Multiple sequence alignment - TraesCS1D01G031100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G031100 chr1D 100.000 4328 0 0 1 4328 12251931 12247604 0.000000e+00 7993.0
1 TraesCS1D01G031100 chr1D 93.504 1170 60 2 2250 3417 12179363 12178208 0.000000e+00 1725.0
2 TraesCS1D01G031100 chr1D 95.339 236 10 1 923 1157 12180514 12180279 1.470000e-99 374.0
3 TraesCS1D01G031100 chr1D 94.286 210 10 2 1846 2055 12179563 12179356 1.940000e-83 320.0
4 TraesCS1D01G031100 chr1D 87.925 265 17 4 1226 1480 12180186 12179927 9.100000e-77 298.0
5 TraesCS1D01G031100 chr1D 97.872 47 1 0 3418 3464 212496098 212496144 9.980000e-12 82.4
6 TraesCS1D01G031100 chr1D 100.000 35 0 0 1157 1191 12250728 12250694 1.000000e-06 65.8
7 TraesCS1D01G031100 chr1D 100.000 35 0 0 1204 1238 12250775 12250741 1.000000e-06 65.8
8 TraesCS1D01G031100 chr1D 97.297 37 1 0 1813 1849 12179679 12179643 3.610000e-06 63.9
9 TraesCS1D01G031100 chr1A 95.214 1170 54 1 2250 3417 14109296 14108127 0.000000e+00 1849.0
10 TraesCS1D01G031100 chr1A 95.448 703 31 1 2688 3390 14117873 14117172 0.000000e+00 1120.0
11 TraesCS1D01G031100 chr1A 89.100 844 57 13 1224 2055 14127851 14127031 0.000000e+00 1016.0
12 TraesCS1D01G031100 chr1A 87.058 904 80 18 1169 2055 14110172 14109289 0.000000e+00 987.0
13 TraesCS1D01G031100 chr1A 92.360 445 34 0 2250 2694 14127038 14126594 6.110000e-178 634.0
14 TraesCS1D01G031100 chr1A 88.856 341 19 6 836 1157 14110556 14110216 6.740000e-108 401.0
15 TraesCS1D01G031100 chr1A 81.441 458 38 21 209 665 460327921 460328332 8.970000e-87 331.0
16 TraesCS1D01G031100 chr1A 87.814 279 16 7 1 267 460327669 460327941 1.170000e-80 311.0
17 TraesCS1D01G031100 chr1A 89.754 244 14 4 924 1157 14128183 14127941 7.030000e-78 302.0
18 TraesCS1D01G031100 chr1A 94.083 169 9 1 7 175 13969881 13969714 5.550000e-64 255.0
19 TraesCS1D01G031100 chr1A 95.327 107 3 2 835 941 14128543 14128439 7.440000e-38 169.0
20 TraesCS1D01G031100 chr1A 82.877 146 21 4 675 817 381319433 381319289 1.260000e-25 128.0
21 TraesCS1D01G031100 chr5A 93.277 833 51 5 3498 4328 20496179 20497008 0.000000e+00 1223.0
22 TraesCS1D01G031100 chr5A 88.480 625 41 6 1 605 491230688 491230075 0.000000e+00 726.0
23 TraesCS1D01G031100 chr5A 92.414 145 11 0 675 819 491229936 491229792 1.580000e-49 207.0
24 TraesCS1D01G031100 chr5A 97.297 37 1 0 2948 2984 690431863 690431899 3.610000e-06 63.9
25 TraesCS1D01G031100 chr7D 92.075 858 62 6 3474 4328 361129716 361130570 0.000000e+00 1203.0
26 TraesCS1D01G031100 chr7D 92.814 835 52 8 3498 4328 455480873 455480043 0.000000e+00 1203.0
27 TraesCS1D01G031100 chr7D 92.437 833 55 8 3500 4328 291549652 291550480 0.000000e+00 1182.0
28 TraesCS1D01G031100 chr7D 91.726 846 64 6 3485 4327 108680642 108681484 0.000000e+00 1170.0
29 TraesCS1D01G031100 chr7D 87.500 696 44 22 3 668 436112758 436112076 0.000000e+00 763.0
30 TraesCS1D01G031100 chr7D 86.801 697 48 22 1 665 59395929 59396613 0.000000e+00 737.0
31 TraesCS1D01G031100 chr7D 92.000 175 12 2 1 175 581090894 581090722 1.200000e-60 244.0
32 TraesCS1D01G031100 chr7D 88.816 152 16 1 675 825 418947724 418947875 7.390000e-43 185.0
33 TraesCS1D01G031100 chr7D 87.671 146 13 4 675 819 18126748 18126607 9.630000e-37 165.0
34 TraesCS1D01G031100 chr2D 92.822 822 49 9 3510 4325 412378384 412379201 0.000000e+00 1182.0
35 TraesCS1D01G031100 chr4D 91.953 845 57 7 3484 4325 35737182 35736346 0.000000e+00 1173.0
36 TraesCS1D01G031100 chr4D 85.185 162 17 7 675 831 346158747 346158588 4.480000e-35 159.0
37 TraesCS1D01G031100 chr4D 97.872 47 1 0 3418 3464 37432449 37432403 9.980000e-12 82.4
38 TraesCS1D01G031100 chr4D 97.872 47 1 0 3418 3464 344812592 344812546 9.980000e-12 82.4
39 TraesCS1D01G031100 chr4D 97.872 47 1 0 3418 3464 423863151 423863197 9.980000e-12 82.4
40 TraesCS1D01G031100 chr3D 91.492 858 63 10 3476 4328 496858181 496857329 0.000000e+00 1171.0
41 TraesCS1D01G031100 chr3D 82.363 1202 167 19 2251 3417 570146249 570145058 0.000000e+00 1003.0
42 TraesCS1D01G031100 chr3D 81.504 1130 180 18 2250 3357 568088094 568086972 0.000000e+00 902.0
43 TraesCS1D01G031100 chr3D 91.429 175 13 2 1 175 74757574 74757402 5.590000e-59 239.0
44 TraesCS1D01G031100 chr3D 90.058 171 12 4 2 172 347486374 347486539 2.620000e-52 217.0
45 TraesCS1D01G031100 chr3D 78.818 203 35 7 2053 2250 20330321 20330520 3.510000e-26 130.0
46 TraesCS1D01G031100 chr3D 89.011 91 8 1 1741 1831 568367277 568367189 1.270000e-20 111.0
47 TraesCS1D01G031100 chr5D 91.452 854 63 10 3482 4328 150786753 150785903 0.000000e+00 1164.0
48 TraesCS1D01G031100 chr5D 90.717 614 28 7 7 605 268878340 268877741 0.000000e+00 791.0
49 TraesCS1D01G031100 chr5D 87.037 702 50 20 1 668 522049719 522049025 0.000000e+00 754.0
50 TraesCS1D01G031100 chr5D 86.266 699 52 17 2 668 268693066 268692380 0.000000e+00 719.0
51 TraesCS1D01G031100 chr5D 91.250 160 13 1 13 172 381813425 381813267 2.620000e-52 217.0
52 TraesCS1D01G031100 chr5D 92.381 105 4 4 71 175 461571990 461572090 3.490000e-31 147.0
53 TraesCS1D01G031100 chr5D 76.847 203 42 4 2050 2249 514508489 514508689 4.580000e-20 110.0
54 TraesCS1D01G031100 chr3B 81.417 1200 183 19 2250 3417 756823823 756822632 0.000000e+00 944.0
55 TraesCS1D01G031100 chr3B 81.302 1198 187 16 2250 3417 756708691 756707501 0.000000e+00 937.0
56 TraesCS1D01G031100 chr3B 80.906 1126 194 13 2247 3354 756589268 756590390 0.000000e+00 869.0
57 TraesCS1D01G031100 chr3B 80.817 1126 195 13 2247 3354 756602652 756603774 0.000000e+00 863.0
58 TraesCS1D01G031100 chr3B 80.941 808 122 13 2640 3417 756743826 756743021 1.030000e-170 610.0
59 TraesCS1D01G031100 chr3B 80.941 808 122 13 2640 3417 756788429 756787624 1.030000e-170 610.0
60 TraesCS1D01G031100 chr3B 75.953 341 50 21 832 1153 756588133 756588460 3.490000e-31 147.0
61 TraesCS1D01G031100 chr3B 75.953 341 50 21 832 1153 756601271 756601598 3.490000e-31 147.0
62 TraesCS1D01G031100 chr3B 83.221 149 20 4 675 819 99537459 99537312 9.770000e-27 132.0
63 TraesCS1D01G031100 chrUn 81.028 1128 189 10 2250 3357 264010544 264009422 0.000000e+00 874.0
64 TraesCS1D01G031100 chrUn 81.028 1128 189 10 2250 3357 294197018 294195896 0.000000e+00 874.0
65 TraesCS1D01G031100 chrUn 94.472 199 8 2 2056 2251 136329392 136329590 1.960000e-78 303.0
66 TraesCS1D01G031100 chr6A 87.464 702 47 24 1 668 613634693 613633999 0.000000e+00 771.0
67 TraesCS1D01G031100 chr6A 89.412 170 12 3 3 172 502364751 502364914 4.390000e-50 209.0
68 TraesCS1D01G031100 chr7A 85.307 701 50 22 1 668 728013719 728013039 0.000000e+00 675.0
69 TraesCS1D01G031100 chr7A 91.228 171 11 4 3 172 83084633 83084800 3.370000e-56 230.0
70 TraesCS1D01G031100 chr7A 92.473 93 7 0 675 767 5157207 5157299 2.720000e-27 134.0
71 TraesCS1D01G031100 chr4B 84.023 701 63 21 1 665 5921834 5922521 2.840000e-176 628.0
72 TraesCS1D01G031100 chr4B 77.889 199 37 6 2056 2249 493633724 493633920 2.730000e-22 117.0
73 TraesCS1D01G031100 chr5B 94.898 196 9 1 2055 2249 649008875 649008680 5.440000e-79 305.0
74 TraesCS1D01G031100 chr5B 94.472 199 7 3 2055 2249 589464155 589463957 1.960000e-78 303.0
75 TraesCS1D01G031100 chr2A 93.939 198 8 3 2056 2249 734831781 734831978 3.270000e-76 296.0
76 TraesCS1D01G031100 chr3A 92.941 170 10 2 3 172 19090642 19090809 3.340000e-61 246.0
77 TraesCS1D01G031100 chr3A 97.872 47 1 0 3418 3464 212116150 212116196 9.980000e-12 82.4
78 TraesCS1D01G031100 chr1B 92.308 169 12 1 7 175 642796678 642796511 5.590000e-59 239.0
79 TraesCS1D01G031100 chr1B 90.751 173 10 4 3 175 379627418 379627252 4.350000e-55 226.0
80 TraesCS1D01G031100 chr1B 78.713 202 35 8 2057 2254 604640436 604640239 1.260000e-25 128.0
81 TraesCS1D01G031100 chr1B 77.103 214 35 10 2050 2255 680159038 680158831 1.270000e-20 111.0
82 TraesCS1D01G031100 chr7B 81.379 145 23 4 675 816 576676403 576676546 9.840000e-22 115.0
83 TraesCS1D01G031100 chr6D 98.077 52 1 0 3413 3464 227410320 227410269 1.660000e-14 91.6
84 TraesCS1D01G031100 chr6D 97.872 47 1 0 3418 3464 174375554 174375600 9.980000e-12 82.4
85 TraesCS1D01G031100 chr6D 97.872 47 1 0 3418 3464 174380562 174380608 9.980000e-12 82.4
86 TraesCS1D01G031100 chr4A 92.727 55 2 2 3411 3464 207371758 207371811 1.290000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G031100 chr1D 12247604 12251931 4327 True 2708.20 7993 100.00000 1 4328 3 chr1D.!!$R2 4327
1 TraesCS1D01G031100 chr1D 12178208 12180514 2306 True 556.18 1725 93.67020 923 3417 5 chr1D.!!$R1 2494
2 TraesCS1D01G031100 chr1A 14117172 14117873 701 True 1120.00 1120 95.44800 2688 3390 1 chr1A.!!$R2 702
3 TraesCS1D01G031100 chr1A 14108127 14110556 2429 True 1079.00 1849 90.37600 836 3417 3 chr1A.!!$R4 2581
4 TraesCS1D01G031100 chr1A 14126594 14128543 1949 True 530.25 1016 91.63525 835 2694 4 chr1A.!!$R5 1859
5 TraesCS1D01G031100 chr1A 460327669 460328332 663 False 321.00 331 84.62750 1 665 2 chr1A.!!$F1 664
6 TraesCS1D01G031100 chr5A 20496179 20497008 829 False 1223.00 1223 93.27700 3498 4328 1 chr5A.!!$F1 830
7 TraesCS1D01G031100 chr5A 491229792 491230688 896 True 466.50 726 90.44700 1 819 2 chr5A.!!$R1 818
8 TraesCS1D01G031100 chr7D 361129716 361130570 854 False 1203.00 1203 92.07500 3474 4328 1 chr7D.!!$F4 854
9 TraesCS1D01G031100 chr7D 455480043 455480873 830 True 1203.00 1203 92.81400 3498 4328 1 chr7D.!!$R3 830
10 TraesCS1D01G031100 chr7D 291549652 291550480 828 False 1182.00 1182 92.43700 3500 4328 1 chr7D.!!$F3 828
11 TraesCS1D01G031100 chr7D 108680642 108681484 842 False 1170.00 1170 91.72600 3485 4327 1 chr7D.!!$F2 842
12 TraesCS1D01G031100 chr7D 436112076 436112758 682 True 763.00 763 87.50000 3 668 1 chr7D.!!$R2 665
13 TraesCS1D01G031100 chr7D 59395929 59396613 684 False 737.00 737 86.80100 1 665 1 chr7D.!!$F1 664
14 TraesCS1D01G031100 chr2D 412378384 412379201 817 False 1182.00 1182 92.82200 3510 4325 1 chr2D.!!$F1 815
15 TraesCS1D01G031100 chr4D 35736346 35737182 836 True 1173.00 1173 91.95300 3484 4325 1 chr4D.!!$R1 841
16 TraesCS1D01G031100 chr3D 496857329 496858181 852 True 1171.00 1171 91.49200 3476 4328 1 chr3D.!!$R2 852
17 TraesCS1D01G031100 chr3D 570145058 570146249 1191 True 1003.00 1003 82.36300 2251 3417 1 chr3D.!!$R5 1166
18 TraesCS1D01G031100 chr3D 568086972 568088094 1122 True 902.00 902 81.50400 2250 3357 1 chr3D.!!$R3 1107
19 TraesCS1D01G031100 chr5D 150785903 150786753 850 True 1164.00 1164 91.45200 3482 4328 1 chr5D.!!$R1 846
20 TraesCS1D01G031100 chr5D 268877741 268878340 599 True 791.00 791 90.71700 7 605 1 chr5D.!!$R3 598
21 TraesCS1D01G031100 chr5D 522049025 522049719 694 True 754.00 754 87.03700 1 668 1 chr5D.!!$R5 667
22 TraesCS1D01G031100 chr5D 268692380 268693066 686 True 719.00 719 86.26600 2 668 1 chr5D.!!$R2 666
23 TraesCS1D01G031100 chr3B 756822632 756823823 1191 True 944.00 944 81.41700 2250 3417 1 chr3B.!!$R5 1167
24 TraesCS1D01G031100 chr3B 756707501 756708691 1190 True 937.00 937 81.30200 2250 3417 1 chr3B.!!$R2 1167
25 TraesCS1D01G031100 chr3B 756743021 756743826 805 True 610.00 610 80.94100 2640 3417 1 chr3B.!!$R3 777
26 TraesCS1D01G031100 chr3B 756787624 756788429 805 True 610.00 610 80.94100 2640 3417 1 chr3B.!!$R4 777
27 TraesCS1D01G031100 chr3B 756588133 756590390 2257 False 508.00 869 78.42950 832 3354 2 chr3B.!!$F1 2522
28 TraesCS1D01G031100 chr3B 756601271 756603774 2503 False 505.00 863 78.38500 832 3354 2 chr3B.!!$F2 2522
29 TraesCS1D01G031100 chrUn 264009422 264010544 1122 True 874.00 874 81.02800 2250 3357 1 chrUn.!!$R1 1107
30 TraesCS1D01G031100 chrUn 294195896 294197018 1122 True 874.00 874 81.02800 2250 3357 1 chrUn.!!$R2 1107
31 TraesCS1D01G031100 chr6A 613633999 613634693 694 True 771.00 771 87.46400 1 668 1 chr6A.!!$R1 667
32 TraesCS1D01G031100 chr7A 728013039 728013719 680 True 675.00 675 85.30700 1 668 1 chr7A.!!$R1 667
33 TraesCS1D01G031100 chr4B 5921834 5922521 687 False 628.00 628 84.02300 1 665 1 chr4B.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 456 0.320946 GCAACCTAACTACACCGGCA 60.321 55.0 0.00 0.0 0.0 5.69 F
2120 3304 0.106967 GAAACAGATCAGGGAGGGCC 60.107 60.0 0.00 0.0 0.0 5.80 F
3121 4324 0.249398 GGTGCACGACCCTAGAACAT 59.751 55.0 11.45 0.0 39.1 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 3426 0.037975 CTTTCCATGCAACCAGTGGC 60.038 55.000 9.78 0.0 33.01 5.01 R
3303 4512 0.179000 CCTTTGCGAGGGATACAGCT 59.821 55.000 0.00 0.0 42.26 4.24 R
4205 5437 8.476064 TTTCATAAGCTTTCCAATGCCATATA 57.524 30.769 3.20 0.0 0.00 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 6.127366 TGCAGAAATCTTTTGAAACAAGACCT 60.127 34.615 0.00 0.00 33.04 3.85
236 251 7.493971 GCTATGAGCTTTAGAGAAAATCACAGA 59.506 37.037 8.42 0.00 38.45 3.41
253 308 4.082190 TCACAGAGAATCCTACGGAAACTG 60.082 45.833 0.00 0.00 34.34 3.16
281 336 9.336171 GAGCTCAAGAAATCCAGAAATAATACT 57.664 33.333 9.40 0.00 0.00 2.12
390 456 0.320946 GCAACCTAACTACACCGGCA 60.321 55.000 0.00 0.00 0.00 5.69
444 513 1.133792 ACCACTCTCCAACAAACCAGG 60.134 52.381 0.00 0.00 0.00 4.45
450 519 0.817634 TCCAACAAACCAGGCGTCTG 60.818 55.000 10.88 10.88 40.59 3.51
519 593 1.278238 GGAGAACCGCTATGAACACG 58.722 55.000 0.00 0.00 0.00 4.49
572 656 4.023291 GAGGGGAGATCTCAGATCCATAC 58.977 52.174 23.85 10.69 34.62 2.39
573 657 3.103742 GGGGAGATCTCAGATCCATACC 58.896 54.545 23.85 11.92 34.62 2.73
574 658 3.245948 GGGGAGATCTCAGATCCATACCT 60.246 52.174 23.85 0.00 34.62 3.08
575 659 3.768757 GGGAGATCTCAGATCCATACCTG 59.231 52.174 23.85 0.00 34.62 4.00
576 660 3.195396 GGAGATCTCAGATCCATACCTGC 59.805 52.174 23.85 0.00 33.08 4.85
577 661 4.088634 GAGATCTCAGATCCATACCTGCT 58.911 47.826 18.11 0.00 0.00 4.24
578 662 3.833650 AGATCTCAGATCCATACCTGCTG 59.166 47.826 11.33 0.00 0.00 4.41
684 844 0.387239 GCACGGTGATGAAACAAGGC 60.387 55.000 13.29 0.00 0.00 4.35
689 849 1.815003 GGTGATGAAACAAGGCCTCTG 59.185 52.381 5.23 9.66 0.00 3.35
693 853 3.569701 TGATGAAACAAGGCCTCTGTTTC 59.430 43.478 36.07 36.07 46.65 2.78
701 861 2.222027 AGGCCTCTGTTTCAGAAAACG 58.778 47.619 0.00 0.00 46.39 3.60
747 907 1.335415 CGCTCTCGTCCATTCGATCAT 60.335 52.381 0.00 0.00 39.12 2.45
763 923 2.180432 TCATAGACGATCCGACGGAT 57.820 50.000 29.07 29.07 46.28 4.18
809 969 1.246056 TGTCGGTCGGGTGAAGGTAG 61.246 60.000 0.00 0.00 0.00 3.18
819 979 1.354705 GGTGAAGGTAGGCTTTTCCCT 59.645 52.381 0.00 0.00 39.05 4.20
820 980 2.225041 GGTGAAGGTAGGCTTTTCCCTT 60.225 50.000 0.00 0.00 39.96 3.95
821 981 3.497332 GTGAAGGTAGGCTTTTCCCTTT 58.503 45.455 0.00 0.00 37.43 3.11
822 982 3.895656 GTGAAGGTAGGCTTTTCCCTTTT 59.104 43.478 0.00 0.00 37.43 2.27
823 983 4.344102 GTGAAGGTAGGCTTTTCCCTTTTT 59.656 41.667 0.00 0.00 37.43 1.94
863 1023 4.082787 CCAGATTTAGGTGCAACGACATTT 60.083 41.667 0.00 0.00 38.12 2.32
873 1033 2.384382 CAACGACATTTTCAGCACCAC 58.616 47.619 0.00 0.00 0.00 4.16
902 1062 2.419297 GCTACAGTGAATGGTCCCAGAG 60.419 54.545 0.00 0.00 0.00 3.35
972 1438 4.508461 TGCAGATTCCATCAAACTTGTG 57.492 40.909 0.00 0.00 0.00 3.33
1042 1514 1.631071 TATGAATCCAGGGCACGGCA 61.631 55.000 0.00 0.00 0.00 5.69
1091 1563 3.459232 TCAGGTGGCATCTTATCTTCG 57.541 47.619 0.00 0.00 0.00 3.79
1159 1639 3.951037 TGCTTCCAAAACTGAACTTGCTA 59.049 39.130 0.00 0.00 0.00 3.49
1160 1640 4.202010 TGCTTCCAAAACTGAACTTGCTAC 60.202 41.667 0.00 0.00 0.00 3.58
1161 1641 4.202010 GCTTCCAAAACTGAACTTGCTACA 60.202 41.667 0.00 0.00 0.00 2.74
1163 1643 3.315191 TCCAAAACTGAACTTGCTACAGC 59.685 43.478 0.00 0.00 42.50 4.40
1164 1644 3.550842 CCAAAACTGAACTTGCTACAGCC 60.551 47.826 0.00 0.00 41.18 4.85
1165 1645 1.512926 AACTGAACTTGCTACAGCCG 58.487 50.000 0.00 0.00 41.18 5.52
1167 1647 1.276421 ACTGAACTTGCTACAGCCGAT 59.724 47.619 0.00 0.00 41.18 4.18
1191 1767 6.814954 AGAGCAACCCTAGATAAGAAATCA 57.185 37.500 0.00 0.00 0.00 2.57
1193 1769 7.633789 AGAGCAACCCTAGATAAGAAATCAAA 58.366 34.615 0.00 0.00 0.00 2.69
1195 1771 6.830838 AGCAACCCTAGATAAGAAATCAAAGG 59.169 38.462 0.00 0.00 0.00 3.11
1197 1773 7.012799 GCAACCCTAGATAAGAAATCAAAGGAG 59.987 40.741 0.00 2.80 0.00 3.69
1200 1776 8.268605 ACCCTAGATAAGAAATCAAAGGAGAAC 58.731 37.037 0.00 0.00 0.00 3.01
1204 1780 8.049655 AGATAAGAAATCAAAGGAGAACAAGC 57.950 34.615 0.00 0.00 0.00 4.01
1205 1781 7.887495 AGATAAGAAATCAAAGGAGAACAAGCT 59.113 33.333 0.00 0.00 0.00 3.74
1207 1783 6.809630 AGAAATCAAAGGAGAACAAGCTAC 57.190 37.500 0.00 0.00 0.00 3.58
1222 1798 1.067821 AGCTACAGCCGATAGAGCAAC 59.932 52.381 0.00 0.00 43.38 4.17
1397 1973 8.594881 AGAATGCTATAGTGTTATACTTGTGC 57.405 34.615 0.84 0.00 40.89 4.57
1406 1982 6.427150 AGTGTTATACTTGTGCGAAAAGTTG 58.573 36.000 4.12 0.00 38.73 3.16
1420 1996 4.086126 CGAAAAGTTGTGCGAACAAATGAG 60.086 41.667 11.44 0.00 0.00 2.90
1443 2029 9.699410 TGAGTTCCATGGTATTCTATTTTTGAT 57.301 29.630 12.58 0.00 0.00 2.57
1490 2077 7.273381 CACACTTTTTGAACTCTCGATTTGTTT 59.727 33.333 0.00 0.00 0.00 2.83
1537 2124 0.391597 AAGTCACTCCTTCGCGGAAA 59.608 50.000 6.13 0.00 42.53 3.13
1542 2129 2.882137 TCACTCCTTCGCGGAAATTTTT 59.118 40.909 6.13 0.00 42.53 1.94
1543 2130 2.979813 CACTCCTTCGCGGAAATTTTTG 59.020 45.455 6.13 0.00 42.53 2.44
1544 2131 2.621526 ACTCCTTCGCGGAAATTTTTGT 59.378 40.909 6.13 0.00 42.53 2.83
1545 2132 3.816523 ACTCCTTCGCGGAAATTTTTGTA 59.183 39.130 6.13 0.00 42.53 2.41
1546 2133 4.149910 TCCTTCGCGGAAATTTTTGTAC 57.850 40.909 6.13 0.00 39.40 2.90
1549 2136 4.319911 CCTTCGCGGAAATTTTTGTACAGA 60.320 41.667 6.13 0.00 33.16 3.41
1550 2137 4.815040 TCGCGGAAATTTTTGTACAGAA 57.185 36.364 6.13 0.00 0.00 3.02
1555 2142 8.332464 TCGCGGAAATTTTTGTACAGAATATAG 58.668 33.333 6.13 0.00 0.00 1.31
1581 2168 9.730420 GCACTAGATCAAGTTTGTTTCTAAAAA 57.270 29.630 0.00 0.00 0.00 1.94
1603 2191 8.791327 AAAAGTTTCAGGATGTTTGACATTTT 57.209 26.923 0.00 0.00 39.27 1.82
1658 2246 0.965363 CAATGGGACCCAAAGACCCG 60.965 60.000 19.58 0.00 45.91 5.28
1711 2545 4.616604 GCAGCTCATTGCATTTGTTACTGA 60.617 41.667 14.67 0.00 45.94 3.41
1712 2546 5.647589 CAGCTCATTGCATTTGTTACTGAT 58.352 37.500 0.00 0.00 45.94 2.90
1713 2547 5.515270 CAGCTCATTGCATTTGTTACTGATG 59.485 40.000 0.00 0.00 45.94 3.07
1714 2548 4.266976 GCTCATTGCATTTGTTACTGATGC 59.733 41.667 13.60 13.60 44.81 3.91
1777 2615 8.912988 ACAACATGAAAGGAGAAAAGAAATGTA 58.087 29.630 0.00 0.00 0.00 2.29
1798 2636 7.388290 TGTATTCAAGACAAAACAAATTCGC 57.612 32.000 0.00 0.00 0.00 4.70
1808 2646 7.591426 AGACAAAACAAATTCGCTTCTTGATAC 59.409 33.333 0.00 0.00 0.00 2.24
1897 3078 5.700402 AAGGAATATGCAACCTACTGAGT 57.300 39.130 0.00 0.00 33.34 3.41
2014 3198 3.120105 CCTCTGATAGACGCGGCA 58.880 61.111 17.71 0.00 0.00 5.69
2057 3241 3.972107 AACACCTTGTTGCATGCAG 57.028 47.368 21.50 11.44 39.45 4.41
2058 3242 1.113788 AACACCTTGTTGCATGCAGT 58.886 45.000 21.50 12.15 39.45 4.40
2059 3243 0.386476 ACACCTTGTTGCATGCAGTG 59.614 50.000 26.50 26.50 0.00 3.66
2060 3244 0.319211 CACCTTGTTGCATGCAGTGG 60.319 55.000 21.50 21.12 0.00 4.00
2061 3245 1.373748 CCTTGTTGCATGCAGTGGC 60.374 57.895 21.50 12.75 41.68 5.01
2062 3246 1.731613 CTTGTTGCATGCAGTGGCG 60.732 57.895 21.50 6.11 45.35 5.69
2063 3247 3.210223 TTGTTGCATGCAGTGGCGG 62.210 57.895 21.50 0.00 45.35 6.13
2064 3248 3.364441 GTTGCATGCAGTGGCGGA 61.364 61.111 21.50 0.37 45.35 5.54
2065 3249 3.057548 TTGCATGCAGTGGCGGAG 61.058 61.111 21.50 0.00 45.35 4.63
2091 3275 1.942776 AAAAAGGATTGAGGGGGCTG 58.057 50.000 0.00 0.00 0.00 4.85
2092 3276 1.084018 AAAAGGATTGAGGGGGCTGA 58.916 50.000 0.00 0.00 0.00 4.26
2093 3277 0.627986 AAAGGATTGAGGGGGCTGAG 59.372 55.000 0.00 0.00 0.00 3.35
2094 3278 0.551131 AAGGATTGAGGGGGCTGAGT 60.551 55.000 0.00 0.00 0.00 3.41
2095 3279 1.225704 GGATTGAGGGGGCTGAGTG 59.774 63.158 0.00 0.00 0.00 3.51
2096 3280 1.452833 GATTGAGGGGGCTGAGTGC 60.453 63.158 0.00 0.00 41.94 4.40
2097 3281 1.919600 GATTGAGGGGGCTGAGTGCT 61.920 60.000 0.00 0.00 42.39 4.40
2098 3282 2.207501 ATTGAGGGGGCTGAGTGCTG 62.208 60.000 0.00 0.00 42.39 4.41
2099 3283 4.792804 GAGGGGGCTGAGTGCTGC 62.793 72.222 0.00 0.00 42.39 5.25
2102 3286 4.025858 GGGGCTGAGTGCTGCTGA 62.026 66.667 0.00 0.00 42.39 4.26
2103 3287 2.033141 GGGCTGAGTGCTGCTGAA 59.967 61.111 0.00 0.00 42.39 3.02
2104 3288 1.601759 GGGCTGAGTGCTGCTGAAA 60.602 57.895 0.00 0.00 42.39 2.69
2105 3289 1.578423 GGCTGAGTGCTGCTGAAAC 59.422 57.895 0.00 0.00 42.39 2.78
2106 3290 1.168407 GGCTGAGTGCTGCTGAAACA 61.168 55.000 0.00 0.00 42.39 2.83
2107 3291 0.237761 GCTGAGTGCTGCTGAAACAG 59.762 55.000 0.00 5.08 40.80 3.16
2108 3292 1.875009 CTGAGTGCTGCTGAAACAGA 58.125 50.000 0.00 0.00 40.25 3.41
2109 3293 2.424557 CTGAGTGCTGCTGAAACAGAT 58.575 47.619 0.00 0.00 40.25 2.90
2110 3294 2.415857 CTGAGTGCTGCTGAAACAGATC 59.584 50.000 0.00 0.00 40.25 2.75
2111 3295 2.224354 TGAGTGCTGCTGAAACAGATCA 60.224 45.455 0.00 0.00 40.25 2.92
2113 3297 1.467734 GTGCTGCTGAAACAGATCAGG 59.532 52.381 0.00 0.00 45.60 3.86
2114 3298 1.093159 GCTGCTGAAACAGATCAGGG 58.907 55.000 6.46 0.00 45.60 4.45
2115 3299 1.339438 GCTGCTGAAACAGATCAGGGA 60.339 52.381 6.46 0.00 45.60 4.20
2116 3300 2.630158 CTGCTGAAACAGATCAGGGAG 58.370 52.381 6.46 0.00 45.60 4.30
2117 3301 1.280133 TGCTGAAACAGATCAGGGAGG 59.720 52.381 6.46 0.00 45.60 4.30
2118 3302 1.407989 GCTGAAACAGATCAGGGAGGG 60.408 57.143 6.46 0.00 45.60 4.30
2119 3303 0.620556 TGAAACAGATCAGGGAGGGC 59.379 55.000 0.00 0.00 0.00 5.19
2120 3304 0.106967 GAAACAGATCAGGGAGGGCC 60.107 60.000 0.00 0.00 0.00 5.80
2121 3305 0.846427 AAACAGATCAGGGAGGGCCA 60.846 55.000 6.18 0.00 35.15 5.36
2122 3306 0.846427 AACAGATCAGGGAGGGCCAA 60.846 55.000 6.18 0.00 35.15 4.52
2123 3307 0.846427 ACAGATCAGGGAGGGCCAAA 60.846 55.000 6.18 0.00 35.15 3.28
2124 3308 0.394899 CAGATCAGGGAGGGCCAAAC 60.395 60.000 6.18 0.00 35.15 2.93
2125 3309 1.076705 GATCAGGGAGGGCCAAACC 60.077 63.158 6.18 4.43 35.15 3.27
2126 3310 1.856873 ATCAGGGAGGGCCAAACCA 60.857 57.895 6.18 0.00 42.05 3.67
2127 3311 1.442886 ATCAGGGAGGGCCAAACCAA 61.443 55.000 6.18 0.00 42.05 3.67
2128 3312 1.152355 CAGGGAGGGCCAAACCAAA 60.152 57.895 6.18 0.00 42.05 3.28
2129 3313 1.156095 AGGGAGGGCCAAACCAAAG 59.844 57.895 6.18 0.00 42.05 2.77
2130 3314 1.155155 GGGAGGGCCAAACCAAAGA 59.845 57.895 6.18 0.00 42.05 2.52
2131 3315 0.471022 GGGAGGGCCAAACCAAAGAA 60.471 55.000 6.18 0.00 42.05 2.52
2132 3316 1.419381 GGAGGGCCAAACCAAAGAAA 58.581 50.000 6.18 0.00 42.05 2.52
2133 3317 1.765904 GGAGGGCCAAACCAAAGAAAA 59.234 47.619 6.18 0.00 42.05 2.29
2134 3318 2.171659 GGAGGGCCAAACCAAAGAAAAA 59.828 45.455 6.18 0.00 42.05 1.94
2153 3337 5.534207 AAAAACATGATCTGAGCACCAAA 57.466 34.783 0.00 0.00 0.00 3.28
2154 3338 5.733620 AAAACATGATCTGAGCACCAAAT 57.266 34.783 0.00 0.00 0.00 2.32
2155 3339 6.839124 AAAACATGATCTGAGCACCAAATA 57.161 33.333 0.00 0.00 0.00 1.40
2156 3340 6.839124 AAACATGATCTGAGCACCAAATAA 57.161 33.333 0.00 0.00 0.00 1.40
2157 3341 7.414222 AAACATGATCTGAGCACCAAATAAT 57.586 32.000 0.00 0.00 0.00 1.28
2158 3342 6.630444 ACATGATCTGAGCACCAAATAATC 57.370 37.500 0.00 0.00 0.00 1.75
2159 3343 6.124340 ACATGATCTGAGCACCAAATAATCA 58.876 36.000 0.00 0.00 0.00 2.57
2160 3344 6.039047 ACATGATCTGAGCACCAAATAATCAC 59.961 38.462 0.00 0.00 0.00 3.06
2161 3345 5.748402 TGATCTGAGCACCAAATAATCACT 58.252 37.500 0.00 0.00 0.00 3.41
2162 3346 6.888105 TGATCTGAGCACCAAATAATCACTA 58.112 36.000 0.00 0.00 0.00 2.74
2163 3347 7.337938 TGATCTGAGCACCAAATAATCACTAA 58.662 34.615 0.00 0.00 0.00 2.24
2164 3348 7.828717 TGATCTGAGCACCAAATAATCACTAAA 59.171 33.333 0.00 0.00 0.00 1.85
2165 3349 8.757982 ATCTGAGCACCAAATAATCACTAAAT 57.242 30.769 0.00 0.00 0.00 1.40
2166 3350 8.579850 TCTGAGCACCAAATAATCACTAAATT 57.420 30.769 0.00 0.00 0.00 1.82
2167 3351 9.023962 TCTGAGCACCAAATAATCACTAAATTT 57.976 29.630 0.00 0.00 0.00 1.82
2172 3356 9.855021 GCACCAAATAATCACTAAATTTACAGT 57.145 29.630 0.00 0.00 0.00 3.55
2180 3364 8.565896 AATCACTAAATTTACAGTCTGCATCA 57.434 30.769 0.00 0.00 0.00 3.07
2181 3365 7.601073 TCACTAAATTTACAGTCTGCATCAG 57.399 36.000 0.00 0.00 0.00 2.90
2182 3366 6.092670 TCACTAAATTTACAGTCTGCATCAGC 59.907 38.462 0.00 0.00 42.57 4.26
2199 3383 7.941795 GCATCAGCAAATTAGCAATAAATCT 57.058 32.000 0.00 0.00 41.58 2.40
2200 3384 8.004585 GCATCAGCAAATTAGCAATAAATCTC 57.995 34.615 0.00 0.00 41.58 2.75
2201 3385 7.650504 GCATCAGCAAATTAGCAATAAATCTCA 59.349 33.333 0.00 0.00 41.58 3.27
2202 3386 9.181805 CATCAGCAAATTAGCAATAAATCTCAG 57.818 33.333 0.00 0.00 36.85 3.35
2203 3387 8.510243 TCAGCAAATTAGCAATAAATCTCAGA 57.490 30.769 0.00 0.00 36.85 3.27
2204 3388 9.128404 TCAGCAAATTAGCAATAAATCTCAGAT 57.872 29.630 0.00 0.00 36.85 2.90
2205 3389 9.181805 CAGCAAATTAGCAATAAATCTCAGATG 57.818 33.333 0.00 0.00 36.85 2.90
2206 3390 8.910944 AGCAAATTAGCAATAAATCTCAGATGT 58.089 29.630 0.00 0.00 36.85 3.06
2207 3391 9.525409 GCAAATTAGCAATAAATCTCAGATGTT 57.475 29.630 0.00 0.00 0.00 2.71
2211 3395 8.908786 TTAGCAATAAATCTCAGATGTTAGGG 57.091 34.615 0.00 0.00 0.00 3.53
2212 3396 6.302269 AGCAATAAATCTCAGATGTTAGGGG 58.698 40.000 0.00 0.00 0.00 4.79
2213 3397 5.474876 GCAATAAATCTCAGATGTTAGGGGG 59.525 44.000 0.00 0.00 0.00 5.40
2238 3422 3.721706 CCTGCTGGTCCCCCTGTC 61.722 72.222 0.51 0.00 32.49 3.51
2239 3423 2.608988 CTGCTGGTCCCCCTGTCT 60.609 66.667 0.00 0.00 32.49 3.41
2240 3424 2.607750 TGCTGGTCCCCCTGTCTC 60.608 66.667 0.00 0.00 32.49 3.36
2241 3425 3.403558 GCTGGTCCCCCTGTCTCC 61.404 72.222 0.00 0.00 32.49 3.71
2242 3426 3.077556 CTGGTCCCCCTGTCTCCG 61.078 72.222 0.00 0.00 0.00 4.63
2248 3432 4.087892 CCCCTGTCTCCGCCACTG 62.088 72.222 0.00 0.00 0.00 3.66
2327 3511 3.894759 AGCACTGATATCAACTGCCATT 58.105 40.909 22.74 9.25 32.72 3.16
2340 3524 1.361271 GCCATTGACGCCATCCATG 59.639 57.895 0.00 0.00 31.53 3.66
2395 3579 2.750948 AGTGTGTGTGCTACTAAACGG 58.249 47.619 0.00 0.00 0.00 4.44
2419 3603 1.873591 GCCTGACAACGACTTCAACAT 59.126 47.619 0.00 0.00 0.00 2.71
2444 3628 1.940613 GTGAAGAACTTGGTCACGCTT 59.059 47.619 0.00 0.00 32.98 4.68
2505 3689 1.805120 CGGGGTCATTTTACGAGCGAT 60.805 52.381 0.00 0.00 0.00 4.58
2612 3796 7.639113 TCCAATTGAATTAGTTGTGGGTATC 57.361 36.000 7.12 0.00 0.00 2.24
2649 3838 3.138468 ACCTTTACAGGCTCCTGAAGTTT 59.862 43.478 21.75 2.34 45.56 2.66
2669 3858 2.483014 TAACAAGGAACCACATCCCG 57.517 50.000 0.00 0.00 40.59 5.14
2674 3863 2.436542 CAAGGAACCACATCCCGGTATA 59.563 50.000 0.00 0.00 40.59 1.47
2856 4045 4.081752 ACGCAATTGCCTCCAAATTCATTA 60.082 37.500 24.24 0.00 37.91 1.90
3121 4324 0.249398 GGTGCACGACCCTAGAACAT 59.751 55.000 11.45 0.00 39.10 2.71
3263 4472 3.648067 CTGTATTGGAGCCTAGATGGGAA 59.352 47.826 0.00 0.00 36.00 3.97
3303 4512 4.499865 GCCAGAACATCTCGAACTATGCTA 60.500 45.833 2.81 0.00 0.00 3.49
3360 4579 3.019564 AGGTGCCTGAAGATACATTTGC 58.980 45.455 0.00 0.00 0.00 3.68
3417 4636 1.065053 TGTGCCCACTTAGTTGTGTGT 60.065 47.619 0.00 0.00 36.30 3.72
3418 4637 1.333619 GTGCCCACTTAGTTGTGTGTG 59.666 52.381 0.00 0.00 36.30 3.82
3419 4638 1.065053 TGCCCACTTAGTTGTGTGTGT 60.065 47.619 0.00 0.00 36.30 3.72
3420 4639 2.021457 GCCCACTTAGTTGTGTGTGTT 58.979 47.619 0.00 0.00 36.30 3.32
3421 4640 3.207778 GCCCACTTAGTTGTGTGTGTTA 58.792 45.455 0.00 0.00 36.30 2.41
3422 4641 3.250040 GCCCACTTAGTTGTGTGTGTTAG 59.750 47.826 0.00 0.00 36.30 2.34
3423 4642 3.813166 CCCACTTAGTTGTGTGTGTTAGG 59.187 47.826 0.00 0.00 36.30 2.69
3424 4643 4.443739 CCCACTTAGTTGTGTGTGTTAGGA 60.444 45.833 0.00 0.00 36.30 2.94
3425 4644 5.120399 CCACTTAGTTGTGTGTGTTAGGAA 58.880 41.667 0.00 0.00 36.30 3.36
3426 4645 5.587043 CCACTTAGTTGTGTGTGTTAGGAAA 59.413 40.000 0.00 0.00 36.30 3.13
3427 4646 6.262273 CCACTTAGTTGTGTGTGTTAGGAAAT 59.738 38.462 0.00 0.00 36.30 2.17
3428 4647 7.442969 CCACTTAGTTGTGTGTGTTAGGAAATA 59.557 37.037 0.00 0.00 36.30 1.40
3429 4648 8.999431 CACTTAGTTGTGTGTGTTAGGAAATAT 58.001 33.333 0.00 0.00 33.61 1.28
3430 4649 8.999431 ACTTAGTTGTGTGTGTTAGGAAATATG 58.001 33.333 0.00 0.00 0.00 1.78
3431 4650 6.254281 AGTTGTGTGTGTTAGGAAATATGC 57.746 37.500 0.00 0.00 0.00 3.14
3432 4651 5.767665 AGTTGTGTGTGTTAGGAAATATGCA 59.232 36.000 0.00 0.00 0.00 3.96
3433 4652 6.264292 AGTTGTGTGTGTTAGGAAATATGCAA 59.736 34.615 0.00 0.00 0.00 4.08
3434 4653 6.007936 TGTGTGTGTTAGGAAATATGCAAC 57.992 37.500 0.00 0.00 0.00 4.17
3435 4654 5.767665 TGTGTGTGTTAGGAAATATGCAACT 59.232 36.000 0.00 0.00 0.00 3.16
3436 4655 6.264292 TGTGTGTGTTAGGAAATATGCAACTT 59.736 34.615 0.00 0.00 0.00 2.66
3437 4656 6.582295 GTGTGTGTTAGGAAATATGCAACTTG 59.418 38.462 0.00 0.00 0.00 3.16
3438 4657 6.264292 TGTGTGTTAGGAAATATGCAACTTGT 59.736 34.615 0.00 0.00 0.00 3.16
3439 4658 7.445707 TGTGTGTTAGGAAATATGCAACTTGTA 59.554 33.333 0.00 0.00 0.00 2.41
3440 4659 8.458843 GTGTGTTAGGAAATATGCAACTTGTAT 58.541 33.333 0.00 0.00 0.00 2.29
3441 4660 9.019656 TGTGTTAGGAAATATGCAACTTGTATT 57.980 29.630 0.00 0.00 0.00 1.89
3442 4661 9.855021 GTGTTAGGAAATATGCAACTTGTATTT 57.145 29.630 0.00 0.00 32.39 1.40
3447 4666 7.992180 GAAATATGCAACTTGTATTTCCAGG 57.008 36.000 14.68 0.00 38.19 4.45
3448 4667 7.716799 AAATATGCAACTTGTATTTCCAGGA 57.283 32.000 0.00 0.00 0.00 3.86
3449 4668 7.716799 AATATGCAACTTGTATTTCCAGGAA 57.283 32.000 0.00 0.00 0.00 3.36
3450 4669 5.649782 ATGCAACTTGTATTTCCAGGAAG 57.350 39.130 1.07 0.00 0.00 3.46
3451 4670 3.255642 TGCAACTTGTATTTCCAGGAAGC 59.744 43.478 1.07 0.00 0.00 3.86
3452 4671 3.367395 GCAACTTGTATTTCCAGGAAGCC 60.367 47.826 1.07 0.00 0.00 4.35
3453 4672 3.806949 ACTTGTATTTCCAGGAAGCCA 57.193 42.857 1.07 0.00 0.00 4.75
3454 4673 4.322057 ACTTGTATTTCCAGGAAGCCAT 57.678 40.909 1.07 0.00 0.00 4.40
3455 4674 5.450818 ACTTGTATTTCCAGGAAGCCATA 57.549 39.130 1.07 0.00 0.00 2.74
3456 4675 5.440610 ACTTGTATTTCCAGGAAGCCATAG 58.559 41.667 1.07 2.09 0.00 2.23
3457 4676 4.437682 TGTATTTCCAGGAAGCCATAGG 57.562 45.455 1.07 0.00 0.00 2.57
3469 4688 2.122783 GCCATAGGCCAGTACAAACA 57.877 50.000 5.01 0.00 44.06 2.83
3470 4689 1.743394 GCCATAGGCCAGTACAAACAC 59.257 52.381 5.01 0.00 44.06 3.32
3471 4690 2.878117 GCCATAGGCCAGTACAAACACA 60.878 50.000 5.01 0.00 44.06 3.72
3472 4691 2.747446 CCATAGGCCAGTACAAACACAC 59.253 50.000 5.01 0.00 0.00 3.82
3514 4737 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3516 4739 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3521 4744 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3522 4745 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
3523 4746 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
3528 4751 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
3575 4798 2.154462 CACAACCTAAACTGCCTGAGG 58.846 52.381 0.00 0.00 35.05 3.86
3638 4863 0.889186 ATCTTCGCAACCGTGGCTTT 60.889 50.000 0.00 0.00 35.54 3.51
3738 4964 5.522460 CGGTTTTAAATAGGAATCTCGCTCA 59.478 40.000 0.00 0.00 0.00 4.26
3742 4968 8.612619 GTTTTAAATAGGAATCTCGCTCATTGA 58.387 33.333 0.00 0.00 0.00 2.57
3830 5057 2.303022 CCTGAACTTCTCCCAGTGCTAA 59.697 50.000 0.00 0.00 0.00 3.09
3894 5121 3.679389 ACTGTTGGAAAGCTATGGACAG 58.321 45.455 12.73 12.73 39.04 3.51
3960 5187 6.129457 CGGTTTAAGAGCAGTTTTGAAAATCG 60.129 38.462 0.00 0.00 0.00 3.34
4205 5437 4.441913 CGGCTAATCCAATTGAGGCAAATT 60.442 41.667 7.12 0.13 34.30 1.82
4240 5472 3.971032 AGCTTATGAAAATGCGCTACC 57.029 42.857 9.73 0.00 0.00 3.18
4245 5477 6.094881 AGCTTATGAAAATGCGCTACCTTTTA 59.905 34.615 9.73 0.10 0.00 1.52
4258 5490 7.115663 TGCGCTACCTTTTAATGTTGAATTTTC 59.884 33.333 9.73 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 82 6.484364 AAAAATGATTCAGTGGTGAAGGTT 57.516 33.333 0.00 0.00 45.96 3.50
253 308 5.893897 ATTTCTGGATTTCTTGAGCTCAC 57.106 39.130 18.03 3.24 0.00 3.51
281 336 2.305635 TGAAGCTGCAGGATCCTTTGTA 59.694 45.455 13.00 1.02 0.00 2.41
282 337 1.074405 TGAAGCTGCAGGATCCTTTGT 59.926 47.619 13.00 0.00 0.00 2.83
283 338 1.830279 TGAAGCTGCAGGATCCTTTG 58.170 50.000 13.00 3.72 0.00 2.77
284 339 2.224967 ACTTGAAGCTGCAGGATCCTTT 60.225 45.455 13.00 2.91 0.00 3.11
354 420 3.195396 GGTTGCAGGATTTGGATTTGCTA 59.805 43.478 0.00 0.00 35.85 3.49
359 425 4.677182 AGTTAGGTTGCAGGATTTGGATT 58.323 39.130 0.00 0.00 0.00 3.01
390 456 1.165270 GTTCAGCGGCATTGTAGGTT 58.835 50.000 1.45 0.00 0.00 3.50
444 513 2.409651 CGACTAGGAGGCAGACGC 59.590 66.667 0.00 0.00 37.44 5.19
450 519 2.325666 GACGAGTGCGACTAGGAGGC 62.326 65.000 0.00 0.00 41.64 4.70
519 593 3.325230 GCATTTCTGGCGATTCTGTAC 57.675 47.619 0.00 0.00 0.00 2.90
575 659 4.074526 TCGACTCCAGCAGGCAGC 62.075 66.667 0.00 0.00 46.19 5.25
576 660 2.125753 GTCGACTCCAGCAGGCAG 60.126 66.667 8.70 0.00 33.74 4.85
577 661 4.056125 CGTCGACTCCAGCAGGCA 62.056 66.667 14.70 0.00 33.74 4.75
578 662 3.973267 GACGTCGACTCCAGCAGGC 62.973 68.421 14.70 0.00 33.74 4.85
668 776 0.804989 GAGGCCTTGTTTCATCACCG 59.195 55.000 6.77 0.00 0.00 4.94
672 832 4.166187 GAAACAGAGGCCTTGTTTCATC 57.834 45.455 36.75 25.42 46.10 2.92
684 844 2.221055 CGTCCGTTTTCTGAAACAGAGG 59.779 50.000 1.58 4.50 44.25 3.69
689 849 0.990295 GCGCGTCCGTTTTCTGAAAC 60.990 55.000 8.43 0.00 41.35 2.78
693 853 3.698463 ACGCGCGTCCGTTTTCTG 61.698 61.111 32.73 0.00 38.47 3.02
740 900 1.725164 CGTCGGATCGTCTATGATCGA 59.275 52.381 6.18 0.00 44.61 3.59
747 907 1.838568 CGCATCCGTCGGATCGTCTA 61.839 60.000 24.03 0.00 40.98 2.59
786 946 4.651008 TCACCCGACCGACAACGC 62.651 66.667 0.00 0.00 38.29 4.84
824 984 8.469200 CCTAAATCTGGCAATGATGTCTAAAAA 58.531 33.333 0.00 0.00 30.51 1.94
825 985 7.615365 ACCTAAATCTGGCAATGATGTCTAAAA 59.385 33.333 0.00 0.00 30.51 1.52
826 986 7.067372 CACCTAAATCTGGCAATGATGTCTAAA 59.933 37.037 0.00 0.00 30.51 1.85
827 987 6.543465 CACCTAAATCTGGCAATGATGTCTAA 59.457 38.462 0.00 0.00 30.51 2.10
828 988 6.057533 CACCTAAATCTGGCAATGATGTCTA 58.942 40.000 0.00 0.00 30.51 2.59
829 989 4.885907 CACCTAAATCTGGCAATGATGTCT 59.114 41.667 0.00 0.00 30.51 3.41
830 990 4.498682 GCACCTAAATCTGGCAATGATGTC 60.499 45.833 0.00 0.00 0.00 3.06
831 991 3.382546 GCACCTAAATCTGGCAATGATGT 59.617 43.478 0.00 0.00 0.00 3.06
832 992 3.382227 TGCACCTAAATCTGGCAATGATG 59.618 43.478 0.00 0.00 0.00 3.07
833 993 3.634504 TGCACCTAAATCTGGCAATGAT 58.365 40.909 0.00 0.00 0.00 2.45
863 1023 4.557554 CACTGGTGTGGTGCTGAA 57.442 55.556 0.00 0.00 40.33 3.02
873 1033 2.079158 CATTCACTGTAGCCACTGGTG 58.921 52.381 0.00 3.57 33.52 4.17
886 1046 4.453480 TTTTTCTCTGGGACCATTCACT 57.547 40.909 0.00 0.00 0.00 3.41
972 1438 0.905357 TTGGAGGAAGCTAGGCTGAC 59.095 55.000 0.00 0.00 39.62 3.51
1042 1514 2.034558 AGTTGCGTGCATAGCTTGTTTT 59.965 40.909 16.27 0.00 35.28 2.43
1091 1563 5.049818 CAGAATCACCCAATTAATCGAGAGC 60.050 44.000 0.00 0.00 0.00 4.09
1159 1639 0.978146 AGGGTTGCTCTATCGGCTGT 60.978 55.000 0.00 0.00 0.00 4.40
1160 1640 1.000283 CTAGGGTTGCTCTATCGGCTG 60.000 57.143 0.00 0.00 0.00 4.85
1161 1641 1.133450 TCTAGGGTTGCTCTATCGGCT 60.133 52.381 0.00 0.00 0.00 5.52
1163 1643 5.010933 TCTTATCTAGGGTTGCTCTATCGG 58.989 45.833 0.00 0.00 0.00 4.18
1164 1644 6.576662 TTCTTATCTAGGGTTGCTCTATCG 57.423 41.667 0.00 0.00 0.00 2.92
1165 1645 8.589338 TGATTTCTTATCTAGGGTTGCTCTATC 58.411 37.037 0.00 0.00 0.00 2.08
1167 1647 7.914427 TGATTTCTTATCTAGGGTTGCTCTA 57.086 36.000 0.00 0.00 0.00 2.43
1191 1767 2.784347 GGCTGTAGCTTGTTCTCCTTT 58.216 47.619 3.63 0.00 41.70 3.11
1193 1769 0.247736 CGGCTGTAGCTTGTTCTCCT 59.752 55.000 3.63 0.00 41.70 3.69
1195 1771 2.301577 ATCGGCTGTAGCTTGTTCTC 57.698 50.000 3.63 0.00 41.70 2.87
1197 1773 3.376540 CTCTATCGGCTGTAGCTTGTTC 58.623 50.000 3.63 0.00 41.70 3.18
1200 1776 1.067669 TGCTCTATCGGCTGTAGCTTG 59.932 52.381 3.63 0.00 41.70 4.01
1203 1779 1.492720 GTTGCTCTATCGGCTGTAGC 58.507 55.000 0.00 0.00 41.14 3.58
1204 1780 1.269831 GGGTTGCTCTATCGGCTGTAG 60.270 57.143 0.00 0.00 0.00 2.74
1205 1781 0.750850 GGGTTGCTCTATCGGCTGTA 59.249 55.000 0.00 0.00 0.00 2.74
1207 1783 1.000283 CTAGGGTTGCTCTATCGGCTG 60.000 57.143 0.00 0.00 0.00 4.85
1222 1798 4.777896 TCCATCCCGATTTCTTATCTAGGG 59.222 45.833 0.00 0.00 38.73 3.53
1361 1937 6.942576 ACACTATAGCATTCTTGTTTCCAAGT 59.057 34.615 0.00 0.00 46.70 3.16
1397 1973 3.788694 TCATTTGTTCGCACAACTTTTCG 59.211 39.130 0.00 0.00 42.87 3.46
1406 1982 3.236816 CATGGAACTCATTTGTTCGCAC 58.763 45.455 0.00 0.00 45.11 5.34
1507 2094 1.336980 GGAGTGACTTCCGTGGACTTC 60.337 57.143 0.00 0.00 0.00 3.01
1508 2095 0.680061 GGAGTGACTTCCGTGGACTT 59.320 55.000 0.00 0.00 0.00 3.01
1531 2118 7.913297 TGCTATATTCTGTACAAAAATTTCCGC 59.087 33.333 8.08 7.74 0.00 5.54
1542 2129 9.355916 ACTTGATCTAGTGCTATATTCTGTACA 57.644 33.333 9.11 0.00 0.00 2.90
1545 2132 9.539825 CAAACTTGATCTAGTGCTATATTCTGT 57.460 33.333 10.65 0.00 0.00 3.41
1546 2133 9.539825 ACAAACTTGATCTAGTGCTATATTCTG 57.460 33.333 10.65 1.40 0.00 3.02
1555 2142 9.730420 TTTTTAGAAACAAACTTGATCTAGTGC 57.270 29.630 10.65 0.00 34.38 4.40
1576 2163 9.883142 AAATGTCAAACATCCTGAAACTTTTTA 57.117 25.926 0.00 0.00 37.97 1.52
1618 2206 7.223971 CCATTGCACCTGATTTGAAAATGATAG 59.776 37.037 0.00 0.00 0.00 2.08
1619 2207 7.042950 CCATTGCACCTGATTTGAAAATGATA 58.957 34.615 0.00 0.00 0.00 2.15
1622 2210 4.393680 CCCATTGCACCTGATTTGAAAATG 59.606 41.667 0.00 0.00 0.00 2.32
1658 2246 7.773690 AGGATACATACAACAGAAATACCCAAC 59.226 37.037 0.00 0.00 41.41 3.77
1670 2258 5.009631 AGCTGCAAAAGGATACATACAACA 58.990 37.500 1.02 0.00 41.41 3.33
1711 2545 4.625083 GCAGAGAGGGAAAGAGTTTAGCAT 60.625 45.833 0.00 0.00 0.00 3.79
1712 2546 3.307059 GCAGAGAGGGAAAGAGTTTAGCA 60.307 47.826 0.00 0.00 0.00 3.49
1713 2547 3.266636 GCAGAGAGGGAAAGAGTTTAGC 58.733 50.000 0.00 0.00 0.00 3.09
1714 2548 4.543590 TGCAGAGAGGGAAAGAGTTTAG 57.456 45.455 0.00 0.00 0.00 1.85
1777 2615 6.980397 AGAAGCGAATTTGTTTTGTCTTGAAT 59.020 30.769 0.00 0.00 0.00 2.57
1798 2636 8.976471 CATCAGCACATAAGTAGTATCAAGAAG 58.024 37.037 0.00 0.00 0.00 2.85
1808 2646 8.194104 ACTTACTCTTCATCAGCACATAAGTAG 58.806 37.037 0.00 0.00 30.60 2.57
2014 3198 4.074259 TGTTGCTGCATAAGTCAGTGATT 58.926 39.130 1.84 0.00 34.21 2.57
2055 3239 1.172180 TTTTTCTGCCTCCGCCACTG 61.172 55.000 0.00 0.00 0.00 3.66
2056 3240 1.150536 TTTTTCTGCCTCCGCCACT 59.849 52.632 0.00 0.00 0.00 4.00
2057 3241 3.758172 TTTTTCTGCCTCCGCCAC 58.242 55.556 0.00 0.00 0.00 5.01
2072 3256 1.432807 TCAGCCCCCTCAATCCTTTTT 59.567 47.619 0.00 0.00 0.00 1.94
2073 3257 1.006400 CTCAGCCCCCTCAATCCTTTT 59.994 52.381 0.00 0.00 0.00 2.27
2074 3258 0.627986 CTCAGCCCCCTCAATCCTTT 59.372 55.000 0.00 0.00 0.00 3.11
2075 3259 0.551131 ACTCAGCCCCCTCAATCCTT 60.551 55.000 0.00 0.00 0.00 3.36
2076 3260 1.083706 ACTCAGCCCCCTCAATCCT 59.916 57.895 0.00 0.00 0.00 3.24
2077 3261 1.225704 CACTCAGCCCCCTCAATCC 59.774 63.158 0.00 0.00 0.00 3.01
2078 3262 1.452833 GCACTCAGCCCCCTCAATC 60.453 63.158 0.00 0.00 37.23 2.67
2079 3263 2.679716 GCACTCAGCCCCCTCAAT 59.320 61.111 0.00 0.00 37.23 2.57
2088 3272 0.237761 CTGTTTCAGCAGCACTCAGC 59.762 55.000 0.00 0.00 46.19 4.26
2089 3273 1.875009 TCTGTTTCAGCAGCACTCAG 58.125 50.000 0.00 0.00 36.49 3.35
2090 3274 2.224354 TGATCTGTTTCAGCAGCACTCA 60.224 45.455 0.00 0.00 36.49 3.41
2091 3275 2.415857 CTGATCTGTTTCAGCAGCACTC 59.584 50.000 0.00 0.00 36.96 3.51
2092 3276 2.424557 CTGATCTGTTTCAGCAGCACT 58.575 47.619 0.00 0.00 36.96 4.40
2093 3277 1.467734 CCTGATCTGTTTCAGCAGCAC 59.532 52.381 0.00 0.00 41.50 4.40
2094 3278 1.612462 CCCTGATCTGTTTCAGCAGCA 60.612 52.381 0.00 0.00 41.50 4.41
2095 3279 1.093159 CCCTGATCTGTTTCAGCAGC 58.907 55.000 0.00 0.00 41.50 5.25
2096 3280 2.630158 CTCCCTGATCTGTTTCAGCAG 58.370 52.381 0.00 0.00 41.50 4.24
2097 3281 1.280133 CCTCCCTGATCTGTTTCAGCA 59.720 52.381 0.00 0.00 41.50 4.41
2098 3282 1.407989 CCCTCCCTGATCTGTTTCAGC 60.408 57.143 0.00 0.00 41.50 4.26
2099 3283 1.407989 GCCCTCCCTGATCTGTTTCAG 60.408 57.143 0.00 0.00 42.31 3.02
2100 3284 0.620556 GCCCTCCCTGATCTGTTTCA 59.379 55.000 0.00 0.00 0.00 2.69
2101 3285 0.106967 GGCCCTCCCTGATCTGTTTC 60.107 60.000 0.00 0.00 0.00 2.78
2102 3286 0.846427 TGGCCCTCCCTGATCTGTTT 60.846 55.000 0.00 0.00 0.00 2.83
2103 3287 0.846427 TTGGCCCTCCCTGATCTGTT 60.846 55.000 0.00 0.00 0.00 3.16
2104 3288 0.846427 TTTGGCCCTCCCTGATCTGT 60.846 55.000 0.00 0.00 0.00 3.41
2105 3289 0.394899 GTTTGGCCCTCCCTGATCTG 60.395 60.000 0.00 0.00 0.00 2.90
2106 3290 1.575447 GGTTTGGCCCTCCCTGATCT 61.575 60.000 0.00 0.00 0.00 2.75
2107 3291 1.076705 GGTTTGGCCCTCCCTGATC 60.077 63.158 0.00 0.00 0.00 2.92
2108 3292 1.442886 TTGGTTTGGCCCTCCCTGAT 61.443 55.000 0.00 0.00 36.04 2.90
2109 3293 1.660019 TTTGGTTTGGCCCTCCCTGA 61.660 55.000 0.00 0.00 36.04 3.86
2110 3294 1.152355 TTTGGTTTGGCCCTCCCTG 60.152 57.895 0.00 0.00 36.04 4.45
2111 3295 1.156095 CTTTGGTTTGGCCCTCCCT 59.844 57.895 0.00 0.00 36.04 4.20
2112 3296 0.471022 TTCTTTGGTTTGGCCCTCCC 60.471 55.000 0.00 0.00 36.04 4.30
2113 3297 1.419381 TTTCTTTGGTTTGGCCCTCC 58.581 50.000 0.00 0.00 36.04 4.30
2114 3298 3.552132 TTTTTCTTTGGTTTGGCCCTC 57.448 42.857 0.00 0.00 36.04 4.30
2131 3315 5.534207 TTTGGTGCTCAGATCATGTTTTT 57.466 34.783 0.00 0.00 0.00 1.94
2132 3316 5.733620 ATTTGGTGCTCAGATCATGTTTT 57.266 34.783 0.00 0.00 0.00 2.43
2133 3317 6.839124 TTATTTGGTGCTCAGATCATGTTT 57.161 33.333 0.00 0.00 0.00 2.83
2134 3318 6.604396 TGATTATTTGGTGCTCAGATCATGTT 59.396 34.615 0.00 0.00 0.00 2.71
2135 3319 6.039047 GTGATTATTTGGTGCTCAGATCATGT 59.961 38.462 0.00 0.00 0.00 3.21
2136 3320 6.262496 AGTGATTATTTGGTGCTCAGATCATG 59.738 38.462 0.00 0.00 0.00 3.07
2137 3321 6.363065 AGTGATTATTTGGTGCTCAGATCAT 58.637 36.000 0.00 0.00 0.00 2.45
2138 3322 5.748402 AGTGATTATTTGGTGCTCAGATCA 58.252 37.500 0.00 0.00 0.00 2.92
2139 3323 7.792374 TTAGTGATTATTTGGTGCTCAGATC 57.208 36.000 0.00 0.00 0.00 2.75
2140 3324 8.757982 ATTTAGTGATTATTTGGTGCTCAGAT 57.242 30.769 0.00 0.00 0.00 2.90
2141 3325 8.579850 AATTTAGTGATTATTTGGTGCTCAGA 57.420 30.769 0.00 0.00 0.00 3.27
2146 3330 9.855021 ACTGTAAATTTAGTGATTATTTGGTGC 57.145 29.630 0.00 0.00 0.00 5.01
2154 3338 9.665719 TGATGCAGACTGTAAATTTAGTGATTA 57.334 29.630 3.99 0.00 0.00 1.75
2155 3339 8.565896 TGATGCAGACTGTAAATTTAGTGATT 57.434 30.769 3.99 0.00 0.00 2.57
2156 3340 7.201679 GCTGATGCAGACTGTAAATTTAGTGAT 60.202 37.037 3.99 0.00 39.41 3.06
2157 3341 6.092670 GCTGATGCAGACTGTAAATTTAGTGA 59.907 38.462 3.99 0.00 39.41 3.41
2158 3342 6.128200 TGCTGATGCAGACTGTAAATTTAGTG 60.128 38.462 3.99 0.00 45.31 2.74
2159 3343 5.939883 TGCTGATGCAGACTGTAAATTTAGT 59.060 36.000 3.99 0.00 45.31 2.24
2160 3344 6.426980 TGCTGATGCAGACTGTAAATTTAG 57.573 37.500 3.99 0.00 45.31 1.85
2175 3359 7.650504 TGAGATTTATTGCTAATTTGCTGATGC 59.349 33.333 12.99 0.00 40.20 3.91
2176 3360 9.181805 CTGAGATTTATTGCTAATTTGCTGATG 57.818 33.333 12.99 0.00 0.00 3.07
2177 3361 9.128404 TCTGAGATTTATTGCTAATTTGCTGAT 57.872 29.630 12.99 9.31 0.00 2.90
2178 3362 8.510243 TCTGAGATTTATTGCTAATTTGCTGA 57.490 30.769 12.99 2.66 0.00 4.26
2179 3363 9.181805 CATCTGAGATTTATTGCTAATTTGCTG 57.818 33.333 12.99 0.00 0.00 4.41
2180 3364 8.910944 ACATCTGAGATTTATTGCTAATTTGCT 58.089 29.630 12.99 0.00 0.00 3.91
2181 3365 9.525409 AACATCTGAGATTTATTGCTAATTTGC 57.475 29.630 4.83 4.83 0.00 3.68
2185 3369 9.512588 CCCTAACATCTGAGATTTATTGCTAAT 57.487 33.333 0.00 0.00 0.00 1.73
2186 3370 7.939039 CCCCTAACATCTGAGATTTATTGCTAA 59.061 37.037 0.00 0.00 0.00 3.09
2187 3371 7.453393 CCCCTAACATCTGAGATTTATTGCTA 58.547 38.462 0.00 0.00 0.00 3.49
2188 3372 6.302269 CCCCTAACATCTGAGATTTATTGCT 58.698 40.000 0.00 0.00 0.00 3.91
2189 3373 5.474876 CCCCCTAACATCTGAGATTTATTGC 59.525 44.000 0.00 0.00 0.00 3.56
2236 3420 3.050275 GCAACCAGTGGCGGAGAC 61.050 66.667 9.78 0.00 0.00 3.36
2237 3421 2.894257 ATGCAACCAGTGGCGGAGA 61.894 57.895 9.78 0.00 0.00 3.71
2238 3422 2.360350 ATGCAACCAGTGGCGGAG 60.360 61.111 9.78 0.00 0.00 4.63
2239 3423 2.672651 CATGCAACCAGTGGCGGA 60.673 61.111 9.78 1.84 0.00 5.54
2240 3424 3.751246 CCATGCAACCAGTGGCGG 61.751 66.667 9.78 2.19 0.00 6.13
2241 3425 1.804396 TTTCCATGCAACCAGTGGCG 61.804 55.000 9.78 1.26 33.01 5.69
2242 3426 0.037975 CTTTCCATGCAACCAGTGGC 60.038 55.000 9.78 0.00 33.01 5.01
2243 3427 1.619654 TCTTTCCATGCAACCAGTGG 58.380 50.000 7.91 7.91 0.00 4.00
2244 3428 2.821378 TCATCTTTCCATGCAACCAGTG 59.179 45.455 0.00 0.00 0.00 3.66
2245 3429 3.159213 TCATCTTTCCATGCAACCAGT 57.841 42.857 0.00 0.00 0.00 4.00
2246 3430 3.697542 TCATCATCTTTCCATGCAACCAG 59.302 43.478 0.00 0.00 0.00 4.00
2247 3431 3.699413 TCATCATCTTTCCATGCAACCA 58.301 40.909 0.00 0.00 0.00 3.67
2248 3432 4.556104 CGATCATCATCTTTCCATGCAACC 60.556 45.833 0.00 0.00 0.00 3.77
2342 3526 5.308497 TGGTTGGTTTATCTGAAGGTAGTGA 59.692 40.000 0.00 0.00 0.00 3.41
2347 3531 3.139397 TGGTGGTTGGTTTATCTGAAGGT 59.861 43.478 0.00 0.00 0.00 3.50
2395 3579 0.235926 GAAGTCGTTGTCAGGCAAGC 59.764 55.000 0.00 0.00 37.83 4.01
2419 3603 1.562008 TGACCAAGTTCTTCACCACCA 59.438 47.619 0.00 0.00 0.00 4.17
2431 3615 0.179094 TTGACGAAGCGTGACCAAGT 60.179 50.000 0.00 0.00 41.37 3.16
2444 3628 5.297547 ACAATAGTCTTCTTGCTTTGACGA 58.702 37.500 0.00 0.00 34.92 4.20
2505 3689 3.133901 TGCAAGGAGTCACTAGTGAACAA 59.866 43.478 26.74 2.17 41.85 2.83
2649 3838 2.553466 CCGGGATGTGGTTCCTTGTTAA 60.553 50.000 0.00 0.00 35.97 2.01
2669 3858 4.317839 GCGTGTTCATCAATGTCGTATACC 60.318 45.833 0.00 0.00 0.00 2.73
2674 3863 1.795768 AGCGTGTTCATCAATGTCGT 58.204 45.000 0.00 0.00 0.00 4.34
2712 3901 1.144057 CATAGGCCTCACGGACCAC 59.856 63.158 9.68 0.00 40.21 4.16
2826 4015 1.810151 GGAGGCAATTGCGTTAGAACA 59.190 47.619 25.04 0.00 43.26 3.18
2856 4045 3.288092 GAGCTACAATTCCCGGGAAAAT 58.712 45.455 38.52 26.97 37.69 1.82
3121 4324 1.275666 CTCAGGGTGGTGGTCATGTA 58.724 55.000 0.00 0.00 0.00 2.29
3263 4472 1.963338 GCACGCTCCTCTTGCAAGT 60.963 57.895 25.19 2.73 39.49 3.16
3303 4512 0.179000 CCTTTGCGAGGGATACAGCT 59.821 55.000 0.00 0.00 42.26 4.24
3360 4579 7.915923 TCAAAGTAAGCAATAGTACGATCTCAG 59.084 37.037 0.00 0.00 0.00 3.35
3423 4642 7.771183 TCCTGGAAATACAAGTTGCATATTTC 58.229 34.615 20.48 20.48 41.48 2.17
3424 4643 7.716799 TCCTGGAAATACAAGTTGCATATTT 57.283 32.000 1.81 6.95 32.50 1.40
3425 4644 7.631377 GCTTCCTGGAAATACAAGTTGCATATT 60.631 37.037 10.86 0.00 0.00 1.28
3426 4645 6.183360 GCTTCCTGGAAATACAAGTTGCATAT 60.183 38.462 10.86 0.00 0.00 1.78
3427 4646 5.125417 GCTTCCTGGAAATACAAGTTGCATA 59.875 40.000 10.86 0.00 0.00 3.14
3428 4647 4.082026 GCTTCCTGGAAATACAAGTTGCAT 60.082 41.667 10.86 0.00 0.00 3.96
3429 4648 3.255642 GCTTCCTGGAAATACAAGTTGCA 59.744 43.478 10.86 0.00 0.00 4.08
3430 4649 3.367395 GGCTTCCTGGAAATACAAGTTGC 60.367 47.826 10.86 6.77 0.00 4.17
3431 4650 3.826157 TGGCTTCCTGGAAATACAAGTTG 59.174 43.478 10.86 0.00 0.00 3.16
3432 4651 4.112634 TGGCTTCCTGGAAATACAAGTT 57.887 40.909 10.86 0.00 0.00 2.66
3433 4652 3.806949 TGGCTTCCTGGAAATACAAGT 57.193 42.857 10.86 0.00 0.00 3.16
3434 4653 4.823989 CCTATGGCTTCCTGGAAATACAAG 59.176 45.833 10.86 5.82 0.00 3.16
3435 4654 4.792068 CCTATGGCTTCCTGGAAATACAA 58.208 43.478 10.86 0.00 0.00 2.41
3436 4655 3.435026 GCCTATGGCTTCCTGGAAATACA 60.435 47.826 10.86 9.78 46.69 2.29
3437 4656 3.149981 GCCTATGGCTTCCTGGAAATAC 58.850 50.000 10.86 4.36 46.69 1.89
3438 4657 3.508845 GCCTATGGCTTCCTGGAAATA 57.491 47.619 10.86 5.02 46.69 1.40
3439 4658 2.371658 GCCTATGGCTTCCTGGAAAT 57.628 50.000 10.86 4.06 46.69 2.17
3440 4659 3.903208 GCCTATGGCTTCCTGGAAA 57.097 52.632 10.86 0.00 46.69 3.13
3451 4670 2.747446 GTGTGTTTGTACTGGCCTATGG 59.253 50.000 3.32 0.00 0.00 2.74
3452 4671 3.188460 GTGTGTGTTTGTACTGGCCTATG 59.812 47.826 3.32 0.00 0.00 2.23
3453 4672 3.181449 TGTGTGTGTTTGTACTGGCCTAT 60.181 43.478 3.32 0.00 0.00 2.57
3454 4673 2.170817 TGTGTGTGTTTGTACTGGCCTA 59.829 45.455 3.32 0.00 0.00 3.93
3455 4674 1.065053 TGTGTGTGTTTGTACTGGCCT 60.065 47.619 3.32 0.00 0.00 5.19
3456 4675 1.064952 GTGTGTGTGTTTGTACTGGCC 59.935 52.381 0.00 0.00 0.00 5.36
3457 4676 1.740585 TGTGTGTGTGTTTGTACTGGC 59.259 47.619 0.00 0.00 0.00 4.85
3458 4677 2.744741 TGTGTGTGTGTGTTTGTACTGG 59.255 45.455 0.00 0.00 0.00 4.00
3459 4678 3.187432 TGTGTGTGTGTGTGTTTGTACTG 59.813 43.478 0.00 0.00 0.00 2.74
3460 4679 3.187637 GTGTGTGTGTGTGTGTTTGTACT 59.812 43.478 0.00 0.00 0.00 2.73
3461 4680 3.058846 TGTGTGTGTGTGTGTGTTTGTAC 60.059 43.478 0.00 0.00 0.00 2.90
3462 4681 3.058846 GTGTGTGTGTGTGTGTGTTTGTA 60.059 43.478 0.00 0.00 0.00 2.41
3463 4682 1.950216 TGTGTGTGTGTGTGTGTTTGT 59.050 42.857 0.00 0.00 0.00 2.83
3464 4683 2.287248 TGTGTGTGTGTGTGTGTGTTTG 60.287 45.455 0.00 0.00 0.00 2.93
3465 4684 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
3466 4685 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
3467 4686 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3468 4687 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3469 4688 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3470 4689 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3471 4690 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3472 4691 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3514 4737 7.543756 TGATCCCGTGTATATATATGTGTGTG 58.456 38.462 5.44 0.00 0.00 3.82
3516 4739 7.996385 TCTGATCCCGTGTATATATATGTGTG 58.004 38.462 5.44 0.00 0.00 3.82
3528 4751 8.417273 TCAGAATATTATTCTGATCCCGTGTA 57.583 34.615 31.54 15.56 46.95 2.90
3575 4798 2.677979 GGGAAGTTCAGGCGCGTTC 61.678 63.158 8.43 0.81 0.00 3.95
3638 4863 2.702592 AACCAGAATATTTCGCGGGA 57.297 45.000 6.13 0.00 33.13 5.14
3692 4917 9.699703 AACCGGTATTTAGTTACTAAAAACGTA 57.300 29.630 19.57 6.71 39.03 3.57
3738 4964 2.009774 CCGAGAGCAAAATCCGTCAAT 58.990 47.619 0.00 0.00 0.00 2.57
3742 4968 0.391263 GACCCGAGAGCAAAATCCGT 60.391 55.000 0.00 0.00 0.00 4.69
3830 5057 1.981256 ATGTTGGCGGAAGTTCAACT 58.019 45.000 5.01 0.00 42.93 3.16
3894 5121 8.947055 AAATTTAATTTGGGTCATGATACTGC 57.053 30.769 0.00 0.00 0.00 4.40
4205 5437 8.476064 TTTCATAAGCTTTCCAATGCCATATA 57.524 30.769 3.20 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.