Multiple sequence alignment - TraesCS1D01G030200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G030200 chr1D 100.000 2735 0 0 1 2735 11779260 11776526 0.000000e+00 5051.0
1 TraesCS1D01G030200 chr1A 92.111 2497 150 25 1 2467 13859176 13856697 0.000000e+00 3476.0
2 TraesCS1D01G030200 chr1A 93.143 175 10 2 2476 2649 13854596 13854423 3.490000e-64 255.0
3 TraesCS1D01G030200 chr1A 87.342 79 4 2 2648 2726 13854365 13854293 4.850000e-13 86.1
4 TraesCS1D01G030200 chr1B 90.512 1876 113 27 570 2397 17620698 17618840 0.000000e+00 2418.0
5 TraesCS1D01G030200 chr1B 76.923 845 184 10 1001 1840 597534281 597535119 1.150000e-128 470.0
6 TraesCS1D01G030200 chr1B 77.171 403 40 24 101 484 17621092 17620723 1.290000e-43 187.0
7 TraesCS1D01G030200 chr1B 83.206 131 18 4 2474 2603 17616974 17616847 1.720000e-22 117.0
8 TraesCS1D01G030200 chr5D 77.597 799 150 23 945 1733 555456680 555455901 8.930000e-125 457.0
9 TraesCS1D01G030200 chr5B 76.422 844 179 18 997 1831 695422372 695423204 3.230000e-119 438.0
10 TraesCS1D01G030200 chr5B 75.990 808 181 12 1028 1831 695967561 695968359 3.280000e-109 405.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G030200 chr1D 11776526 11779260 2734 True 5051.000000 5051 100.000000 1 2735 1 chr1D.!!$R1 2734
1 TraesCS1D01G030200 chr1A 13854293 13859176 4883 True 1272.366667 3476 90.865333 1 2726 3 chr1A.!!$R1 2725
2 TraesCS1D01G030200 chr1B 17616847 17621092 4245 True 907.333333 2418 83.629667 101 2603 3 chr1B.!!$R1 2502
3 TraesCS1D01G030200 chr1B 597534281 597535119 838 False 470.000000 470 76.923000 1001 1840 1 chr1B.!!$F1 839
4 TraesCS1D01G030200 chr5D 555455901 555456680 779 True 457.000000 457 77.597000 945 1733 1 chr5D.!!$R1 788
5 TraesCS1D01G030200 chr5B 695422372 695423204 832 False 438.000000 438 76.422000 997 1831 1 chr5B.!!$F1 834
6 TraesCS1D01G030200 chr5B 695967561 695968359 798 False 405.000000 405 75.990000 1028 1831 1 chr5B.!!$F2 803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 391 0.036875 CGGATCTGAAATAGGGGGCC 59.963 60.0 0.0 0.0 0.0 5.80 F
933 967 0.250640 CTGCTTGTCTGAGTTGCCCT 60.251 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1475 0.392193 CATGGTCAGAGGAGGTGCAC 60.392 60.0 8.8 8.8 0.00 4.57 R
2578 6014 0.030195 TACCCATCAGATCCCCTGCA 60.030 55.0 0.0 0.0 42.62 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.624861 CGTTTTATGCAGCTGAGAAGGAT 59.375 43.478 20.43 0.00 0.00 3.24
47 48 0.389296 CACATCGGCGGTACAGTCAA 60.389 55.000 7.21 0.00 0.00 3.18
58 59 3.997021 CGGTACAGTCAAGAAATGCTCTT 59.003 43.478 0.00 0.00 45.80 2.85
73 74 1.660560 CTCTTTTCATGCCTGGCCCG 61.661 60.000 17.53 7.19 0.00 6.13
83 84 0.754472 GCCTGGCCCGTACAAGTATA 59.246 55.000 7.66 0.00 0.00 1.47
98 99 8.749499 CGTACAAGTATAATACTTAACTGGCAC 58.251 37.037 0.00 0.00 46.66 5.01
182 183 0.036952 TCAGTAGTTGAGCTGCAGCC 60.037 55.000 34.39 24.89 43.38 4.85
200 212 0.512952 CCACACGCAAACAGAGTAGC 59.487 55.000 0.00 0.00 0.00 3.58
203 215 3.057019 CACACGCAAACAGAGTAGCTTA 58.943 45.455 0.00 0.00 0.00 3.09
204 216 3.057734 ACACGCAAACAGAGTAGCTTAC 58.942 45.455 0.00 0.00 0.00 2.34
230 242 3.303329 CCGAAATGCATCGACAGGTATTG 60.303 47.826 11.19 0.00 45.48 1.90
236 248 4.068599 TGCATCGACAGGTATTGACAAAA 58.931 39.130 0.00 0.00 0.00 2.44
288 304 4.829492 AGACAGCTGCTGGTTTTATTTTCT 59.171 37.500 31.00 18.60 35.51 2.52
337 353 6.899393 TCATAGCAGAAACAATCTTGGTTT 57.101 33.333 0.00 0.00 38.41 3.27
347 363 1.616159 ATCTTGGTTTGTTGACCCGG 58.384 50.000 0.00 0.00 39.01 5.73
355 371 1.515081 TTGTTGACCCGGTTCGAATC 58.485 50.000 0.00 0.00 0.00 2.52
368 384 4.628074 GGTTCGAATCCGGATCTGAAATA 58.372 43.478 24.76 8.25 36.24 1.40
375 391 0.036875 CGGATCTGAAATAGGGGGCC 59.963 60.000 0.00 0.00 0.00 5.80
392 408 1.517242 GCCTGTGGATATGCACTAGC 58.483 55.000 25.27 22.46 42.57 3.42
484 500 7.255381 GCTTACATATGTGATCTCAGCCAAAAT 60.255 37.037 18.81 0.00 0.00 1.82
486 502 9.625747 TTACATATGTGATCTCAGCCAAAATAA 57.374 29.630 18.81 0.00 0.00 1.40
487 503 8.701908 ACATATGTGATCTCAGCCAAAATAAT 57.298 30.769 7.78 0.00 0.00 1.28
519 535 4.806342 TTTAGGTGCTGAAAAAGTCGAC 57.194 40.909 7.70 7.70 0.00 4.20
525 541 4.024387 GGTGCTGAAAAAGTCGACACATTA 60.024 41.667 19.50 0.00 0.00 1.90
529 545 3.500680 TGAAAAAGTCGACACATTAGCCC 59.499 43.478 19.50 0.00 0.00 5.19
533 549 1.899814 AGTCGACACATTAGCCCTTCA 59.100 47.619 19.50 0.00 0.00 3.02
536 552 2.158957 TCGACACATTAGCCCTTCATCC 60.159 50.000 0.00 0.00 0.00 3.51
544 560 0.343372 AGCCCTTCATCCCTGTCCTA 59.657 55.000 0.00 0.00 0.00 2.94
549 565 4.493618 CCCTTCATCCCTGTCCTAATCTA 58.506 47.826 0.00 0.00 0.00 1.98
555 571 4.706842 TCCCTGTCCTAATCTAAATGCC 57.293 45.455 0.00 0.00 0.00 4.40
601 617 4.487714 AATCGAGGTTTGAATCCAGCTA 57.512 40.909 0.00 0.00 0.00 3.32
765 787 3.494749 GCTAACGAGGCTCTCTCTACCTA 60.495 52.174 13.50 0.00 40.30 3.08
767 789 3.412237 ACGAGGCTCTCTCTACCTATC 57.588 52.381 13.50 0.00 40.30 2.08
929 963 2.289002 GTGTTCCTGCTTGTCTGAGTTG 59.711 50.000 0.00 0.00 0.00 3.16
930 964 1.265365 GTTCCTGCTTGTCTGAGTTGC 59.735 52.381 0.00 0.00 0.00 4.17
933 967 0.250640 CTGCTTGTCTGAGTTGCCCT 60.251 55.000 0.00 0.00 0.00 5.19
991 1026 5.481824 TGCAGAACAAGGAATAGAGAGAGAA 59.518 40.000 0.00 0.00 0.00 2.87
992 1027 6.042143 GCAGAACAAGGAATAGAGAGAGAAG 58.958 44.000 0.00 0.00 0.00 2.85
993 1028 6.572519 CAGAACAAGGAATAGAGAGAGAAGG 58.427 44.000 0.00 0.00 0.00 3.46
994 1029 5.660864 AGAACAAGGAATAGAGAGAGAAGGG 59.339 44.000 0.00 0.00 0.00 3.95
995 1030 4.294347 ACAAGGAATAGAGAGAGAAGGGG 58.706 47.826 0.00 0.00 0.00 4.79
1111 1147 4.570663 GGGTCCGCCGTGAGATCG 62.571 72.222 0.00 0.00 34.97 3.69
1126 1162 0.837272 GATCGGGTCCCTCAAATCCA 59.163 55.000 6.29 0.00 0.00 3.41
1175 1211 4.065321 AGAAGTACACCATGCTAGATGC 57.935 45.455 0.00 0.00 43.25 3.91
1247 1285 2.606108 TGACATCGAAGATTGTGTCGG 58.394 47.619 9.37 0.00 45.12 4.79
1437 1475 0.107456 AGCTGGACGATATTGCCTGG 59.893 55.000 0.00 0.00 0.00 4.45
1438 1476 0.179045 GCTGGACGATATTGCCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
1505 1546 2.031012 TGCAGAGGAAGCACACCG 59.969 61.111 0.00 0.00 37.02 4.94
1597 1638 0.179004 TCGCAGGGTGTTGTCCATTT 60.179 50.000 0.00 0.00 0.00 2.32
1647 1688 0.881796 TAGCGCATGAGGTCTATCGG 59.118 55.000 11.47 0.00 0.00 4.18
1701 1742 4.623932 TGTATCAGTCTCACAAAAGCCT 57.376 40.909 0.00 0.00 0.00 4.58
1706 1747 5.227569 TCAGTCTCACAAAAGCCTGATAA 57.772 39.130 0.00 0.00 0.00 1.75
1736 1777 9.434420 GAGGATTATCAAGGATGTGATCTAAAG 57.566 37.037 0.00 0.00 39.07 1.85
1766 1808 7.469732 GCCTTTCCCAGATGATTCATAAAAGAG 60.470 40.741 0.00 2.46 0.00 2.85
1769 1811 8.687292 TTCCCAGATGATTCATAAAAGAGATG 57.313 34.615 0.00 0.00 0.00 2.90
1794 1836 7.283807 TGGACATTTAGGATGAAATGACATCTG 59.716 37.037 14.12 0.00 45.70 2.90
1856 1898 1.633945 AGCTTTTACCATTCCCTCCGT 59.366 47.619 0.00 0.00 0.00 4.69
1860 1902 4.643334 GCTTTTACCATTCCCTCCGTAAAT 59.357 41.667 0.00 0.00 32.40 1.40
1941 1993 5.685068 CGCACACACTGAAAAATCAACAATA 59.315 36.000 0.00 0.00 0.00 1.90
1944 1996 7.409661 GCACACACTGAAAAATCAACAATATCG 60.410 37.037 0.00 0.00 0.00 2.92
1986 2040 4.098349 CCACATGGCTTGCATAATTGTAGT 59.902 41.667 0.00 0.00 0.00 2.73
1987 2041 5.394443 CCACATGGCTTGCATAATTGTAGTT 60.394 40.000 0.00 0.00 0.00 2.24
2106 2171 5.163447 TGGCACATAGGTAGTAGCAAGTTAG 60.163 44.000 1.58 0.00 0.00 2.34
2109 2174 5.980116 CACATAGGTAGTAGCAAGTTAGCAG 59.020 44.000 1.58 0.00 36.85 4.24
2167 2232 8.313292 TGGCTATAAGATGCTGAAAAATGTTTT 58.687 29.630 0.00 0.00 0.00 2.43
2210 2284 4.905429 TCACCATTTCAGCTTAGTTGCTA 58.095 39.130 0.00 0.00 41.98 3.49
2316 2392 5.878332 TGATAATCTGCGAACATGTTGTT 57.122 34.783 17.58 0.00 44.37 2.83
2471 2547 5.551305 TTATGTCCAGACCACTATCATGG 57.449 43.478 0.00 0.00 46.10 3.66
2512 5948 6.260936 GTCTGGTTGGATATTACCATGAGTTG 59.739 42.308 0.00 0.00 43.15 3.16
2525 5961 1.896220 TGAGTTGAGTTGGTGCCATC 58.104 50.000 0.00 0.00 0.00 3.51
2528 5964 0.517316 GTTGAGTTGGTGCCATCGAC 59.483 55.000 0.00 0.00 0.00 4.20
2578 6014 4.278170 TGAACTCCATTTCGCTTTGAACAT 59.722 37.500 0.00 0.00 35.97 2.71
2618 6054 0.965439 AGGACTGATAGCGATGAGGC 59.035 55.000 0.00 0.00 0.00 4.70
2625 6061 1.731160 GATAGCGATGAGGCAATGAGC 59.269 52.381 0.00 0.00 44.65 4.26
2656 6151 2.070861 GCCGATCGAATATGGCGAC 58.929 57.895 18.66 0.00 40.94 5.19
2666 6161 0.175760 ATATGGCGACGTGAACTGCT 59.824 50.000 0.00 0.00 0.00 4.24
2671 6166 0.582005 GCGACGTGAACTGCTTTTCT 59.418 50.000 0.00 0.00 0.00 2.52
2700 6195 5.078949 TCACATGTCTTGTTCCCATTTCAT 58.921 37.500 0.00 0.00 36.00 2.57
2701 6196 5.539574 TCACATGTCTTGTTCCCATTTCATT 59.460 36.000 0.00 0.00 36.00 2.57
2702 6197 6.041865 TCACATGTCTTGTTCCCATTTCATTT 59.958 34.615 0.00 0.00 36.00 2.32
2703 6198 6.366877 CACATGTCTTGTTCCCATTTCATTTC 59.633 38.462 0.00 0.00 36.00 2.17
2704 6199 5.119931 TGTCTTGTTCCCATTTCATTTCG 57.880 39.130 0.00 0.00 0.00 3.46
2726 6221 4.332828 GTTTTACTAGTGCAGGGGTGATT 58.667 43.478 5.39 0.00 0.00 2.57
2727 6222 3.627395 TTACTAGTGCAGGGGTGATTG 57.373 47.619 5.39 0.00 0.00 2.67
2728 6223 0.620556 ACTAGTGCAGGGGTGATTGG 59.379 55.000 0.00 0.00 0.00 3.16
2729 6224 0.911769 CTAGTGCAGGGGTGATTGGA 59.088 55.000 0.00 0.00 0.00 3.53
2730 6225 1.492176 CTAGTGCAGGGGTGATTGGAT 59.508 52.381 0.00 0.00 0.00 3.41
2731 6226 0.706433 AGTGCAGGGGTGATTGGATT 59.294 50.000 0.00 0.00 0.00 3.01
2732 6227 0.819582 GTGCAGGGGTGATTGGATTG 59.180 55.000 0.00 0.00 0.00 2.67
2733 6228 0.409092 TGCAGGGGTGATTGGATTGT 59.591 50.000 0.00 0.00 0.00 2.71
2734 6229 1.203162 TGCAGGGGTGATTGGATTGTT 60.203 47.619 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.433491 GTACCGCCGATGTGCACA 60.433 61.111 24.08 24.08 0.00 4.57
36 37 3.589988 AGAGCATTTCTTGACTGTACCG 58.410 45.455 0.00 0.00 29.61 4.02
47 48 3.194968 CCAGGCATGAAAAGAGCATTTCT 59.805 43.478 0.00 0.00 39.51 2.52
58 59 1.377987 GTACGGGCCAGGCATGAAA 60.378 57.895 15.19 0.00 0.00 2.69
83 84 2.682856 CCATGCGTGCCAGTTAAGTATT 59.317 45.455 0.00 0.00 0.00 1.89
98 99 3.189287 AGAAGAAACAGCTAAACCATGCG 59.811 43.478 0.00 0.00 0.00 4.73
182 183 1.502231 AGCTACTCTGTTTGCGTGTG 58.498 50.000 0.00 0.00 0.00 3.82
200 212 0.654472 GATGCATTTCGGCGCGTAAG 60.654 55.000 8.43 0.00 36.28 2.34
203 215 4.222589 CGATGCATTTCGGCGCGT 62.223 61.111 8.43 0.00 35.50 6.01
204 216 3.924065 TCGATGCATTTCGGCGCG 61.924 61.111 9.67 0.00 39.56 6.86
288 304 3.056891 GCCTTAGGCTGTTTTATGTTGCA 60.057 43.478 17.16 0.00 46.69 4.08
337 353 0.320946 GGATTCGAACCGGGTCAACA 60.321 55.000 21.79 1.94 0.00 3.33
347 363 4.686554 CCTATTTCAGATCCGGATTCGAAC 59.313 45.833 20.22 5.06 39.00 3.95
355 371 0.036875 GCCCCCTATTTCAGATCCGG 59.963 60.000 0.00 0.00 0.00 5.14
368 384 2.464403 GCATATCCACAGGCCCCCT 61.464 63.158 0.00 0.00 0.00 4.79
396 412 5.484290 CCCCTCTAGTCACCTTCTCTAAAAA 59.516 44.000 0.00 0.00 0.00 1.94
489 505 8.815912 ACTTTTTCAGCACCTAAATTGGATTAT 58.184 29.630 0.00 0.00 0.00 1.28
490 506 8.189119 ACTTTTTCAGCACCTAAATTGGATTA 57.811 30.769 0.00 0.00 0.00 1.75
508 524 3.751698 AGGGCTAATGTGTCGACTTTTTC 59.248 43.478 17.92 3.09 0.00 2.29
519 535 2.092212 ACAGGGATGAAGGGCTAATGTG 60.092 50.000 0.00 0.00 0.00 3.21
525 541 0.343372 TAGGACAGGGATGAAGGGCT 59.657 55.000 0.00 0.00 0.00 5.19
529 545 6.429385 GCATTTAGATTAGGACAGGGATGAAG 59.571 42.308 0.00 0.00 0.00 3.02
533 549 4.665009 TGGCATTTAGATTAGGACAGGGAT 59.335 41.667 0.00 0.00 0.00 3.85
536 552 4.818546 CACTGGCATTTAGATTAGGACAGG 59.181 45.833 0.00 0.00 0.00 4.00
544 560 5.106157 GCAACTGTACACTGGCATTTAGATT 60.106 40.000 0.00 0.00 0.00 2.40
549 565 1.613437 GGCAACTGTACACTGGCATTT 59.387 47.619 17.41 0.00 35.79 2.32
555 571 0.531974 ACGGTGGCAACTGTACACTG 60.532 55.000 3.05 13.90 44.36 3.66
601 617 3.431233 CGCGAATCTCATACAAGCATCAT 59.569 43.478 0.00 0.00 0.00 2.45
765 787 4.537135 ACAACTTATGTCAGGTCACGAT 57.463 40.909 0.00 0.00 37.96 3.73
767 789 6.721571 AATAACAACTTATGTCAGGTCACG 57.278 37.500 0.00 0.00 42.99 4.35
929 963 0.613260 TGTGTGATGGTAGTGAGGGC 59.387 55.000 0.00 0.00 0.00 5.19
930 964 1.623311 TGTGTGTGATGGTAGTGAGGG 59.377 52.381 0.00 0.00 0.00 4.30
933 967 3.828875 TTGTGTGTGTGATGGTAGTGA 57.171 42.857 0.00 0.00 0.00 3.41
1018 1053 2.972505 CAACGCGCCCAGTGAAGT 60.973 61.111 5.73 0.00 0.00 3.01
1111 1147 0.332972 AGCTTGGATTTGAGGGACCC 59.667 55.000 0.59 0.59 0.00 4.46
1175 1211 2.938756 GCCTTCACTTGGACATCTGGAG 60.939 54.545 0.00 0.00 0.00 3.86
1247 1285 2.608752 CCAAGCTGGTGAATGAACTTGC 60.609 50.000 0.00 0.00 34.57 4.01
1366 1404 1.517257 CGCGAGCCTTCAGATCGTT 60.517 57.895 0.00 0.00 38.66 3.85
1437 1475 0.392193 CATGGTCAGAGGAGGTGCAC 60.392 60.000 8.80 8.80 0.00 4.57
1438 1476 1.985614 CATGGTCAGAGGAGGTGCA 59.014 57.895 0.00 0.00 0.00 4.57
1505 1546 2.332654 GGACCGTCAATGCCCACAC 61.333 63.158 0.00 0.00 0.00 3.82
1597 1638 1.771255 CCCCAATCCACCAAAACCAAA 59.229 47.619 0.00 0.00 0.00 3.28
1647 1688 3.140325 TGATAATGCCCCCGAATCTTC 57.860 47.619 0.00 0.00 0.00 2.87
1706 1747 8.501070 AGATCACATCCTTGATAATCCTCTTTT 58.499 33.333 0.00 0.00 36.30 2.27
1736 1777 2.725221 ATCATCTGGGAAAGGCACTC 57.275 50.000 0.00 0.00 38.49 3.51
1766 1808 7.572523 TGTCATTTCATCCTAAATGTCCATC 57.427 36.000 8.65 0.00 43.96 3.51
1769 1811 7.284034 ACAGATGTCATTTCATCCTAAATGTCC 59.716 37.037 8.65 3.32 43.96 4.02
1794 1836 2.077403 GCTCTCTCAGCTTCGCAAC 58.923 57.895 0.00 0.00 45.83 4.17
1856 1898 8.871629 AATGGGAACTACACATGTTACATTTA 57.128 30.769 0.00 0.00 42.39 1.40
1860 1902 8.871629 AAATAATGGGAACTACACATGTTACA 57.128 30.769 0.00 0.00 42.39 2.41
1941 1993 1.486211 AGTACTGTTAGGGCTGCGAT 58.514 50.000 0.00 0.00 0.00 4.58
1944 1996 2.235402 TGGTAAGTACTGTTAGGGCTGC 59.765 50.000 0.00 0.00 0.00 5.25
1986 2040 7.643569 AAATTCAGTATGGTGCATGTGATAA 57.356 32.000 0.00 0.00 36.16 1.75
1987 2041 7.643569 AAAATTCAGTATGGTGCATGTGATA 57.356 32.000 0.00 0.00 36.16 2.15
2064 2129 4.273235 GTGCCACAATCCTTTTCCAAAAAG 59.727 41.667 5.40 5.40 0.00 2.27
2083 2148 3.821421 ACTTGCTACTACCTATGTGCC 57.179 47.619 0.00 0.00 0.00 5.01
2106 2171 1.348036 AGGTTTACCTGTGGACTCTGC 59.652 52.381 0.00 0.00 46.55 4.26
2167 2232 7.103641 GGTGAACTACAGGAAGATTTATGTCA 58.896 38.462 0.00 0.00 0.00 3.58
2183 2248 6.603095 CAACTAAGCTGAAATGGTGAACTAC 58.397 40.000 0.00 0.00 0.00 2.73
2210 2284 6.208007 TCATCACACAAAGATCAAAAGAGCAT 59.792 34.615 0.00 0.00 0.00 3.79
2316 2392 8.206325 TGTAAAATTACAAGACAAACGGTACA 57.794 30.769 3.60 0.00 40.43 2.90
2368 2444 2.101582 GCACTGATCTACCCGAGAACAT 59.898 50.000 0.00 0.00 36.47 2.71
2372 2448 1.476891 GTTGCACTGATCTACCCGAGA 59.523 52.381 0.00 0.00 39.01 4.04
2408 2484 0.030638 ACACCAATTTCTGCACACGC 59.969 50.000 0.00 0.00 39.24 5.34
2467 2543 0.174389 CAGGAGACGACTGGACCATG 59.826 60.000 0.00 0.00 32.38 3.66
2469 2545 4.097218 CAGGAGACGACTGGACCA 57.903 61.111 0.00 0.00 32.38 4.02
2478 5913 1.185618 TCCAACCAGACCAGGAGACG 61.186 60.000 0.00 0.00 0.00 4.18
2512 5948 1.078759 CTCGTCGATGGCACCAACTC 61.079 60.000 4.48 0.00 0.00 3.01
2525 5961 0.242825 TCAGGTTACCAAGCTCGTCG 59.757 55.000 3.51 0.00 37.06 5.12
2528 5964 0.736325 CGGTCAGGTTACCAAGCTCG 60.736 60.000 3.51 0.00 39.71 5.03
2578 6014 0.030195 TACCCATCAGATCCCCTGCA 60.030 55.000 0.00 0.00 42.62 4.41
2631 6067 3.119291 CCATATTCGATCGGCTATCAGC 58.881 50.000 16.41 0.00 41.46 4.26
2649 6085 0.884704 AAAGCAGTTCACGTCGCCAT 60.885 50.000 0.00 0.00 0.00 4.40
2650 6086 1.092921 AAAAGCAGTTCACGTCGCCA 61.093 50.000 0.00 0.00 0.00 5.69
2653 6148 1.858458 TGAGAAAAGCAGTTCACGTCG 59.142 47.619 0.00 0.00 0.00 5.12
2656 6151 5.172053 GTGAATTTGAGAAAAGCAGTTCACG 59.828 40.000 0.00 0.00 35.29 4.35
2666 6161 7.706179 GGAACAAGACATGTGAATTTGAGAAAA 59.294 33.333 1.15 0.00 42.99 2.29
2671 6166 4.892345 TGGGAACAAGACATGTGAATTTGA 59.108 37.500 1.15 0.00 42.99 2.69
2700 6195 3.181452 ACCCCTGCACTAGTAAAACGAAA 60.181 43.478 0.00 0.00 0.00 3.46
2701 6196 2.369532 ACCCCTGCACTAGTAAAACGAA 59.630 45.455 0.00 0.00 0.00 3.85
2702 6197 1.972795 ACCCCTGCACTAGTAAAACGA 59.027 47.619 0.00 0.00 0.00 3.85
2703 6198 2.073816 CACCCCTGCACTAGTAAAACG 58.926 52.381 0.00 0.00 0.00 3.60
2704 6199 3.412237 TCACCCCTGCACTAGTAAAAC 57.588 47.619 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.