 0.00 0.00 4.30
5422 5942 4.202461 TGTCAAAGAAGTAATGTGCTCCCT 60.202 41.667 0.00 0.00 0.00 4.20
5423 5943 4.393371 GTCAAAGAAGTAATGTGCTCCCTC 59.607 45.833 0.00 0.00 0.00 4.30
5424 5944 4.287067 TCAAAGAAGTAATGTGCTCCCTCT 59.713 41.667 0.00 0.00 0.00 3.69
5425 5945 3.902881 AGAAGTAATGTGCTCCCTCTG 57.097 47.619 0.00 0.00 0.00 3.35
5426 5946 3.177228 AGAAGTAATGTGCTCCCTCTGT 58.823 45.455 0.00 0.00 0.00 3.41
5427 5947 3.196685 AGAAGTAATGTGCTCCCTCTGTC 59.803 47.826 0.00 0.00 0.00 3.51
5428 5948 1.834263 AGTAATGTGCTCCCTCTGTCC 59.166 52.381 0.00 0.00 0.00 4.02
5429 5949 0.824109 TAATGTGCTCCCTCTGTCCG 59.176 55.000 0.00 0.00 0.00 4.79
5430 5950 1.903877 AATGTGCTCCCTCTGTCCGG 61.904 60.000 0.00 0.00 0.00 5.14
5431 5951 2.680352 GTGCTCCCTCTGTCCGGA 60.680 66.667 0.00 0.00 0.00 5.14
5432 5952 2.119611 TGCTCCCTCTGTCCGGAA 59.880 61.111 5.23 0.00 0.00 4.30
5433 5953 1.535444 TGCTCCCTCTGTCCGGAAA 60.535 57.895 5.23 0.00 0.00 3.13
5434 5954 0.909610 TGCTCCCTCTGTCCGGAAAT 60.910 55.000 5.23 0.00 0.00 2.17
5435 5955 1.120530 GCTCCCTCTGTCCGGAAATA 58.879 55.000 5.23 0.00 0.00 1.40
5436 5956 1.202545 GCTCCCTCTGTCCGGAAATAC 60.203 57.143 5.23 0.00 0.00 1.89
5437 5957 2.389715 CTCCCTCTGTCCGGAAATACT 58.610 52.381 5.23 0.00 0.00 2.12
5438 5958 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
5439 5959 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
5440 5960 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
5441 5961 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
5442 5962 3.179830 CTCTGTCCGGAAATACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
5443 5963 2.821378 TCTGTCCGGAAATACTTGTCGA 59.179 45.455 5.23 0.00 0.00 4.20
5444 5964 3.256383 TCTGTCCGGAAATACTTGTCGAA 59.744 43.478 5.23 0.00 0.00 3.71
5445 5965 3.581755 TGTCCGGAAATACTTGTCGAAG 58.418 45.455 5.23 0.00 35.07 3.79
5446 5966 3.256383 TGTCCGGAAATACTTGTCGAAGA 59.744 43.478 5.23 0.00 32.98 2.87
5479 5999 6.332735 TGTCTAGATACATCCATTTCTCCG 57.667 41.667 0.00 0.00 0.00 4.63
5480 6000 6.068670 TGTCTAGATACATCCATTTCTCCGA 58.931 40.000 0.00 0.00 0.00 4.55
5481 6001 6.016192 TGTCTAGATACATCCATTTCTCCGAC 60.016 42.308 0.00 0.00 0.00 4.79
5482 6002 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
5483 6003 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
5484 6004 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
5485 6005 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
5486 6006 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
5487 6007 4.504858 ACATCCATTTCTCCGACAAGTAC 58.495 43.478 0.00 0.00 0.00 2.73
5488 6008 4.223032 ACATCCATTTCTCCGACAAGTACT 59.777 41.667 0.00 0.00 0.00 2.73
5489 6009 4.884668 TCCATTTCTCCGACAAGTACTT 57.115 40.909 1.12 1.12 0.00 2.24
5490 6010 4.566004 TCCATTTCTCCGACAAGTACTTG 58.434 43.478 29.76 29.76 45.58 3.16
5491 6011 3.125316 CCATTTCTCCGACAAGTACTTGC 59.875 47.826 30.97 22.56 44.03 4.01
5492 6012 3.746045 TTTCTCCGACAAGTACTTGCT 57.254 42.857 30.97 19.76 44.03 3.91
5493 6013 4.859304 TTTCTCCGACAAGTACTTGCTA 57.141 40.909 30.97 15.25 44.03 3.49
5494 6014 5.401531 TTTCTCCGACAAGTACTTGCTAT 57.598 39.130 30.97 15.29 44.03 2.97
5495 6015 4.371855 TCTCCGACAAGTACTTGCTATG 57.628 45.455 30.97 18.97 44.03 2.23
5496 6016 3.762288 TCTCCGACAAGTACTTGCTATGT 59.238 43.478 30.97 15.46 44.03 2.29
5497 6017 3.845178 TCCGACAAGTACTTGCTATGTG 58.155 45.455 30.97 15.84 44.03 3.21
5498 6018 2.348666 CCGACAAGTACTTGCTATGTGC 59.651 50.000 30.97 13.21 44.03 4.57
5499 6019 2.348666 CGACAAGTACTTGCTATGTGCC 59.651 50.000 30.97 11.82 44.03 5.01
5500 6020 3.600388 GACAAGTACTTGCTATGTGCCT 58.400 45.455 30.97 11.78 44.03 4.75
5501 6021 4.003648 GACAAGTACTTGCTATGTGCCTT 58.996 43.478 30.97 11.08 44.03 4.35
5502 6022 3.753272 ACAAGTACTTGCTATGTGCCTTG 59.247 43.478 30.97 8.03 44.03 3.61
5503 6023 3.703001 AGTACTTGCTATGTGCCTTGT 57.297 42.857 0.00 0.00 42.00 3.16
5504 6024 3.600388 AGTACTTGCTATGTGCCTTGTC 58.400 45.455 0.00 0.00 42.00 3.18
5505 6025 1.826385 ACTTGCTATGTGCCTTGTCC 58.174 50.000 0.00 0.00 42.00 4.02
5506 6026 1.073763 ACTTGCTATGTGCCTTGTCCA 59.926 47.619 0.00 0.00 42.00 4.02
5507 6027 2.161855 CTTGCTATGTGCCTTGTCCAA 58.838 47.619 0.00 0.00 42.00 3.53
5508 6028 1.825090 TGCTATGTGCCTTGTCCAAG 58.175 50.000 0.00 0.00 42.00 3.61
5509 6029 1.350684 TGCTATGTGCCTTGTCCAAGA 59.649 47.619 8.59 0.00 42.00 3.02
5510 6030 2.224744 TGCTATGTGCCTTGTCCAAGAA 60.225 45.455 8.59 0.00 42.00 2.52
5511 6031 2.819608 GCTATGTGCCTTGTCCAAGAAA 59.180 45.455 8.59 0.00 40.79 2.52
5512 6032 3.445096 GCTATGTGCCTTGTCCAAGAAAT 59.555 43.478 8.59 0.29 40.79 2.17
5513 6033 3.947910 ATGTGCCTTGTCCAAGAAATG 57.052 42.857 8.59 0.00 40.79 2.32
5514 6034 7.622967 GCTATGTGCCTTGTCCAAGAAATGG 62.623 48.000 8.59 0.00 42.73 3.16
5552 6072 9.722184 AATATGTCAGATACATCCATTTCTCTG 57.278 33.333 0.00 0.00 46.15 3.35
5553 6073 6.796785 TGTCAGATACATCCATTTCTCTGA 57.203 37.500 0.00 0.00 37.41 3.27
5554 6074 7.215789 ATGTCAGATACATCCATTTCTCTGAC 58.784 38.462 18.72 18.72 46.15 3.51
5555 6075 6.796785 TCAGATACATCCATTTCTCTGACA 57.203 37.500 0.00 0.00 35.46 3.58
5556 6076 7.186570 TCAGATACATCCATTTCTCTGACAA 57.813 36.000 0.00 0.00 35.46 3.18
5557 6077 7.270779 TCAGATACATCCATTTCTCTGACAAG 58.729 38.462 0.00 0.00 35.46 3.16
5558 6078 6.482641 CAGATACATCCATTTCTCTGACAAGG 59.517 42.308 0.00 0.00 33.59 3.61
5559 6079 4.916041 ACATCCATTTCTCTGACAAGGA 57.084 40.909 0.00 0.00 0.00 3.36
5560 6080 4.583871 ACATCCATTTCTCTGACAAGGAC 58.416 43.478 0.00 0.00 0.00 3.85
5561 6081 4.288105 ACATCCATTTCTCTGACAAGGACT 59.712 41.667 0.00 0.00 0.00 3.85
5562 6082 4.982241 TCCATTTCTCTGACAAGGACTT 57.018 40.909 0.00 0.00 0.00 3.01
5563 6083 4.645535 TCCATTTCTCTGACAAGGACTTG 58.354 43.478 10.34 10.34 45.58 3.16
5564 6084 3.190118 CCATTTCTCTGACAAGGACTTGC 59.810 47.826 11.73 5.89 44.03 4.01
5565 6085 3.845781 TTTCTCTGACAAGGACTTGCT 57.154 42.857 11.73 0.09 44.03 3.91
5566 6086 4.955811 TTTCTCTGACAAGGACTTGCTA 57.044 40.909 11.73 1.03 44.03 3.49
5567 6087 5.489792 TTTCTCTGACAAGGACTTGCTAT 57.510 39.130 11.73 0.00 44.03 2.97
5568 6088 4.462508 TCTCTGACAAGGACTTGCTATG 57.537 45.455 11.73 1.31 44.03 2.23
5569 6089 3.834813 TCTCTGACAAGGACTTGCTATGT 59.165 43.478 11.73 0.00 44.03 2.29
5570 6090 3.930336 TCTGACAAGGACTTGCTATGTG 58.070 45.455 11.73 0.00 44.03 3.21
5571 6091 2.417933 CTGACAAGGACTTGCTATGTGC 59.582 50.000 11.73 0.00 44.03 4.57
5572 6092 2.038952 TGACAAGGACTTGCTATGTGCT 59.961 45.455 11.73 0.00 44.03 4.40
5573 6093 3.260632 TGACAAGGACTTGCTATGTGCTA 59.739 43.478 11.73 0.00 44.03 3.49
5574 6094 4.080919 TGACAAGGACTTGCTATGTGCTAT 60.081 41.667 11.73 0.00 44.03 2.97
5575 6095 4.848357 ACAAGGACTTGCTATGTGCTATT 58.152 39.130 11.73 0.00 44.03 1.73
5576 6096 5.989477 ACAAGGACTTGCTATGTGCTATTA 58.011 37.500 11.73 0.00 44.03 0.98
5577 6097 5.817816 ACAAGGACTTGCTATGTGCTATTAC 59.182 40.000 11.73 0.00 44.03 1.89
5578 6098 5.878406 AGGACTTGCTATGTGCTATTACT 57.122 39.130 0.00 0.00 43.37 2.24
5579 6099 6.978674 AGGACTTGCTATGTGCTATTACTA 57.021 37.500 0.00 0.00 43.37 1.82
5580 6100 6.750148 AGGACTTGCTATGTGCTATTACTAC 58.250 40.000 0.00 0.00 43.37 2.73
5581 6101 6.551601 AGGACTTGCTATGTGCTATTACTACT 59.448 38.462 0.00 0.00 43.37 2.57
5582 6102 7.070074 AGGACTTGCTATGTGCTATTACTACTT 59.930 37.037 0.00 0.00 43.37 2.24
5583 6103 7.382759 GGACTTGCTATGTGCTATTACTACTTC 59.617 40.741 0.00 0.00 43.37 3.01
5584 6104 7.782049 ACTTGCTATGTGCTATTACTACTTCA 58.218 34.615 0.00 0.00 43.37 3.02
5585 6105 8.258007 ACTTGCTATGTGCTATTACTACTTCAA 58.742 33.333 0.00 0.00 43.37 2.69
5586 6106 8.420374 TTGCTATGTGCTATTACTACTTCAAC 57.580 34.615 0.00 0.00 43.37 3.18
5587 6107 6.984474 TGCTATGTGCTATTACTACTTCAACC 59.016 38.462 0.00 0.00 43.37 3.77
5588 6108 7.147724 TGCTATGTGCTATTACTACTTCAACCT 60.148 37.037 0.00 0.00 43.37 3.50
5589 6109 7.711339 GCTATGTGCTATTACTACTTCAACCTT 59.289 37.037 0.00 0.00 38.95 3.50
5590 6110 9.601217 CTATGTGCTATTACTACTTCAACCTTT 57.399 33.333 0.00 0.00 0.00 3.11
5591 6111 8.863872 ATGTGCTATTACTACTTCAACCTTTT 57.136 30.769 0.00 0.00 0.00 2.27
5592 6112 9.953565 ATGTGCTATTACTACTTCAACCTTTTA 57.046 29.630 0.00 0.00 0.00 1.52
5593 6113 9.953565 TGTGCTATTACTACTTCAACCTTTTAT 57.046 29.630 0.00 0.00 0.00 1.40
5595 6115 9.953565 TGCTATTACTACTTCAACCTTTTATGT 57.046 29.630 0.00 0.00 0.00 2.29
5601 6121 8.095937 ACTACTTCAACCTTTTATGTACTTGC 57.904 34.615 0.00 0.00 0.00 4.01
5602 6122 7.937394 ACTACTTCAACCTTTTATGTACTTGCT 59.063 33.333 0.00 0.00 0.00 3.91
5603 6123 9.431887 CTACTTCAACCTTTTATGTACTTGCTA 57.568 33.333 0.00 0.00 0.00 3.49
5604 6124 8.095937 ACTTCAACCTTTTATGTACTTGCTAC 57.904 34.615 0.00 0.00 0.00 3.58
5605 6125 7.937394 ACTTCAACCTTTTATGTACTTGCTACT 59.063 33.333 0.00 0.00 0.00 2.57
5606 6126 7.667043 TCAACCTTTTATGTACTTGCTACTG 57.333 36.000 0.00 0.00 0.00 2.74
5607 6127 6.148811 TCAACCTTTTATGTACTTGCTACTGC 59.851 38.462 0.00 0.00 40.20 4.40
5619 6139 2.977914 TGCTACTGCAGACTGGATTTC 58.022 47.619 23.35 0.00 45.31 2.17
5620 6140 2.302733 TGCTACTGCAGACTGGATTTCA 59.697 45.455 23.35 1.99 45.31 2.69
5621 6141 2.935201 GCTACTGCAGACTGGATTTCAG 59.065 50.000 23.35 5.13 43.10 3.02
5622 6142 3.368843 GCTACTGCAGACTGGATTTCAGA 60.369 47.826 23.35 0.00 41.49 3.27
5623 6143 3.777106 ACTGCAGACTGGATTTCAGAA 57.223 42.857 23.35 0.00 46.18 3.02
5624 6144 4.298103 ACTGCAGACTGGATTTCAGAAT 57.702 40.909 23.35 0.00 46.18 2.40
5625 6145 4.008330 ACTGCAGACTGGATTTCAGAATG 58.992 43.478 23.35 0.00 46.18 2.67
5641 6161 6.041423 TCAGAATGATTACAGAGAACAGCA 57.959 37.500 0.00 0.00 42.56 4.41
5642 6162 6.466812 TCAGAATGATTACAGAGAACAGCAA 58.533 36.000 0.00 0.00 42.56 3.91
5643 6163 6.369890 TCAGAATGATTACAGAGAACAGCAAC 59.630 38.462 0.00 0.00 42.56 4.17
5644 6164 6.148315 CAGAATGATTACAGAGAACAGCAACA 59.852 38.462 0.00 0.00 39.69 3.33
5645 6165 6.883217 AGAATGATTACAGAGAACAGCAACAT 59.117 34.615 0.00 0.00 0.00 2.71
5646 6166 6.674694 ATGATTACAGAGAACAGCAACATC 57.325 37.500 0.00 0.00 0.00 3.06
5647 6167 5.550290 TGATTACAGAGAACAGCAACATCA 58.450 37.500 0.00 0.00 0.00 3.07
5648 6168 6.175471 TGATTACAGAGAACAGCAACATCAT 58.825 36.000 0.00 0.00 0.00 2.45
5649 6169 5.868043 TTACAGAGAACAGCAACATCATG 57.132 39.130 0.00 0.00 0.00 3.07
5650 6170 4.011966 ACAGAGAACAGCAACATCATGA 57.988 40.909 0.00 0.00 0.00 3.07
5651 6171 4.586884 ACAGAGAACAGCAACATCATGAT 58.413 39.130 1.18 1.18 0.00 2.45
5652 6172 4.395231 ACAGAGAACAGCAACATCATGATG 59.605 41.667 29.95 29.95 42.26 3.07
5653 6173 3.945921 AGAGAACAGCAACATCATGATGG 59.054 43.478 33.31 20.54 40.91 3.51
5654 6174 3.693085 GAGAACAGCAACATCATGATGGT 59.307 43.478 33.31 27.88 39.80 3.55
5655 6175 4.847198 AGAACAGCAACATCATGATGGTA 58.153 39.130 33.31 0.00 36.63 3.25
5656 6176 4.880120 AGAACAGCAACATCATGATGGTAG 59.120 41.667 33.31 23.52 36.63 3.18
5657 6177 4.492494 ACAGCAACATCATGATGGTAGA 57.508 40.909 33.31 0.00 40.91 2.59
5658 6178 4.847198 ACAGCAACATCATGATGGTAGAA 58.153 39.130 33.31 0.00 40.91 2.10
5659 6179 5.255687 ACAGCAACATCATGATGGTAGAAA 58.744 37.500 33.31 0.00 40.91 2.52
5660 6180 5.356190 ACAGCAACATCATGATGGTAGAAAG 59.644 40.000 33.31 19.22 40.91 2.62
5661 6181 5.587443 CAGCAACATCATGATGGTAGAAAGA 59.413 40.000 33.31 0.00 42.91 2.52
5662 6182 6.094464 CAGCAACATCATGATGGTAGAAAGAA 59.906 38.462 33.31 0.00 42.91 2.52
5663 6183 6.094603 AGCAACATCATGATGGTAGAAAGAAC 59.905 38.462 33.31 13.47 42.91 3.01
5664 6184 6.678900 GCAACATCATGATGGTAGAAAGAACC 60.679 42.308 33.31 8.95 42.91 3.62
5675 6195 7.156876 TGGTAGAAAGAACCAATAAATGCAG 57.843 36.000 0.00 0.00 43.99 4.41
5676 6196 6.719370 TGGTAGAAAGAACCAATAAATGCAGT 59.281 34.615 0.00 0.00 43.99 4.40
5677 6197 7.094377 TGGTAGAAAGAACCAATAAATGCAGTC 60.094 37.037 0.00 0.00 43.99 3.51
5678 6198 7.121315 GGTAGAAAGAACCAATAAATGCAGTCT 59.879 37.037 0.00 0.00 36.96 3.24
5679 6199 6.917533 AGAAAGAACCAATAAATGCAGTCTG 58.082 36.000 0.00 0.00 0.00 3.51
5680 6200 5.649782 AAGAACCAATAAATGCAGTCTGG 57.350 39.130 1.14 7.99 0.00 3.86
5681 6201 4.019174 AGAACCAATAAATGCAGTCTGGG 58.981 43.478 12.70 2.47 0.00 4.45
5682 6202 3.456380 ACCAATAAATGCAGTCTGGGT 57.544 42.857 12.70 3.03 0.00 4.51
5683 6203 3.778265 ACCAATAAATGCAGTCTGGGTT 58.222 40.909 12.70 0.00 0.00 4.11
5684 6204 4.159557 ACCAATAAATGCAGTCTGGGTTT 58.840 39.130 12.70 0.60 0.00 3.27
5685 6205 5.329399 ACCAATAAATGCAGTCTGGGTTTA 58.671 37.500 12.70 2.65 0.00 2.01
5686 6206 5.418840 ACCAATAAATGCAGTCTGGGTTTAG 59.581 40.000 12.70 0.00 0.00 1.85
5687 6207 5.163519 CCAATAAATGCAGTCTGGGTTTAGG 60.164 44.000 1.14 0.00 0.00 2.69
5688 6208 3.806949 AAATGCAGTCTGGGTTTAGGA 57.193 42.857 1.14 0.00 0.00 2.94
5689 6209 3.806949 AATGCAGTCTGGGTTTAGGAA 57.193 42.857 1.14 0.00 0.00 3.36
5690 6210 3.806949 ATGCAGTCTGGGTTTAGGAAA 57.193 42.857 1.14 0.00 0.00 3.13
5691 6211 2.858745 TGCAGTCTGGGTTTAGGAAAC 58.141 47.619 1.14 0.00 40.65 2.78
5707 6227 9.103861 GTTTAGGAAACCAAAATTGTTGAATGA 57.896 29.630 0.00 0.00 35.35 2.57
5708 6228 9.672673 TTTAGGAAACCAAAATTGTTGAATGAA 57.327 25.926 0.00 0.00 0.00 2.57
5709 6229 9.672673 TTAGGAAACCAAAATTGTTGAATGAAA 57.327 25.926 0.00 0.00 0.00 2.69
5710 6230 8.212317 AGGAAACCAAAATTGTTGAATGAAAG 57.788 30.769 0.00 0.00 0.00 2.62
5711 6231 7.282901 AGGAAACCAAAATTGTTGAATGAAAGG 59.717 33.333 0.00 0.00 0.00 3.11
5712 6232 6.375945 AACCAAAATTGTTGAATGAAAGGC 57.624 33.333 0.00 0.00 0.00 4.35
5713 6233 5.683681 ACCAAAATTGTTGAATGAAAGGCT 58.316 33.333 0.00 0.00 0.00 4.58
5714 6234 6.121590 ACCAAAATTGTTGAATGAAAGGCTT 58.878 32.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.905337 CTTCCTCCCCTTCGGTGAGT 60.905 60.000 0.00 0.00 0.00 3.41
45 46 0.995803 GGAAGCTTCTTCCTCCCCTT 59.004 55.000 25.05 0.00 35.73 3.95
180 181 1.461075 CAGCCATCCCTCTAGCCCT 60.461 63.158 0.00 0.00 0.00 5.19
216 218 1.538876 CTGGAACCTCCTCCCACCA 60.539 63.158 0.00 0.00 37.46 4.17
241 243 3.931247 CCAACCACCACCGTCCGA 61.931 66.667 0.00 0.00 0.00 4.55
398 400 6.312918 GCCAAGTGTAAATCGACTAGAAATGA 59.687 38.462 0.00 0.00 0.00 2.57
405 407 3.259876 AGTGGCCAAGTGTAAATCGACTA 59.740 43.478 7.24 0.00 0.00 2.59
532 534 3.427573 TCGTCAGGGTGAAGAGTATTCA 58.572 45.455 0.00 0.00 30.20 2.57
533 535 4.035278 CTCGTCAGGGTGAAGAGTATTC 57.965 50.000 10.60 0.00 44.35 1.75
540 543 0.596577 TCGTTCTCGTCAGGGTGAAG 59.403 55.000 0.00 0.00 38.33 3.02
543 546 0.387367 CTGTCGTTCTCGTCAGGGTG 60.387 60.000 6.89 0.00 44.66 4.61
554 557 0.804989 CCTGCCCATTTCTGTCGTTC 59.195 55.000 0.00 0.00 0.00 3.95
601 604 7.059817 CGTACAAAAATATGATGCTTCTCTCG 58.940 38.462 0.88 0.00 0.00 4.04
606 609 6.131544 ACCCGTACAAAAATATGATGCTTC 57.868 37.500 0.00 0.00 0.00 3.86
634 637 2.100584 TCGGAAACAAGTTGCAATTGCT 59.899 40.909 29.37 8.45 42.66 3.91
636 639 5.462034 TTTTCGGAAACAAGTTGCAATTG 57.538 34.783 0.59 10.83 0.00 2.32
669 1045 2.664851 TCGGGTGAACAAGCTGCG 60.665 61.111 0.00 0.00 32.34 5.18
671 1047 2.093306 TATGTCGGGTGAACAAGCTG 57.907 50.000 0.00 0.00 0.00 4.24
673 1049 5.295787 TGAATTATATGTCGGGTGAACAAGC 59.704 40.000 0.00 0.00 0.00 4.01
702 1078 7.661040 CCCCCTAAATGAAATCATATGAACAC 58.339 38.462 9.99 4.66 35.10 3.32
726 1102 0.112412 TCCAAAAGGAAGAGGTGCCC 59.888 55.000 0.00 0.00 0.00 5.36
727 1103 1.248486 GTCCAAAAGGAAGAGGTGCC 58.752 55.000 0.00 0.00 0.00 5.01
728 1104 1.882623 CTGTCCAAAAGGAAGAGGTGC 59.117 52.381 0.00 0.00 0.00 5.01
734 1110 1.202927 TCCCTGCTGTCCAAAAGGAAG 60.203 52.381 0.00 0.00 30.92 3.46
768 1144 0.107081 AAACCGACCCACATTCGTCA 59.893 50.000 0.00 0.00 34.56 4.35
794 1170 2.160171 CCCCTCCCCACACCAGAAA 61.160 63.158 0.00 0.00 0.00 2.52
795 1171 2.531685 CCCCTCCCCACACCAGAA 60.532 66.667 0.00 0.00 0.00 3.02
796 1172 3.864983 GACCCCTCCCCACACCAGA 62.865 68.421 0.00 0.00 0.00 3.86
797 1173 3.330720 GACCCCTCCCCACACCAG 61.331 72.222 0.00 0.00 0.00 4.00
798 1174 2.051050 TAAGACCCCTCCCCACACCA 62.051 60.000 0.00 0.00 0.00 4.17
799 1175 0.623617 ATAAGACCCCTCCCCACACC 60.624 60.000 0.00 0.00 0.00 4.16
805 1181 3.960755 CCATGAAAAATAAGACCCCTCCC 59.039 47.826 0.00 0.00 0.00 4.30
806 1182 4.867086 TCCATGAAAAATAAGACCCCTCC 58.133 43.478 0.00 0.00 0.00 4.30
807 1183 6.129179 TCATCCATGAAAAATAAGACCCCTC 58.871 40.000 0.00 0.00 33.08 4.30
808 1184 6.091076 TCATCCATGAAAAATAAGACCCCT 57.909 37.500 0.00 0.00 33.08 4.79
809 1185 5.893824 ACTCATCCATGAAAAATAAGACCCC 59.106 40.000 0.00 0.00 36.18 4.95
824 1217 1.918262 TCAAGCCCAGAACTCATCCAT 59.082 47.619 0.00 0.00 0.00 3.41
832 1225 0.250338 ACCTTCGTCAAGCCCAGAAC 60.250 55.000 0.00 0.00 0.00 3.01
846 1239 1.342174 TGTCACGTTAGACCCACCTTC 59.658 52.381 3.81 0.00 37.73 3.46
855 1248 0.888619 CTGGGCTCTGTCACGTTAGA 59.111 55.000 0.00 0.00 0.00 2.10
867 1260 2.713531 TTTGAACTGGGCCTGGGCTC 62.714 60.000 20.47 9.36 43.05 4.70
881 1274 0.529773 AGCACTGAGTCGCGTTTGAA 60.530 50.000 5.77 0.00 0.00 2.69
883 1276 1.202568 CAGCACTGAGTCGCGTTTG 59.797 57.895 5.77 0.00 0.00 2.93
886 1279 1.081376 GTACAGCACTGAGTCGCGT 60.081 57.895 5.77 0.00 0.00 6.01
888 1281 0.167470 TACGTACAGCACTGAGTCGC 59.833 55.000 4.31 0.00 0.00 5.19
899 1292 0.979811 CCGTGAGCGTTTACGTACAG 59.020 55.000 14.90 0.00 42.22 2.74
900 1293 0.590682 TCCGTGAGCGTTTACGTACA 59.409 50.000 14.90 2.37 42.22 2.90
915 1308 1.228154 AGCTTTTTCCGCCTTCCGT 60.228 52.632 0.00 0.00 34.38 4.69
932 1325 0.689412 GGAGAGGGAACAGGGGAGAG 60.689 65.000 0.00 0.00 0.00 3.20
950 1343 2.437180 GGGTTTAGGGCGAACCGG 60.437 66.667 0.00 0.00 45.97 5.28
977 1372 3.213402 GAGAGGTCGCGGAGGAGG 61.213 72.222 6.13 0.00 0.00 4.30
1178 1603 1.484240 GAGACATGGGGAGTTGGAGAG 59.516 57.143 0.00 0.00 0.00 3.20
1180 1605 0.543749 GGAGACATGGGGAGTTGGAG 59.456 60.000 0.00 0.00 0.00 3.86
1183 1608 0.391661 CACGGAGACATGGGGAGTTG 60.392 60.000 0.00 0.00 0.00 3.16
1184 1609 1.553690 CCACGGAGACATGGGGAGTT 61.554 60.000 0.00 0.00 31.83 3.01
1185 1610 1.990060 CCACGGAGACATGGGGAGT 60.990 63.158 0.00 0.00 31.83 3.85
1186 1611 2.903357 CCACGGAGACATGGGGAG 59.097 66.667 0.00 0.00 31.83 4.30
1188 1613 3.391665 GAGCCACGGAGACATGGGG 62.392 68.421 0.00 0.00 36.41 4.96
1189 1614 2.187946 GAGCCACGGAGACATGGG 59.812 66.667 0.00 0.00 36.41 4.00
1192 1617 1.729470 CTAGCGAGCCACGGAGACAT 61.729 60.000 3.29 0.00 42.83 3.06
1194 1619 2.409651 CTAGCGAGCCACGGAGAC 59.590 66.667 3.29 0.00 42.83 3.36
1208 1633 1.867919 CGGTAGATGGAGGCGGCTAG 61.868 65.000 13.24 0.00 0.00 3.42
1209 1634 1.901948 CGGTAGATGGAGGCGGCTA 60.902 63.158 13.24 0.00 0.00 3.93
1225 1650 1.194547 CAGAAAACACATGGACGACGG 59.805 52.381 0.00 0.00 0.00 4.79
1226 1651 1.398451 GCAGAAAACACATGGACGACG 60.398 52.381 0.00 0.00 0.00 5.12
1228 1653 2.254546 AGCAGAAAACACATGGACGA 57.745 45.000 0.00 0.00 0.00 4.20
1230 1655 2.887152 AGGAAGCAGAAAACACATGGAC 59.113 45.455 0.00 0.00 0.00 4.02
1238 1663 2.349912 GCTCGAACAGGAAGCAGAAAAC 60.350 50.000 0.00 0.00 0.00 2.43
1244 1669 0.320771 GGAAGCTCGAACAGGAAGCA 60.321 55.000 0.00 0.00 0.00 3.91
1265 1690 0.593518 CGATCAGTCGCTGCTTCGAT 60.594 55.000 17.91 0.00 41.49 3.59
1280 1705 4.372656 ACTGCTAACTAATTGCCTCGATC 58.627 43.478 0.00 0.00 0.00 3.69
1283 1708 3.802685 GGTACTGCTAACTAATTGCCTCG 59.197 47.826 0.00 0.00 0.00 4.63
1290 1715 4.220724 TCGATGGGGTACTGCTAACTAAT 58.779 43.478 0.00 0.00 0.00 1.73
1296 1721 4.038763 CACTAATTCGATGGGGTACTGCTA 59.961 45.833 0.00 0.00 0.00 3.49
1304 1729 2.620251 TCTGCACTAATTCGATGGGG 57.380 50.000 0.00 0.00 0.00 4.96
1329 1754 1.473677 CGGAGAGCCATGAAATTTGCA 59.526 47.619 0.00 0.00 0.00 4.08
1330 1755 1.474077 ACGGAGAGCCATGAAATTTGC 59.526 47.619 0.00 0.00 0.00 3.68
1368 1793 4.081309 CAGCAACCAAGAATTTGATGGGAT 60.081 41.667 9.17 0.00 35.85 3.85
1369 1794 3.258872 CAGCAACCAAGAATTTGATGGGA 59.741 43.478 9.17 0.00 35.85 4.37
1370 1795 3.592059 CAGCAACCAAGAATTTGATGGG 58.408 45.455 9.17 0.00 35.85 4.00
1375 1800 2.364970 TGACCCAGCAACCAAGAATTTG 59.635 45.455 0.00 0.00 0.00 2.32
1376 1801 2.676748 TGACCCAGCAACCAAGAATTT 58.323 42.857 0.00 0.00 0.00 1.82
1377 1802 2.380064 TGACCCAGCAACCAAGAATT 57.620 45.000 0.00 0.00 0.00 2.17
1405 1837 3.058914 CACCGAAACATGTGAGTTCTTCC 60.059 47.826 0.00 0.00 34.37 3.46
1419 1851 5.516339 CCAATATGCAAAATCTCACCGAAAC 59.484 40.000 0.00 0.00 0.00 2.78
1436 1868 2.702751 TACCGCGGCGTCCCAATATG 62.703 60.000 28.58 4.79 0.00 1.78
1437 1869 2.430382 CTACCGCGGCGTCCCAATAT 62.430 60.000 28.58 3.48 0.00 1.28
1446 1878 3.908081 ATACACCCTACCGCGGCG 61.908 66.667 28.58 16.78 0.00 6.46
1458 1890 3.551046 CGGCAGGATACAGAGACATACAC 60.551 52.174 0.00 0.00 41.41 2.90
1488 1920 0.679002 CCTATGCTTGCAGGCTGTGT 60.679 55.000 22.31 7.93 0.00 3.72
1489 1921 1.381928 CCCTATGCTTGCAGGCTGTG 61.382 60.000 22.31 10.85 0.00 3.66
1490 1922 1.077212 CCCTATGCTTGCAGGCTGT 60.077 57.895 22.31 12.82 0.00 4.40
1491 1923 0.178998 ATCCCTATGCTTGCAGGCTG 60.179 55.000 22.31 10.94 0.00 4.85
1492 1924 0.178998 CATCCCTATGCTTGCAGGCT 60.179 55.000 22.31 9.91 0.00 4.58
1493 1925 1.177256 CCATCCCTATGCTTGCAGGC 61.177 60.000 14.88 14.88 0.00 4.85
1514 1946 4.398988 AGTTTCTGCAGAATGTGTTGACAA 59.601 37.500 28.89 7.98 39.31 3.18
1517 1949 6.262944 ACATTAGTTTCTGCAGAATGTGTTGA 59.737 34.615 28.89 10.26 38.85 3.18
1559 1995 3.670625 ACGGTAAACTATCAGCAAAGCA 58.329 40.909 0.00 0.00 0.00 3.91
1575 2014 3.125316 CACCAGAGAAACGAAAACGGTA 58.875 45.455 0.00 0.00 0.00 4.02
1576 2015 1.937899 CACCAGAGAAACGAAAACGGT 59.062 47.619 0.00 0.00 0.00 4.83
1577 2016 1.937899 ACACCAGAGAAACGAAAACGG 59.062 47.619 0.00 0.00 0.00 4.44
1578 2017 4.046462 TCTACACCAGAGAAACGAAAACG 58.954 43.478 0.00 0.00 0.00 3.60
1580 2019 7.663827 TCTTATCTACACCAGAGAAACGAAAA 58.336 34.615 0.00 0.00 34.16 2.29
1597 2036 3.980698 CCCCTGGAAACCCATCTTATCTA 59.019 47.826 0.00 0.00 32.36 1.98
1704 2143 3.002791 GCAGCACTGTAGTTTATGCAGA 58.997 45.455 0.00 0.00 43.81 4.26
1754 2193 2.664851 CAGTTGGCGGACGCAGAA 60.665 61.111 18.95 7.60 44.11 3.02
1965 2407 7.421599 CAACCAAATTTAATGACCCCAAAAAC 58.578 34.615 0.00 0.00 0.00 2.43
1971 2413 4.564613 CCACCAACCAAATTTAATGACCCC 60.565 45.833 0.00 0.00 0.00 4.95
1972 2414 4.041075 ACCACCAACCAAATTTAATGACCC 59.959 41.667 0.00 0.00 0.00 4.46
1973 2415 5.222079 ACCACCAACCAAATTTAATGACC 57.778 39.130 0.00 0.00 0.00 4.02
1984 2426 4.269183 CAGCAGATATAACCACCAACCAA 58.731 43.478 0.00 0.00 0.00 3.67
2004 2450 4.471904 TGGTAACATAGCTGAACTCCAG 57.528 45.455 0.00 0.00 46.17 3.86
2055 2501 3.573967 TCAGCCGACATATCAATCAGCTA 59.426 43.478 0.00 0.00 0.00 3.32
2215 2671 3.243907 CGAGGGTTCTTCAAGAGACAACT 60.244 47.826 0.00 0.00 33.02 3.16
2216 2672 3.060602 CGAGGGTTCTTCAAGAGACAAC 58.939 50.000 0.00 0.00 33.02 3.32
2218 2674 2.594131 TCGAGGGTTCTTCAAGAGACA 58.406 47.619 0.00 0.00 33.02 3.41
2219 2675 3.878160 ATCGAGGGTTCTTCAAGAGAC 57.122 47.619 0.00 0.00 33.02 3.36
2221 2677 5.982516 CAGAATATCGAGGGTTCTTCAAGAG 59.017 44.000 6.92 0.00 30.19 2.85
2222 2678 5.656859 TCAGAATATCGAGGGTTCTTCAAGA 59.343 40.000 6.92 0.00 30.19 3.02
2223 2679 5.907207 TCAGAATATCGAGGGTTCTTCAAG 58.093 41.667 6.92 0.00 30.19 3.02
2224 2680 5.932619 TCAGAATATCGAGGGTTCTTCAA 57.067 39.130 6.92 0.00 30.19 2.69
2266 2722 2.773487 ACAATTACCAACGCTGCAGTA 58.227 42.857 16.64 0.00 0.00 2.74
2296 2753 1.458639 AAACCTGCAAGCACAGCTCC 61.459 55.000 0.00 0.00 38.25 4.70
2371 2828 0.835941 ATCTGCTCTCACCACCCATC 59.164 55.000 0.00 0.00 0.00 3.51
2424 2881 1.487142 TCAACTCCTTGACGGGACAAA 59.513 47.619 0.00 0.00 31.00 2.83
2461 2918 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2462 2919 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2463 2920 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2464 2921 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2465 2922 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2466 2923 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2467 2924 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2468 2925 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2469 2926 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2470 2927 7.996644 ACTAAAGTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 35.87 4.37
2471 2928 8.166422 ACTAAAGTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 35.87 4.12
2478 2935 9.880157 AAAGTTGTACTAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2479 2936 8.665685 CAAAGTTGTACTAAAGTTGAGACACTT 58.334 33.333 0.00 0.00 38.74 3.16
2480 2937 7.822822 ACAAAGTTGTACTAAAGTTGAGACACT 59.177 33.333 0.00 0.00 40.16 3.55
2481 2938 7.971455 ACAAAGTTGTACTAAAGTTGAGACAC 58.029 34.615 0.00 0.00 40.16 3.67
2506 2963 9.565090 TGTCTCAACTTTGTACTAACTCTAGTA 57.435 33.333 0.00 0.00 39.23 1.82
2507 2964 8.351461 GTGTCTCAACTTTGTACTAACTCTAGT 58.649 37.037 0.00 0.00 41.43 2.57
2508 2965 8.569641 AGTGTCTCAACTTTGTACTAACTCTAG 58.430 37.037 0.00 0.00 0.00 2.43
2509 2966 8.461249 AGTGTCTCAACTTTGTACTAACTCTA 57.539 34.615 0.00 0.00 0.00 2.43
2510 2967 7.349412 AGTGTCTCAACTTTGTACTAACTCT 57.651 36.000 0.00 0.00 0.00 3.24
2511 2968 9.694137 ATAAGTGTCTCAACTTTGTACTAACTC 57.306 33.333 0.00 0.00 40.77 3.01
2516 2973 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2517 2974 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2518 2975 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2519 2976 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2520 2977 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2521 2978 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2522 2979 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2523 2980 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2524 2981 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2525 2982 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2526 2983 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2527 2984 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2528 2985 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2529 2986 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2530 2987 2.640826 TCCTCCGTCCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
2531 2988 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
2532 2989 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
2533 2990 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
2534 2991 5.502089 TTACTTCCTCCGTCCCAAAATAA 57.498 39.130 0.00 0.00 0.00 1.40
2535 2992 5.502089 TTTACTTCCTCCGTCCCAAAATA 57.498 39.130 0.00 0.00 0.00 1.40
2536 2993 4.376225 TTTACTTCCTCCGTCCCAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
2537 2994 3.860968 TTTACTTCCTCCGTCCCAAAA 57.139 42.857 0.00 0.00 0.00 2.44
2538 2995 3.860968 TTTTACTTCCTCCGTCCCAAA 57.139 42.857 0.00 0.00 0.00 3.28
2539 2996 3.073356 ACATTTTACTTCCTCCGTCCCAA 59.927 43.478 0.00 0.00 0.00 4.12
2540 2997 2.640826 ACATTTTACTTCCTCCGTCCCA 59.359 45.455 0.00 0.00 0.00 4.37
2541 2998 3.345508 ACATTTTACTTCCTCCGTCCC 57.654 47.619 0.00 0.00 0.00 4.46
2542 2999 3.119955 GCAACATTTTACTTCCTCCGTCC 60.120 47.826 0.00 0.00 0.00 4.79
2543 3000 3.119955 GGCAACATTTTACTTCCTCCGTC 60.120 47.826 0.00 0.00 0.00 4.79
2544 3001 2.817844 GGCAACATTTTACTTCCTCCGT 59.182 45.455 0.00 0.00 0.00 4.69
2545 3002 3.081804 AGGCAACATTTTACTTCCTCCG 58.918 45.455 0.00 0.00 41.41 4.63
2546 3003 5.468540 AAAGGCAACATTTTACTTCCTCC 57.531 39.130 0.00 0.00 41.41 4.30
2547 3004 8.736244 TGTATAAAGGCAACATTTTACTTCCTC 58.264 33.333 0.00 0.00 34.27 3.71
2548 3005 8.644374 TGTATAAAGGCAACATTTTACTTCCT 57.356 30.769 0.00 0.00 34.27 3.36
2549 3006 9.869757 ATTGTATAAAGGCAACATTTTACTTCC 57.130 29.630 0.00 0.00 34.27 3.46
2785 3247 7.014230 ACAAATAAACACCATTGCAGTAAGAGT 59.986 33.333 0.00 0.00 0.00 3.24
2978 3440 5.011227 TGGGTTCTTTAAACTAATGTTGGCC 59.989 40.000 0.00 0.00 36.39 5.36
2993 3455 4.082125 GTCCAATCATGACTGGGTTCTTT 58.918 43.478 22.40 0.00 33.19 2.52
3005 3467 4.747540 TTGTTCGTCAAGTCCAATCATG 57.252 40.909 0.00 0.00 0.00 3.07
3048 3510 1.153349 GCTTCTTCCCTAGGGCACG 60.153 63.158 24.42 13.25 34.68 5.34
3098 3560 9.494271 ACTATATTATTGTGCTTGTCAGGTATG 57.506 33.333 0.00 0.00 0.00 2.39
3134 3596 5.477984 TGCAGGAAGCTTAAAATCATCAACT 59.522 36.000 0.00 0.00 45.94 3.16
3200 3662 3.552684 GCAAGCATGTAAAGTTCCAAGCA 60.553 43.478 0.00 0.00 0.00 3.91
3240 3702 8.216453 GCATAAAACAGAAAACATTGCAGTAAG 58.784 33.333 0.00 0.00 0.00 2.34
3460 3937 3.761218 TGAAAACAACAACCTGCAGAAGA 59.239 39.130 17.39 0.00 0.00 2.87
3637 4114 6.566079 TCAGAACTGAATCCCAAGTATGAT 57.434 37.500 1.79 0.00 36.53 2.45
3685 4162 1.156645 GGCCTCTAGCAGCAACATCG 61.157 60.000 0.00 0.00 46.50 3.84
3697 4174 0.044092 TGGGAATGTCCAGGCCTCTA 59.956 55.000 0.00 0.00 38.64 2.43
3704 4181 3.758554 CACCTAACTTTGGGAATGTCCAG 59.241 47.826 0.00 0.00 38.64 3.86
3715 4192 7.495606 TCATACTGTATGATGCACCTAACTTTG 59.504 37.037 23.01 0.00 40.09 2.77
3748 4225 0.320771 CATATTCGGAAGCCTCCCCG 60.321 60.000 0.00 0.00 46.57 5.73
3760 4237 6.018994 GCTTAAGGTACCTGTGAACATATTCG 60.019 42.308 17.14 0.00 37.69 3.34
3886 4363 8.594881 TTGACAGTAATGAAGAGAAAGAACTC 57.405 34.615 0.00 0.00 37.19 3.01
3943 4420 1.604604 ACTACAAAACGCCACAGCAT 58.395 45.000 0.00 0.00 39.83 3.79
3944 4421 1.332375 GAACTACAAAACGCCACAGCA 59.668 47.619 0.00 0.00 39.83 4.41
4043 4522 8.565896 ACTGATGTTATTGAAACTCAAGCATA 57.434 30.769 0.00 0.00 40.05 3.14
4147 4626 4.396790 AGCTCTAGGTCTTTCAAGTAGTCG 59.603 45.833 0.00 0.00 0.00 4.18
4174 4653 4.261656 GGGTATTCAGTCAGAGATACACCG 60.262 50.000 0.00 0.00 0.00 4.94
4343 4826 4.314121 CAAGAGTCAACTGAAGGAAGGAG 58.686 47.826 0.00 0.00 0.00 3.69
4345 4828 2.810852 GCAAGAGTCAACTGAAGGAAGG 59.189 50.000 0.00 0.00 0.00 3.46
4354 4837 5.420421 TCTTCTAGCTATGCAAGAGTCAACT 59.580 40.000 0.00 0.00 0.00 3.16
4357 4840 5.185828 TGTTCTTCTAGCTATGCAAGAGTCA 59.814 40.000 0.00 4.17 0.00 3.41
4422 4913 6.039047 ACATGATAGCACATTTGTTGAGATCC 59.961 38.462 0.00 0.00 0.00 3.36
4446 4937 3.055385 TGTTGTGGCCTGGATAAGAGTAC 60.055 47.826 3.32 0.00 0.00 2.73
4510 5005 4.143333 CCTCGGTGGGCGGTGTAG 62.143 72.222 0.00 0.00 0.00 2.74
4528 5023 4.704057 ACCATGAAAATCTTCTTCAGCTCC 59.296 41.667 0.00 0.00 36.30 4.70
4727 5222 6.038382 GTCTCCTGTGTGACGATCTTCTATTA 59.962 42.308 0.48 0.00 0.00 0.98
4844 5341 5.127491 AGGAAACGTAACAAAATCCTGTGA 58.873 37.500 0.00 0.00 36.01 3.58
4934 5441 0.317854 GCAGTTGCTTCCAAACGGAC 60.318 55.000 0.00 0.00 38.21 4.79
4950 5457 0.798389 TCGTGATTTCGAGCGAGCAG 60.798 55.000 0.00 0.00 34.85 4.24
5160 5668 1.537202 GGTTCAGGCAGTCATGTTGTC 59.463 52.381 0.00 0.00 0.00 3.18
5168 5676 0.036388 TGGAATCGGTTCAGGCAGTC 60.036 55.000 11.19 0.00 36.01 3.51
5185 5694 2.880890 GCCCTAGAACAGCATTGTATGG 59.119 50.000 0.00 0.00 36.23 2.74
5186 5695 3.812053 GAGCCCTAGAACAGCATTGTATG 59.188 47.826 0.00 0.00 36.23 2.39
5260 5775 5.795972 TCCTTTGTTGAACATACCGTGATA 58.204 37.500 0.00 0.00 0.00 2.15
5319 5834 3.575256 TCTTGTTGCAGCTTTCATGGATT 59.425 39.130 1.17 0.00 0.00 3.01
5341 5856 7.378181 ACAAACTGACAAGAAGATTGTTGTTT 58.622 30.769 9.18 14.31 43.60 2.83
5352 5872 9.168451 TGATGTTTACTTACAAACTGACAAGAA 57.832 29.630 0.00 0.00 38.85 2.52
5401 5921 4.287067 AGAGGGAGCACATTACTTCTTTGA 59.713 41.667 0.00 0.00 0.00 2.69
5406 5926 3.526534 GACAGAGGGAGCACATTACTTC 58.473 50.000 0.00 0.00 0.00 3.01
5419 5939 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
5420 5940 3.522553 GACAAGTATTTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
5421 5941 3.119602 TCGACAAGTATTTCCGGACAGAG 60.120 47.826 1.83 0.00 0.00 3.35
5422 5942 2.821378 TCGACAAGTATTTCCGGACAGA 59.179 45.455 1.83 0.00 0.00 3.41
5423 5943 3.226346 TCGACAAGTATTTCCGGACAG 57.774 47.619 1.83 0.00 0.00 3.51
5424 5944 3.256383 TCTTCGACAAGTATTTCCGGACA 59.744 43.478 1.83 0.00 0.00 4.02
5425 5945 3.611549 GTCTTCGACAAGTATTTCCGGAC 59.388 47.826 1.83 0.00 32.09 4.79
5426 5946 3.367703 GGTCTTCGACAAGTATTTCCGGA 60.368 47.826 0.00 0.00 33.68 5.14
5427 5947 2.928116 GGTCTTCGACAAGTATTTCCGG 59.072 50.000 0.00 0.00 33.68 5.14
5428 5948 3.846360 AGGTCTTCGACAAGTATTTCCG 58.154 45.455 0.00 0.00 33.68 4.30
5429 5949 7.662604 TTTTAGGTCTTCGACAAGTATTTCC 57.337 36.000 0.00 0.00 33.68 3.13
5432 5952 9.886132 ACATATTTTAGGTCTTCGACAAGTATT 57.114 29.630 0.00 0.00 33.68 1.89
5433 5953 9.530633 GACATATTTTAGGTCTTCGACAAGTAT 57.469 33.333 0.00 0.00 36.61 2.12
5434 5954 8.746530 AGACATATTTTAGGTCTTCGACAAGTA 58.253 33.333 0.00 0.00 46.49 2.24
5435 5955 7.612677 AGACATATTTTAGGTCTTCGACAAGT 58.387 34.615 0.00 0.00 46.49 3.16
5436 5956 9.239002 CTAGACATATTTTAGGTCTTCGACAAG 57.761 37.037 7.10 0.00 46.49 3.16
5437 5957 8.963725 TCTAGACATATTTTAGGTCTTCGACAA 58.036 33.333 7.10 0.00 46.49 3.18
5438 5958 8.515695 TCTAGACATATTTTAGGTCTTCGACA 57.484 34.615 7.10 0.00 46.49 4.35
5453 5973 8.690884 CGGAGAAATGGATGTATCTAGACATAT 58.309 37.037 0.00 0.00 40.18 1.78
5454 5974 7.888546 TCGGAGAAATGGATGTATCTAGACATA 59.111 37.037 0.00 0.00 40.18 2.29
5455 5975 6.721668 TCGGAGAAATGGATGTATCTAGACAT 59.278 38.462 0.00 0.00 42.82 3.06
5456 5976 6.016192 GTCGGAGAAATGGATGTATCTAGACA 60.016 42.308 0.00 0.00 39.69 3.41
5457 5977 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
5458 5978 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
5459 5979 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
5460 5980 6.323996 ACTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
5461 5981 5.129485 ACTTGTCGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 39.69 1.98
5462 5982 5.360591 ACTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
5463 5983 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
5464 5984 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
5465 5985 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
5466 5986 4.759782 AGTACTTGTCGGAGAAATGGATG 58.240 43.478 0.00 0.00 39.69 3.51
5467 5987 5.178797 CAAGTACTTGTCGGAGAAATGGAT 58.821 41.667 24.70 0.00 39.69 3.41
5468 5988 4.566004 CAAGTACTTGTCGGAGAAATGGA 58.434 43.478 24.70 0.00 39.69 3.41
5469 5989 3.125316 GCAAGTACTTGTCGGAGAAATGG 59.875 47.826 30.90 6.88 42.31 3.16
5470 5990 3.997021 AGCAAGTACTTGTCGGAGAAATG 59.003 43.478 30.90 7.80 42.31 2.32
5471 5991 4.273148 AGCAAGTACTTGTCGGAGAAAT 57.727 40.909 30.90 8.19 42.31 2.17
5472 5992 3.746045 AGCAAGTACTTGTCGGAGAAA 57.254 42.857 30.90 0.00 42.31 2.52
5473 5993 4.219944 ACATAGCAAGTACTTGTCGGAGAA 59.780 41.667 30.90 13.06 42.31 2.87
5474 5994 3.762288 ACATAGCAAGTACTTGTCGGAGA 59.238 43.478 30.90 14.10 42.31 3.71
5475 5995 3.859961 CACATAGCAAGTACTTGTCGGAG 59.140 47.826 30.90 20.71 42.31 4.63
5476 5996 3.845178 CACATAGCAAGTACTTGTCGGA 58.155 45.455 30.90 18.42 42.31 4.55
5477 5997 2.348666 GCACATAGCAAGTACTTGTCGG 59.651 50.000 30.90 21.33 44.79 4.79
5478 5998 3.641439 GCACATAGCAAGTACTTGTCG 57.359 47.619 30.90 20.40 44.79 4.35
5490 6010 2.113860 TCTTGGACAAGGCACATAGC 57.886 50.000 11.76 0.00 44.65 2.97
5491 6011 4.990257 CATTTCTTGGACAAGGCACATAG 58.010 43.478 11.76 0.00 38.88 2.23
5493 6013 3.947910 CATTTCTTGGACAAGGCACAT 57.052 42.857 11.76 0.00 38.88 3.21
5530 6050 6.796785 TCAGAGAAATGGATGTATCTGACA 57.203 37.500 0.76 0.00 43.97 3.58
5532 6052 6.796785 TGTCAGAGAAATGGATGTATCTGA 57.203 37.500 0.76 0.76 40.49 3.27
5533 6053 6.482641 CCTTGTCAGAGAAATGGATGTATCTG 59.517 42.308 0.00 0.00 36.38 2.90
5534 6054 6.385176 TCCTTGTCAGAGAAATGGATGTATCT 59.615 38.462 0.00 0.00 0.00 1.98
5535 6055 6.481644 GTCCTTGTCAGAGAAATGGATGTATC 59.518 42.308 0.00 0.00 28.09 2.24
5536 6056 6.157645 AGTCCTTGTCAGAGAAATGGATGTAT 59.842 38.462 0.00 0.00 28.09 2.29
5537 6057 5.485353 AGTCCTTGTCAGAGAAATGGATGTA 59.515 40.000 0.00 0.00 28.09 2.29
5538 6058 4.288105 AGTCCTTGTCAGAGAAATGGATGT 59.712 41.667 0.00 0.00 28.09 3.06
5539 6059 4.841422 AGTCCTTGTCAGAGAAATGGATG 58.159 43.478 0.00 0.00 28.09 3.51
5540 6060 5.251764 CAAGTCCTTGTCAGAGAAATGGAT 58.748 41.667 0.00 0.00 35.92 3.41
5541 6061 4.645535 CAAGTCCTTGTCAGAGAAATGGA 58.354 43.478 0.00 0.00 35.92 3.41
5542 6062 3.190118 GCAAGTCCTTGTCAGAGAAATGG 59.810 47.826 8.69 0.00 42.31 3.16
5543 6063 4.070716 AGCAAGTCCTTGTCAGAGAAATG 58.929 43.478 8.69 0.00 42.31 2.32
5544 6064 4.363991 AGCAAGTCCTTGTCAGAGAAAT 57.636 40.909 8.69 0.00 42.31 2.17
5545 6065 3.845781 AGCAAGTCCTTGTCAGAGAAA 57.154 42.857 8.69 0.00 42.31 2.52
5546 6066 4.284490 ACATAGCAAGTCCTTGTCAGAGAA 59.716 41.667 8.69 0.00 42.31 2.87
5547 6067 3.834813 ACATAGCAAGTCCTTGTCAGAGA 59.165 43.478 8.69 0.00 42.31 3.10
5548 6068 3.931468 CACATAGCAAGTCCTTGTCAGAG 59.069 47.826 8.69 0.00 42.31 3.35
5549 6069 3.866066 GCACATAGCAAGTCCTTGTCAGA 60.866 47.826 8.69 0.00 44.79 3.27
5550 6070 2.417933 GCACATAGCAAGTCCTTGTCAG 59.582 50.000 8.69 0.58 44.79 3.51
5551 6071 2.426522 GCACATAGCAAGTCCTTGTCA 58.573 47.619 8.69 0.00 44.79 3.58
5563 6083 7.210873 AGGTTGAAGTAGTAATAGCACATAGC 58.789 38.462 0.00 0.00 46.19 2.97
5564 6084 9.601217 AAAGGTTGAAGTAGTAATAGCACATAG 57.399 33.333 0.00 0.00 0.00 2.23
5565 6085 9.953565 AAAAGGTTGAAGTAGTAATAGCACATA 57.046 29.630 0.00 0.00 0.00 2.29
5566 6086 8.863872 AAAAGGTTGAAGTAGTAATAGCACAT 57.136 30.769 0.00 0.00 0.00 3.21
5567 6087 9.953565 ATAAAAGGTTGAAGTAGTAATAGCACA 57.046 29.630 0.00 0.00 0.00 4.57
5569 6089 9.953565 ACATAAAAGGTTGAAGTAGTAATAGCA 57.046 29.630 0.00 0.00 0.00 3.49
5575 6095 9.211485 GCAAGTACATAAAAGGTTGAAGTAGTA 57.789 33.333 0.00 0.00 0.00 1.82
5576 6096 7.937394 AGCAAGTACATAAAAGGTTGAAGTAGT 59.063 33.333 0.00 0.00 0.00 2.73
5577 6097 8.324163 AGCAAGTACATAAAAGGTTGAAGTAG 57.676 34.615 0.00 0.00 0.00 2.57
5578 6098 9.211485 GTAGCAAGTACATAAAAGGTTGAAGTA 57.789 33.333 0.00 0.00 0.00 2.24
5579 6099 7.937394 AGTAGCAAGTACATAAAAGGTTGAAGT 59.063 33.333 0.00 0.00 33.55 3.01
5580 6100 8.230486 CAGTAGCAAGTACATAAAAGGTTGAAG 58.770 37.037 0.00 0.00 33.55 3.02
5581 6101 7.308348 GCAGTAGCAAGTACATAAAAGGTTGAA 60.308 37.037 0.00 0.00 41.58 2.69
5582 6102 6.148811 GCAGTAGCAAGTACATAAAAGGTTGA 59.851 38.462 0.00 0.00 41.58 3.18
5583 6103 6.314784 GCAGTAGCAAGTACATAAAAGGTTG 58.685 40.000 0.00 0.00 41.58 3.77
5584 6104 6.496338 GCAGTAGCAAGTACATAAAAGGTT 57.504 37.500 0.00 0.00 41.58 3.50
5595 6115 9.873655 CTGAAATCCAGTCTGCAGTAGCAAGTA 62.874 44.444 14.67 0.00 43.27 2.24
5597 6117 6.871364 CTGAAATCCAGTCTGCAGTAGCAAG 61.871 48.000 14.67 0.00 43.27 4.01
5598 6118 5.099656 CTGAAATCCAGTCTGCAGTAGCAA 61.100 45.833 14.67 0.00 43.27 3.91
5599 6119 3.618263 CTGAAATCCAGTCTGCAGTAGCA 60.618 47.826 14.67 0.00 42.42 3.49
5600 6120 2.935201 CTGAAATCCAGTCTGCAGTAGC 59.065 50.000 14.67 5.62 38.10 3.58
5601 6121 4.462508 TCTGAAATCCAGTCTGCAGTAG 57.537 45.455 14.67 4.75 43.38 2.57
5602 6122 4.890158 TTCTGAAATCCAGTCTGCAGTA 57.110 40.909 14.67 0.00 43.38 2.74
5603 6123 3.777106 TTCTGAAATCCAGTCTGCAGT 57.223 42.857 14.67 0.00 43.38 4.40
5604 6124 4.259356 TCATTCTGAAATCCAGTCTGCAG 58.741 43.478 7.63 7.63 43.38 4.41
5605 6125 4.290711 TCATTCTGAAATCCAGTCTGCA 57.709 40.909 0.00 0.00 43.38 4.41
5606 6126 5.831702 AATCATTCTGAAATCCAGTCTGC 57.168 39.130 0.00 0.00 43.38 4.26
5607 6127 7.767659 TCTGTAATCATTCTGAAATCCAGTCTG 59.232 37.037 0.00 0.00 43.38 3.51
5608 6128 7.855375 TCTGTAATCATTCTGAAATCCAGTCT 58.145 34.615 0.00 0.00 43.38 3.24
5609 6129 7.984050 TCTCTGTAATCATTCTGAAATCCAGTC 59.016 37.037 0.00 0.00 43.38 3.51
5610 6130 7.855375 TCTCTGTAATCATTCTGAAATCCAGT 58.145 34.615 0.00 0.00 43.38 4.00
5611 6131 8.610896 GTTCTCTGTAATCATTCTGAAATCCAG 58.389 37.037 0.00 0.00 44.27 3.86
5612 6132 8.102676 TGTTCTCTGTAATCATTCTGAAATCCA 58.897 33.333 0.00 0.00 0.00 3.41
5613 6133 8.498054 TGTTCTCTGTAATCATTCTGAAATCC 57.502 34.615 0.00 0.00 0.00 3.01
5614 6134 8.121708 GCTGTTCTCTGTAATCATTCTGAAATC 58.878 37.037 0.00 0.00 0.00 2.17
5615 6135 7.609146 TGCTGTTCTCTGTAATCATTCTGAAAT 59.391 33.333 0.00 0.00 0.00 2.17
5616 6136 6.936335 TGCTGTTCTCTGTAATCATTCTGAAA 59.064 34.615 0.00 0.00 0.00 2.69
5617 6137 6.466812 TGCTGTTCTCTGTAATCATTCTGAA 58.533 36.000 0.00 0.00 0.00 3.02
5618 6138 6.041423 TGCTGTTCTCTGTAATCATTCTGA 57.959 37.500 0.00 0.00 0.00 3.27
5619 6139 6.148315 TGTTGCTGTTCTCTGTAATCATTCTG 59.852 38.462 0.00 0.00 0.00 3.02
5620 6140 6.233434 TGTTGCTGTTCTCTGTAATCATTCT 58.767 36.000 0.00 0.00 0.00 2.40
5621 6141 6.486253 TGTTGCTGTTCTCTGTAATCATTC 57.514 37.500 0.00 0.00 0.00 2.67
5622 6142 6.656270 TGATGTTGCTGTTCTCTGTAATCATT 59.344 34.615 0.00 0.00 0.00 2.57
5623 6143 6.175471 TGATGTTGCTGTTCTCTGTAATCAT 58.825 36.000 0.00 0.00 0.00 2.45
5624 6144 5.550290 TGATGTTGCTGTTCTCTGTAATCA 58.450 37.500 0.00 0.00 0.00 2.57
5625 6145 6.314648 TCATGATGTTGCTGTTCTCTGTAATC 59.685 38.462 0.00 0.00 0.00 1.75
5626 6146 6.175471 TCATGATGTTGCTGTTCTCTGTAAT 58.825 36.000 0.00 0.00 0.00 1.89
5627 6147 5.550290 TCATGATGTTGCTGTTCTCTGTAA 58.450 37.500 0.00 0.00 0.00 2.41
5628 6148 5.151297 TCATGATGTTGCTGTTCTCTGTA 57.849 39.130 0.00 0.00 0.00 2.74
5629 6149 4.011966 TCATGATGTTGCTGTTCTCTGT 57.988 40.909 0.00 0.00 0.00 3.41
5630 6150 4.201920 CCATCATGATGTTGCTGTTCTCTG 60.202 45.833 29.23 9.54 37.11 3.35
5631 6151 3.945921 CCATCATGATGTTGCTGTTCTCT 59.054 43.478 29.23 0.00 37.11 3.10
5632 6152 3.693085 ACCATCATGATGTTGCTGTTCTC 59.307 43.478 29.23 0.00 37.11 2.87
5633 6153 3.693807 ACCATCATGATGTTGCTGTTCT 58.306 40.909 29.23 0.84 37.11 3.01
5634 6154 4.877823 TCTACCATCATGATGTTGCTGTTC 59.122 41.667 29.23 0.00 37.11 3.18
5635 6155 4.847198 TCTACCATCATGATGTTGCTGTT 58.153 39.130 29.23 10.48 37.11 3.16
5636 6156 4.492494 TCTACCATCATGATGTTGCTGT 57.508 40.909 29.23 22.04 37.11 4.40
5637 6157 5.587443 TCTTTCTACCATCATGATGTTGCTG 59.413 40.000 29.23 18.11 37.11 4.41
5638 6158 5.748402 TCTTTCTACCATCATGATGTTGCT 58.252 37.500 29.23 14.04 37.11 3.91
5639 6159 6.261118 GTTCTTTCTACCATCATGATGTTGC 58.739 40.000 29.23 7.91 37.11 4.17
5640 6160 6.375174 TGGTTCTTTCTACCATCATGATGTTG 59.625 38.462 29.23 19.37 40.65 3.33
5641 6161 6.484288 TGGTTCTTTCTACCATCATGATGTT 58.516 36.000 29.23 20.90 40.65 2.71
5642 6162 6.065976 TGGTTCTTTCTACCATCATGATGT 57.934 37.500 29.23 20.57 40.65 3.06
5643 6163 7.578310 ATTGGTTCTTTCTACCATCATGATG 57.422 36.000 25.97 25.97 44.70 3.07
5644 6164 9.699410 TTTATTGGTTCTTTCTACCATCATGAT 57.301 29.630 1.18 1.18 44.70 2.45
5645 6165 9.699410 ATTTATTGGTTCTTTCTACCATCATGA 57.301 29.630 0.00 0.00 44.70 3.07
5646 6166 9.740239 CATTTATTGGTTCTTTCTACCATCATG 57.260 33.333 0.00 0.00 44.70 3.07
5647 6167 8.416329 GCATTTATTGGTTCTTTCTACCATCAT 58.584 33.333 0.00 0.00 44.70 2.45
5648 6168 7.395772 TGCATTTATTGGTTCTTTCTACCATCA 59.604 33.333 0.00 0.00 44.70 3.07
5649 6169 7.771183 TGCATTTATTGGTTCTTTCTACCATC 58.229 34.615 0.00 0.00 44.70 3.51
5650 6170 7.397192 ACTGCATTTATTGGTTCTTTCTACCAT 59.603 33.333 0.00 0.00 44.70 3.55
5651 6171 6.719370 ACTGCATTTATTGGTTCTTTCTACCA 59.281 34.615 0.00 0.00 43.71 3.25
5652 6172 7.121315 AGACTGCATTTATTGGTTCTTTCTACC 59.879 37.037 0.00 0.00 36.17 3.18
5653 6173 7.965107 CAGACTGCATTTATTGGTTCTTTCTAC 59.035 37.037 0.00 0.00 0.00 2.59
5654 6174 7.121168 CCAGACTGCATTTATTGGTTCTTTCTA 59.879 37.037 0.00 0.00 0.00 2.10
5655 6175 6.071728 CCAGACTGCATTTATTGGTTCTTTCT 60.072 38.462 0.00 0.00 0.00 2.52
5656 6176 6.095377 CCAGACTGCATTTATTGGTTCTTTC 58.905 40.000 0.00 0.00 0.00 2.62
5657 6177 5.047092 CCCAGACTGCATTTATTGGTTCTTT 60.047 40.000 0.00 0.00 0.00 2.52
5658 6178 4.463891 CCCAGACTGCATTTATTGGTTCTT 59.536 41.667 0.00 0.00 0.00 2.52
5659 6179 4.019174 CCCAGACTGCATTTATTGGTTCT 58.981 43.478 0.00 0.00 0.00 3.01
5660 6180 3.763897 ACCCAGACTGCATTTATTGGTTC 59.236 43.478 0.00 0.00 0.00 3.62
5661 6181 3.778265 ACCCAGACTGCATTTATTGGTT 58.222 40.909 0.00 0.00 0.00 3.67
5662 6182 3.456380 ACCCAGACTGCATTTATTGGT 57.544 42.857 0.00 0.00 0.00 3.67
5663 6183 4.806640 AAACCCAGACTGCATTTATTGG 57.193 40.909 0.00 0.00 0.00 3.16
5664 6184 5.652014 TCCTAAACCCAGACTGCATTTATTG 59.348 40.000 0.00 0.13 0.00 1.90
5665 6185 5.826643 TCCTAAACCCAGACTGCATTTATT 58.173 37.500 0.00 0.00 0.00 1.40
5666 6186 5.450818 TCCTAAACCCAGACTGCATTTAT 57.549 39.130 0.00 0.00 0.00 1.40
5667 6187 4.919774 TCCTAAACCCAGACTGCATTTA 57.080 40.909 0.00 3.46 0.00 1.40
5668 6188 3.806949 TCCTAAACCCAGACTGCATTT 57.193 42.857 0.00 2.42 0.00 2.32
5669 6189 3.806949 TTCCTAAACCCAGACTGCATT 57.193 42.857 0.00 0.00 0.00 3.56
5670 6190 3.421844 GTTTCCTAAACCCAGACTGCAT 58.578 45.455 0.00 0.00 35.35 3.96
5671 6191 2.858745 GTTTCCTAAACCCAGACTGCA 58.141 47.619 0.00 0.00 35.35 4.41
5681 6201 9.103861 TCATTCAACAATTTTGGTTTCCTAAAC 57.896 29.630 0.00 0.00 40.65 2.01
5682 6202 9.672673 TTCATTCAACAATTTTGGTTTCCTAAA 57.327 25.926 0.00 0.00 33.41 1.85
5683 6203 9.672673 TTTCATTCAACAATTTTGGTTTCCTAA 57.327 25.926 0.00 0.00 0.00 2.69
5684 6204 9.323985 CTTTCATTCAACAATTTTGGTTTCCTA 57.676 29.630 0.00 0.00 0.00 2.94
5685 6205 7.282901 CCTTTCATTCAACAATTTTGGTTTCCT 59.717 33.333 0.00 0.00 0.00 3.36
5686 6206 7.416817 CCTTTCATTCAACAATTTTGGTTTCC 58.583 34.615 0.00 0.00 0.00 3.13
5687 6207 6.912051 GCCTTTCATTCAACAATTTTGGTTTC 59.088 34.615 0.00 0.00 0.00 2.78
5688 6208 6.602803 AGCCTTTCATTCAACAATTTTGGTTT 59.397 30.769 0.00 0.00 0.00 3.27
5689 6209 6.121590 AGCCTTTCATTCAACAATTTTGGTT 58.878 32.000 0.00 0.00 0.00 3.67
5690 6210 5.683681 AGCCTTTCATTCAACAATTTTGGT 58.316 33.333 0.00 0.00 0.00 3.67
5691 6211 6.622833 AAGCCTTTCATTCAACAATTTTGG 57.377 33.333 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.