Multiple sequence alignment - TraesCS1D01G028200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G028200 chr1D 100.000 5749 0 0 1 5749 11176050 11181798 0.000000e+00 10617.0
1 TraesCS1D01G028200 chr1D 89.029 2926 294 17 2329 5243 11319543 11322452 0.000000e+00 3600.0
2 TraesCS1D01G028200 chr1D 87.075 2940 296 53 2331 5243 11455550 11458432 0.000000e+00 3247.0
3 TraesCS1D01G028200 chr1D 88.772 2556 249 25 2429 4968 11495872 11498405 0.000000e+00 3096.0
4 TraesCS1D01G028200 chr1D 86.319 2646 301 37 2305 4918 11289601 11292217 0.000000e+00 2824.0
5 TraesCS1D01G028200 chr1D 92.292 960 62 2 904 1863 11494190 11495137 0.000000e+00 1352.0
6 TraesCS1D01G028200 chr1D 85.759 323 37 7 5299 5616 11322420 11322738 3.320000e-87 333.0
7 TraesCS1D01G028200 chr1D 92.000 125 7 1 435 559 11451993 11452114 7.660000e-39 172.0
8 TraesCS1D01G028200 chr1D 83.125 160 13 4 594 743 11452199 11452354 3.610000e-27 134.0
9 TraesCS1D01G028200 chr1D 92.500 80 6 0 5608 5687 11458611 11458690 1.310000e-21 115.0
10 TraesCS1D01G028200 chr1D 90.698 43 4 0 118 160 11451764 11451806 2.240000e-04 58.4
11 TraesCS1D01G028200 chr1A 90.119 4271 318 54 812 5062 13453095 13457281 0.000000e+00 5454.0
12 TraesCS1D01G028200 chr1A 88.679 2747 276 15 2155 4897 13665234 13667949 0.000000e+00 3317.0
13 TraesCS1D01G028200 chr1A 87.819 2742 280 38 2305 5023 13571106 13573816 0.000000e+00 3164.0
14 TraesCS1D01G028200 chr1A 88.367 2596 262 14 2305 4897 13415556 13418114 0.000000e+00 3085.0
15 TraesCS1D01G028200 chr1A 89.184 2450 252 10 2159 4602 12589371 12586929 0.000000e+00 3044.0
16 TraesCS1D01G028200 chr1A 85.593 2832 353 38 2154 4968 22614668 22611875 0.000000e+00 2918.0
17 TraesCS1D01G028200 chr1A 83.262 1876 198 53 181 2004 12591645 12589834 0.000000e+00 1618.0
18 TraesCS1D01G028200 chr1A 85.864 1337 148 23 838 2149 13313957 13315277 0.000000e+00 1384.0
19 TraesCS1D01G028200 chr1A 91.076 381 31 3 4637 5016 12586860 12586482 3.970000e-141 512.0
20 TraesCS1D01G028200 chr1A 83.978 543 47 18 234 766 13568421 13568933 8.660000e-133 484.0
21 TraesCS1D01G028200 chr1A 88.401 319 33 3 5299 5613 12586082 12585764 1.170000e-101 381.0
22 TraesCS1D01G028200 chr1A 85.319 361 47 5 233 589 13452535 13452893 9.100000e-98 368.0
23 TraesCS1D01G028200 chr1A 86.890 328 38 4 233 559 13662515 13662838 4.230000e-96 363.0
24 TraesCS1D01G028200 chr1A 90.141 142 14 0 5608 5749 12585824 12585683 9.840000e-43 185.0
25 TraesCS1D01G028200 chr1A 87.838 148 16 2 268 414 12591792 12591646 7.660000e-39 172.0
26 TraesCS1D01G028200 chr1A 83.537 164 8 4 594 747 13662945 13663099 1.000000e-27 135.0
27 TraesCS1D01G028200 chr1A 87.234 94 4 6 1 91 13568280 13568368 3.670000e-17 100.0
28 TraesCS1D01G028200 chr1A 82.474 97 12 1 609 705 13452883 13452974 4.780000e-11 80.5
29 TraesCS1D01G028200 chr1B 84.164 2930 375 45 2335 5223 17017316 17014435 0.000000e+00 2758.0
30 TraesCS1D01G028200 chr1B 86.872 2468 308 11 2143 4600 16857779 16860240 0.000000e+00 2748.0
31 TraesCS1D01G028200 chr1B 88.934 1238 108 13 931 2149 16529960 16531187 0.000000e+00 1500.0
32 TraesCS1D01G028200 chr1B 90.009 1131 92 10 958 2071 16839511 16840637 0.000000e+00 1443.0
33 TraesCS1D01G028200 chr1B 94.816 868 45 0 995 1862 17339057 17339924 0.000000e+00 1354.0
34 TraesCS1D01G028200 chr1B 87.276 1171 115 16 998 2149 16856397 16857552 0.000000e+00 1306.0
35 TraesCS1D01G028200 chr1B 92.442 913 69 0 931 1843 16518177 16519089 0.000000e+00 1304.0
36 TraesCS1D01G028200 chr1B 86.562 1146 112 15 1010 2142 16925821 16926937 0.000000e+00 1225.0
37 TraesCS1D01G028200 chr1B 91.648 443 25 6 1715 2149 16545670 16546108 2.290000e-168 603.0
38 TraesCS1D01G028200 chr1B 86.364 352 41 3 2163 2511 17340360 17340707 1.510000e-100 377.0
39 TraesCS1D01G028200 chr1B 93.145 248 8 5 1910 2149 16519086 16519332 7.090000e-94 355.0
40 TraesCS1D01G028200 chr1B 89.209 278 28 2 5337 5613 16861182 16861458 4.260000e-91 346.0
41 TraesCS1D01G028200 chr1B 78.296 493 59 30 233 705 16517616 16518080 2.040000e-69 274.0
42 TraesCS1D01G028200 chr1B 76.674 463 76 21 4740 5185 16860695 16861142 1.610000e-55 228.0
43 TraesCS1D01G028200 chr1B 89.051 137 15 0 5608 5744 16861398 16861534 2.750000e-38 171.0
44 TraesCS1D01G028200 chr1B 96.875 32 1 0 88 119 249672813 249672844 3.000000e-03 54.7
45 TraesCS1D01G028200 chrUn 94.816 868 45 0 995 1862 317005241 317004374 0.000000e+00 1354.0
46 TraesCS1D01G028200 chrUn 94.816 868 45 0 995 1862 317985041 317984174 0.000000e+00 1354.0
47 TraesCS1D01G028200 chrUn 94.816 868 45 0 995 1862 346217258 346218125 0.000000e+00 1354.0
48 TraesCS1D01G028200 chrUn 86.648 352 40 3 2163 2511 317983738 317983391 3.250000e-102 383.0
49 TraesCS1D01G028200 chrUn 83.108 148 21 3 2004 2149 317004373 317004228 1.300000e-26 132.0
50 TraesCS1D01G028200 chrUn 83.108 148 21 3 2004 2149 317984173 317984028 1.300000e-26 132.0
51 TraesCS1D01G028200 chr4D 100.000 30 0 0 88 117 39850115 39850144 8.050000e-04 56.5
52 TraesCS1D01G028200 chr2D 96.774 31 1 0 88 118 442158802 442158772 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G028200 chr1D 11176050 11181798 5748 False 10617.000000 10617 100.000000 1 5749 1 chr1D.!!$F1 5748
1 TraesCS1D01G028200 chr1D 11289601 11292217 2616 False 2824.000000 2824 86.319000 2305 4918 1 chr1D.!!$F2 2613
2 TraesCS1D01G028200 chr1D 11494190 11498405 4215 False 2224.000000 3096 90.532000 904 4968 2 chr1D.!!$F5 4064
3 TraesCS1D01G028200 chr1D 11319543 11322738 3195 False 1966.500000 3600 87.394000 2329 5616 2 chr1D.!!$F3 3287
4 TraesCS1D01G028200 chr1D 11451764 11458690 6926 False 745.280000 3247 89.079600 118 5687 5 chr1D.!!$F4 5569
5 TraesCS1D01G028200 chr1A 13415556 13418114 2558 False 3085.000000 3085 88.367000 2305 4897 1 chr1A.!!$F2 2592
6 TraesCS1D01G028200 chr1A 22611875 22614668 2793 True 2918.000000 2918 85.593000 2154 4968 1 chr1A.!!$R1 2814
7 TraesCS1D01G028200 chr1A 13452535 13457281 4746 False 1967.500000 5454 85.970667 233 5062 3 chr1A.!!$F3 4829
8 TraesCS1D01G028200 chr1A 13313957 13315277 1320 False 1384.000000 1384 85.864000 838 2149 1 chr1A.!!$F1 1311
9 TraesCS1D01G028200 chr1A 13662515 13667949 5434 False 1271.666667 3317 86.368667 233 4897 3 chr1A.!!$F5 4664
10 TraesCS1D01G028200 chr1A 13568280 13573816 5536 False 1249.333333 3164 86.343667 1 5023 3 chr1A.!!$F4 5022
11 TraesCS1D01G028200 chr1A 12585683 12591792 6109 True 985.333333 3044 88.317000 181 5749 6 chr1A.!!$R2 5568
12 TraesCS1D01G028200 chr1B 17014435 17017316 2881 True 2758.000000 2758 84.164000 2335 5223 1 chr1B.!!$R1 2888
13 TraesCS1D01G028200 chr1B 16529960 16531187 1227 False 1500.000000 1500 88.934000 931 2149 1 chr1B.!!$F1 1218
14 TraesCS1D01G028200 chr1B 16839511 16840637 1126 False 1443.000000 1443 90.009000 958 2071 1 chr1B.!!$F3 1113
15 TraesCS1D01G028200 chr1B 16925821 16926937 1116 False 1225.000000 1225 86.562000 1010 2142 1 chr1B.!!$F4 1132
16 TraesCS1D01G028200 chr1B 16856397 16861534 5137 False 959.800000 2748 85.816400 998 5744 5 chr1B.!!$F7 4746
17 TraesCS1D01G028200 chr1B 17339057 17340707 1650 False 865.500000 1354 90.590000 995 2511 2 chr1B.!!$F8 1516
18 TraesCS1D01G028200 chr1B 16517616 16519332 1716 False 644.333333 1304 87.961000 233 2149 3 chr1B.!!$F6 1916
19 TraesCS1D01G028200 chrUn 346217258 346218125 867 False 1354.000000 1354 94.816000 995 1862 1 chrUn.!!$F1 867
20 TraesCS1D01G028200 chrUn 317004228 317005241 1013 True 743.000000 1354 88.962000 995 2149 2 chrUn.!!$R1 1154
21 TraesCS1D01G028200 chrUn 317983391 317985041 1650 True 623.000000 1354 88.190667 995 2511 3 chrUn.!!$R2 1516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 481 0.036388 GCATCGAAGGAACTGACCCA 60.036 55.000 0.00 0.00 40.86 4.51 F
589 742 0.725686 CATTCTGTTCTGCTCTGCCG 59.274 55.000 0.00 0.00 0.00 5.69 F
776 1271 0.827507 TTTCAGAGCCTTTGGTGCCC 60.828 55.000 0.00 0.00 0.00 5.36 F
797 1440 1.153449 CCGTTGCTCCCGCTTCATA 60.153 57.895 0.00 0.00 36.97 2.15 F
918 2763 1.327303 TCGATTTGGCTTGGCAACTT 58.673 45.000 9.13 0.65 37.61 2.66 F
1101 2981 1.719246 CGCGTCAAGAAAGATGTCGAA 59.281 47.619 0.00 0.00 32.37 3.71 F
2974 6175 1.221021 CCTTGGCTCCGGAGTAACC 59.779 63.158 31.43 23.86 0.00 2.85 F
2976 6177 0.391263 CTTGGCTCCGGAGTAACCAC 60.391 60.000 31.43 14.20 38.90 4.16 F
4256 7472 0.898320 ACAACGGCTGCTAGTCATCT 59.102 50.000 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 3712 6.539173 TGCATACCTTTTGTTCTCTAGGAAA 58.461 36.000 0.00 0.0 35.51 3.13 R
2266 5277 6.552445 ATGCTCAGGTAGATATATTGGGAC 57.448 41.667 0.00 0.0 0.00 4.46 R
2658 5859 1.681793 TGATTAGCCGACTGCCTAGAC 59.318 52.381 0.00 0.0 42.71 2.59 R
2845 6046 6.764308 ACTCCACCACATTTCTTCAATATG 57.236 37.500 0.00 0.0 0.00 1.78 R
2910 6111 1.136891 GCTTTGGTTTCACTTGCTGGT 59.863 47.619 0.00 0.0 0.00 4.00 R
2976 6177 5.634896 GCATCTCAACCAAACTGTTATCTG 58.365 41.667 0.00 0.0 0.00 2.90 R
4100 7316 0.467290 AGATGCGAGGGGTCTCTCTC 60.467 60.000 0.00 0.0 37.86 3.20 R
4404 7620 0.962356 CTGCAGGCCCAAGTCGAAAT 60.962 55.000 5.57 0.0 0.00 2.17 R
5323 9190 3.773119 ACAATCGATGTAACAGTACCCCT 59.227 43.478 0.00 0.0 41.63 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 46 7.651027 AAAGTAGCAATGCTTGGATCTAAAT 57.349 32.000 14.85 0.00 40.44 1.40
47 51 6.799512 AGCAATGCTTGGATCTAAATGTTAC 58.200 36.000 0.00 0.00 33.89 2.50
49 53 6.694411 GCAATGCTTGGATCTAAATGTTACAG 59.306 38.462 0.00 0.00 0.00 2.74
50 54 7.629222 GCAATGCTTGGATCTAAATGTTACAGT 60.629 37.037 0.00 0.00 0.00 3.55
53 57 9.632638 ATGCTTGGATCTAAATGTTACAGTATT 57.367 29.630 0.00 0.00 0.00 1.89
92 96 6.401394 AGATTCTGATCGATTTGTGTTGAGA 58.599 36.000 0.00 0.00 37.37 3.27
93 97 7.046652 AGATTCTGATCGATTTGTGTTGAGAT 58.953 34.615 0.00 0.00 37.37 2.75
94 98 6.653273 TTCTGATCGATTTGTGTTGAGATC 57.347 37.500 0.00 0.00 36.12 2.75
95 99 5.723295 TCTGATCGATTTGTGTTGAGATCA 58.277 37.500 0.00 5.92 41.16 2.92
96 100 6.343703 TCTGATCGATTTGTGTTGAGATCAT 58.656 36.000 0.00 0.00 42.08 2.45
98 102 4.604843 TCGATTTGTGTTGAGATCATGC 57.395 40.909 0.00 0.00 0.00 4.06
99 103 3.374988 TCGATTTGTGTTGAGATCATGCC 59.625 43.478 0.00 0.00 0.00 4.40
100 104 3.127376 CGATTTGTGTTGAGATCATGCCA 59.873 43.478 0.00 0.00 0.00 4.92
101 105 4.201980 CGATTTGTGTTGAGATCATGCCAT 60.202 41.667 0.00 0.00 0.00 4.40
102 106 5.657474 GATTTGTGTTGAGATCATGCCATT 58.343 37.500 0.00 0.00 0.00 3.16
104 108 5.471556 TTGTGTTGAGATCATGCCATTTT 57.528 34.783 0.00 0.00 0.00 1.82
106 110 4.100529 GTGTTGAGATCATGCCATTTTCG 58.899 43.478 0.00 0.00 0.00 3.46
107 111 4.009002 TGTTGAGATCATGCCATTTTCGA 58.991 39.130 0.00 0.00 0.00 3.71
109 113 2.615447 TGAGATCATGCCATTTTCGAGC 59.385 45.455 0.00 0.00 0.00 5.03
110 114 1.600957 AGATCATGCCATTTTCGAGCG 59.399 47.619 0.00 0.00 0.00 5.03
111 115 1.331756 GATCATGCCATTTTCGAGCGT 59.668 47.619 0.00 0.00 0.00 5.07
113 117 0.447406 CATGCCATTTTCGAGCGTCA 59.553 50.000 0.00 0.00 0.00 4.35
115 119 0.237235 TGCCATTTTCGAGCGTCAAC 59.763 50.000 0.00 0.00 0.00 3.18
116 120 0.237235 GCCATTTTCGAGCGTCAACA 59.763 50.000 0.00 0.00 0.00 3.33
117 121 1.725931 GCCATTTTCGAGCGTCAACAG 60.726 52.381 0.00 0.00 0.00 3.16
118 122 1.798223 CCATTTTCGAGCGTCAACAGA 59.202 47.619 0.00 0.00 0.00 3.41
245 293 1.714414 GCTGCTGTTGCTGATCTCG 59.286 57.895 0.00 0.00 40.01 4.04
292 341 6.921307 GGGTATGTTTCTTGTCGATTTGTTTT 59.079 34.615 0.00 0.00 0.00 2.43
323 373 4.702131 AGTAGCAATGCTTGGGTCTAAAAG 59.298 41.667 14.85 0.00 40.44 2.27
343 393 3.615155 AGGTTATTGCTTCTCCTGCTTC 58.385 45.455 0.00 0.00 0.00 3.86
357 407 0.171231 TGCTTCACGAGTCTCATCGG 59.829 55.000 0.00 0.00 46.91 4.18
363 413 0.317160 ACGAGTCTCATCGGTTTGCA 59.683 50.000 0.00 0.00 46.91 4.08
369 419 0.523968 CTCATCGGTTTGCATTGGCG 60.524 55.000 0.00 0.00 45.35 5.69
391 441 3.966543 CCAGGGTGGCGGTTTCCT 61.967 66.667 0.00 0.00 0.00 3.36
400 450 2.354821 GTGGCGGTTTCCTGTCATTATC 59.645 50.000 0.00 0.00 0.00 1.75
408 458 4.412796 TTCCTGTCATTATCCAGAGCAG 57.587 45.455 0.00 0.00 0.00 4.24
431 481 0.036388 GCATCGAAGGAACTGACCCA 60.036 55.000 0.00 0.00 40.86 4.51
433 483 1.550524 CATCGAAGGAACTGACCCAGA 59.449 52.381 0.45 0.00 40.86 3.86
478 528 5.444176 CCTCCCATCTTTCTTGCTATTCTT 58.556 41.667 0.00 0.00 0.00 2.52
516 573 7.334090 TGCTGATTTGCTAGATCTTAAGTTCT 58.666 34.615 17.87 17.87 0.00 3.01
517 574 7.493971 TGCTGATTTGCTAGATCTTAAGTTCTC 59.506 37.037 17.41 7.17 0.00 2.87
518 575 7.493971 GCTGATTTGCTAGATCTTAAGTTCTCA 59.506 37.037 17.41 9.35 0.00 3.27
542 599 8.353684 TCATTACTTATTCTTCCAGATCGAGTC 58.646 37.037 0.00 0.00 0.00 3.36
589 742 0.725686 CATTCTGTTCTGCTCTGCCG 59.274 55.000 0.00 0.00 0.00 5.69
592 745 1.474330 TCTGTTCTGCTCTGCCGATA 58.526 50.000 0.00 0.00 0.00 2.92
606 767 3.627218 GATAACGCCGCCGCTGTC 61.627 66.667 0.00 0.00 38.22 3.51
659 823 2.890808 TGGTATGGATCTCGCAGTTC 57.109 50.000 0.00 0.00 0.00 3.01
660 824 2.388735 TGGTATGGATCTCGCAGTTCT 58.611 47.619 0.00 0.00 0.00 3.01
667 831 2.208431 GATCTCGCAGTTCTGATTGGG 58.792 52.381 3.84 1.83 0.00 4.12
698 862 4.748892 TCTAGAGGAGCTCGTTGAAATTG 58.251 43.478 10.79 0.00 35.36 2.32
702 877 2.485814 AGGAGCTCGTTGAAATTGAAGC 59.514 45.455 7.83 0.00 0.00 3.86
757 1252 4.674281 TTTTGCAGGTTTCCGGTTATTT 57.326 36.364 0.00 0.00 0.00 1.40
766 1261 4.482386 GTTTCCGGTTATTTTTCAGAGCC 58.518 43.478 0.00 0.00 0.00 4.70
767 1262 3.713826 TCCGGTTATTTTTCAGAGCCT 57.286 42.857 0.00 0.00 0.00 4.58
768 1263 4.028993 TCCGGTTATTTTTCAGAGCCTT 57.971 40.909 0.00 0.00 0.00 4.35
769 1264 4.403734 TCCGGTTATTTTTCAGAGCCTTT 58.596 39.130 0.00 0.00 0.00 3.11
770 1265 4.217550 TCCGGTTATTTTTCAGAGCCTTTG 59.782 41.667 0.00 0.00 0.00 2.77
772 1267 4.022329 CGGTTATTTTTCAGAGCCTTTGGT 60.022 41.667 0.00 0.00 0.00 3.67
773 1268 5.230182 GGTTATTTTTCAGAGCCTTTGGTG 58.770 41.667 0.00 0.00 0.00 4.17
774 1269 2.888834 TTTTTCAGAGCCTTTGGTGC 57.111 45.000 0.00 0.00 0.00 5.01
776 1271 0.827507 TTTCAGAGCCTTTGGTGCCC 60.828 55.000 0.00 0.00 0.00 5.36
782 1425 4.974721 CCTTTGGTGCCCAGCCGT 62.975 66.667 0.00 0.00 33.81 5.68
783 1426 2.912025 CTTTGGTGCCCAGCCGTT 60.912 61.111 0.00 0.00 33.81 4.44
797 1440 1.153449 CCGTTGCTCCCGCTTCATA 60.153 57.895 0.00 0.00 36.97 2.15
800 1443 1.739067 GTTGCTCCCGCTTCATAGTT 58.261 50.000 0.00 0.00 36.97 2.24
801 1444 2.737359 CGTTGCTCCCGCTTCATAGTTA 60.737 50.000 0.00 0.00 36.97 2.24
802 1445 3.467803 GTTGCTCCCGCTTCATAGTTAT 58.532 45.455 0.00 0.00 36.97 1.89
803 1446 3.838244 TGCTCCCGCTTCATAGTTATT 57.162 42.857 0.00 0.00 36.97 1.40
804 1447 4.948341 TGCTCCCGCTTCATAGTTATTA 57.052 40.909 0.00 0.00 36.97 0.98
805 1448 5.483685 TGCTCCCGCTTCATAGTTATTAT 57.516 39.130 0.00 0.00 36.97 1.28
808 2331 6.166982 GCTCCCGCTTCATAGTTATTATTCT 58.833 40.000 0.00 0.00 0.00 2.40
810 2333 7.297936 TCCCGCTTCATAGTTATTATTCTGA 57.702 36.000 0.00 0.00 0.00 3.27
852 2381 2.099431 CGCTGTCTTCTGCTCTGCC 61.099 63.158 0.00 0.00 36.58 4.85
854 2383 2.047844 TGTCTTCTGCTCTGCCGC 60.048 61.111 0.00 0.00 0.00 6.53
918 2763 1.327303 TCGATTTGGCTTGGCAACTT 58.673 45.000 9.13 0.65 37.61 2.66
944 2820 4.744570 TCTAGAGCTTGGATTGTGTTACG 58.255 43.478 0.00 0.00 0.00 3.18
964 2840 3.193691 ACGGATCCCTACATTCATCGATC 59.806 47.826 6.06 0.00 0.00 3.69
1101 2981 1.719246 CGCGTCAAGAAAGATGTCGAA 59.281 47.619 0.00 0.00 32.37 3.71
1644 3536 2.230660 GGCAAAACCACTCTTGCTAGT 58.769 47.619 6.73 0.00 45.79 2.57
1791 3691 3.277715 TGCGATACTGGATGCAAATCAA 58.722 40.909 0.00 0.00 33.80 2.57
1938 3867 7.436080 AGTGTGTAAATATATTGTACGAACGGG 59.564 37.037 0.00 0.00 0.00 5.28
2266 5277 2.557490 GGGCTAATCTGTACTAGGGTCG 59.443 54.545 0.00 0.00 0.00 4.79
2286 5297 5.125739 GGTCGTCCCAATATATCTACCTGAG 59.874 48.000 0.00 0.00 0.00 3.35
2410 5564 7.854557 TTTGTTCATCATCTGATTGTAGGAG 57.145 36.000 0.00 0.00 32.72 3.69
2658 5859 6.974965 ACTTTGCTTTCTCCAACAAGAATAG 58.025 36.000 0.00 0.00 35.30 1.73
2845 6046 6.688813 GTGAATTTCAACAAGTGTCTGAAGAC 59.311 38.462 0.00 3.41 44.97 3.01
2893 6094 3.884693 CACTGGCCATCATTACTATTGCA 59.115 43.478 5.51 0.00 0.00 4.08
2910 6111 1.238439 GCAAGTGCTTTGGCTAGTGA 58.762 50.000 0.00 0.00 37.26 3.41
2974 6175 1.221021 CCTTGGCTCCGGAGTAACC 59.779 63.158 31.43 23.86 0.00 2.85
2976 6177 0.391263 CTTGGCTCCGGAGTAACCAC 60.391 60.000 31.43 14.20 38.90 4.16
3016 6217 5.009110 TGAGATGCGGAGAGTACTATCTTTG 59.991 44.000 16.64 8.61 0.00 2.77
3096 6297 6.499106 TCCAGAAGATAGCACCATTGATAA 57.501 37.500 0.00 0.00 0.00 1.75
3162 6363 1.274703 GGAGATCAAGGGACCAGCCA 61.275 60.000 0.00 0.00 38.95 4.75
3229 6430 7.984050 AGAAGTATGATCCAGCCAATATATTCG 59.016 37.037 0.00 0.00 0.00 3.34
3235 6436 7.219322 TGATCCAGCCAATATATTCGGATATG 58.781 38.462 6.46 10.25 32.01 1.78
3241 6442 6.377327 CCAATATATTCGGATATGGGCAAC 57.623 41.667 6.46 0.00 28.12 4.17
3327 6528 7.331687 AGCAAAGTTTGTTAATGTATTGGATGC 59.668 33.333 16.70 0.00 0.00 3.91
3346 6556 1.972872 CCACTGGGAATAGCATGTCC 58.027 55.000 0.00 0.00 35.59 4.02
3529 6742 5.107837 GCGTGTACTTGATATGTCATACTGC 60.108 44.000 0.00 0.31 33.56 4.40
3608 6821 5.014534 TCACCTAAGGTACCTTGGTCTAA 57.985 43.478 33.19 20.88 36.25 2.10
3609 6822 5.405279 TCACCTAAGGTACCTTGGTCTAAA 58.595 41.667 33.19 19.01 36.25 1.85
3611 6824 6.329723 TCACCTAAGGTACCTTGGTCTAAAAA 59.670 38.462 33.19 11.99 36.25 1.94
3957 7173 3.727726 TGTGCAACCTACATCATATCGG 58.272 45.455 0.00 0.00 34.36 4.18
4001 7217 7.116805 GCAATTCCGAAGAAACATCTTTTGAAT 59.883 33.333 9.09 9.09 35.09 2.57
4100 7316 1.227380 GCACTGCGAGGGTGGATAG 60.227 63.158 0.00 0.00 35.47 2.08
4225 7441 1.003759 CGACGTCTCTGGATAACGAGG 60.004 57.143 14.70 0.00 39.59 4.63
4256 7472 0.898320 ACAACGGCTGCTAGTCATCT 59.102 50.000 0.00 0.00 0.00 2.90
4321 7537 1.303309 GGTCAGCAGCGCAGATAATT 58.697 50.000 11.47 0.00 0.00 1.40
4367 7583 2.810852 GCAGAAGCAGTTTACTTCAGCT 59.189 45.455 12.01 0.00 46.89 4.24
4404 7620 3.616560 GCGAAAGAGGATGGTAACTGTGA 60.617 47.826 0.00 0.00 37.61 3.58
4507 7723 2.351276 GAGGCCAAGGAAGCGGAA 59.649 61.111 5.01 0.00 0.00 4.30
4605 7821 1.448540 GTACTCATGCTGCACGCCT 60.449 57.895 3.57 0.00 38.05 5.52
4606 7822 1.448365 TACTCATGCTGCACGCCTG 60.448 57.895 3.57 0.00 38.05 4.85
4607 7823 4.175489 CTCATGCTGCACGCCTGC 62.175 66.667 3.57 0.19 44.52 4.85
4630 8111 4.754618 CACCTAACTAATCACTTGTGCACA 59.245 41.667 17.42 17.42 0.00 4.57
4672 8206 8.246430 TCTAAATGACGGACTGACCTTATTAT 57.754 34.615 0.00 0.00 36.31 1.28
4695 8232 7.751047 ATTTTCTGCATTGATTTTGATCTCG 57.249 32.000 0.00 0.00 0.00 4.04
4866 8482 5.406649 AGAACTCATCTTGTCGTCTCATTC 58.593 41.667 0.00 0.00 33.39 2.67
4963 8590 9.645059 CAAGTATCTGATCAGAAAAGTGAACTA 57.355 33.333 28.40 10.71 41.36 2.24
4997 8629 2.155279 GAAACCTGCCCAGTCTCTTTC 58.845 52.381 0.00 0.00 0.00 2.62
5048 8681 8.611654 AATTATTTTCTGCAAATTTGTCTGCT 57.388 26.923 19.03 2.39 39.38 4.24
5052 8685 4.164822 TCTGCAAATTTGTCTGCTAAGC 57.835 40.909 19.03 2.48 39.38 3.09
5068 8701 8.794553 GTCTGCTAAGCATAGTTAGTAATAGGA 58.205 37.037 0.00 0.00 38.13 2.94
5113 8746 2.514160 GGGAAGATTTATGGACAGGGGT 59.486 50.000 0.00 0.00 0.00 4.95
5114 8747 3.720002 GGGAAGATTTATGGACAGGGGTA 59.280 47.826 0.00 0.00 0.00 3.69
5145 9011 4.844655 AGGTGACAAGTACTCCAGGTTATT 59.155 41.667 0.00 0.00 0.00 1.40
5243 9110 4.141711 GGGATCTGTATGGTGAAACTGCTA 60.142 45.833 0.00 0.00 36.74 3.49
5244 9111 4.811557 GGATCTGTATGGTGAAACTGCTAC 59.188 45.833 0.00 0.00 36.74 3.58
5245 9112 4.882842 TCTGTATGGTGAAACTGCTACA 57.117 40.909 0.00 0.00 36.74 2.74
5246 9113 5.420725 TCTGTATGGTGAAACTGCTACAT 57.579 39.130 0.00 0.00 36.74 2.29
5247 9114 5.419542 TCTGTATGGTGAAACTGCTACATC 58.580 41.667 0.00 0.00 36.74 3.06
5248 9115 4.180817 TGTATGGTGAAACTGCTACATCG 58.819 43.478 0.00 0.00 36.74 3.84
5249 9116 3.610040 ATGGTGAAACTGCTACATCGA 57.390 42.857 0.00 0.00 36.74 3.59
5250 9117 3.610040 TGGTGAAACTGCTACATCGAT 57.390 42.857 0.00 0.00 36.74 3.59
5251 9118 3.937814 TGGTGAAACTGCTACATCGATT 58.062 40.909 0.00 0.00 36.74 3.34
5252 9119 3.684305 TGGTGAAACTGCTACATCGATTG 59.316 43.478 0.00 0.00 36.74 2.67
5253 9120 3.684788 GGTGAAACTGCTACATCGATTGT 59.315 43.478 0.00 0.13 38.70 2.71
5254 9121 4.154195 GGTGAAACTGCTACATCGATTGTT 59.846 41.667 0.00 0.00 37.02 2.83
5255 9122 5.334879 GGTGAAACTGCTACATCGATTGTTT 60.335 40.000 0.00 1.06 37.02 2.83
5256 9123 6.128391 GGTGAAACTGCTACATCGATTGTTTA 60.128 38.462 0.00 0.00 37.02 2.01
5257 9124 6.955963 GTGAAACTGCTACATCGATTGTTTAG 59.044 38.462 0.00 0.00 39.87 1.85
5258 9125 6.871492 TGAAACTGCTACATCGATTGTTTAGA 59.129 34.615 0.00 0.00 39.87 2.10
5259 9126 6.893958 AACTGCTACATCGATTGTTTAGAG 57.106 37.500 0.00 0.00 39.87 2.43
5260 9127 5.352284 ACTGCTACATCGATTGTTTAGAGG 58.648 41.667 0.00 0.00 39.87 3.69
5261 9128 5.105310 ACTGCTACATCGATTGTTTAGAGGT 60.105 40.000 0.00 0.00 39.87 3.85
5262 9129 6.096423 ACTGCTACATCGATTGTTTAGAGGTA 59.904 38.462 0.00 0.00 39.87 3.08
5263 9130 6.270815 TGCTACATCGATTGTTTAGAGGTAC 58.729 40.000 0.00 0.00 39.87 3.34
5264 9131 6.096423 TGCTACATCGATTGTTTAGAGGTACT 59.904 38.462 0.00 0.00 40.32 2.73
5265 9132 6.418226 GCTACATCGATTGTTTAGAGGTACTG 59.582 42.308 0.00 0.00 38.33 2.74
5266 9133 6.282199 ACATCGATTGTTTAGAGGTACTGT 57.718 37.500 0.00 0.00 33.89 3.55
5267 9134 6.698380 ACATCGATTGTTTAGAGGTACTGTT 58.302 36.000 0.00 0.00 33.89 3.16
5268 9135 7.833786 ACATCGATTGTTTAGAGGTACTGTTA 58.166 34.615 0.00 0.00 33.89 2.41
5269 9136 7.758528 ACATCGATTGTTTAGAGGTACTGTTAC 59.241 37.037 0.00 0.00 33.89 2.50
5270 9137 7.218228 TCGATTGTTTAGAGGTACTGTTACA 57.782 36.000 0.00 0.00 41.55 2.41
5271 9138 7.833786 TCGATTGTTTAGAGGTACTGTTACAT 58.166 34.615 0.00 0.00 41.55 2.29
5272 9139 7.972277 TCGATTGTTTAGAGGTACTGTTACATC 59.028 37.037 0.00 0.00 41.55 3.06
5273 9140 7.044249 CGATTGTTTAGAGGTACTGTTACATCG 60.044 40.741 0.00 0.00 42.66 3.84
5274 9141 6.822667 TGTTTAGAGGTACTGTTACATCGA 57.177 37.500 0.00 0.00 42.66 3.59
5275 9142 7.400599 TGTTTAGAGGTACTGTTACATCGAT 57.599 36.000 0.00 0.00 42.66 3.59
5276 9143 7.833786 TGTTTAGAGGTACTGTTACATCGATT 58.166 34.615 0.00 0.00 42.66 3.34
5277 9144 7.972277 TGTTTAGAGGTACTGTTACATCGATTC 59.028 37.037 0.00 0.00 42.66 2.52
5278 9145 7.876936 TTAGAGGTACTGTTACATCGATTCT 57.123 36.000 0.00 0.00 42.66 2.40
5279 9146 6.777213 AGAGGTACTGTTACATCGATTCTT 57.223 37.500 0.00 0.00 42.66 2.52
5280 9147 7.171630 AGAGGTACTGTTACATCGATTCTTT 57.828 36.000 0.00 0.00 42.66 2.52
5281 9148 8.289939 AGAGGTACTGTTACATCGATTCTTTA 57.710 34.615 0.00 0.00 42.66 1.85
5282 9149 8.407064 AGAGGTACTGTTACATCGATTCTTTAG 58.593 37.037 0.00 0.00 42.66 1.85
5283 9150 8.289939 AGGTACTGTTACATCGATTCTTTAGA 57.710 34.615 0.00 0.00 37.18 2.10
5284 9151 8.407064 AGGTACTGTTACATCGATTCTTTAGAG 58.593 37.037 0.00 0.00 37.18 2.43
5285 9152 7.648510 GGTACTGTTACATCGATTCTTTAGAGG 59.351 40.741 0.00 0.00 0.00 3.69
5286 9153 7.171630 ACTGTTACATCGATTCTTTAGAGGT 57.828 36.000 0.00 0.00 33.37 3.85
5287 9154 8.289939 ACTGTTACATCGATTCTTTAGAGGTA 57.710 34.615 0.00 0.00 31.21 3.08
5288 9155 8.189460 ACTGTTACATCGATTCTTTAGAGGTAC 58.811 37.037 0.00 0.00 32.07 3.34
5290 9157 8.188799 TGTTACATCGATTCTTTAGAGGTACTG 58.811 37.037 0.00 0.00 41.55 2.74
5291 9158 6.777213 ACATCGATTCTTTAGAGGTACTGT 57.223 37.500 0.00 0.00 41.55 3.55
5292 9159 7.876936 ACATCGATTCTTTAGAGGTACTGTA 57.123 36.000 0.00 0.00 41.55 2.74
5293 9160 8.466617 ACATCGATTCTTTAGAGGTACTGTAT 57.533 34.615 0.00 0.00 41.55 2.29
5294 9161 8.353684 ACATCGATTCTTTAGAGGTACTGTATG 58.646 37.037 0.00 0.00 41.55 2.39
5295 9162 7.273320 TCGATTCTTTAGAGGTACTGTATGG 57.727 40.000 0.00 0.00 41.55 2.74
5296 9163 6.832384 TCGATTCTTTAGAGGTACTGTATGGT 59.168 38.462 0.00 0.00 41.55 3.55
5297 9164 6.918569 CGATTCTTTAGAGGTACTGTATGGTG 59.081 42.308 0.00 0.00 41.55 4.17
5298 9165 7.201794 CGATTCTTTAGAGGTACTGTATGGTGA 60.202 40.741 0.00 0.00 41.55 4.02
5299 9166 7.786046 TTCTTTAGAGGTACTGTATGGTGAA 57.214 36.000 0.00 0.00 41.55 3.18
5300 9167 7.786046 TCTTTAGAGGTACTGTATGGTGAAA 57.214 36.000 0.00 0.00 41.55 2.69
5301 9168 8.375493 TCTTTAGAGGTACTGTATGGTGAAAT 57.625 34.615 0.00 0.00 41.55 2.17
5302 9169 8.822805 TCTTTAGAGGTACTGTATGGTGAAATT 58.177 33.333 0.00 0.00 41.55 1.82
5303 9170 9.449719 CTTTAGAGGTACTGTATGGTGAAATTT 57.550 33.333 0.00 0.00 41.55 1.82
5306 9173 8.375493 AGAGGTACTGTATGGTGAAATTTAGA 57.625 34.615 0.00 0.00 41.55 2.10
5307 9174 8.478877 AGAGGTACTGTATGGTGAAATTTAGAG 58.521 37.037 0.00 0.00 41.55 2.43
5308 9175 7.565680 AGGTACTGTATGGTGAAATTTAGAGG 58.434 38.462 0.00 0.00 37.18 3.69
5309 9176 6.766467 GGTACTGTATGGTGAAATTTAGAGGG 59.234 42.308 0.00 0.00 0.00 4.30
5310 9177 5.755849 ACTGTATGGTGAAATTTAGAGGGG 58.244 41.667 0.00 0.00 0.00 4.79
5311 9178 5.491078 ACTGTATGGTGAAATTTAGAGGGGA 59.509 40.000 0.00 0.00 0.00 4.81
5312 9179 6.160459 ACTGTATGGTGAAATTTAGAGGGGAT 59.840 38.462 0.00 0.00 0.00 3.85
5313 9180 6.601332 TGTATGGTGAAATTTAGAGGGGATC 58.399 40.000 0.00 0.00 0.00 3.36
5314 9181 6.389869 TGTATGGTGAAATTTAGAGGGGATCT 59.610 38.462 0.00 0.00 42.47 2.75
5315 9182 5.116084 TGGTGAAATTTAGAGGGGATCTG 57.884 43.478 0.00 0.00 39.20 2.90
5316 9183 4.540099 TGGTGAAATTTAGAGGGGATCTGT 59.460 41.667 0.00 0.00 39.20 3.41
5317 9184 5.729229 TGGTGAAATTTAGAGGGGATCTGTA 59.271 40.000 0.00 0.00 39.20 2.74
5318 9185 6.389869 TGGTGAAATTTAGAGGGGATCTGTAT 59.610 38.462 0.00 0.00 39.20 2.29
5319 9186 6.712547 GGTGAAATTTAGAGGGGATCTGTATG 59.287 42.308 0.00 0.00 39.20 2.39
5320 9187 6.712547 GTGAAATTTAGAGGGGATCTGTATGG 59.287 42.308 0.00 0.00 39.20 2.74
5321 9188 6.619437 TGAAATTTAGAGGGGATCTGTATGGA 59.381 38.462 0.00 0.00 39.20 3.41
5322 9189 6.441088 AATTTAGAGGGGATCTGTATGGAC 57.559 41.667 0.00 0.00 39.20 4.02
5323 9190 4.552883 TTAGAGGGGATCTGTATGGACA 57.447 45.455 0.00 0.00 39.20 4.02
5345 9212 3.773119 AGGGGTACTGTTACATCGATTGT 59.227 43.478 0.00 0.13 42.62 2.71
5357 9224 4.180817 ACATCGATTGTTTGCTGATCGTA 58.819 39.130 0.00 0.00 42.29 3.43
5362 9229 3.552604 TTGTTTGCTGATCGTAAAGGC 57.447 42.857 2.26 0.00 0.00 4.35
5382 9249 4.534103 AGGCTTTAGTCTTGAGGAATGAGT 59.466 41.667 0.00 0.00 0.00 3.41
5405 9272 4.970860 AGATTCATGTAGATGACCCCAG 57.029 45.455 1.27 0.00 38.38 4.45
5445 9313 7.453393 TGTAATGGCTATTAGAGAAGAATGGG 58.547 38.462 2.28 0.00 29.71 4.00
5496 9364 4.562789 GCTTTGAAAGGTCAACAAGTGAAC 59.437 41.667 7.09 0.00 43.52 3.18
5511 9379 7.823745 ACAAGTGAACTGACCATAAAGAAAT 57.176 32.000 0.00 0.00 0.00 2.17
5532 9400 7.507616 AGAAATTTTTGGTATGTACAAGGTCCA 59.492 33.333 0.00 3.68 0.00 4.02
5573 9441 9.643693 ATTTTTGTGGTTAGCATTCAGAAATAG 57.356 29.630 3.11 0.00 0.00 1.73
5574 9442 7.759489 TTTGTGGTTAGCATTCAGAAATAGT 57.241 32.000 0.00 0.00 0.00 2.12
5575 9443 8.856153 TTTGTGGTTAGCATTCAGAAATAGTA 57.144 30.769 0.00 0.00 0.00 1.82
5576 9444 9.461312 TTTGTGGTTAGCATTCAGAAATAGTAT 57.539 29.630 0.00 0.00 0.00 2.12
5577 9445 9.461312 TTGTGGTTAGCATTCAGAAATAGTATT 57.539 29.630 0.00 0.00 0.00 1.89
5580 9448 9.273016 TGGTTAGCATTCAGAAATAGTATTAGC 57.727 33.333 0.00 0.00 0.00 3.09
5581 9449 9.273016 GGTTAGCATTCAGAAATAGTATTAGCA 57.727 33.333 0.00 0.00 0.00 3.49
5584 9452 8.830201 AGCATTCAGAAATAGTATTAGCAGAG 57.170 34.615 0.00 0.00 0.00 3.35
5585 9453 8.646004 AGCATTCAGAAATAGTATTAGCAGAGA 58.354 33.333 0.00 0.00 0.00 3.10
5586 9454 9.434420 GCATTCAGAAATAGTATTAGCAGAGAT 57.566 33.333 0.00 0.00 0.00 2.75
5613 9481 9.911788 AATCTGAATCAAAGATATAGTGTGGTT 57.088 29.630 0.00 0.00 33.17 3.67
5616 9484 8.662781 TGAATCAAAGATATAGTGTGGTTAGC 57.337 34.615 0.00 0.00 0.00 3.09
5617 9485 8.264347 TGAATCAAAGATATAGTGTGGTTAGCA 58.736 33.333 0.00 0.00 0.00 3.49
5618 9486 9.277783 GAATCAAAGATATAGTGTGGTTAGCAT 57.722 33.333 0.00 0.00 0.00 3.79
5619 9487 9.632638 AATCAAAGATATAGTGTGGTTAGCATT 57.367 29.630 0.00 0.00 0.00 3.56
5620 9488 8.662781 TCAAAGATATAGTGTGGTTAGCATTC 57.337 34.615 0.00 0.00 0.00 2.67
5621 9489 8.264347 TCAAAGATATAGTGTGGTTAGCATTCA 58.736 33.333 0.00 0.00 0.00 2.57
5622 9490 8.554528 CAAAGATATAGTGTGGTTAGCATTCAG 58.445 37.037 0.00 0.00 0.00 3.02
5623 9491 7.603180 AGATATAGTGTGGTTAGCATTCAGA 57.397 36.000 0.00 0.00 0.00 3.27
5624 9492 8.023021 AGATATAGTGTGGTTAGCATTCAGAA 57.977 34.615 0.00 0.00 0.00 3.02
5625 9493 8.486210 AGATATAGTGTGGTTAGCATTCAGAAA 58.514 33.333 0.00 0.00 0.00 2.52
5626 9494 9.277783 GATATAGTGTGGTTAGCATTCAGAAAT 57.722 33.333 0.00 0.00 0.00 2.17
5710 9578 4.688021 CTGTAGAAAGTAGCCAGTGGATC 58.312 47.826 15.20 0.57 0.00 3.36
5719 9587 4.530161 AGTAGCCAGTGGATCATATCTTCC 59.470 45.833 15.20 0.00 0.00 3.46
5720 9588 3.596101 AGCCAGTGGATCATATCTTCCT 58.404 45.455 15.20 0.00 32.95 3.36
5745 9613 9.341899 CTTAAGTGTTTGGTTGCTTGTTATATC 57.658 33.333 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 46 6.852420 AGCAGGAGAACTAATACTGTAACA 57.148 37.500 0.00 0.00 0.00 2.41
47 51 6.214191 TCTCAAGCAGGAGAACTAATACTG 57.786 41.667 5.01 0.00 40.81 2.74
49 53 7.437862 CAGAATCTCAAGCAGGAGAACTAATAC 59.562 40.741 10.82 0.59 46.28 1.89
50 54 7.343057 TCAGAATCTCAAGCAGGAGAACTAATA 59.657 37.037 10.82 2.65 46.28 0.98
53 57 5.019470 TCAGAATCTCAAGCAGGAGAACTA 58.981 41.667 10.82 2.84 46.28 2.24
54 58 3.837146 TCAGAATCTCAAGCAGGAGAACT 59.163 43.478 10.82 10.27 46.28 3.01
92 96 1.331756 GACGCTCGAAAATGGCATGAT 59.668 47.619 0.00 0.00 0.00 2.45
93 97 0.726827 GACGCTCGAAAATGGCATGA 59.273 50.000 0.00 0.00 0.00 3.07
94 98 0.447406 TGACGCTCGAAAATGGCATG 59.553 50.000 0.00 0.00 0.00 4.06
95 99 1.135689 GTTGACGCTCGAAAATGGCAT 60.136 47.619 0.00 0.00 0.00 4.40
96 100 0.237235 GTTGACGCTCGAAAATGGCA 59.763 50.000 0.00 0.00 0.00 4.92
98 102 1.798223 TCTGTTGACGCTCGAAAATGG 59.202 47.619 0.00 0.00 0.00 3.16
99 103 2.827555 GTCTGTTGACGCTCGAAAATG 58.172 47.619 0.00 0.00 33.15 2.32
110 114 3.409026 ACCTGGATTCAGTCTGTTGAC 57.591 47.619 0.00 0.00 43.22 3.18
111 115 3.496692 CCAACCTGGATTCAGTCTGTTGA 60.497 47.826 18.22 0.00 40.96 3.18
113 117 2.224867 CCCAACCTGGATTCAGTCTGTT 60.225 50.000 0.00 0.00 40.96 3.16
115 119 1.630369 TCCCAACCTGGATTCAGTCTG 59.370 52.381 0.00 0.00 40.96 3.51
116 120 2.044793 TCCCAACCTGGATTCAGTCT 57.955 50.000 0.00 0.00 40.96 3.24
117 121 2.743183 CGATCCCAACCTGGATTCAGTC 60.743 54.545 0.00 0.00 45.25 3.51
118 122 1.210478 CGATCCCAACCTGGATTCAGT 59.790 52.381 0.00 0.00 45.25 3.41
167 173 6.660800 AGCACAGGAATACAGTAGTACTCTA 58.339 40.000 0.00 0.00 31.96 2.43
169 175 5.221087 GGAGCACAGGAATACAGTAGTACTC 60.221 48.000 0.00 0.00 31.96 2.59
170 176 4.645588 GGAGCACAGGAATACAGTAGTACT 59.354 45.833 0.00 0.00 31.96 2.73
171 177 4.645588 AGGAGCACAGGAATACAGTAGTAC 59.354 45.833 0.00 0.00 31.96 2.73
172 178 4.868268 AGGAGCACAGGAATACAGTAGTA 58.132 43.478 0.00 0.00 34.10 1.82
174 180 3.243234 CGAGGAGCACAGGAATACAGTAG 60.243 52.174 0.00 0.00 0.00 2.57
175 181 2.688446 CGAGGAGCACAGGAATACAGTA 59.312 50.000 0.00 0.00 0.00 2.74
177 183 1.478510 ACGAGGAGCACAGGAATACAG 59.521 52.381 0.00 0.00 0.00 2.74
179 185 1.751924 AGACGAGGAGCACAGGAATAC 59.248 52.381 0.00 0.00 0.00 1.89
182 188 1.251527 GGAGACGAGGAGCACAGGAA 61.252 60.000 0.00 0.00 0.00 3.36
323 373 3.127721 GTGAAGCAGGAGAAGCAATAACC 59.872 47.826 0.00 0.00 0.00 2.85
343 393 0.716108 GCAAACCGATGAGACTCGTG 59.284 55.000 0.75 0.00 36.93 4.35
357 407 0.246086 TGGATTCCGCCAATGCAAAC 59.754 50.000 0.00 0.00 39.70 2.93
363 413 1.076777 CACCCTGGATTCCGCCAAT 60.077 57.895 0.00 0.00 37.52 3.16
369 419 2.781431 AAACCGCCACCCTGGATTCC 62.781 60.000 0.00 0.00 40.96 3.01
384 434 3.879892 GCTCTGGATAATGACAGGAAACC 59.120 47.826 0.00 0.00 35.47 3.27
391 441 3.473625 CATGCTGCTCTGGATAATGACA 58.526 45.455 0.00 0.00 0.00 3.58
400 450 1.093496 TTCGATGCATGCTGCTCTGG 61.093 55.000 20.33 1.41 45.31 3.86
408 458 1.063174 GTCAGTTCCTTCGATGCATGC 59.937 52.381 11.82 11.82 0.00 4.06
422 472 1.522569 GCCGCTATCTGGGTCAGTT 59.477 57.895 0.00 0.00 32.61 3.16
431 481 3.577805 ATTTTTACCAGGCCGCTATCT 57.422 42.857 0.00 0.00 0.00 1.98
433 483 3.383505 GGAAATTTTTACCAGGCCGCTAT 59.616 43.478 0.00 0.00 0.00 2.97
564 652 0.392193 AGCAGAACAGAATGGCTCGG 60.392 55.000 0.00 0.00 43.62 4.63
566 654 2.008329 CAGAGCAGAACAGAATGGCTC 58.992 52.381 0.00 0.00 43.88 4.70
567 655 1.949547 GCAGAGCAGAACAGAATGGCT 60.950 52.381 0.00 0.00 43.62 4.75
568 656 0.450983 GCAGAGCAGAACAGAATGGC 59.549 55.000 0.00 0.00 43.62 4.40
571 659 0.610174 TCGGCAGAGCAGAACAGAAT 59.390 50.000 0.00 0.00 28.67 2.40
589 742 3.627218 GACAGCGGCGGCGTTATC 61.627 66.667 32.35 22.39 46.35 1.75
606 767 2.430546 ACTTCACGACAGAGCAGAAG 57.569 50.000 0.00 0.00 41.00 2.85
659 823 5.395103 CCTCTAGAACTGAGTTCCCAATCAG 60.395 48.000 20.81 8.95 46.76 2.90
660 824 4.467795 CCTCTAGAACTGAGTTCCCAATCA 59.532 45.833 20.81 0.11 42.85 2.57
667 831 3.064820 CGAGCTCCTCTAGAACTGAGTTC 59.935 52.174 17.22 17.22 42.25 3.01
698 862 3.950395 AGCTGTAATCCAATCCAAGCTTC 59.050 43.478 0.00 0.00 0.00 3.86
702 877 3.217626 GGGAGCTGTAATCCAATCCAAG 58.782 50.000 0.00 0.00 38.70 3.61
757 1252 2.732289 GGCACCAAAGGCTCTGAAA 58.268 52.632 0.00 0.00 0.00 2.69
787 1430 6.089551 CGTCAGAATAATAACTATGAAGCGGG 59.910 42.308 0.00 0.00 0.00 6.13
797 1440 5.301045 TCGGATGGTCGTCAGAATAATAACT 59.699 40.000 0.00 0.00 0.00 2.24
800 1443 4.319984 CGTCGGATGGTCGTCAGAATAATA 60.320 45.833 0.00 0.00 0.00 0.98
801 1444 3.550233 CGTCGGATGGTCGTCAGAATAAT 60.550 47.826 0.00 0.00 0.00 1.28
802 1445 2.223409 CGTCGGATGGTCGTCAGAATAA 60.223 50.000 0.00 0.00 0.00 1.40
803 1446 1.332686 CGTCGGATGGTCGTCAGAATA 59.667 52.381 0.00 0.00 0.00 1.75
804 1447 0.100682 CGTCGGATGGTCGTCAGAAT 59.899 55.000 0.00 0.00 0.00 2.40
805 1448 0.956902 TCGTCGGATGGTCGTCAGAA 60.957 55.000 0.00 0.00 0.00 3.02
808 2331 2.404186 CCTCGTCGGATGGTCGTCA 61.404 63.158 0.00 0.00 33.16 4.35
810 2333 2.045634 TCCTCGTCGGATGGTCGT 60.046 61.111 0.00 0.00 36.69 4.34
840 2369 2.433145 TTCGCGGCAGAGCAGAAG 60.433 61.111 6.13 0.00 36.85 2.85
918 2763 6.360370 AACACAATCCAAGCTCTAGAACTA 57.640 37.500 0.00 0.00 0.00 2.24
944 2820 4.753233 CAGATCGATGAATGTAGGGATCC 58.247 47.826 0.54 1.92 32.69 3.36
1108 2988 4.952704 GCTCTCAAGCTCCTTCCC 57.047 61.111 0.00 0.00 45.55 3.97
1167 3047 2.358003 ACTTGCCTGTCGAGCTGC 60.358 61.111 0.00 0.00 0.00 5.25
1644 3536 8.704668 TCACCTTTAATCTTCTCATATACTGCA 58.295 33.333 0.00 0.00 0.00 4.41
1812 3712 6.539173 TGCATACCTTTTGTTCTCTAGGAAA 58.461 36.000 0.00 0.00 35.51 3.13
1938 3867 7.454260 AGGTGACCTTGAAAATTATTCTGAC 57.546 36.000 0.00 0.00 0.00 3.51
2266 5277 6.552445 ATGCTCAGGTAGATATATTGGGAC 57.448 41.667 0.00 0.00 0.00 4.46
2658 5859 1.681793 TGATTAGCCGACTGCCTAGAC 59.318 52.381 0.00 0.00 42.71 2.59
2845 6046 6.764308 ACTCCACCACATTTCTTCAATATG 57.236 37.500 0.00 0.00 0.00 1.78
2893 6094 1.142870 TGGTCACTAGCCAAAGCACTT 59.857 47.619 0.00 0.00 43.56 3.16
2910 6111 1.136891 GCTTTGGTTTCACTTGCTGGT 59.863 47.619 0.00 0.00 0.00 4.00
2974 6175 6.605849 CATCTCAACCAAACTGTTATCTGTG 58.394 40.000 0.00 0.00 0.00 3.66
2976 6177 5.634896 GCATCTCAACCAAACTGTTATCTG 58.365 41.667 0.00 0.00 0.00 2.90
3016 6217 9.116067 AGATGAGACGGTAGATTATAATAGCTC 57.884 37.037 0.00 0.00 0.00 4.09
3096 6297 6.042552 CACCCACTTCCATATCAGTCTATCTT 59.957 42.308 0.00 0.00 0.00 2.40
3162 6363 7.499895 TGAAGTAGTTTAATCCGACCAAAAACT 59.500 33.333 0.00 0.00 41.74 2.66
3227 6428 3.677700 GCATATACGTTGCCCATATCCGA 60.678 47.826 0.00 0.00 33.95 4.55
3228 6429 2.607635 GCATATACGTTGCCCATATCCG 59.392 50.000 0.00 0.00 33.95 4.18
3229 6430 3.873910 AGCATATACGTTGCCCATATCC 58.126 45.455 7.08 0.00 41.06 2.59
3235 6436 3.845625 GCAAGCATATACGTTGCCC 57.154 52.632 7.08 0.00 40.61 5.36
3239 6440 2.018542 ACACGGCAAGCATATACGTT 57.981 45.000 0.00 0.00 35.36 3.99
3241 6442 2.217847 GTGTACACGGCAAGCATATACG 59.782 50.000 10.84 0.00 0.00 3.06
3327 6528 1.492176 AGGACATGCTATTCCCAGTGG 59.508 52.381 0.63 0.63 31.51 4.00
3346 6556 3.314553 ACGACGGACATTACTTTGTGAG 58.685 45.455 0.00 0.00 0.00 3.51
3529 6742 3.119352 GGCTGCTACTTTTTCCCAGATTG 60.119 47.826 0.00 0.00 0.00 2.67
3583 6796 4.470304 AGACCAAGGTACCTTAGGTGAATC 59.530 45.833 34.52 25.17 37.47 2.52
3957 7173 7.418408 GGAATTGCAACTAATACTTAGGCTTC 58.582 38.462 0.00 0.00 37.57 3.86
4100 7316 0.467290 AGATGCGAGGGGTCTCTCTC 60.467 60.000 0.00 0.00 37.86 3.20
4225 7441 1.731093 CCGTTGTGTTTGGTGGGTC 59.269 57.895 0.00 0.00 0.00 4.46
4321 7537 1.272212 GGCAAAGCTCCCGATTCAAAA 59.728 47.619 0.00 0.00 0.00 2.44
4404 7620 0.962356 CTGCAGGCCCAAGTCGAAAT 60.962 55.000 5.57 0.00 0.00 2.17
4605 7821 3.751175 GCACAAGTGATTAGTTAGGTGCA 59.249 43.478 12.77 0.00 34.66 4.57
4606 7822 3.751175 TGCACAAGTGATTAGTTAGGTGC 59.249 43.478 11.43 11.43 35.04 5.01
4607 7823 4.754618 TGTGCACAAGTGATTAGTTAGGTG 59.245 41.667 19.28 0.00 0.00 4.00
4608 7824 4.968259 TGTGCACAAGTGATTAGTTAGGT 58.032 39.130 19.28 0.00 0.00 3.08
4609 7825 6.237835 CGTATGTGCACAAGTGATTAGTTAGG 60.238 42.308 25.72 9.13 0.00 2.69
4610 7826 6.310467 ACGTATGTGCACAAGTGATTAGTTAG 59.690 38.462 25.72 4.16 0.00 2.34
4611 7827 6.160684 ACGTATGTGCACAAGTGATTAGTTA 58.839 36.000 25.72 4.39 0.00 2.24
4672 8206 6.072008 TCCGAGATCAAAATCAATGCAGAAAA 60.072 34.615 0.00 0.00 34.07 2.29
4695 8232 4.965814 TCATGAGCATCTTGGTAGATTCC 58.034 43.478 0.00 0.00 39.11 3.01
4866 8482 2.477825 AGCACTATAGCGCAGTTGATG 58.522 47.619 14.86 1.24 40.15 3.07
4930 8556 9.645059 CTTTTCTGATCAGATACTTGTGTCTAA 57.355 33.333 25.64 9.77 37.29 2.10
4997 8629 1.114722 TTTCACCAGCCCTTGCCAAG 61.115 55.000 0.00 0.00 38.69 3.61
5068 8701 9.868160 CCCAAAATCTAGTTCTATCCCTAATTT 57.132 33.333 0.00 0.00 0.00 1.82
5113 8746 6.324512 TGGAGTACTTGTCACCTAAAACAGTA 59.675 38.462 0.00 0.00 0.00 2.74
5114 8747 5.129815 TGGAGTACTTGTCACCTAAAACAGT 59.870 40.000 0.00 0.00 0.00 3.55
5174 9040 9.733219 GAAATTAACGTGTAGAACTCTAGCTAT 57.267 33.333 0.00 0.00 0.00 2.97
5185 9051 8.766000 TTAGAGCATTGAAATTAACGTGTAGA 57.234 30.769 0.00 0.00 0.00 2.59
5243 9110 6.282199 ACAGTACCTCTAAACAATCGATGT 57.718 37.500 0.00 0.00 46.82 3.06
5244 9111 7.758076 TGTAACAGTACCTCTAAACAATCGATG 59.242 37.037 0.00 0.00 0.00 3.84
5245 9112 7.833786 TGTAACAGTACCTCTAAACAATCGAT 58.166 34.615 0.00 0.00 0.00 3.59
5246 9113 7.218228 TGTAACAGTACCTCTAAACAATCGA 57.782 36.000 0.00 0.00 0.00 3.59
5247 9114 7.044249 CGATGTAACAGTACCTCTAAACAATCG 60.044 40.741 0.00 0.00 0.00 3.34
5248 9115 7.972277 TCGATGTAACAGTACCTCTAAACAATC 59.028 37.037 0.00 0.00 0.00 2.67
5249 9116 7.833786 TCGATGTAACAGTACCTCTAAACAAT 58.166 34.615 0.00 0.00 0.00 2.71
5250 9117 7.218228 TCGATGTAACAGTACCTCTAAACAA 57.782 36.000 0.00 0.00 0.00 2.83
5251 9118 6.822667 TCGATGTAACAGTACCTCTAAACA 57.177 37.500 0.00 0.00 0.00 2.83
5252 9119 8.189460 AGAATCGATGTAACAGTACCTCTAAAC 58.811 37.037 0.00 0.00 0.00 2.01
5253 9120 8.289939 AGAATCGATGTAACAGTACCTCTAAA 57.710 34.615 0.00 0.00 0.00 1.85
5254 9121 7.876936 AGAATCGATGTAACAGTACCTCTAA 57.123 36.000 0.00 0.00 0.00 2.10
5255 9122 7.876936 AAGAATCGATGTAACAGTACCTCTA 57.123 36.000 0.00 0.00 0.00 2.43
5256 9123 6.777213 AAGAATCGATGTAACAGTACCTCT 57.223 37.500 0.00 0.00 0.00 3.69
5257 9124 8.404000 TCTAAAGAATCGATGTAACAGTACCTC 58.596 37.037 0.00 0.00 0.00 3.85
5258 9125 8.289939 TCTAAAGAATCGATGTAACAGTACCT 57.710 34.615 0.00 0.00 0.00 3.08
5259 9126 7.648510 CCTCTAAAGAATCGATGTAACAGTACC 59.351 40.741 0.00 0.00 0.00 3.34
5260 9127 8.189460 ACCTCTAAAGAATCGATGTAACAGTAC 58.811 37.037 0.00 0.00 0.00 2.73
5261 9128 8.289939 ACCTCTAAAGAATCGATGTAACAGTA 57.710 34.615 0.00 0.00 0.00 2.74
5262 9129 7.171630 ACCTCTAAAGAATCGATGTAACAGT 57.828 36.000 0.00 0.00 0.00 3.55
5263 9130 8.407064 AGTACCTCTAAAGAATCGATGTAACAG 58.593 37.037 0.00 0.00 0.00 3.16
5264 9131 8.188799 CAGTACCTCTAAAGAATCGATGTAACA 58.811 37.037 0.00 0.00 0.00 2.41
5265 9132 8.189460 ACAGTACCTCTAAAGAATCGATGTAAC 58.811 37.037 0.00 0.00 0.00 2.50
5266 9133 8.289939 ACAGTACCTCTAAAGAATCGATGTAA 57.710 34.615 0.00 0.00 0.00 2.41
5267 9134 7.876936 ACAGTACCTCTAAAGAATCGATGTA 57.123 36.000 0.00 0.00 0.00 2.29
5268 9135 6.777213 ACAGTACCTCTAAAGAATCGATGT 57.223 37.500 0.00 0.00 0.00 3.06
5269 9136 7.810282 CCATACAGTACCTCTAAAGAATCGATG 59.190 40.741 0.00 0.00 0.00 3.84
5270 9137 7.506261 ACCATACAGTACCTCTAAAGAATCGAT 59.494 37.037 0.00 0.00 0.00 3.59
5271 9138 6.832384 ACCATACAGTACCTCTAAAGAATCGA 59.168 38.462 0.00 0.00 0.00 3.59
5272 9139 6.918569 CACCATACAGTACCTCTAAAGAATCG 59.081 42.308 0.00 0.00 0.00 3.34
5273 9140 8.008513 TCACCATACAGTACCTCTAAAGAATC 57.991 38.462 0.00 0.00 0.00 2.52
5274 9141 7.973048 TCACCATACAGTACCTCTAAAGAAT 57.027 36.000 0.00 0.00 0.00 2.40
5275 9142 7.786046 TTCACCATACAGTACCTCTAAAGAA 57.214 36.000 0.00 0.00 0.00 2.52
5276 9143 7.786046 TTTCACCATACAGTACCTCTAAAGA 57.214 36.000 0.00 0.00 0.00 2.52
5277 9144 9.449719 AAATTTCACCATACAGTACCTCTAAAG 57.550 33.333 0.00 0.00 0.00 1.85
5280 9147 9.483489 TCTAAATTTCACCATACAGTACCTCTA 57.517 33.333 0.00 0.00 0.00 2.43
5281 9148 8.375493 TCTAAATTTCACCATACAGTACCTCT 57.625 34.615 0.00 0.00 0.00 3.69
5282 9149 7.711339 CCTCTAAATTTCACCATACAGTACCTC 59.289 40.741 0.00 0.00 0.00 3.85
5283 9150 7.365652 CCCTCTAAATTTCACCATACAGTACCT 60.366 40.741 0.00 0.00 0.00 3.08
5284 9151 6.766467 CCCTCTAAATTTCACCATACAGTACC 59.234 42.308 0.00 0.00 0.00 3.34
5285 9152 6.766467 CCCCTCTAAATTTCACCATACAGTAC 59.234 42.308 0.00 0.00 0.00 2.73
5286 9153 6.674861 TCCCCTCTAAATTTCACCATACAGTA 59.325 38.462 0.00 0.00 0.00 2.74
5287 9154 5.491078 TCCCCTCTAAATTTCACCATACAGT 59.509 40.000 0.00 0.00 0.00 3.55
5288 9155 6.001449 TCCCCTCTAAATTTCACCATACAG 57.999 41.667 0.00 0.00 0.00 2.74
5289 9156 6.389869 AGATCCCCTCTAAATTTCACCATACA 59.610 38.462 0.00 0.00 30.26 2.29
5290 9157 6.712547 CAGATCCCCTCTAAATTTCACCATAC 59.287 42.308 0.00 0.00 31.13 2.39
5291 9158 6.389869 ACAGATCCCCTCTAAATTTCACCATA 59.610 38.462 0.00 0.00 31.13 2.74
5292 9159 5.194537 ACAGATCCCCTCTAAATTTCACCAT 59.805 40.000 0.00 0.00 31.13 3.55
5293 9160 4.540099 ACAGATCCCCTCTAAATTTCACCA 59.460 41.667 0.00 0.00 31.13 4.17
5294 9161 5.117406 ACAGATCCCCTCTAAATTTCACC 57.883 43.478 0.00 0.00 31.13 4.02
5295 9162 6.712547 CCATACAGATCCCCTCTAAATTTCAC 59.287 42.308 0.00 0.00 31.13 3.18
5296 9163 6.619437 TCCATACAGATCCCCTCTAAATTTCA 59.381 38.462 0.00 0.00 31.13 2.69
5297 9164 6.937465 GTCCATACAGATCCCCTCTAAATTTC 59.063 42.308 0.00 0.00 31.13 2.17
5298 9165 6.389869 TGTCCATACAGATCCCCTCTAAATTT 59.610 38.462 0.00 0.00 31.13 1.82
5299 9166 5.911178 TGTCCATACAGATCCCCTCTAAATT 59.089 40.000 0.00 0.00 31.13 1.82
5300 9167 5.476983 TGTCCATACAGATCCCCTCTAAAT 58.523 41.667 0.00 0.00 31.13 1.40
5301 9168 4.890988 TGTCCATACAGATCCCCTCTAAA 58.109 43.478 0.00 0.00 31.13 1.85
5302 9169 4.552883 TGTCCATACAGATCCCCTCTAA 57.447 45.455 0.00 0.00 31.13 2.10
5320 9187 8.516694 ACAATCGATGTAACAGTACCCCTGTC 62.517 46.154 0.00 0.00 45.76 3.51
5321 9188 6.800041 ACAATCGATGTAACAGTACCCCTGT 61.800 44.000 0.00 0.00 45.38 4.00
5322 9189 4.382685 ACAATCGATGTAACAGTACCCCTG 60.383 45.833 0.00 0.00 43.34 4.45
5323 9190 3.773119 ACAATCGATGTAACAGTACCCCT 59.227 43.478 0.00 0.00 41.63 4.79
5324 9191 4.133013 ACAATCGATGTAACAGTACCCC 57.867 45.455 0.00 0.00 41.63 4.95
5325 9192 5.672819 GCAAACAATCGATGTAACAGTACCC 60.673 44.000 0.00 0.00 42.99 3.69
5326 9193 5.121768 AGCAAACAATCGATGTAACAGTACC 59.878 40.000 0.00 0.00 42.99 3.34
5327 9194 6.015504 CAGCAAACAATCGATGTAACAGTAC 58.984 40.000 0.00 0.00 42.99 2.73
5328 9195 5.929415 TCAGCAAACAATCGATGTAACAGTA 59.071 36.000 0.00 0.00 42.99 2.74
5329 9196 4.754618 TCAGCAAACAATCGATGTAACAGT 59.245 37.500 0.00 0.00 42.99 3.55
5330 9197 5.281693 TCAGCAAACAATCGATGTAACAG 57.718 39.130 0.00 0.00 42.99 3.16
5331 9198 5.445806 CGATCAGCAAACAATCGATGTAACA 60.446 40.000 0.00 0.00 42.99 2.41
5332 9199 4.957967 CGATCAGCAAACAATCGATGTAAC 59.042 41.667 0.00 0.00 42.99 2.50
5333 9200 4.629634 ACGATCAGCAAACAATCGATGTAA 59.370 37.500 10.57 0.00 42.99 2.41
5334 9201 4.180817 ACGATCAGCAAACAATCGATGTA 58.819 39.130 10.57 0.00 42.99 2.29
5345 9212 5.001232 ACTAAAGCCTTTACGATCAGCAAA 58.999 37.500 0.00 0.00 0.00 3.68
5357 9224 5.880901 TCATTCCTCAAGACTAAAGCCTTT 58.119 37.500 0.00 0.00 0.00 3.11
5362 9229 9.883142 AATCTTACTCATTCCTCAAGACTAAAG 57.117 33.333 0.00 0.00 0.00 1.85
5382 9249 6.143206 TCTGGGGTCATCTACATGAATCTTA 58.857 40.000 0.00 0.00 40.90 2.10
5430 9298 8.560903 ACAGAAAATACCCCATTCTTCTCTAAT 58.439 33.333 0.00 0.00 31.26 1.73
5483 9351 6.260050 TCTTTATGGTCAGTTCACTTGTTGAC 59.740 38.462 0.00 0.00 39.29 3.18
5496 9364 9.927668 ACATACCAAAAATTTCTTTATGGTCAG 57.072 29.630 12.80 10.36 41.22 3.51
5511 9379 5.697067 AGTGGACCTTGTACATACCAAAAA 58.303 37.500 0.00 0.00 0.00 1.94
5524 9392 9.838339 AAATACTATGATCTTAAGTGGACCTTG 57.162 33.333 1.63 0.00 34.46 3.61
5587 9455 9.911788 AACCACACTATATCTTTGATTCAGATT 57.088 29.630 0.00 0.00 32.94 2.40
5590 9458 8.768955 GCTAACCACACTATATCTTTGATTCAG 58.231 37.037 0.00 0.00 0.00 3.02
5591 9459 8.264347 TGCTAACCACACTATATCTTTGATTCA 58.736 33.333 0.00 0.00 0.00 2.57
5592 9460 8.662781 TGCTAACCACACTATATCTTTGATTC 57.337 34.615 0.00 0.00 0.00 2.52
5593 9461 9.632638 AATGCTAACCACACTATATCTTTGATT 57.367 29.630 0.00 0.00 0.00 2.57
5594 9462 9.277783 GAATGCTAACCACACTATATCTTTGAT 57.722 33.333 0.00 0.00 0.00 2.57
5595 9463 8.264347 TGAATGCTAACCACACTATATCTTTGA 58.736 33.333 0.00 0.00 0.00 2.69
5596 9464 8.437360 TGAATGCTAACCACACTATATCTTTG 57.563 34.615 0.00 0.00 0.00 2.77
5597 9465 8.486210 TCTGAATGCTAACCACACTATATCTTT 58.514 33.333 0.00 0.00 0.00 2.52
5598 9466 8.023021 TCTGAATGCTAACCACACTATATCTT 57.977 34.615 0.00 0.00 0.00 2.40
5599 9467 7.603180 TCTGAATGCTAACCACACTATATCT 57.397 36.000 0.00 0.00 0.00 1.98
5600 9468 8.662781 TTTCTGAATGCTAACCACACTATATC 57.337 34.615 0.00 0.00 0.00 1.63
5602 9470 9.764363 CTATTTCTGAATGCTAACCACACTATA 57.236 33.333 0.00 0.00 0.00 1.31
5603 9471 8.267894 ACTATTTCTGAATGCTAACCACACTAT 58.732 33.333 0.00 0.00 0.00 2.12
5604 9472 7.620880 ACTATTTCTGAATGCTAACCACACTA 58.379 34.615 0.00 0.00 0.00 2.74
5605 9473 6.476378 ACTATTTCTGAATGCTAACCACACT 58.524 36.000 0.00 0.00 0.00 3.55
5606 9474 6.743575 ACTATTTCTGAATGCTAACCACAC 57.256 37.500 0.00 0.00 0.00 3.82
5607 9475 8.264347 TGATACTATTTCTGAATGCTAACCACA 58.736 33.333 0.00 0.00 0.00 4.17
5608 9476 8.662781 TGATACTATTTCTGAATGCTAACCAC 57.337 34.615 0.00 0.00 0.00 4.16
5609 9477 7.442364 GCTGATACTATTTCTGAATGCTAACCA 59.558 37.037 0.00 0.00 0.00 3.67
5610 9478 7.442364 TGCTGATACTATTTCTGAATGCTAACC 59.558 37.037 0.00 0.00 0.00 2.85
5611 9479 8.370493 TGCTGATACTATTTCTGAATGCTAAC 57.630 34.615 0.00 0.00 0.00 2.34
5612 9480 8.424133 TCTGCTGATACTATTTCTGAATGCTAA 58.576 33.333 0.00 0.00 0.00 3.09
5613 9481 7.955918 TCTGCTGATACTATTTCTGAATGCTA 58.044 34.615 0.00 0.00 0.00 3.49
5614 9482 6.824553 TCTGCTGATACTATTTCTGAATGCT 58.175 36.000 0.00 0.00 0.00 3.79
5615 9483 6.927936 TCTCTGCTGATACTATTTCTGAATGC 59.072 38.462 0.00 0.00 0.00 3.56
5654 9522 4.961099 ACTTTCCTATACCACACTACCTCC 59.039 45.833 0.00 0.00 0.00 4.30
5689 9557 4.093743 TGATCCACTGGCTACTTTCTACA 58.906 43.478 0.00 0.00 0.00 2.74
5697 9565 4.530161 AGGAAGATATGATCCACTGGCTAC 59.470 45.833 6.24 0.00 0.00 3.58
5698 9566 4.756564 AGGAAGATATGATCCACTGGCTA 58.243 43.478 6.24 0.00 0.00 3.93
5701 9569 6.933521 CACTTAAGGAAGATATGATCCACTGG 59.066 42.308 7.53 0.00 36.45 4.00
5710 9578 7.029563 GCAACCAAACACTTAAGGAAGATATG 58.970 38.462 7.53 0.00 36.45 1.78
5719 9587 9.341899 GATATAACAAGCAACCAAACACTTAAG 57.658 33.333 0.00 0.00 0.00 1.85
5720 9588 9.073475 AGATATAACAAGCAACCAAACACTTAA 57.927 29.630 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.