Multiple sequence alignment - TraesCS1D01G028600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G028600 chr1D 100.000 5841 0 0 1 5841 11272115 11277955 0.000000e+00 10787.0
1 TraesCS1D01G028600 chr1D 88.594 2069 231 3 2538 4602 11495881 11497948 0.000000e+00 2508.0
2 TraesCS1D01G028600 chr1D 86.429 2299 273 26 2536 4799 11289725 11292019 0.000000e+00 2481.0
3 TraesCS1D01G028600 chr1D 87.081 2090 257 10 2533 4614 11178482 11180566 0.000000e+00 2351.0
4 TraesCS1D01G028600 chr1D 88.014 876 91 9 996 1865 11494270 11495137 0.000000e+00 1024.0
5 TraesCS1D01G028600 chr1D 82.348 1099 160 21 894 1968 11287938 11289026 0.000000e+00 924.0
6 TraesCS1D01G028600 chr1D 81.217 937 153 12 951 1884 11453881 11454797 0.000000e+00 734.0
7 TraesCS1D01G028600 chr1D 87.683 479 42 2 2047 2508 11289045 11289523 5.150000e-150 542.0
8 TraesCS1D01G028600 chr1D 93.536 263 16 1 7 268 321209662 321209400 1.970000e-104 390.0
9 TraesCS1D01G028600 chr1D 89.831 177 18 0 636 812 11453041 11453217 1.640000e-55 228.0
10 TraesCS1D01G028600 chr1D 95.455 44 2 0 834 877 21479105 21479148 2.920000e-08 71.3
11 TraesCS1D01G028600 chr1B 92.674 2266 116 19 271 2514 17019654 17017417 0.000000e+00 3219.0
12 TraesCS1D01G028600 chr1B 86.846 2083 252 13 2536 4614 16891888 16893952 0.000000e+00 2309.0
13 TraesCS1D01G028600 chr1B 86.087 920 118 7 995 1907 16856394 16857310 0.000000e+00 981.0
14 TraesCS1D01G028600 chr1B 84.663 978 139 6 936 1907 16529969 16530941 0.000000e+00 965.0
15 TraesCS1D01G028600 chr1B 84.232 964 121 13 1000 1955 16925811 16926751 0.000000e+00 909.0
16 TraesCS1D01G028600 chr1B 84.309 854 85 28 5008 5840 16776095 16776920 0.000000e+00 789.0
17 TraesCS1D01G028600 chr1B 93.284 268 18 0 1 268 409265935 409265668 4.240000e-106 396.0
18 TraesCS1D01G028600 chr1B 93.893 262 16 0 1 262 431475938 431476199 4.240000e-106 396.0
19 TraesCS1D01G028600 chr1B 79.092 617 81 26 4699 5287 16860549 16861145 1.190000e-101 381.0
20 TraesCS1D01G028600 chr1B 73.930 514 77 35 5167 5644 16894835 16895327 2.820000e-33 154.0
21 TraesCS1D01G028600 chr1B 73.541 514 79 37 5167 5644 16844116 16844608 6.100000e-30 143.0
22 TraesCS1D01G028600 chr1B 82.051 117 12 4 5235 5351 16633190 16633297 2.240000e-14 91.6
23 TraesCS1D01G028600 chr1B 100.000 39 0 0 832 870 19945955 19945917 8.120000e-09 73.1
24 TraesCS1D01G028600 chr1B 97.500 40 0 1 831 870 19614524 19614486 3.780000e-07 67.6
25 TraesCS1D01G028600 chr1A 85.324 2637 314 44 2520 5115 13571212 13573816 0.000000e+00 2658.0
26 TraesCS1D01G028600 chr1A 88.289 2092 228 14 2520 4601 13348988 13351072 0.000000e+00 2490.0
27 TraesCS1D01G028600 chr1A 86.304 2300 263 33 2536 4799 13415679 13417962 0.000000e+00 2455.0
28 TraesCS1D01G028600 chr1A 94.427 1597 62 8 616 2204 13569151 13570728 0.000000e+00 2431.0
29 TraesCS1D01G028600 chr1A 87.273 2090 250 13 2536 4614 12589098 12587014 0.000000e+00 2372.0
30 TraesCS1D01G028600 chr1A 85.789 2090 278 16 2533 4614 13454719 13456797 0.000000e+00 2196.0
31 TraesCS1D01G028600 chr1A 92.387 1353 69 12 1180 2514 12571050 12569714 0.000000e+00 1897.0
32 TraesCS1D01G028600 chr1A 94.205 1208 42 4 1000 2204 13347389 13348571 0.000000e+00 1818.0
33 TraesCS1D01G028600 chr1A 84.851 1010 127 16 912 1907 13453189 13454186 0.000000e+00 994.0
34 TraesCS1D01G028600 chr1A 81.686 617 66 22 5232 5832 13457383 13457968 2.460000e-128 470.0
35 TraesCS1D01G028600 chr1A 84.314 102 9 3 464 562 13663139 13663236 6.230000e-15 93.5
36 TraesCS1D01G028600 chr1A 89.552 67 7 0 496 562 13313990 13314056 1.040000e-12 86.1
37 TraesCS1D01G028600 chr3B 93.916 263 16 0 6 268 774417592 774417330 1.180000e-106 398.0
38 TraesCS1D01G028600 chr4B 93.893 262 16 0 1 262 463565149 463565410 4.240000e-106 396.0
39 TraesCS1D01G028600 chr4B 100.000 41 0 0 830 870 404799667 404799707 6.280000e-10 76.8
40 TraesCS1D01G028600 chr4B 97.619 42 0 1 830 870 17851563 17851604 2.920000e-08 71.3
41 TraesCS1D01G028600 chr7D 93.511 262 17 0 1 262 409565468 409565729 1.970000e-104 390.0
42 TraesCS1D01G028600 chr7D 79.213 178 32 4 5459 5636 32117357 32117185 1.030000e-22 119.0
43 TraesCS1D01G028600 chr6B 92.910 268 19 0 1 268 239409322 239409055 1.970000e-104 390.0
44 TraesCS1D01G028600 chr4D 92.910 268 19 0 1 268 374446074 374445807 1.970000e-104 390.0
45 TraesCS1D01G028600 chr2D 93.511 262 17 0 7 268 158918086 158917825 1.970000e-104 390.0
46 TraesCS1D01G028600 chr5D 79.429 175 31 4 5459 5633 503799079 503799248 1.030000e-22 119.0
47 TraesCS1D01G028600 chr7B 97.674 43 1 0 833 875 118645122 118645164 2.260000e-09 75.0
48 TraesCS1D01G028600 chr3A 97.619 42 1 0 829 870 532857588 532857629 8.120000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G028600 chr1D 11272115 11277955 5840 False 10787.000000 10787 100.000000 1 5841 1 chr1D.!!$F2 5840
1 TraesCS1D01G028600 chr1D 11178482 11180566 2084 False 2351.000000 2351 87.081000 2533 4614 1 chr1D.!!$F1 2081
2 TraesCS1D01G028600 chr1D 11494270 11497948 3678 False 1766.000000 2508 88.304000 996 4602 2 chr1D.!!$F6 3606
3 TraesCS1D01G028600 chr1D 11287938 11292019 4081 False 1315.666667 2481 85.486667 894 4799 3 chr1D.!!$F4 3905
4 TraesCS1D01G028600 chr1D 11453041 11454797 1756 False 481.000000 734 85.524000 636 1884 2 chr1D.!!$F5 1248
5 TraesCS1D01G028600 chr1B 17017417 17019654 2237 True 3219.000000 3219 92.674000 271 2514 1 chr1B.!!$R1 2243
6 TraesCS1D01G028600 chr1B 16891888 16895327 3439 False 1231.500000 2309 80.388000 2536 5644 2 chr1B.!!$F8 3108
7 TraesCS1D01G028600 chr1B 16529969 16530941 972 False 965.000000 965 84.663000 936 1907 1 chr1B.!!$F1 971
8 TraesCS1D01G028600 chr1B 16925811 16926751 940 False 909.000000 909 84.232000 1000 1955 1 chr1B.!!$F5 955
9 TraesCS1D01G028600 chr1B 16776095 16776920 825 False 789.000000 789 84.309000 5008 5840 1 chr1B.!!$F3 832
10 TraesCS1D01G028600 chr1B 16856394 16861145 4751 False 681.000000 981 82.589500 995 5287 2 chr1B.!!$F7 4292
11 TraesCS1D01G028600 chr1A 13569151 13573816 4665 False 2544.500000 2658 89.875500 616 5115 2 chr1A.!!$F6 4499
12 TraesCS1D01G028600 chr1A 13415679 13417962 2283 False 2455.000000 2455 86.304000 2536 4799 1 chr1A.!!$F2 2263
13 TraesCS1D01G028600 chr1A 12587014 12589098 2084 True 2372.000000 2372 87.273000 2536 4614 1 chr1A.!!$R2 2078
14 TraesCS1D01G028600 chr1A 13347389 13351072 3683 False 2154.000000 2490 91.247000 1000 4601 2 chr1A.!!$F4 3601
15 TraesCS1D01G028600 chr1A 12569714 12571050 1336 True 1897.000000 1897 92.387000 1180 2514 1 chr1A.!!$R1 1334
16 TraesCS1D01G028600 chr1A 13453189 13457968 4779 False 1220.000000 2196 84.108667 912 5832 3 chr1A.!!$F5 4920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.178068 GCCTGATAAGCTCGAACCCA 59.822 55.000 0.00 0.00 0.00 4.51 F
134 135 0.461339 GCTCGAACCCAAAGCGGATA 60.461 55.000 0.00 0.00 36.56 2.59 F
512 513 1.142688 AAGGTGGGCTTGGTCCAGAT 61.143 55.000 0.00 0.00 38.31 2.90 F
1247 1788 1.467713 GGAGGATGTCGTCGACAAGTC 60.468 57.143 30.05 22.89 45.96 3.01 F
2355 3058 1.338105 CCCCTTTTAGCCTTGCTTTGC 60.338 52.381 0.00 0.00 40.44 3.68 F
3670 4653 0.035881 CTGCAGCTTCACCTCAAGGA 59.964 55.000 0.00 0.00 38.94 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 1800 0.179000 AGGCTGCTGAATACCTTCGG 59.821 55.000 0.00 0.00 40.22 4.30 R
1612 2168 1.547901 GGTCTTTCCCAACCCTCCAAG 60.548 57.143 0.00 0.00 0.00 3.61 R
1803 2361 5.405935 TGTTCTCGAGGAATTCATGAAGA 57.594 39.130 14.54 3.63 36.24 2.87 R
2540 3517 1.173913 TCAGGCGTCTCAATCTCGAA 58.826 50.000 0.00 0.00 0.00 3.71 R
3867 4853 0.107263 TTCTGCAACACACCAGCTGA 60.107 50.000 17.39 0.00 34.99 4.26 R
4850 6170 0.247460 TGGAATGTGAGTCGCTCTGG 59.753 55.000 5.11 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.409643 CCATGTAATTCCGTTGAGATGAC 57.590 43.478 0.00 0.00 0.00 3.06
25 26 3.932710 TGTAATTCCGTTGAGATGACAGC 59.067 43.478 0.00 0.00 0.00 4.40
26 27 1.645034 ATTCCGTTGAGATGACAGCG 58.355 50.000 0.00 0.00 42.34 5.18
27 28 0.317160 TTCCGTTGAGATGACAGCGT 59.683 50.000 0.00 0.00 41.44 5.07
28 29 1.170442 TCCGTTGAGATGACAGCGTA 58.830 50.000 0.00 0.00 41.44 4.42
29 30 1.749063 TCCGTTGAGATGACAGCGTAT 59.251 47.619 0.00 0.00 41.44 3.06
30 31 1.854743 CCGTTGAGATGACAGCGTATG 59.145 52.381 0.00 0.00 41.44 2.39
31 32 2.479560 CCGTTGAGATGACAGCGTATGA 60.480 50.000 0.00 0.00 41.44 2.15
32 33 3.179048 CGTTGAGATGACAGCGTATGAA 58.821 45.455 0.00 0.00 39.05 2.57
33 34 3.000674 CGTTGAGATGACAGCGTATGAAC 60.001 47.826 0.00 0.00 39.05 3.18
34 35 4.177026 GTTGAGATGACAGCGTATGAACT 58.823 43.478 0.00 0.00 0.00 3.01
35 36 5.340803 GTTGAGATGACAGCGTATGAACTA 58.659 41.667 0.00 0.00 0.00 2.24
36 37 5.774498 TGAGATGACAGCGTATGAACTAT 57.226 39.130 0.00 0.00 0.00 2.12
37 38 5.523369 TGAGATGACAGCGTATGAACTATG 58.477 41.667 0.00 0.00 0.00 2.23
38 39 4.876125 AGATGACAGCGTATGAACTATGG 58.124 43.478 0.00 0.00 0.00 2.74
39 40 4.342378 AGATGACAGCGTATGAACTATGGT 59.658 41.667 0.00 0.00 0.00 3.55
40 41 4.465632 TGACAGCGTATGAACTATGGTT 57.534 40.909 0.00 0.00 38.52 3.67
41 42 4.827692 TGACAGCGTATGAACTATGGTTT 58.172 39.130 0.00 0.00 35.58 3.27
42 43 5.968254 TGACAGCGTATGAACTATGGTTTA 58.032 37.500 0.00 0.00 35.58 2.01
43 44 6.040247 TGACAGCGTATGAACTATGGTTTAG 58.960 40.000 0.00 0.00 35.58 1.85
44 45 6.127563 TGACAGCGTATGAACTATGGTTTAGA 60.128 38.462 0.00 0.00 35.58 2.10
45 46 6.273825 ACAGCGTATGAACTATGGTTTAGAG 58.726 40.000 0.00 0.00 35.58 2.43
46 47 6.096423 ACAGCGTATGAACTATGGTTTAGAGA 59.904 38.462 0.00 0.00 35.58 3.10
47 48 6.978659 CAGCGTATGAACTATGGTTTAGAGAA 59.021 38.462 0.00 0.00 35.58 2.87
48 49 7.491372 CAGCGTATGAACTATGGTTTAGAGAAA 59.509 37.037 0.00 0.00 35.58 2.52
49 50 7.491696 AGCGTATGAACTATGGTTTAGAGAAAC 59.508 37.037 0.00 0.00 43.65 2.78
61 62 6.862711 GTTTAGAGAAACCTAAGCTGTTGT 57.137 37.500 0.00 0.00 39.29 3.32
62 63 7.260558 GTTTAGAGAAACCTAAGCTGTTGTT 57.739 36.000 0.00 0.00 39.29 2.83
63 64 7.704271 GTTTAGAGAAACCTAAGCTGTTGTTT 58.296 34.615 7.28 7.28 39.29 2.83
64 65 7.492352 TTAGAGAAACCTAAGCTGTTGTTTC 57.508 36.000 19.67 19.67 44.23 2.78
70 71 8.920509 GAAACCTAAGCTGTTGTTTCTTAAAA 57.079 30.769 19.86 0.00 41.93 1.52
71 72 8.926715 AAACCTAAGCTGTTGTTTCTTAAAAG 57.073 30.769 0.00 0.00 0.00 2.27
72 73 7.640597 ACCTAAGCTGTTGTTTCTTAAAAGT 57.359 32.000 0.00 0.00 0.00 2.66
73 74 8.063200 ACCTAAGCTGTTGTTTCTTAAAAGTT 57.937 30.769 0.00 0.00 0.00 2.66
74 75 8.528643 ACCTAAGCTGTTGTTTCTTAAAAGTTT 58.471 29.630 0.00 0.00 0.00 2.66
75 76 8.807581 CCTAAGCTGTTGTTTCTTAAAAGTTTG 58.192 33.333 0.00 0.00 0.00 2.93
76 77 7.595311 AAGCTGTTGTTTCTTAAAAGTTTGG 57.405 32.000 0.00 0.00 0.00 3.28
77 78 6.106003 AGCTGTTGTTTCTTAAAAGTTTGGG 58.894 36.000 0.00 0.00 0.00 4.12
78 79 5.293324 GCTGTTGTTTCTTAAAAGTTTGGGG 59.707 40.000 0.00 0.00 0.00 4.96
79 80 5.179533 TGTTGTTTCTTAAAAGTTTGGGGC 58.820 37.500 0.00 0.00 0.00 5.80
80 81 5.046231 TGTTGTTTCTTAAAAGTTTGGGGCT 60.046 36.000 0.00 0.00 0.00 5.19
81 82 5.017294 TGTTTCTTAAAAGTTTGGGGCTG 57.983 39.130 0.00 0.00 0.00 4.85
82 83 3.744238 TTCTTAAAAGTTTGGGGCTGC 57.256 42.857 0.00 0.00 0.00 5.25
83 84 1.611491 TCTTAAAAGTTTGGGGCTGCG 59.389 47.619 0.00 0.00 0.00 5.18
84 85 1.611491 CTTAAAAGTTTGGGGCTGCGA 59.389 47.619 0.00 0.00 0.00 5.10
85 86 0.955905 TAAAAGTTTGGGGCTGCGAC 59.044 50.000 0.00 0.00 0.00 5.19
86 87 2.070654 AAAAGTTTGGGGCTGCGACG 62.071 55.000 0.00 0.00 0.00 5.12
89 90 4.947147 TTTGGGGCTGCGACGCTT 62.947 61.111 22.08 0.00 0.00 4.68
90 91 3.538785 TTTGGGGCTGCGACGCTTA 62.539 57.895 22.08 0.00 0.00 3.09
91 92 2.813226 TTTGGGGCTGCGACGCTTAT 62.813 55.000 22.08 0.00 0.00 1.73
92 93 3.272334 GGGGCTGCGACGCTTATG 61.272 66.667 22.08 9.56 0.00 1.90
93 94 2.511600 GGGCTGCGACGCTTATGT 60.512 61.111 22.08 0.00 0.00 2.29
94 95 2.703409 GGCTGCGACGCTTATGTG 59.297 61.111 22.08 5.42 0.00 3.21
95 96 1.809619 GGCTGCGACGCTTATGTGA 60.810 57.895 22.08 0.00 0.00 3.58
96 97 1.358725 GGCTGCGACGCTTATGTGAA 61.359 55.000 22.08 0.00 0.00 3.18
97 98 0.442310 GCTGCGACGCTTATGTGAAA 59.558 50.000 22.08 0.00 0.00 2.69
98 99 1.136085 GCTGCGACGCTTATGTGAAAA 60.136 47.619 22.08 0.00 0.00 2.29
99 100 2.664424 GCTGCGACGCTTATGTGAAAAA 60.664 45.455 22.08 0.00 0.00 1.94
100 101 3.155998 CTGCGACGCTTATGTGAAAAAG 58.844 45.455 22.08 0.97 0.00 2.27
101 102 2.546368 TGCGACGCTTATGTGAAAAAGT 59.454 40.909 22.08 0.00 0.00 2.66
102 103 3.002862 TGCGACGCTTATGTGAAAAAGTT 59.997 39.130 22.08 0.00 0.00 2.66
103 104 3.972502 GCGACGCTTATGTGAAAAAGTTT 59.027 39.130 13.73 0.00 0.00 2.66
104 105 4.439776 GCGACGCTTATGTGAAAAAGTTTT 59.560 37.500 13.73 0.00 0.00 2.43
105 106 5.622041 GCGACGCTTATGTGAAAAAGTTTTA 59.378 36.000 13.73 0.00 0.00 1.52
106 107 6.183359 GCGACGCTTATGTGAAAAAGTTTTAG 60.183 38.462 13.73 0.00 0.00 1.85
107 108 6.183359 CGACGCTTATGTGAAAAAGTTTTAGC 60.183 38.462 0.24 4.30 0.00 3.09
108 109 5.918576 ACGCTTATGTGAAAAAGTTTTAGCC 59.081 36.000 0.24 0.00 0.00 3.93
109 110 6.149633 CGCTTATGTGAAAAAGTTTTAGCCT 58.850 36.000 0.24 0.00 0.00 4.58
110 111 6.088085 CGCTTATGTGAAAAAGTTTTAGCCTG 59.912 38.462 0.24 0.00 0.00 4.85
111 112 7.145323 GCTTATGTGAAAAAGTTTTAGCCTGA 58.855 34.615 0.24 0.00 0.00 3.86
112 113 7.814587 GCTTATGTGAAAAAGTTTTAGCCTGAT 59.185 33.333 0.24 0.00 0.00 2.90
116 117 7.145323 TGTGAAAAAGTTTTAGCCTGATAAGC 58.855 34.615 0.24 0.00 0.00 3.09
117 118 7.014230 TGTGAAAAAGTTTTAGCCTGATAAGCT 59.986 33.333 0.24 0.00 44.49 3.74
118 119 7.539022 GTGAAAAAGTTTTAGCCTGATAAGCTC 59.461 37.037 0.24 0.00 41.83 4.09
119 120 5.803020 AAAGTTTTAGCCTGATAAGCTCG 57.197 39.130 0.00 0.00 41.83 5.03
120 121 4.737855 AGTTTTAGCCTGATAAGCTCGA 57.262 40.909 0.00 0.00 41.83 4.04
121 122 5.086104 AGTTTTAGCCTGATAAGCTCGAA 57.914 39.130 0.00 0.00 41.83 3.71
122 123 4.870991 AGTTTTAGCCTGATAAGCTCGAAC 59.129 41.667 0.00 0.00 41.83 3.95
123 124 3.454371 TTAGCCTGATAAGCTCGAACC 57.546 47.619 0.00 0.00 41.83 3.62
124 125 0.466124 AGCCTGATAAGCTCGAACCC 59.534 55.000 0.00 0.00 34.91 4.11
125 126 0.178068 GCCTGATAAGCTCGAACCCA 59.822 55.000 0.00 0.00 0.00 4.51
126 127 1.406887 GCCTGATAAGCTCGAACCCAA 60.407 52.381 0.00 0.00 0.00 4.12
127 128 2.939640 GCCTGATAAGCTCGAACCCAAA 60.940 50.000 0.00 0.00 0.00 3.28
128 129 2.939103 CCTGATAAGCTCGAACCCAAAG 59.061 50.000 0.00 0.00 0.00 2.77
129 130 2.352960 CTGATAAGCTCGAACCCAAAGC 59.647 50.000 0.00 0.00 36.27 3.51
130 131 1.327764 GATAAGCTCGAACCCAAAGCG 59.672 52.381 0.00 0.00 40.95 4.68
131 132 0.672401 TAAGCTCGAACCCAAAGCGG 60.672 55.000 0.00 0.00 40.95 5.52
132 133 2.358247 GCTCGAACCCAAAGCGGA 60.358 61.111 0.00 0.00 36.56 5.54
133 134 1.745489 GCTCGAACCCAAAGCGGAT 60.745 57.895 0.00 0.00 36.56 4.18
134 135 0.461339 GCTCGAACCCAAAGCGGATA 60.461 55.000 0.00 0.00 36.56 2.59
135 136 2.010043 GCTCGAACCCAAAGCGGATAA 61.010 52.381 0.00 0.00 36.56 1.75
136 137 2.352388 CTCGAACCCAAAGCGGATAAA 58.648 47.619 0.00 0.00 36.56 1.40
137 138 2.943033 CTCGAACCCAAAGCGGATAAAT 59.057 45.455 0.00 0.00 36.56 1.40
138 139 2.680841 TCGAACCCAAAGCGGATAAATG 59.319 45.455 0.00 0.00 36.56 2.32
139 140 2.794631 CGAACCCAAAGCGGATAAATGC 60.795 50.000 0.00 0.00 36.56 3.56
140 141 1.846007 ACCCAAAGCGGATAAATGCA 58.154 45.000 0.00 0.00 36.56 3.96
141 142 2.387757 ACCCAAAGCGGATAAATGCAT 58.612 42.857 0.00 0.00 36.56 3.96
142 143 2.362077 ACCCAAAGCGGATAAATGCATC 59.638 45.455 0.00 0.00 36.56 3.91
143 144 2.624838 CCCAAAGCGGATAAATGCATCT 59.375 45.455 0.00 0.00 36.56 2.90
144 145 3.068590 CCCAAAGCGGATAAATGCATCTT 59.931 43.478 0.00 0.00 36.56 2.40
145 146 4.293415 CCAAAGCGGATAAATGCATCTTC 58.707 43.478 0.00 0.00 36.56 2.87
146 147 4.202040 CCAAAGCGGATAAATGCATCTTCA 60.202 41.667 0.00 0.00 36.56 3.02
147 148 5.508489 CCAAAGCGGATAAATGCATCTTCAT 60.508 40.000 0.00 0.00 36.56 2.57
148 149 6.294120 CCAAAGCGGATAAATGCATCTTCATA 60.294 38.462 0.00 0.00 36.56 2.15
149 150 6.492007 AAGCGGATAAATGCATCTTCATAG 57.508 37.500 0.00 0.00 0.00 2.23
150 151 4.940046 AGCGGATAAATGCATCTTCATAGG 59.060 41.667 0.00 0.00 0.00 2.57
151 152 4.937620 GCGGATAAATGCATCTTCATAGGA 59.062 41.667 0.00 0.00 0.00 2.94
152 153 5.587844 GCGGATAAATGCATCTTCATAGGAT 59.412 40.000 0.00 0.00 0.00 3.24
153 154 6.763135 GCGGATAAATGCATCTTCATAGGATA 59.237 38.462 0.00 0.00 0.00 2.59
154 155 7.254590 GCGGATAAATGCATCTTCATAGGATAC 60.255 40.741 0.00 0.00 0.00 2.24
155 156 7.225538 CGGATAAATGCATCTTCATAGGATACC 59.774 40.741 0.00 0.00 37.17 2.73
156 157 7.500559 GGATAAATGCATCTTCATAGGATACCC 59.499 40.741 0.00 0.00 37.17 3.69
157 158 5.848286 AATGCATCTTCATAGGATACCCA 57.152 39.130 0.00 0.00 33.88 4.51
158 159 5.848286 ATGCATCTTCATAGGATACCCAA 57.152 39.130 0.00 0.00 33.88 4.12
159 160 5.645056 TGCATCTTCATAGGATACCCAAA 57.355 39.130 0.00 0.00 33.88 3.28
160 161 6.012337 TGCATCTTCATAGGATACCCAAAA 57.988 37.500 0.00 0.00 33.88 2.44
161 162 6.613699 TGCATCTTCATAGGATACCCAAAAT 58.386 36.000 0.00 0.00 33.88 1.82
162 163 7.754624 TGCATCTTCATAGGATACCCAAAATA 58.245 34.615 0.00 0.00 33.88 1.40
163 164 7.884877 TGCATCTTCATAGGATACCCAAAATAG 59.115 37.037 0.00 0.00 33.88 1.73
164 165 7.885399 GCATCTTCATAGGATACCCAAAATAGT 59.115 37.037 0.00 0.00 33.88 2.12
165 166 9.799106 CATCTTCATAGGATACCCAAAATAGTT 57.201 33.333 0.00 0.00 33.88 2.24
166 167 9.799106 ATCTTCATAGGATACCCAAAATAGTTG 57.201 33.333 0.00 0.00 33.88 3.16
167 168 8.217799 TCTTCATAGGATACCCAAAATAGTTGG 58.782 37.037 0.00 0.00 39.25 3.77
178 179 6.262056 CCAAAATAGTTGGGTATACCTCCT 57.738 41.667 21.25 15.55 41.11 3.69
179 180 7.383156 CCAAAATAGTTGGGTATACCTCCTA 57.617 40.000 21.25 16.98 41.11 2.94
180 181 7.808218 CCAAAATAGTTGGGTATACCTCCTAA 58.192 38.462 21.25 9.12 41.11 2.69
181 182 8.445588 CCAAAATAGTTGGGTATACCTCCTAAT 58.554 37.037 21.25 9.18 41.11 1.73
182 183 9.862149 CAAAATAGTTGGGTATACCTCCTAATT 57.138 33.333 21.25 13.73 41.11 1.40
184 185 8.808240 AATAGTTGGGTATACCTCCTAATTCA 57.192 34.615 21.25 5.56 41.11 2.57
185 186 6.749036 AGTTGGGTATACCTCCTAATTCAG 57.251 41.667 21.25 0.00 41.11 3.02
186 187 6.449956 AGTTGGGTATACCTCCTAATTCAGA 58.550 40.000 21.25 0.00 41.11 3.27
187 188 7.082972 AGTTGGGTATACCTCCTAATTCAGAT 58.917 38.462 21.25 0.00 41.11 2.90
188 189 7.235812 AGTTGGGTATACCTCCTAATTCAGATC 59.764 40.741 21.25 0.33 41.11 2.75
189 190 6.875469 TGGGTATACCTCCTAATTCAGATCT 58.125 40.000 21.25 0.00 41.11 2.75
190 191 6.726299 TGGGTATACCTCCTAATTCAGATCTG 59.274 42.308 21.25 17.07 41.11 2.90
191 192 6.954684 GGGTATACCTCCTAATTCAGATCTGA 59.045 42.308 21.67 21.67 35.30 3.27
192 193 7.455008 GGGTATACCTCCTAATTCAGATCTGAA 59.545 40.741 34.14 34.14 44.07 3.02
207 208 8.777865 TCAGATCTGAAAGTAAAAATGATCGT 57.222 30.769 23.17 0.00 36.53 3.73
208 209 9.219603 TCAGATCTGAAAGTAAAAATGATCGTT 57.780 29.630 23.17 0.00 36.53 3.85
209 210 9.831737 CAGATCTGAAAGTAAAAATGATCGTTT 57.168 29.630 18.34 7.10 35.41 3.60
223 224 7.793927 AATGATCGTTTCTAGAAAAGGATCC 57.206 36.000 32.34 23.38 39.37 3.36
224 225 6.546428 TGATCGTTTCTAGAAAAGGATCCT 57.454 37.500 32.34 9.02 39.37 3.24
225 226 6.947464 TGATCGTTTCTAGAAAAGGATCCTT 58.053 36.000 32.34 21.89 39.37 3.36
226 227 7.394816 TGATCGTTTCTAGAAAAGGATCCTTT 58.605 34.615 32.34 30.41 46.90 3.11
227 228 7.549488 TGATCGTTTCTAGAAAAGGATCCTTTC 59.451 37.037 34.45 26.45 44.50 2.62
228 229 7.005709 TCGTTTCTAGAAAAGGATCCTTTCT 57.994 36.000 34.45 30.34 44.50 2.52
229 230 7.097834 TCGTTTCTAGAAAAGGATCCTTTCTC 58.902 38.462 34.45 29.42 44.50 2.87
230 231 6.035112 CGTTTCTAGAAAAGGATCCTTTCTCG 59.965 42.308 34.45 25.95 44.50 4.04
231 232 6.852420 TTCTAGAAAAGGATCCTTTCTCGA 57.148 37.500 34.45 27.29 44.50 4.04
232 233 6.458232 TCTAGAAAAGGATCCTTTCTCGAG 57.542 41.667 34.45 30.93 44.50 4.04
233 234 4.479786 AGAAAAGGATCCTTTCTCGAGG 57.520 45.455 34.45 0.00 44.50 4.63
245 246 7.005709 TCCTTTCTCGAGGAATAGTTTTTCT 57.994 36.000 13.56 0.00 42.75 2.52
246 247 7.097834 TCCTTTCTCGAGGAATAGTTTTTCTC 58.902 38.462 13.56 0.00 42.75 2.87
247 248 6.874134 CCTTTCTCGAGGAATAGTTTTTCTCA 59.126 38.462 13.56 0.00 39.25 3.27
248 249 7.387948 CCTTTCTCGAGGAATAGTTTTTCTCAA 59.612 37.037 13.56 0.00 39.25 3.02
249 250 8.671384 TTTCTCGAGGAATAGTTTTTCTCAAA 57.329 30.769 13.56 0.00 33.53 2.69
250 251 8.671384 TTCTCGAGGAATAGTTTTTCTCAAAA 57.329 30.769 13.56 0.00 0.00 2.44
251 252 8.311650 TCTCGAGGAATAGTTTTTCTCAAAAG 57.688 34.615 13.56 0.00 32.32 2.27
252 253 8.148351 TCTCGAGGAATAGTTTTTCTCAAAAGA 58.852 33.333 13.56 0.25 32.32 2.52
253 254 8.671384 TCGAGGAATAGTTTTTCTCAAAAGAA 57.329 30.769 2.96 0.00 39.78 2.52
254 255 9.284968 TCGAGGAATAGTTTTTCTCAAAAGAAT 57.715 29.630 2.96 0.00 41.12 2.40
255 256 9.899226 CGAGGAATAGTTTTTCTCAAAAGAATT 57.101 29.630 2.96 0.00 41.12 2.17
261 262 9.971922 ATAGTTTTTCTCAAAAGAATTGAGTGG 57.028 29.630 15.54 0.00 44.58 4.00
262 263 8.066612 AGTTTTTCTCAAAAGAATTGAGTGGA 57.933 30.769 15.54 3.80 44.58 4.02
263 264 8.531146 AGTTTTTCTCAAAAGAATTGAGTGGAA 58.469 29.630 15.54 8.40 44.58 3.53
264 265 8.811378 GTTTTTCTCAAAAGAATTGAGTGGAAG 58.189 33.333 15.54 0.00 44.58 3.46
265 266 7.880160 TTTCTCAAAAGAATTGAGTGGAAGA 57.120 32.000 15.54 0.00 44.58 2.87
266 267 7.880160 TTCTCAAAAGAATTGAGTGGAAGAA 57.120 32.000 15.54 2.33 44.58 2.52
267 268 8.469309 TTCTCAAAAGAATTGAGTGGAAGAAT 57.531 30.769 15.54 0.00 44.58 2.40
268 269 8.469309 TCTCAAAAGAATTGAGTGGAAGAATT 57.531 30.769 15.54 0.00 44.58 2.17
269 270 8.355169 TCTCAAAAGAATTGAGTGGAAGAATTG 58.645 33.333 15.54 0.00 44.58 2.32
348 349 3.502211 CCACATCCACACCTTCTGTTAAC 59.498 47.826 0.00 0.00 0.00 2.01
393 394 7.878127 ACAAGTTCTTATTTTTCCAGATCGAGA 59.122 33.333 0.00 0.00 0.00 4.04
419 420 2.040544 CCCACACGAATCTGGTGCC 61.041 63.158 0.00 0.00 38.98 5.01
481 482 1.657181 CGCCGTTGTGTTCTTTGCC 60.657 57.895 0.00 0.00 0.00 4.52
482 483 1.435515 GCCGTTGTGTTCTTTGCCA 59.564 52.632 0.00 0.00 0.00 4.92
512 513 1.142688 AAGGTGGGCTTGGTCCAGAT 61.143 55.000 0.00 0.00 38.31 2.90
524 525 2.771943 TGGTCCAGATCCCTACATTCAC 59.228 50.000 0.00 0.00 0.00 3.18
567 568 9.237187 CTCAGTTCTAGAGCATGGATTATACTA 57.763 37.037 9.43 0.00 0.00 1.82
599 600 6.695278 GTCTTATTCTTCCAGATCGAGTGAAG 59.305 42.308 8.78 8.78 36.42 3.02
630 631 3.329542 TTGTCCCCTCCATCGCTGC 62.330 63.158 0.00 0.00 0.00 5.25
667 668 4.274459 AGAGTCTGATTTGTGTTGCTTGAC 59.726 41.667 0.00 0.00 0.00 3.18
771 772 2.548480 GCTAGCGGCCTGGTAAATTTAG 59.452 50.000 0.00 0.00 34.27 1.85
870 1384 4.490606 TCCCCCGGCCTCTGCATA 62.491 66.667 0.00 0.00 40.13 3.14
906 1423 6.317391 ACCTTATCTGCTGATTTGCTAAGTTC 59.683 38.462 11.65 0.00 34.32 3.01
1122 1663 3.871463 GCTTTCTCTCCATGGAGCTTGAA 60.871 47.826 33.39 29.12 41.71 2.69
1247 1788 1.467713 GGAGGATGTCGTCGACAAGTC 60.468 57.143 30.05 22.89 45.96 3.01
1259 1800 2.879462 CAAGTCCCTCGTACGCGC 60.879 66.667 11.24 0.00 38.14 6.86
1416 1963 4.394712 GTGGCTGCTAGGCGTGGT 62.395 66.667 0.00 0.00 44.78 4.16
1451 1998 6.068010 TCGATGGTATTGCTTTTAATCCCAT 58.932 36.000 0.00 0.00 38.86 4.00
1803 2361 5.163478 GGATGAAAGGCAGCTTATCAACAAT 60.163 40.000 0.00 0.00 32.29 2.71
2027 2631 9.959721 ACAATATGAGTATATATGTTTGACCCC 57.040 33.333 0.00 0.00 0.00 4.95
2028 2632 9.396022 CAATATGAGTATATATGTTTGACCCCC 57.604 37.037 0.00 0.00 0.00 5.40
2134 2739 8.404000 CAATTGGTCTAAGAAATTCATCTCAGG 58.596 37.037 0.00 0.00 0.00 3.86
2206 2812 9.915629 TGTACCAAATAATACACCAAAATGTTC 57.084 29.630 0.00 0.00 33.85 3.18
2247 2853 4.733077 TCTTTCTTTATCCCAACCCACA 57.267 40.909 0.00 0.00 0.00 4.17
2290 2896 2.568090 GCATCGTGCACCAAAGGG 59.432 61.111 12.15 0.00 44.26 3.95
2350 3053 4.278310 TCTATTTCCCCTTTTAGCCTTGC 58.722 43.478 0.00 0.00 0.00 4.01
2353 3056 2.694616 TCCCCTTTTAGCCTTGCTTT 57.305 45.000 0.00 0.00 40.44 3.51
2355 3058 1.338105 CCCCTTTTAGCCTTGCTTTGC 60.338 52.381 0.00 0.00 40.44 3.68
2380 3083 9.482627 GCAACTTACTATCAGCAGAATATACTT 57.517 33.333 0.00 0.00 0.00 2.24
2387 3090 8.153550 ACTATCAGCAGAATATACTTGAAAGGG 58.846 37.037 0.00 0.00 0.00 3.95
2438 3143 1.378531 GTTCATCAGCGGCCATACAA 58.621 50.000 2.24 0.00 0.00 2.41
2458 3163 6.999705 ACAATATATTGGTGGGCAAATCAT 57.000 33.333 25.45 1.27 41.96 2.45
2599 3576 9.944376 GTTTCTGAATATGTGCCCTTATAGATA 57.056 33.333 0.00 0.00 0.00 1.98
2630 3607 1.340893 CCCATATATTCATGCGGCCCA 60.341 52.381 0.00 0.00 0.00 5.36
2659 3636 5.784578 TGCGATGTGTATAGACCTTACAT 57.215 39.130 0.00 0.00 34.91 2.29
2871 3848 4.027437 ACCTCTTTCTACTGATGACTCCC 58.973 47.826 0.00 0.00 0.00 4.30
2967 3944 7.353525 TGATATATTGAAGAAATGTGGTGGGT 58.646 34.615 0.00 0.00 0.00 4.51
3039 4016 1.340889 TGAAACCAAAGCATCAGTGGC 59.659 47.619 0.00 0.00 35.72 5.01
3092 4069 9.924650 GGACTAACAGAAGATAACAGTTTAGAA 57.075 33.333 0.00 0.00 0.00 2.10
3107 4084 5.814705 CAGTTTAGAAGAGATGCGGAGAATT 59.185 40.000 0.00 0.00 0.00 2.17
3108 4085 6.314896 CAGTTTAGAAGAGATGCGGAGAATTT 59.685 38.462 0.00 0.00 0.00 1.82
3138 4115 8.497910 TTTCAGCTATTATGATCTACCTCCTT 57.502 34.615 0.00 0.00 0.00 3.36
3141 4118 9.775539 TCAGCTATTATGATCTACCTCCTTATT 57.224 33.333 0.00 0.00 0.00 1.40
3186 4163 8.998277 TCTATGTATATACCCAGAAGATAGCC 57.002 38.462 10.38 0.00 0.00 3.93
3260 4237 5.829924 CCATAATGGAAATCAAGGCACTAGT 59.170 40.000 0.00 0.00 40.96 2.57
3275 4252 3.550842 GCACTAGTCTGTTTTTGCTTGGG 60.551 47.826 0.00 0.00 0.00 4.12
3348 4325 5.023514 TGATCCAATAGGCCAGGTATCTA 57.976 43.478 5.01 0.00 33.74 1.98
3389 4366 3.686016 GGTTCTGGACCTTATCTGCAAA 58.314 45.455 0.00 0.00 45.55 3.68
3419 4396 7.862372 TCACATGAAGCAAAGTTTGTTAATCTC 59.138 33.333 16.70 6.25 0.00 2.75
3421 4398 8.078596 ACATGAAGCAAAGTTTGTTAATCTCTC 58.921 33.333 16.70 5.26 0.00 3.20
3430 4407 4.422073 TTGTTAATCTCTCGGATGGCAT 57.578 40.909 0.00 0.00 34.45 4.40
3432 4409 5.545063 TGTTAATCTCTCGGATGGCATTA 57.455 39.130 0.00 0.00 34.45 1.90
3442 4422 4.385825 TCGGATGGCATTAGGAATAACAC 58.614 43.478 0.00 0.00 0.00 3.32
3452 4432 8.416329 GGCATTAGGAATAACACATCTTCAAAT 58.584 33.333 0.00 0.00 0.00 2.32
3509 4492 3.290710 TGAAGATCATAAAGCCAAGCCC 58.709 45.455 0.00 0.00 0.00 5.19
3550 4533 4.801330 TGTCACGAGTGAGGTCAATTAT 57.199 40.909 6.13 0.00 40.75 1.28
3568 4551 6.039717 TCAATTATTATCTTTCCACCTGCTGC 59.960 38.462 0.00 0.00 0.00 5.25
3633 4616 6.600427 TGTACTTGATCTGTCGGACTGTAATA 59.400 38.462 9.88 0.00 0.00 0.98
3670 4653 0.035881 CTGCAGCTTCACCTCAAGGA 59.964 55.000 0.00 0.00 38.94 3.36
3713 4696 1.499870 AGGTACCTAGGTCTAGCAGGG 59.500 57.143 20.32 0.00 33.48 4.45
3782 4765 5.732331 TGGAGGTATTGGATCTTGGAAAT 57.268 39.130 0.00 0.00 0.00 2.17
3806 4789 8.929260 ATAATGATGAACTAGATGAATTGCCA 57.071 30.769 0.00 0.00 0.00 4.92
3854 4837 9.553064 AGATTAATCTACCTAAATGCTTGTCTG 57.447 33.333 16.50 0.00 34.85 3.51
3867 4853 2.643551 CTTGTCTGTGTGAGGTGGTTT 58.356 47.619 0.00 0.00 0.00 3.27
3913 4902 3.846588 ACATCCATAGAAGTGTTGAGGGT 59.153 43.478 0.00 0.00 0.00 4.34
3922 4911 1.150536 TGTTGAGGGTGGTCTTGGC 59.849 57.895 0.00 0.00 0.00 4.52
3923 4912 1.352622 TGTTGAGGGTGGTCTTGGCT 61.353 55.000 0.00 0.00 0.00 4.75
3930 4919 0.322008 GGTGGTCTTGGCTTCTCTGG 60.322 60.000 0.00 0.00 0.00 3.86
3931 4920 0.957888 GTGGTCTTGGCTTCTCTGGC 60.958 60.000 0.00 0.00 0.00 4.85
3986 4975 2.742530 GCTGAGGGAGCTTGAGATTCAG 60.743 54.545 0.00 0.00 45.21 3.02
4038 5027 2.286418 GGTTTTGTGAAGTCTCTGTGCG 60.286 50.000 0.00 0.00 0.00 5.34
4053 5042 0.657840 GTGCGGCCTACATCACATTC 59.342 55.000 0.00 0.00 0.00 2.67
4064 5053 6.115446 CCTACATCACATTCAAAGCCTAAGA 58.885 40.000 0.00 0.00 0.00 2.10
4070 5059 7.149569 TCACATTCAAAGCCTAAGAATTGAG 57.850 36.000 0.00 0.00 33.71 3.02
4076 5065 5.301551 TCAAAGCCTAAGAATTGAGTGCAAA 59.698 36.000 0.00 0.00 37.59 3.68
4158 5147 3.498397 ACATCTCCGTGAATTTGTGTCAC 59.502 43.478 0.00 0.00 41.66 3.67
4169 5158 1.177895 TTGTGTCACGCATGCCCATT 61.178 50.000 13.15 0.00 0.00 3.16
4170 5159 0.322008 TGTGTCACGCATGCCCATTA 60.322 50.000 13.15 0.00 0.00 1.90
4198 5187 1.098050 GCACTGCAAGGGTGGATAAG 58.902 55.000 6.69 0.00 41.80 1.73
4200 5189 2.359900 CACTGCAAGGGTGGATAAGAC 58.640 52.381 0.00 0.00 39.30 3.01
4206 5195 2.496070 CAAGGGTGGATAAGACGAGACA 59.504 50.000 0.00 0.00 0.00 3.41
4221 5210 1.403679 GAGACACCTCACATCTCTCGG 59.596 57.143 0.00 0.00 39.24 4.63
4231 5220 1.283613 ACATCTCTCGGACCTCTCTGT 59.716 52.381 0.00 0.00 0.00 3.41
4238 5227 4.087182 TCTCGGACCTCTCTGTGTTATTT 58.913 43.478 0.00 0.00 0.00 1.40
4250 5239 6.206048 TCTCTGTGTTATTTCTCACGTCAGTA 59.794 38.462 0.00 0.00 37.38 2.74
4279 5268 1.457346 CAGCAGGAGGACATGGAAAC 58.543 55.000 0.00 0.00 0.00 2.78
4305 5295 1.295423 GGGTTGCTGGCTCTTCGTA 59.705 57.895 0.00 0.00 0.00 3.43
4319 5309 5.010213 GGCTCTTCGTAGTCTCTGGATAAAT 59.990 44.000 0.00 0.00 0.00 1.40
4393 5383 0.681175 ATGGTTGACTTTGGCTTGGC 59.319 50.000 0.00 0.00 0.00 4.52
4416 5406 3.011818 TGTGGATCAGCAGCACAAATAG 58.988 45.455 0.00 0.00 0.00 1.73
4621 5611 2.972505 AGCCGCGGTGTTTCACAG 60.973 61.111 28.70 0.00 35.86 3.66
4623 5613 2.954753 GCCGCGGTGTTTCACAGAG 61.955 63.158 28.70 0.00 35.86 3.35
4624 5614 1.300620 CCGCGGTGTTTCACAGAGA 60.301 57.895 19.50 0.00 35.86 3.10
4627 5617 1.853319 CGGTGTTTCACAGAGACGC 59.147 57.895 2.41 0.00 35.86 5.19
4630 5620 1.538204 GGTGTTTCACAGAGACGCAGA 60.538 52.381 4.09 0.00 35.86 4.26
4632 5622 1.136110 TGTTTCACAGAGACGCAGACA 59.864 47.619 0.00 0.00 0.00 3.41
4633 5623 2.224042 TGTTTCACAGAGACGCAGACAT 60.224 45.455 0.00 0.00 0.00 3.06
4636 5626 1.613437 TCACAGAGACGCAGACATTCA 59.387 47.619 0.00 0.00 0.00 2.57
4637 5627 2.035832 TCACAGAGACGCAGACATTCAA 59.964 45.455 0.00 0.00 0.00 2.69
4644 5652 7.094634 ACAGAGACGCAGACATTCAAATTTATT 60.095 33.333 0.00 0.00 0.00 1.40
4650 5658 5.170270 GCAGACATTCAAATTTATTCGAGCG 59.830 40.000 0.00 0.00 0.00 5.03
4655 5663 2.101125 CAAATTTATTCGAGCGTGCGG 58.899 47.619 0.00 0.00 0.00 5.69
4659 5667 2.717580 TTATTCGAGCGTGCGGATAT 57.282 45.000 1.79 0.00 32.23 1.63
4663 5671 1.730902 CGAGCGTGCGGATATCAGG 60.731 63.158 4.83 0.00 0.00 3.86
4682 5690 2.996985 AGGTACTCATGCTGCCTGA 58.003 52.632 7.39 7.39 0.00 3.86
4684 5692 0.462759 GGTACTCATGCTGCCTGACC 60.463 60.000 3.38 1.48 0.00 4.02
4685 5693 0.539051 GTACTCATGCTGCCTGACCT 59.461 55.000 3.38 0.00 0.00 3.85
4688 5972 1.202976 ACTCATGCTGCCTGACCTTTT 60.203 47.619 3.38 0.00 0.00 2.27
4702 5986 0.788391 CCTTTTCTCGTGCACGTACC 59.212 55.000 35.74 0.00 40.80 3.34
4715 6019 2.597305 GCACGTACCTATGTGTTTCTCG 59.403 50.000 6.55 0.00 43.38 4.04
4734 6038 0.591659 GTGACCGCCTGACCTTTTTC 59.408 55.000 0.00 0.00 0.00 2.29
4759 6067 6.715718 CCTTTCTGCATGGATTTGATCTCTAT 59.284 38.462 0.00 0.00 0.00 1.98
4771 6079 8.257306 GGATTTGATCTCTATATCTCCCAAGAC 58.743 40.741 0.00 0.00 33.32 3.01
4777 6085 3.821600 TCTATATCTCCCAAGACGCTCAC 59.178 47.826 0.00 0.00 33.32 3.51
4789 6097 1.253034 GACGCTCACGATGACGATTTC 59.747 52.381 0.00 0.00 43.93 2.17
4809 6117 4.897509 TCTGTGAGGACAAGATGAATGT 57.102 40.909 0.00 0.00 0.00 2.71
4814 6122 5.408299 TGTGAGGACAAGATGAATGTTAACG 59.592 40.000 0.26 0.00 0.00 3.18
4815 6123 5.408604 GTGAGGACAAGATGAATGTTAACGT 59.591 40.000 0.26 0.00 0.00 3.99
4819 6127 7.712797 AGGACAAGATGAATGTTAACGTTTTT 58.287 30.769 14.11 5.37 0.00 1.94
4845 6165 3.250762 TGCGTTGAGGAGAACTGATTTTG 59.749 43.478 0.00 0.00 0.00 2.44
4850 6170 4.389374 TGAGGAGAACTGATTTTGTGACC 58.611 43.478 0.00 0.00 0.00 4.02
4867 6187 0.247736 ACCCAGAGCGACTCACATTC 59.752 55.000 9.09 0.00 32.06 2.67
4870 6190 1.638133 CAGAGCGACTCACATTCCAG 58.362 55.000 9.09 0.00 32.06 3.86
4871 6191 1.067283 CAGAGCGACTCACATTCCAGT 60.067 52.381 9.09 0.00 32.06 4.00
4872 6192 1.067283 AGAGCGACTCACATTCCAGTG 60.067 52.381 9.09 0.00 40.85 3.66
4873 6193 0.671781 AGCGACTCACATTCCAGTGC 60.672 55.000 0.00 0.00 39.35 4.40
4898 6230 7.866393 GCTCTCAGGTATGTATTACGTATTTGT 59.134 37.037 0.00 0.00 0.00 2.83
4901 6233 9.395707 CTCAGGTATGTATTACGTATTTGTCTC 57.604 37.037 0.00 0.00 0.00 3.36
4937 6666 7.364585 CCATCTTTCTTTCTCCATGTCTAGAGT 60.365 40.741 0.00 0.00 0.00 3.24
4938 6667 6.929625 TCTTTCTTTCTCCATGTCTAGAGTG 58.070 40.000 0.00 0.00 0.00 3.51
4959 6688 2.095059 GCAGCTTGTCGTTCCATTGATT 60.095 45.455 0.00 0.00 0.00 2.57
4961 6690 4.379394 GCAGCTTGTCGTTCCATTGATTAA 60.379 41.667 0.00 0.00 0.00 1.40
4966 6695 6.397831 TTGTCGTTCCATTGATTAACTACG 57.602 37.500 0.00 0.00 0.00 3.51
4970 6699 4.804139 CGTTCCATTGATTAACTACGCTCT 59.196 41.667 0.00 0.00 0.00 4.09
4972 6701 4.693283 TCCATTGATTAACTACGCTCTGG 58.307 43.478 0.00 0.00 0.00 3.86
4973 6702 4.161565 TCCATTGATTAACTACGCTCTGGT 59.838 41.667 0.00 0.00 0.00 4.00
4980 6717 1.486211 ACTACGCTCTGGTGGCTATT 58.514 50.000 0.00 0.00 0.00 1.73
4990 6727 5.127031 GCTCTGGTGGCTATTTGGAAAATAA 59.873 40.000 0.00 0.00 0.00 1.40
5049 6788 8.763356 GCATAAGTATCTGATCAGAAAAGTGAG 58.237 37.037 28.40 16.92 41.36 3.51
5158 6899 5.968167 TGTAGAAGGATAATTGGTAGTGGGT 59.032 40.000 0.00 0.00 0.00 4.51
5164 6905 6.078664 AGGATAATTGGTAGTGGGTAGAGAG 58.921 44.000 0.00 0.00 0.00 3.20
5230 7004 1.665161 GGTGACAAGTACTCCACGTCG 60.665 57.143 0.00 0.00 0.00 5.12
5231 7005 1.265095 GTGACAAGTACTCCACGTCGA 59.735 52.381 0.00 0.00 0.00 4.20
5232 7006 1.265095 TGACAAGTACTCCACGTCGAC 59.735 52.381 5.18 5.18 0.00 4.20
5233 7007 0.236711 ACAAGTACTCCACGTCGACG 59.763 55.000 34.58 34.58 46.33 5.12
5247 7021 4.908266 CGTCGACGTCATACAGTTTATC 57.092 45.455 29.08 0.00 34.11 1.75
5248 7022 4.585364 CGTCGACGTCATACAGTTTATCT 58.415 43.478 29.08 0.00 34.11 1.98
5249 7023 4.665292 CGTCGACGTCATACAGTTTATCTC 59.335 45.833 29.08 0.00 34.11 2.75
5253 7027 7.907045 GTCGACGTCATACAGTTTATCTCTTTA 59.093 37.037 17.16 0.00 0.00 1.85
5255 7031 8.682895 CGACGTCATACAGTTTATCTCTTTATG 58.317 37.037 17.16 0.00 31.06 1.90
5311 7088 6.903419 AGCACTAATTTCACTGCTCTAAAAC 58.097 36.000 0.00 0.00 34.90 2.43
5316 7093 8.376270 ACTAATTTCACTGCTCTAAAACCTACT 58.624 33.333 0.00 0.00 0.00 2.57
5353 7130 2.760634 TGATGAAACCGCTAAGCTGA 57.239 45.000 0.00 0.00 0.00 4.26
5354 7131 3.266510 TGATGAAACCGCTAAGCTGAT 57.733 42.857 0.00 0.00 0.00 2.90
5369 7169 7.145323 GCTAAGCTGATTTGTGAAGGTTTTAA 58.855 34.615 0.00 0.00 33.88 1.52
5374 7174 6.587608 GCTGATTTGTGAAGGTTTTAATCTGG 59.412 38.462 0.00 0.00 0.00 3.86
5375 7175 6.454795 TGATTTGTGAAGGTTTTAATCTGGC 58.545 36.000 0.00 0.00 0.00 4.85
5403 7204 3.455910 AGCAAGATTCATGTAGGTGCCTA 59.544 43.478 0.00 0.00 0.00 3.93
5405 7206 4.453819 GCAAGATTCATGTAGGTGCCTATC 59.546 45.833 0.83 0.00 0.00 2.08
5408 7209 4.285517 AGATTCATGTAGGTGCCTATCAGG 59.714 45.833 0.83 4.26 38.80 3.86
5426 7230 6.857437 ATCAGGGAAAAAGGTATTTTCTGG 57.143 37.500 11.97 4.44 37.65 3.86
5434 7238 7.819415 GGAAAAAGGTATTTTCTGGGAATTCTG 59.181 37.037 5.23 0.00 37.65 3.02
5620 7438 9.474920 CAGGAAAATTGTCTTATTTTGCAGTAA 57.525 29.630 13.29 0.00 43.84 2.24
5669 7487 4.094294 GTGCGCTTCTGGTTTTGATATACA 59.906 41.667 9.73 0.00 0.00 2.29
5688 7508 3.602608 ACATCCTATTAGCATGGAGGGT 58.397 45.455 0.00 0.00 36.15 4.34
5693 7513 6.584471 TCCTATTAGCATGGAGGGTTTTTA 57.416 37.500 0.00 0.00 0.00 1.52
5757 7577 6.959361 TCTGTTTAGTTGAGAAAGTTGCATC 58.041 36.000 0.00 0.00 0.00 3.91
5758 7578 6.767902 TCTGTTTAGTTGAGAAAGTTGCATCT 59.232 34.615 0.00 0.00 0.00 2.90
5759 7579 6.728200 TGTTTAGTTGAGAAAGTTGCATCTG 58.272 36.000 0.00 0.00 0.00 2.90
5760 7580 5.947228 TTAGTTGAGAAAGTTGCATCTGG 57.053 39.130 0.00 0.00 0.00 3.86
5761 7581 4.090761 AGTTGAGAAAGTTGCATCTGGA 57.909 40.909 0.00 0.00 0.00 3.86
5762 7582 4.464008 AGTTGAGAAAGTTGCATCTGGAA 58.536 39.130 0.00 0.00 0.00 3.53
5763 7583 5.075493 AGTTGAGAAAGTTGCATCTGGAAT 58.925 37.500 0.00 0.00 0.00 3.01
5764 7584 5.537674 AGTTGAGAAAGTTGCATCTGGAATT 59.462 36.000 0.00 0.00 0.00 2.17
5791 7611 3.282021 TGCTTCATTCATTGGTCTAGCC 58.718 45.455 0.00 0.00 37.90 3.93
5810 7630 2.223340 GCCTACACGGAATGATGCAAAG 60.223 50.000 0.00 0.00 33.16 2.77
5811 7631 3.270027 CCTACACGGAATGATGCAAAGA 58.730 45.455 0.00 0.00 33.16 2.52
5812 7632 3.063997 CCTACACGGAATGATGCAAAGAC 59.936 47.826 0.00 0.00 33.16 3.01
5813 7633 2.783135 ACACGGAATGATGCAAAGACT 58.217 42.857 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.875536 TGTCATCTCAACGGAATTACATGG 59.124 41.667 0.00 0.00 0.00 3.66
2 3 4.572389 GCTGTCATCTCAACGGAATTACAT 59.428 41.667 0.00 0.00 0.00 2.29
3 4 3.932710 GCTGTCATCTCAACGGAATTACA 59.067 43.478 0.00 0.00 0.00 2.41
4 5 3.000322 CGCTGTCATCTCAACGGAATTAC 60.000 47.826 0.00 0.00 0.00 1.89
6 7 2.002586 CGCTGTCATCTCAACGGAATT 58.997 47.619 0.00 0.00 0.00 2.17
7 8 1.066858 ACGCTGTCATCTCAACGGAAT 60.067 47.619 0.00 0.00 32.27 3.01
8 9 0.317160 ACGCTGTCATCTCAACGGAA 59.683 50.000 0.00 0.00 32.27 4.30
10 11 1.854743 CATACGCTGTCATCTCAACGG 59.145 52.381 0.00 0.00 32.27 4.44
11 12 2.797491 TCATACGCTGTCATCTCAACG 58.203 47.619 0.00 0.00 33.87 4.10
12 13 4.177026 AGTTCATACGCTGTCATCTCAAC 58.823 43.478 0.00 0.00 0.00 3.18
13 14 4.456280 AGTTCATACGCTGTCATCTCAA 57.544 40.909 0.00 0.00 0.00 3.02
14 15 5.507985 CCATAGTTCATACGCTGTCATCTCA 60.508 44.000 0.00 0.00 0.00 3.27
15 16 4.920340 CCATAGTTCATACGCTGTCATCTC 59.080 45.833 0.00 0.00 0.00 2.75
16 17 4.342378 ACCATAGTTCATACGCTGTCATCT 59.658 41.667 0.00 0.00 0.00 2.90
17 18 4.621991 ACCATAGTTCATACGCTGTCATC 58.378 43.478 0.00 0.00 0.00 2.92
18 19 4.672587 ACCATAGTTCATACGCTGTCAT 57.327 40.909 0.00 0.00 0.00 3.06
20 21 6.270815 TCTAAACCATAGTTCATACGCTGTC 58.729 40.000 0.00 0.00 34.19 3.51
21 22 6.096423 TCTCTAAACCATAGTTCATACGCTGT 59.904 38.462 0.00 0.00 34.19 4.40
22 23 6.504398 TCTCTAAACCATAGTTCATACGCTG 58.496 40.000 0.00 0.00 34.19 5.18
38 39 6.862711 ACAACAGCTTAGGTTTCTCTAAAC 57.137 37.500 0.00 0.00 43.58 2.01
39 40 7.875327 AAACAACAGCTTAGGTTTCTCTAAA 57.125 32.000 1.61 0.00 0.00 1.85
40 41 7.492352 GAAACAACAGCTTAGGTTTCTCTAA 57.508 36.000 19.21 0.00 43.42 2.10
45 46 8.920509 TTTTAAGAAACAACAGCTTAGGTTTC 57.079 30.769 19.00 19.00 45.76 2.78
46 47 8.528643 ACTTTTAAGAAACAACAGCTTAGGTTT 58.471 29.630 6.18 6.18 36.27 3.27
47 48 8.063200 ACTTTTAAGAAACAACAGCTTAGGTT 57.937 30.769 0.00 0.00 0.00 3.50
48 49 7.640597 ACTTTTAAGAAACAACAGCTTAGGT 57.359 32.000 0.00 0.00 0.00 3.08
49 50 8.807581 CAAACTTTTAAGAAACAACAGCTTAGG 58.192 33.333 0.00 0.00 0.00 2.69
50 51 8.807581 CCAAACTTTTAAGAAACAACAGCTTAG 58.192 33.333 0.00 0.00 0.00 2.18
51 52 7.762159 CCCAAACTTTTAAGAAACAACAGCTTA 59.238 33.333 0.00 0.00 0.00 3.09
52 53 6.593770 CCCAAACTTTTAAGAAACAACAGCTT 59.406 34.615 0.00 0.00 0.00 3.74
53 54 6.106003 CCCAAACTTTTAAGAAACAACAGCT 58.894 36.000 0.00 0.00 0.00 4.24
54 55 5.293324 CCCCAAACTTTTAAGAAACAACAGC 59.707 40.000 0.00 0.00 0.00 4.40
55 56 5.293324 GCCCCAAACTTTTAAGAAACAACAG 59.707 40.000 0.00 0.00 0.00 3.16
56 57 5.046231 AGCCCCAAACTTTTAAGAAACAACA 60.046 36.000 0.00 0.00 0.00 3.33
57 58 5.293324 CAGCCCCAAACTTTTAAGAAACAAC 59.707 40.000 0.00 0.00 0.00 3.32
58 59 5.423886 CAGCCCCAAACTTTTAAGAAACAA 58.576 37.500 0.00 0.00 0.00 2.83
59 60 4.682050 GCAGCCCCAAACTTTTAAGAAACA 60.682 41.667 0.00 0.00 0.00 2.83
60 61 3.807622 GCAGCCCCAAACTTTTAAGAAAC 59.192 43.478 0.00 0.00 0.00 2.78
61 62 3.491792 CGCAGCCCCAAACTTTTAAGAAA 60.492 43.478 0.00 0.00 0.00 2.52
62 63 2.035321 CGCAGCCCCAAACTTTTAAGAA 59.965 45.455 0.00 0.00 0.00 2.52
63 64 1.611491 CGCAGCCCCAAACTTTTAAGA 59.389 47.619 0.00 0.00 0.00 2.10
64 65 1.611491 TCGCAGCCCCAAACTTTTAAG 59.389 47.619 0.00 0.00 0.00 1.85
65 66 1.338655 GTCGCAGCCCCAAACTTTTAA 59.661 47.619 0.00 0.00 0.00 1.52
66 67 0.955905 GTCGCAGCCCCAAACTTTTA 59.044 50.000 0.00 0.00 0.00 1.52
67 68 1.739667 GTCGCAGCCCCAAACTTTT 59.260 52.632 0.00 0.00 0.00 2.27
68 69 2.551912 CGTCGCAGCCCCAAACTTT 61.552 57.895 0.00 0.00 0.00 2.66
69 70 2.978010 CGTCGCAGCCCCAAACTT 60.978 61.111 0.00 0.00 0.00 2.66
72 73 2.813226 ATAAGCGTCGCAGCCCCAAA 62.813 55.000 21.09 0.00 38.01 3.28
73 74 3.323758 ATAAGCGTCGCAGCCCCAA 62.324 57.895 21.09 0.00 38.01 4.12
74 75 3.781307 ATAAGCGTCGCAGCCCCA 61.781 61.111 21.09 0.00 38.01 4.96
75 76 3.272334 CATAAGCGTCGCAGCCCC 61.272 66.667 21.09 0.00 38.01 5.80
76 77 2.511600 ACATAAGCGTCGCAGCCC 60.512 61.111 21.09 0.00 38.01 5.19
77 78 1.358725 TTCACATAAGCGTCGCAGCC 61.359 55.000 21.09 0.00 38.01 4.85
78 79 0.442310 TTTCACATAAGCGTCGCAGC 59.558 50.000 21.09 0.00 37.41 5.25
79 80 2.873170 TTTTCACATAAGCGTCGCAG 57.127 45.000 21.09 8.63 0.00 5.18
80 81 2.546368 ACTTTTTCACATAAGCGTCGCA 59.454 40.909 21.09 0.00 0.00 5.10
81 82 3.183237 ACTTTTTCACATAAGCGTCGC 57.817 42.857 9.80 9.80 0.00 5.19
82 83 6.183359 GCTAAAACTTTTTCACATAAGCGTCG 60.183 38.462 0.00 0.00 0.00 5.12
83 84 6.087687 GGCTAAAACTTTTTCACATAAGCGTC 59.912 38.462 0.00 0.00 29.52 5.19
84 85 5.918576 GGCTAAAACTTTTTCACATAAGCGT 59.081 36.000 0.00 0.00 29.52 5.07
85 86 6.088085 CAGGCTAAAACTTTTTCACATAAGCG 59.912 38.462 0.00 0.00 29.52 4.68
86 87 7.145323 TCAGGCTAAAACTTTTTCACATAAGC 58.855 34.615 0.00 0.00 0.00 3.09
90 91 7.814587 GCTTATCAGGCTAAAACTTTTTCACAT 59.185 33.333 0.00 0.00 0.00 3.21
91 92 7.014230 AGCTTATCAGGCTAAAACTTTTTCACA 59.986 33.333 0.00 0.00 38.36 3.58
92 93 7.371159 AGCTTATCAGGCTAAAACTTTTTCAC 58.629 34.615 0.00 0.00 38.36 3.18
93 94 7.524717 AGCTTATCAGGCTAAAACTTTTTCA 57.475 32.000 0.00 0.00 38.36 2.69
94 95 6.743172 CGAGCTTATCAGGCTAAAACTTTTTC 59.257 38.462 0.00 0.00 40.40 2.29
95 96 6.430000 TCGAGCTTATCAGGCTAAAACTTTTT 59.570 34.615 0.00 0.00 40.40 1.94
96 97 5.938125 TCGAGCTTATCAGGCTAAAACTTTT 59.062 36.000 0.00 0.00 40.40 2.27
97 98 5.488341 TCGAGCTTATCAGGCTAAAACTTT 58.512 37.500 0.00 0.00 40.40 2.66
98 99 5.086104 TCGAGCTTATCAGGCTAAAACTT 57.914 39.130 0.00 0.00 40.40 2.66
99 100 4.737855 TCGAGCTTATCAGGCTAAAACT 57.262 40.909 0.00 0.00 40.40 2.66
100 101 4.034163 GGTTCGAGCTTATCAGGCTAAAAC 59.966 45.833 0.00 0.00 40.40 2.43
101 102 4.189231 GGTTCGAGCTTATCAGGCTAAAA 58.811 43.478 0.00 0.00 40.40 1.52
102 103 3.431766 GGGTTCGAGCTTATCAGGCTAAA 60.432 47.826 0.00 0.00 40.40 1.85
103 104 2.102588 GGGTTCGAGCTTATCAGGCTAA 59.897 50.000 0.00 0.00 40.40 3.09
104 105 1.687123 GGGTTCGAGCTTATCAGGCTA 59.313 52.381 0.00 0.00 40.40 3.93
105 106 0.466124 GGGTTCGAGCTTATCAGGCT 59.534 55.000 0.00 0.00 43.26 4.58
106 107 0.178068 TGGGTTCGAGCTTATCAGGC 59.822 55.000 0.00 0.00 0.00 4.85
107 108 2.691409 TTGGGTTCGAGCTTATCAGG 57.309 50.000 0.00 0.00 0.00 3.86
108 109 2.352960 GCTTTGGGTTCGAGCTTATCAG 59.647 50.000 0.00 0.00 33.72 2.90
109 110 2.356135 GCTTTGGGTTCGAGCTTATCA 58.644 47.619 0.00 0.00 33.72 2.15
110 111 1.327764 CGCTTTGGGTTCGAGCTTATC 59.672 52.381 0.00 0.00 34.33 1.75
111 112 1.369625 CGCTTTGGGTTCGAGCTTAT 58.630 50.000 0.00 0.00 34.33 1.73
112 113 0.672401 CCGCTTTGGGTTCGAGCTTA 60.672 55.000 0.00 0.00 34.33 3.09
113 114 1.966451 CCGCTTTGGGTTCGAGCTT 60.966 57.895 0.00 0.00 34.33 3.74
114 115 2.185310 ATCCGCTTTGGGTTCGAGCT 62.185 55.000 0.00 0.00 38.76 4.09
115 116 0.461339 TATCCGCTTTGGGTTCGAGC 60.461 55.000 0.00 0.00 38.76 5.03
116 117 2.018542 TTATCCGCTTTGGGTTCGAG 57.981 50.000 0.00 0.00 38.76 4.04
117 118 2.476126 TTTATCCGCTTTGGGTTCGA 57.524 45.000 0.00 0.00 38.76 3.71
118 119 2.794631 GCATTTATCCGCTTTGGGTTCG 60.795 50.000 0.00 0.00 38.76 3.95
119 120 2.165437 TGCATTTATCCGCTTTGGGTTC 59.835 45.455 0.00 0.00 38.76 3.62
120 121 2.175202 TGCATTTATCCGCTTTGGGTT 58.825 42.857 0.00 0.00 38.76 4.11
121 122 1.846007 TGCATTTATCCGCTTTGGGT 58.154 45.000 0.00 0.00 38.76 4.51
122 123 2.624838 AGATGCATTTATCCGCTTTGGG 59.375 45.455 0.00 0.00 38.76 4.12
123 124 3.996150 AGATGCATTTATCCGCTTTGG 57.004 42.857 0.00 0.00 40.09 3.28
124 125 4.923893 TGAAGATGCATTTATCCGCTTTG 58.076 39.130 0.00 0.00 0.00 2.77
125 126 5.779529 ATGAAGATGCATTTATCCGCTTT 57.220 34.783 0.00 0.00 0.00 3.51
126 127 5.413833 CCTATGAAGATGCATTTATCCGCTT 59.586 40.000 0.00 0.00 0.00 4.68
127 128 4.940046 CCTATGAAGATGCATTTATCCGCT 59.060 41.667 0.00 0.00 0.00 5.52
128 129 4.937620 TCCTATGAAGATGCATTTATCCGC 59.062 41.667 0.00 0.00 0.00 5.54
129 130 7.225538 GGTATCCTATGAAGATGCATTTATCCG 59.774 40.741 0.00 0.00 0.00 4.18
130 131 7.500559 GGGTATCCTATGAAGATGCATTTATCC 59.499 40.741 0.00 0.00 0.00 2.59
131 132 8.049117 TGGGTATCCTATGAAGATGCATTTATC 58.951 37.037 0.00 0.28 0.00 1.75
132 133 7.932134 TGGGTATCCTATGAAGATGCATTTAT 58.068 34.615 0.00 0.00 0.00 1.40
133 134 7.328404 TGGGTATCCTATGAAGATGCATTTA 57.672 36.000 0.00 0.00 0.00 1.40
134 135 6.204852 TGGGTATCCTATGAAGATGCATTT 57.795 37.500 0.00 0.00 0.00 2.32
135 136 5.848286 TGGGTATCCTATGAAGATGCATT 57.152 39.130 0.00 0.00 0.00 3.56
136 137 5.848286 TTGGGTATCCTATGAAGATGCAT 57.152 39.130 0.00 0.00 0.00 3.96
137 138 5.645056 TTTGGGTATCCTATGAAGATGCA 57.355 39.130 0.00 0.00 0.00 3.96
138 139 7.885399 ACTATTTTGGGTATCCTATGAAGATGC 59.115 37.037 0.00 0.00 0.00 3.91
139 140 9.799106 AACTATTTTGGGTATCCTATGAAGATG 57.201 33.333 0.00 0.00 0.00 2.90
140 141 9.799106 CAACTATTTTGGGTATCCTATGAAGAT 57.201 33.333 0.00 0.00 0.00 2.40
141 142 8.217799 CCAACTATTTTGGGTATCCTATGAAGA 58.782 37.037 0.00 0.00 35.96 2.87
142 143 8.396272 CCAACTATTTTGGGTATCCTATGAAG 57.604 38.462 0.00 0.00 35.96 3.02
155 156 6.262056 AGGAGGTATACCCAACTATTTTGG 57.738 41.667 18.65 0.00 39.25 3.28
156 157 9.862149 AATTAGGAGGTATACCCAACTATTTTG 57.138 33.333 18.65 0.00 36.42 2.44
158 159 9.232882 TGAATTAGGAGGTATACCCAACTATTT 57.767 33.333 18.65 17.45 36.42 1.40
159 160 8.808240 TGAATTAGGAGGTATACCCAACTATT 57.192 34.615 18.65 12.45 36.42 1.73
160 161 8.239478 TCTGAATTAGGAGGTATACCCAACTAT 58.761 37.037 18.65 4.62 36.42 2.12
161 162 7.598248 TCTGAATTAGGAGGTATACCCAACTA 58.402 38.462 18.65 14.53 36.42 2.24
162 163 6.449956 TCTGAATTAGGAGGTATACCCAACT 58.550 40.000 18.65 15.48 36.42 3.16
163 164 6.742559 TCTGAATTAGGAGGTATACCCAAC 57.257 41.667 18.65 8.96 36.42 3.77
164 165 7.235606 CAGATCTGAATTAGGAGGTATACCCAA 59.764 40.741 18.34 8.12 36.42 4.12
165 166 6.726299 CAGATCTGAATTAGGAGGTATACCCA 59.274 42.308 18.34 5.74 36.42 4.51
166 167 6.954684 TCAGATCTGAATTAGGAGGTATACCC 59.045 42.308 23.17 9.80 36.53 3.69
167 168 8.423906 TTCAGATCTGAATTAGGAGGTATACC 57.576 38.462 30.05 14.54 43.90 2.73
181 182 9.219603 ACGATCATTTTTACTTTCAGATCTGAA 57.780 29.630 30.05 30.05 46.72 3.02
182 183 8.777865 ACGATCATTTTTACTTTCAGATCTGA 57.222 30.769 21.67 21.67 37.91 3.27
183 184 9.831737 AAACGATCATTTTTACTTTCAGATCTG 57.168 29.630 17.07 17.07 0.00 2.90
197 198 8.678199 GGATCCTTTTCTAGAAACGATCATTTT 58.322 33.333 31.81 14.54 37.69 1.82
198 199 8.049721 AGGATCCTTTTCTAGAAACGATCATTT 58.950 33.333 31.81 22.52 37.69 2.32
199 200 7.569240 AGGATCCTTTTCTAGAAACGATCATT 58.431 34.615 31.81 23.95 37.69 2.57
200 201 7.130681 AGGATCCTTTTCTAGAAACGATCAT 57.869 36.000 31.81 27.85 37.69 2.45
201 202 6.546428 AGGATCCTTTTCTAGAAACGATCA 57.454 37.500 31.81 16.40 37.69 2.92
202 203 7.766738 AGAAAGGATCCTTTTCTAGAAACGATC 59.233 37.037 34.72 27.83 45.16 3.69
203 204 7.625469 AGAAAGGATCCTTTTCTAGAAACGAT 58.375 34.615 34.72 19.96 45.16 3.73
204 205 7.005709 AGAAAGGATCCTTTTCTAGAAACGA 57.994 36.000 34.72 16.78 45.16 3.85
205 206 6.035112 CGAGAAAGGATCCTTTTCTAGAAACG 59.965 42.308 34.72 24.85 45.16 3.60
206 207 7.097834 TCGAGAAAGGATCCTTTTCTAGAAAC 58.902 38.462 34.72 21.43 45.16 2.78
207 208 7.241042 TCGAGAAAGGATCCTTTTCTAGAAA 57.759 36.000 34.72 13.99 45.16 2.52
208 209 6.127310 CCTCGAGAAAGGATCCTTTTCTAGAA 60.127 42.308 34.72 19.45 45.16 2.10
209 210 5.361285 CCTCGAGAAAGGATCCTTTTCTAGA 59.639 44.000 34.72 30.18 45.16 2.43
210 211 5.361285 TCCTCGAGAAAGGATCCTTTTCTAG 59.639 44.000 34.72 28.58 45.16 2.43
211 212 5.269991 TCCTCGAGAAAGGATCCTTTTCTA 58.730 41.667 34.72 23.55 45.16 2.10
212 213 4.097418 TCCTCGAGAAAGGATCCTTTTCT 58.903 43.478 34.72 29.85 45.16 2.52
213 214 4.473477 TCCTCGAGAAAGGATCCTTTTC 57.527 45.455 34.72 28.80 45.16 2.29
214 215 4.910458 TTCCTCGAGAAAGGATCCTTTT 57.090 40.909 34.72 25.02 44.87 2.27
215 216 5.663556 ACTATTCCTCGAGAAAGGATCCTTT 59.336 40.000 34.90 34.90 44.87 3.11
216 217 5.212745 ACTATTCCTCGAGAAAGGATCCTT 58.787 41.667 21.89 21.89 44.87 3.36
217 218 4.810345 ACTATTCCTCGAGAAAGGATCCT 58.190 43.478 15.71 9.02 44.87 3.24
218 219 5.538849 AACTATTCCTCGAGAAAGGATCC 57.461 43.478 15.71 2.48 44.87 3.36
219 220 7.766738 AGAAAAACTATTCCTCGAGAAAGGATC 59.233 37.037 15.71 0.00 44.87 3.36
220 221 7.625469 AGAAAAACTATTCCTCGAGAAAGGAT 58.375 34.615 15.71 0.00 44.87 3.24
221 222 7.005709 AGAAAAACTATTCCTCGAGAAAGGA 57.994 36.000 15.71 0.00 43.84 3.36
222 223 6.874134 TGAGAAAAACTATTCCTCGAGAAAGG 59.126 38.462 15.71 0.00 38.21 3.11
223 224 7.891183 TGAGAAAAACTATTCCTCGAGAAAG 57.109 36.000 15.71 7.80 38.21 2.62
224 225 8.671384 TTTGAGAAAAACTATTCCTCGAGAAA 57.329 30.769 15.71 0.00 38.21 2.52
225 226 8.671384 TTTTGAGAAAAACTATTCCTCGAGAA 57.329 30.769 15.71 6.89 39.32 2.87
226 227 8.148351 TCTTTTGAGAAAAACTATTCCTCGAGA 58.852 33.333 15.71 0.00 0.00 4.04
227 228 8.311650 TCTTTTGAGAAAAACTATTCCTCGAG 57.688 34.615 5.13 5.13 0.00 4.04
228 229 8.671384 TTCTTTTGAGAAAAACTATTCCTCGA 57.329 30.769 0.00 0.00 0.00 4.04
229 230 9.899226 AATTCTTTTGAGAAAAACTATTCCTCG 57.101 29.630 0.00 0.00 0.00 4.63
235 236 9.971922 CCACTCAATTCTTTTGAGAAAAACTAT 57.028 29.630 19.21 0.00 46.57 2.12
236 237 9.184523 TCCACTCAATTCTTTTGAGAAAAACTA 57.815 29.630 19.21 0.00 46.57 2.24
237 238 8.066612 TCCACTCAATTCTTTTGAGAAAAACT 57.933 30.769 19.21 0.00 46.57 2.66
238 239 8.702163 TTCCACTCAATTCTTTTGAGAAAAAC 57.298 30.769 19.21 0.00 46.57 2.43
239 240 8.748412 TCTTCCACTCAATTCTTTTGAGAAAAA 58.252 29.630 19.21 10.01 46.57 1.94
240 241 8.292444 TCTTCCACTCAATTCTTTTGAGAAAA 57.708 30.769 19.21 10.27 46.57 2.29
241 242 7.880160 TCTTCCACTCAATTCTTTTGAGAAA 57.120 32.000 19.21 10.54 46.57 2.52
242 243 7.880160 TTCTTCCACTCAATTCTTTTGAGAA 57.120 32.000 19.21 5.63 46.57 2.87
243 244 8.355169 CAATTCTTCCACTCAATTCTTTTGAGA 58.645 33.333 19.21 0.00 46.57 3.27
245 246 8.236585 TCAATTCTTCCACTCAATTCTTTTGA 57.763 30.769 0.00 0.00 0.00 2.69
246 247 8.139989 ACTCAATTCTTCCACTCAATTCTTTTG 58.860 33.333 0.00 0.00 0.00 2.44
247 248 8.139989 CACTCAATTCTTCCACTCAATTCTTTT 58.860 33.333 0.00 0.00 0.00 2.27
248 249 7.503566 TCACTCAATTCTTCCACTCAATTCTTT 59.496 33.333 0.00 0.00 0.00 2.52
249 250 7.000472 TCACTCAATTCTTCCACTCAATTCTT 59.000 34.615 0.00 0.00 0.00 2.52
250 251 6.429385 GTCACTCAATTCTTCCACTCAATTCT 59.571 38.462 0.00 0.00 0.00 2.40
251 252 6.348868 GGTCACTCAATTCTTCCACTCAATTC 60.349 42.308 0.00 0.00 0.00 2.17
252 253 5.474876 GGTCACTCAATTCTTCCACTCAATT 59.525 40.000 0.00 0.00 0.00 2.32
253 254 5.006386 GGTCACTCAATTCTTCCACTCAAT 58.994 41.667 0.00 0.00 0.00 2.57
254 255 4.389374 GGTCACTCAATTCTTCCACTCAA 58.611 43.478 0.00 0.00 0.00 3.02
255 256 3.244561 GGGTCACTCAATTCTTCCACTCA 60.245 47.826 0.00 0.00 0.00 3.41
256 257 3.008485 AGGGTCACTCAATTCTTCCACTC 59.992 47.826 0.00 0.00 0.00 3.51
257 258 2.982488 AGGGTCACTCAATTCTTCCACT 59.018 45.455 0.00 0.00 0.00 4.00
258 259 3.077359 CAGGGTCACTCAATTCTTCCAC 58.923 50.000 0.00 0.00 0.00 4.02
259 260 2.553028 GCAGGGTCACTCAATTCTTCCA 60.553 50.000 0.00 0.00 0.00 3.53
260 261 2.087646 GCAGGGTCACTCAATTCTTCC 58.912 52.381 0.00 0.00 0.00 3.46
261 262 3.064900 AGCAGGGTCACTCAATTCTTC 57.935 47.619 0.00 0.00 0.00 2.87
262 263 3.620966 GCTAGCAGGGTCACTCAATTCTT 60.621 47.826 10.63 0.00 0.00 2.52
263 264 2.093235 GCTAGCAGGGTCACTCAATTCT 60.093 50.000 10.63 0.00 0.00 2.40
264 265 2.284190 GCTAGCAGGGTCACTCAATTC 58.716 52.381 10.63 0.00 0.00 2.17
265 266 1.406069 CGCTAGCAGGGTCACTCAATT 60.406 52.381 16.45 0.00 0.00 2.32
266 267 0.176680 CGCTAGCAGGGTCACTCAAT 59.823 55.000 16.45 0.00 0.00 2.57
267 268 1.591703 CGCTAGCAGGGTCACTCAA 59.408 57.895 16.45 0.00 0.00 3.02
268 269 2.351244 CCGCTAGCAGGGTCACTCA 61.351 63.158 16.45 0.00 0.00 3.41
269 270 2.496817 CCGCTAGCAGGGTCACTC 59.503 66.667 16.45 0.00 0.00 3.51
348 349 4.439305 TGTAATTTAGCAAAGCAGCAGG 57.561 40.909 0.00 0.00 36.85 4.85
380 381 2.092323 TCGCTTCTCTCGATCTGGAAA 58.908 47.619 0.00 0.00 0.00 3.13
381 382 1.402259 GTCGCTTCTCTCGATCTGGAA 59.598 52.381 0.00 0.00 38.29 3.53
382 383 1.018148 GTCGCTTCTCTCGATCTGGA 58.982 55.000 0.00 0.00 38.29 3.86
393 394 0.389948 GATTCGTGTGGGTCGCTTCT 60.390 55.000 0.00 0.00 0.00 2.85
461 462 0.928451 GCAAAGAACACAACGGCGAC 60.928 55.000 16.62 0.00 0.00 5.19
462 463 1.353804 GCAAAGAACACAACGGCGA 59.646 52.632 16.62 0.00 0.00 5.54
463 464 1.657181 GGCAAAGAACACAACGGCG 60.657 57.895 4.80 4.80 0.00 6.46
512 513 2.841266 TCCAAATCGGTGAATGTAGGGA 59.159 45.455 0.00 0.00 35.57 4.20
524 525 3.753272 ACTGAGTTGTCAATCCAAATCGG 59.247 43.478 8.22 8.22 46.15 4.18
599 600 4.527157 GACAAGATGGCGCGCTGC 62.527 66.667 32.29 19.72 45.38 5.25
630 631 1.480137 AGACTCTCAAGCAAGATCCGG 59.520 52.381 0.00 0.00 0.00 5.14
667 668 0.322008 GTTCCACTGCCCCTCTTGAG 60.322 60.000 0.00 0.00 0.00 3.02
771 772 7.209475 AGAGCAGAATAGTAAGAAAGATGAGC 58.791 38.462 0.00 0.00 0.00 4.26
880 1394 6.889198 ACTTAGCAAATCAGCAGATAAGGTA 58.111 36.000 0.00 0.00 36.85 3.08
1071 1612 2.587473 TTGACGCGCTTGTGCAGA 60.587 55.556 5.73 0.00 39.64 4.26
1173 1714 0.601311 AGAGCTTGACTTGCGTGTCC 60.601 55.000 6.47 0.00 36.21 4.02
1259 1800 0.179000 AGGCTGCTGAATACCTTCGG 59.821 55.000 0.00 0.00 40.22 4.30
1416 1963 4.693283 CAATACCATCGAGCTTGTTCCTA 58.307 43.478 0.00 0.00 0.00 2.94
1612 2168 1.547901 GGTCTTTCCCAACCCTCCAAG 60.548 57.143 0.00 0.00 0.00 3.61
1803 2361 5.405935 TGTTCTCGAGGAATTCATGAAGA 57.594 39.130 14.54 3.63 36.24 2.87
2247 2853 9.036671 CACCGTTTAAATCTTTGTTTTAATGGT 57.963 29.630 8.41 8.41 44.45 3.55
2290 2896 5.941647 TGGTGTATTAAGAGCAAAAGGGTAC 59.058 40.000 0.00 0.00 0.00 3.34
2350 3053 6.486253 TTCTGCTGATAGTAAGTTGCAAAG 57.514 37.500 0.00 0.00 0.00 2.77
2353 3056 8.642432 AGTATATTCTGCTGATAGTAAGTTGCA 58.358 33.333 0.00 0.00 0.00 4.08
2380 3083 9.703892 CAAATTTTACATGACATTACCCTTTCA 57.296 29.630 0.00 0.00 0.00 2.69
2387 3090 9.774742 GGAGACTCAAATTTTACATGACATTAC 57.225 33.333 0.00 0.00 0.00 1.89
2517 3451 9.746711 CGAAAATCTAATCTTAAGAACTGTGTG 57.253 33.333 9.71 0.00 0.00 3.82
2518 3452 9.706691 TCGAAAATCTAATCTTAAGAACTGTGT 57.293 29.630 9.71 0.00 0.00 3.72
2534 3511 4.098044 AGGCGTCTCAATCTCGAAAATCTA 59.902 41.667 0.00 0.00 0.00 1.98
2540 3517 1.173913 TCAGGCGTCTCAATCTCGAA 58.826 50.000 0.00 0.00 0.00 3.71
2599 3576 7.933577 CGCATGAATATATGGGTGGAACTATAT 59.066 37.037 0.00 0.00 36.56 0.86
2630 3607 3.865745 GTCTATACACATCGCAAAGCTGT 59.134 43.478 0.00 0.00 0.00 4.40
2639 3616 9.343103 GTATCAATGTAAGGTCTATACACATCG 57.657 37.037 0.00 0.00 36.19 3.84
2716 3693 2.173519 AGTTGATGCCTTCCCACAATG 58.826 47.619 0.00 0.00 0.00 2.82
2750 3727 3.002759 GCCGACTGCCTTGATTATTCTTC 59.997 47.826 0.00 0.00 0.00 2.87
2871 3848 7.736447 ATATTCTTTTATGGAAGAGCCTTCG 57.264 36.000 8.31 0.00 37.01 3.79
2942 3919 7.353525 ACCCACCACATTTCTTCAATATATCA 58.646 34.615 0.00 0.00 0.00 2.15
3039 4016 2.617308 CAAGGGACTGCAGCAGAATATG 59.383 50.000 29.70 15.68 40.86 1.78
3050 4027 2.045536 CCAGAGCCAAGGGACTGC 60.046 66.667 0.00 0.00 40.86 4.40
3092 4069 7.050377 TGAAAGATAAAATTCTCCGCATCTCT 58.950 34.615 0.00 0.00 0.00 3.10
3161 4138 8.566109 TGGCTATCTTCTGGGTATATACATAGA 58.434 37.037 14.70 13.13 0.00 1.98
3173 4150 4.637387 ATCAATCTGGCTATCTTCTGGG 57.363 45.455 0.00 0.00 0.00 4.45
3239 4216 6.115446 CAGACTAGTGCCTTGATTTCCATTA 58.885 40.000 0.00 0.00 0.00 1.90
3240 4217 4.946157 CAGACTAGTGCCTTGATTTCCATT 59.054 41.667 0.00 0.00 0.00 3.16
3254 4231 3.632145 ACCCAAGCAAAAACAGACTAGTG 59.368 43.478 0.00 0.00 0.00 2.74
3260 4237 7.787028 AGTAATTTAACCCAAGCAAAAACAGA 58.213 30.769 0.00 0.00 0.00 3.41
3348 4325 3.118408 ACCATATCATGTACACGGCAAGT 60.118 43.478 0.00 0.00 0.00 3.16
3389 4366 5.663456 ACAAACTTTGCTTCATGTGACAAT 58.337 33.333 1.14 0.00 0.00 2.71
3419 4396 4.452455 GTGTTATTCCTAATGCCATCCGAG 59.548 45.833 0.00 0.00 0.00 4.63
3421 4398 4.133820 TGTGTTATTCCTAATGCCATCCG 58.866 43.478 0.00 0.00 0.00 4.18
3442 4422 6.129393 CGGCGAACATTACTATTTGAAGATG 58.871 40.000 0.00 0.00 0.00 2.90
3452 4432 2.995258 GGACAAACGGCGAACATTACTA 59.005 45.455 16.62 0.00 0.00 1.82
3498 4481 0.398381 TTTGTGAGGGGCTTGGCTTT 60.398 50.000 0.00 0.00 0.00 3.51
3509 4492 7.095899 CGTGACATACTCATGATATTTGTGAGG 60.096 40.741 13.89 0.00 42.75 3.86
3550 4533 3.682718 GCTAGCAGCAGGTGGAAAGATAA 60.683 47.826 10.63 0.00 41.89 1.75
3633 4616 0.327000 AGGCTGCTACCTTCTCCCAT 60.327 55.000 0.00 0.00 36.28 4.00
3660 4643 2.566833 TGTCCAACATCCTTGAGGTG 57.433 50.000 0.00 0.00 36.34 4.00
3670 4653 6.996879 CCTTAGATGAATCAGATGTCCAACAT 59.003 38.462 0.00 0.00 42.43 2.71
3681 4664 7.007723 AGACCTAGGTACCTTAGATGAATCAG 58.992 42.308 22.11 6.89 0.00 2.90
3689 4672 4.104420 CCTGCTAGACCTAGGTACCTTAGA 59.896 50.000 22.11 0.24 33.87 2.10
3713 4696 2.928116 CGGGAGTTCACTAATTTCGGTC 59.072 50.000 0.00 0.00 0.00 4.79
3782 4765 8.929260 ATGGCAATTCATCTAGTTCATCATTA 57.071 30.769 0.00 0.00 0.00 1.90
3791 4774 4.080129 ACAGTGGATGGCAATTCATCTAGT 60.080 41.667 6.98 2.21 42.22 2.57
3806 4789 8.641498 ATCTTCTCAAATTACAAACAGTGGAT 57.359 30.769 0.00 0.00 0.00 3.41
3847 4830 2.332063 AACCACCTCACACAGACAAG 57.668 50.000 0.00 0.00 0.00 3.16
3850 4833 2.213499 CTGAAACCACCTCACACAGAC 58.787 52.381 0.00 0.00 0.00 3.51
3854 4837 0.947244 CAGCTGAAACCACCTCACAC 59.053 55.000 8.42 0.00 0.00 3.82
3867 4853 0.107263 TTCTGCAACACACCAGCTGA 60.107 50.000 17.39 0.00 34.99 4.26
3913 4902 1.376466 GCCAGAGAAGCCAAGACCA 59.624 57.895 0.00 0.00 0.00 4.02
3922 4911 2.036217 TGTGCAAAAATGGCCAGAGAAG 59.964 45.455 13.05 1.84 0.00 2.85
3923 4912 2.037901 TGTGCAAAAATGGCCAGAGAA 58.962 42.857 13.05 0.00 0.00 2.87
3930 4919 2.159327 AGCTCTTGTGCAAAAATGGC 57.841 45.000 0.00 0.00 34.99 4.40
3931 4920 2.803956 CCAAGCTCTTGTGCAAAAATGG 59.196 45.455 8.60 0.00 38.85 3.16
3936 4925 0.822811 TTGCCAAGCTCTTGTGCAAA 59.177 45.000 23.36 13.99 44.99 3.68
3986 4975 6.015434 ACAAATCCAAACTACCATCCTTGAAC 60.015 38.462 0.00 0.00 0.00 3.18
4038 5027 2.099756 GGCTTTGAATGTGATGTAGGCC 59.900 50.000 0.00 0.00 0.00 5.19
4053 5042 4.771590 TGCACTCAATTCTTAGGCTTTG 57.228 40.909 0.00 0.00 0.00 2.77
4064 5053 5.537674 AGTTTCTCTGGATTTGCACTCAATT 59.462 36.000 0.00 0.00 31.33 2.32
4070 5059 5.444663 AAGAAGTTTCTCTGGATTTGCAC 57.555 39.130 0.00 0.00 36.28 4.57
4076 5065 7.056635 TCAGTTCAAAAGAAGTTTCTCTGGAT 58.943 34.615 0.00 0.00 36.28 3.41
4121 5110 0.618458 GATGTACAGGAGGCACCCAA 59.382 55.000 0.33 0.00 40.05 4.12
4158 5147 2.032550 CAGAGAGTTTAATGGGCATGCG 59.967 50.000 12.44 0.00 0.00 4.73
4169 5158 2.550855 CCCTTGCAGTGCAGAGAGTTTA 60.551 50.000 18.81 0.00 40.61 2.01
4170 5159 1.602311 CCTTGCAGTGCAGAGAGTTT 58.398 50.000 18.81 0.00 40.61 2.66
4198 5187 2.088423 AGAGATGTGAGGTGTCTCGTC 58.912 52.381 0.00 0.00 42.40 4.20
4200 5189 2.842208 GAGAGATGTGAGGTGTCTCG 57.158 55.000 0.00 0.00 42.40 4.04
4206 5195 0.333312 AGGTCCGAGAGATGTGAGGT 59.667 55.000 0.00 0.00 0.00 3.85
4221 5210 4.859798 CGTGAGAAATAACACAGAGAGGTC 59.140 45.833 0.00 0.00 36.91 3.85
4231 5220 6.751157 TCCTTTACTGACGTGAGAAATAACA 58.249 36.000 9.65 0.00 0.00 2.41
4238 5227 3.552273 GCACTTCCTTTACTGACGTGAGA 60.552 47.826 9.65 0.00 34.84 3.27
4250 5239 0.251077 CCTCCTGCTGCACTTCCTTT 60.251 55.000 0.00 0.00 0.00 3.11
4296 5286 5.502153 TTTATCCAGAGACTACGAAGAGC 57.498 43.478 0.00 0.00 0.00 4.09
4298 5288 6.771267 TGCTATTTATCCAGAGACTACGAAGA 59.229 38.462 0.00 0.00 0.00 2.87
4305 5295 4.101741 GTGGGTGCTATTTATCCAGAGACT 59.898 45.833 0.00 0.00 0.00 3.24
4319 5309 1.394618 GTTGTGTTTGGTGGGTGCTA 58.605 50.000 0.00 0.00 0.00 3.49
4393 5383 0.607217 TTGTGCTGCTGATCCACAGG 60.607 55.000 12.51 0.00 45.82 4.00
4416 5406 2.860136 GCAAAGCTCCTTGTTCAAACAC 59.140 45.455 0.00 0.00 38.92 3.32
4426 5416 2.352805 CCCTCGGCAAAGCTCCTT 59.647 61.111 0.00 0.00 0.00 3.36
4559 5549 2.632377 CTCGCTCCACCACAATACAAT 58.368 47.619 0.00 0.00 0.00 2.71
4560 5550 1.338674 CCTCGCTCCACCACAATACAA 60.339 52.381 0.00 0.00 0.00 2.41
4603 5593 3.240606 CTGTGAAACACCGCGGCTG 62.241 63.158 28.58 24.04 45.67 4.85
4607 5597 1.853319 GTCTCTGTGAAACACCGCG 59.147 57.895 0.00 0.00 45.67 6.46
4614 5604 2.820059 ATGTCTGCGTCTCTGTGAAA 57.180 45.000 0.00 0.00 0.00 2.69
4615 5605 2.035832 TGAATGTCTGCGTCTCTGTGAA 59.964 45.455 0.00 0.00 0.00 3.18
4616 5606 1.613437 TGAATGTCTGCGTCTCTGTGA 59.387 47.619 0.00 0.00 0.00 3.58
4621 5611 6.409185 CGAATAAATTTGAATGTCTGCGTCTC 59.591 38.462 0.00 0.00 0.00 3.36
4623 5613 6.247903 TCGAATAAATTTGAATGTCTGCGTC 58.752 36.000 0.00 0.00 0.00 5.19
4624 5614 6.176975 TCGAATAAATTTGAATGTCTGCGT 57.823 33.333 0.00 0.00 0.00 5.24
4627 5617 6.193410 CACGCTCGAATAAATTTGAATGTCTG 59.807 38.462 0.00 0.00 30.21 3.51
4630 5620 4.793216 GCACGCTCGAATAAATTTGAATGT 59.207 37.500 0.00 0.00 30.21 2.71
4632 5622 4.028383 CGCACGCTCGAATAAATTTGAAT 58.972 39.130 0.00 0.00 30.21 2.57
4633 5623 3.412654 CGCACGCTCGAATAAATTTGAA 58.587 40.909 0.00 0.00 30.21 2.69
4636 5626 2.004017 TCCGCACGCTCGAATAAATTT 58.996 42.857 0.00 0.00 0.00 1.82
4637 5627 1.647346 TCCGCACGCTCGAATAAATT 58.353 45.000 0.00 0.00 0.00 1.82
4644 5652 1.282875 CTGATATCCGCACGCTCGA 59.717 57.895 0.00 0.00 0.00 4.04
4650 5658 2.229302 GAGTACCTCCTGATATCCGCAC 59.771 54.545 0.00 0.00 0.00 5.34
4655 5663 4.620332 GCAGCATGAGTACCTCCTGATATC 60.620 50.000 0.00 0.00 39.69 1.63
4659 5667 0.826715 GCAGCATGAGTACCTCCTGA 59.173 55.000 0.00 0.00 39.69 3.86
4663 5671 0.826715 TCAGGCAGCATGAGTACCTC 59.173 55.000 5.43 0.00 39.69 3.85
4681 5689 1.454653 GTACGTGCACGAGAAAAGGTC 59.545 52.381 42.94 17.72 43.02 3.85
4682 5690 1.494824 GTACGTGCACGAGAAAAGGT 58.505 50.000 42.94 21.82 43.02 3.50
4684 5692 1.779569 AGGTACGTGCACGAGAAAAG 58.220 50.000 42.94 15.09 43.02 2.27
4685 5693 3.247442 CATAGGTACGTGCACGAGAAAA 58.753 45.455 42.94 24.93 43.02 2.29
4688 5972 1.131693 CACATAGGTACGTGCACGAGA 59.868 52.381 42.94 27.48 43.02 4.04
4702 5986 1.654105 GCGGTCACGAGAAACACATAG 59.346 52.381 0.00 0.00 44.60 2.23
4715 6019 0.591659 GAAAAAGGTCAGGCGGTCAC 59.408 55.000 0.00 0.00 0.00 3.67
4734 6038 4.888239 AGAGATCAAATCCATGCAGAAAGG 59.112 41.667 0.00 0.00 0.00 3.11
4759 6067 0.738975 CGTGAGCGTCTTGGGAGATA 59.261 55.000 0.00 0.00 33.70 1.98
4771 6079 1.253800 CAGAAATCGTCATCGTGAGCG 59.746 52.381 0.00 0.00 38.33 5.03
4777 6085 2.854777 GTCCTCACAGAAATCGTCATCG 59.145 50.000 0.00 0.00 38.55 3.84
4789 6097 6.401474 CGTTAACATTCATCTTGTCCTCACAG 60.401 42.308 6.39 0.00 32.71 3.66
4819 6127 3.275143 TCAGTTCTCCTCAACGCAAAAA 58.725 40.909 0.00 0.00 0.00 1.94
4821 6129 2.613026 TCAGTTCTCCTCAACGCAAA 57.387 45.000 0.00 0.00 0.00 3.68
4823 6131 2.839486 AATCAGTTCTCCTCAACGCA 57.161 45.000 0.00 0.00 0.00 5.24
4824 6132 3.251004 ACAAAATCAGTTCTCCTCAACGC 59.749 43.478 0.00 0.00 0.00 4.84
4825 6133 4.511454 TCACAAAATCAGTTCTCCTCAACG 59.489 41.667 0.00 0.00 0.00 4.10
4826 6134 5.278022 GGTCACAAAATCAGTTCTCCTCAAC 60.278 44.000 0.00 0.00 0.00 3.18
4827 6135 4.821805 GGTCACAAAATCAGTTCTCCTCAA 59.178 41.667 0.00 0.00 0.00 3.02
4828 6136 4.389374 GGTCACAAAATCAGTTCTCCTCA 58.611 43.478 0.00 0.00 0.00 3.86
4829 6137 3.753797 GGGTCACAAAATCAGTTCTCCTC 59.246 47.826 0.00 0.00 0.00 3.71
4830 6138 3.138283 TGGGTCACAAAATCAGTTCTCCT 59.862 43.478 0.00 0.00 0.00 3.69
4845 6165 1.080434 GTGAGTCGCTCTGGGTCAC 60.080 63.158 8.07 0.00 0.00 3.67
4850 6170 0.247460 TGGAATGTGAGTCGCTCTGG 59.753 55.000 5.11 0.00 0.00 3.86
4867 6187 4.679373 AATACATACCTGAGAGCACTGG 57.321 45.455 0.00 0.00 35.48 4.00
4870 6190 5.184340 ACGTAATACATACCTGAGAGCAC 57.816 43.478 0.00 0.00 0.00 4.40
4871 6191 7.520451 AATACGTAATACATACCTGAGAGCA 57.480 36.000 0.00 0.00 0.00 4.26
4872 6192 7.866393 ACAAATACGTAATACATACCTGAGAGC 59.134 37.037 0.00 0.00 0.00 4.09
4873 6193 9.395707 GACAAATACGTAATACATACCTGAGAG 57.604 37.037 0.00 0.00 0.00 3.20
4898 6230 9.799106 AGAAAGAAAGATGGAAAACATAAGAGA 57.201 29.630 0.00 0.00 40.72 3.10
4901 6233 8.796475 TGGAGAAAGAAAGATGGAAAACATAAG 58.204 33.333 0.00 0.00 40.72 1.73
4937 6666 0.592637 CAATGGAACGACAAGCTGCA 59.407 50.000 1.02 0.00 0.00 4.41
4938 6667 0.874390 TCAATGGAACGACAAGCTGC 59.126 50.000 0.00 0.00 0.00 5.25
4959 6688 2.133281 TAGCCACCAGAGCGTAGTTA 57.867 50.000 0.00 0.00 34.64 2.24
4961 6690 1.486211 AATAGCCACCAGAGCGTAGT 58.514 50.000 0.00 0.00 34.64 2.73
4966 6695 2.128771 TTCCAAATAGCCACCAGAGC 57.871 50.000 0.00 0.00 0.00 4.09
4970 6699 7.509546 TGTTTTTATTTTCCAAATAGCCACCA 58.490 30.769 0.00 0.00 0.00 4.17
4972 6701 8.825667 TCTGTTTTTATTTTCCAAATAGCCAC 57.174 30.769 0.00 0.00 0.00 5.01
5125 6866 8.761689 ACCAATTATCCTTCTACAAAATTGCAT 58.238 29.630 0.00 0.00 34.52 3.96
5146 6887 3.778622 ACCTCTCTACCCACTACCAAT 57.221 47.619 0.00 0.00 0.00 3.16
5164 6905 9.342308 TGTCCATCAATATTCTCAAAATCTACC 57.658 33.333 0.00 0.00 0.00 3.18
5230 7004 9.517609 ACATAAAGAGATAAACTGTATGACGTC 57.482 33.333 9.11 9.11 37.61 4.34
5258 7034 9.703892 CACTCTAGCTACAAAGATATGCTTAAT 57.296 33.333 0.00 0.00 35.24 1.40
5326 7103 9.102757 CAGCTTAGCGGTTTCATCATATATAAT 57.897 33.333 0.00 0.00 0.00 1.28
5343 7120 2.744202 ACCTTCACAAATCAGCTTAGCG 59.256 45.455 0.00 0.00 0.00 4.26
5353 7130 6.418057 TGCCAGATTAAAACCTTCACAAAT 57.582 33.333 0.00 0.00 0.00 2.32
5354 7131 5.860941 TGCCAGATTAAAACCTTCACAAA 57.139 34.783 0.00 0.00 0.00 2.83
5369 7169 6.097839 ACATGAATCTTGCTTATTTGCCAGAT 59.902 34.615 0.00 0.00 44.10 2.90
5374 7174 6.694411 CACCTACATGAATCTTGCTTATTTGC 59.306 38.462 0.00 0.00 0.00 3.68
5375 7175 6.694411 GCACCTACATGAATCTTGCTTATTTG 59.306 38.462 0.00 0.00 0.00 2.32
5403 7204 5.721480 CCCAGAAAATACCTTTTTCCCTGAT 59.279 40.000 7.09 0.00 38.74 2.90
5405 7206 5.083821 TCCCAGAAAATACCTTTTTCCCTG 58.916 41.667 7.09 0.00 38.74 4.45
5408 7209 7.819415 CAGAATTCCCAGAAAATACCTTTTTCC 59.181 37.037 0.65 0.00 38.74 3.13
5455 7259 2.095718 GGCCGTTTCACTTGTTGAGATC 60.096 50.000 0.00 0.00 34.94 2.75
5620 7438 6.265196 TGCATAGTGTTCCACTGATTCTTTTT 59.735 34.615 7.13 0.00 45.01 1.94
5627 7445 3.988976 ACTGCATAGTGTTCCACTGAT 57.011 42.857 7.13 0.00 45.01 2.90
5649 7467 5.760253 AGGATGTATATCAAAACCAGAAGCG 59.240 40.000 1.63 0.00 34.90 4.68
5669 7487 5.669798 AAAACCCTCCATGCTAATAGGAT 57.330 39.130 0.00 0.00 0.00 3.24
5693 7513 5.129815 CCCCTGAAATTCATCACCAAATCAT 59.870 40.000 0.00 0.00 0.00 2.45
5757 7577 4.643334 TGAATGAAGCATCCAGAATTCCAG 59.357 41.667 0.65 0.00 0.00 3.86
5758 7578 4.602107 TGAATGAAGCATCCAGAATTCCA 58.398 39.130 0.65 0.00 0.00 3.53
5759 7579 5.786264 ATGAATGAAGCATCCAGAATTCC 57.214 39.130 0.65 0.00 0.00 3.01
5760 7580 5.983720 CCAATGAATGAAGCATCCAGAATTC 59.016 40.000 0.00 0.00 0.00 2.17
5761 7581 5.424252 ACCAATGAATGAAGCATCCAGAATT 59.576 36.000 0.00 0.00 0.00 2.17
5762 7582 4.960469 ACCAATGAATGAAGCATCCAGAAT 59.040 37.500 0.00 0.00 0.00 2.40
5763 7583 4.346730 ACCAATGAATGAAGCATCCAGAA 58.653 39.130 0.00 0.00 0.00 3.02
5764 7584 3.949754 GACCAATGAATGAAGCATCCAGA 59.050 43.478 0.00 0.00 0.00 3.86
5791 7611 3.935203 AGTCTTTGCATCATTCCGTGTAG 59.065 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.